Increased reactive nitrogen (N<sub>r</sub>, NO<sub>3</sub><sup>−</sup> + NH<sub>4</sub><sup>++</sup> + dissolved organic nitrogen) emission from the Asian continent poses profound threats to ecosystem safety from terrestrial throughout the ocean proper. To quantify atmospheric N<sub>r</sub> input, diagnose its sources, and evaluate influence on marine nitrogen cycle of the South China Sea (SCS), an oligotrophic marginal sea adjacent to the emission hot spot China, we conducted measurements of concentrations of nitrate and ammonium as well as other major ions and dual isotopes of nitrate (δ<sup>15</sup>N<sub>NO<sub>3</sub></sub> and δ<sup>18</sup>O<sub>NO<sub>3</sub></sub>) in atmospheric deposition collected from Dongsha Island off southern China. The δ<sup>15</sup>N<sub>NO<sub>3</sub></sub> and δ<sup>18</sup>O<sub>NO<sub>3</sub></sub> for dry deposition averaged at −2.8‰ and +58.8‰, ranging from −7.5 to +3.7‰ and from ∼ +17 to +88‰, respectively. Wet deposition, although with limited samples, showed a similar flux-weighted mean in δ<sup>15</sup>N<sub>NO<sub>3</sub></sub> (−2.6‰) yet a significantly higher mean in δ<sup>18</sup>O<sub>NO<sub>3</sub></sub> (+78.8‰). The dual isotope ratios showed an anti-correlation and an inverse seasonality; the δ<sup>15</sup>N<sub>NO<sub>3</sub></sub> values were higher in summer compared to those in winter, while the δ<sup>18</sup>O<sub>NO<sub>3</sub></sub> values were higher in winter than those in summer. In winter, not only dual isotopic compositions of nitrate but also the ammonium and nitrate dry deposition fluxes were relatively uniform, demonstrating a persistent influence of fossil fuel combustion sourced from Asian continental outflows via the northeasterly monsoon winds. More variable isotopic values in summer likely suggest varying sources and dynamical formation processes of dry deposition nitrate. Biomass burning and lightning are suggested to be responsible for the observed higher δ<sup>15</sup>N<sub>NO<sub>3</sub></sub> values in summer. Atmospheric nitrate and ammonium deposition together was estimated to be ∼50 mmol N m<sup>−2</sup> year<sup>−1</sup>, with the dominance of nitrate in dry deposition but ammonium slightly higher in wet deposition. If not including this additional fertilization of atmospheric inorganic nitrogen deposition to enhance the carbon sequestration, CO<sub>2</sub> release out of the SCS would be double than that of the present amount, 460 ± 430 mmol C m<sup>−2</sup> year<sup>−1</sup>. Our study demonstrates that atmospheric deposition may serve as an important external N<sub>r</sub> supplier to the SCS; however it is difficult to separate the isotopic signal from N<sub>2</sub> fixation (−2–0‰) due to their similarity in δ<sup>15</sup>N<sub>NO<sub>3</sub></sub>. More studies related to isotopic composition of nitrogen speciation in atmospheric N<sub>r</sub> deposition, their relative contributions and source identification, and the role of typhoons in the SCS are required.