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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-2179-2016</article-id><title-group><article-title>Effects of in situ CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> enrichment on structural characteristics,
photosynthesis, and growth of the Mediterranean<?xmltex \hack{\newpage}?> seagrass <italic>Posidonia oceanica</italic></article-title>
      </title-group><?xmltex \runningtitle{In situ ocean acidification effects on \textit{P. oceanica}}?><?xmltex \runningauthor{T.~E.~Cox et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Cox</surname><given-names>T. Erin</given-names></name>
          <email>erincox@hawaii.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Gazeau</surname><given-names>Frédéric</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8807-4597</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Alliouane</surname><given-names>Samir</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Hendriks</surname><given-names>Iris E.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Mahacek</surname><given-names>Paul</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Le Fur</surname><given-names>Arnaud</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Gattuso</surname><given-names>Jean-Pierre</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4533-4114</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Sorbonne Universités, UPMC Univ. Paris 06, CNRS-INSU,
Laboratoire d'Océanographie de Villefranche, 181 chemin du Lazaret,
06230 Villefranche-sur-mer, France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Global Change Department, IMEDEA (CSIC-UIB), Instituto Mediterraneo de
Estudios Avanzados, C/Miquel Marques 21, 07190 Esporles, Mallorca, Spain</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institute for Sustainable Development and International Relations, Sciences Po, 27 rue Saint Guillaume, 75007 Paris, France</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">T. Erin Cox (erincox@hawaii.edu)</corresp></author-notes><pub-date><day>13</day><month>April</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>7</issue>
      <fpage>2179</fpage><lpage>2194</lpage>
      <history>
        <date date-type="received"><day>15</day><month>December</month><year>2015</year></date>
           <date date-type="rev-request"><day>18</day><month>January</month><year>2016</year></date>
           <date date-type="rev-recd"><day>22</day><month>March</month><year>2016</year></date>
           <date date-type="accepted"><day>2</day><month>April</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016.html">This article is available from https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016.pdf</self-uri>


      <abstract>
    <p>Seagrass is expected to benefit from increased carbon availability under
future ocean acidification. This hypothesis has been little tested by in situ
manipulation. To test for ocean acidification effects on seagrass meadows
under controlled CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>/pH conditions, we used a Free Ocean Carbon Dioxide
Enrichment (FOCE) system which allows for the manipulation of pH as
continuous offset from ambient. It was deployed in a <italic>Posidonia</italic> oceanica meadow
at 11 m depth in the Northwestern Mediterranean Sea. It consisted of two benthic
enclosures, an experimental and a control unit both 1.7 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>, and an
additional reference plot in the ambient environment (2 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to account for
structural artifacts. The meadow was monitored from April to November 2014.
The pH of the experimental enclosure was lowered by 0.26 pH units for the
second half of the 8-month study. The greatest magnitude of change in
<italic>P. oceanica</italic> leaf biometrics, photosynthesis, and leaf growth accompanied seasonal
changes recorded in the environment and values were similar between the two
enclosures. Leaf thickness may change in response to lower pH but this
requires further testing. Results are congruent with other short-term and
natural studies that have investigated the response of <italic>P. oceanica</italic> over a wide range of
pH. They suggest any benefit from ocean acidification, over the next century
(at a pH of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7.7 on the total scale), on <italic>Posidonia</italic> physiology and growth may be
minimal and difficult to detect without increased replication or longer
experimental duration. The limited stimulation, which did not surpass any
enclosure or seasonal effect, casts doubts on speculations that elevated
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> would confer resistance to thermal stress and increase the buffering
capacity of meadows.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Ocean carbonate chemistry is being altered in ways that may affect future
ocean ecology. The ocean absorbs carbon dioxide (CO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from the
atmosphere which increases the concentrations of inorganic carbon and
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and decreases pH in a process referred to as ocean acidification.
Surface ocean pH has decreased by 0.1 units since the beginning of the
industrial era and a further decline (0.06 to 0.32 units) is projected over
the next century (Ciais et al., 2013). Through this process, the relative
proportions of dissolved inorganic carbon species are concurrently being
altered. By 2100, bicarbonate (HCO<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, already widely available,
will increase along with CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, which will have the largest proportional
increase from present-day levels. An increase in carbon availability may
benefit some marine producers (Koch et al., 2013). In contrast, the
concentration of carbonate ions (CO<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> needed by calcifying
organisms will decrease. Thus, ocean acidification can alter competitive
interactions which may cascade to alterations at the ecosystem level.</p>
      <p><?xmltex \hack{\newpage}?>Seagrass meadows rank as one of the most productive ecosystems on Earth
(Duarte et al., 2010; Duarte and Chiscano, 1999). They are highly valued for
their ability to improve water quality, stabilize sediment, and provide
habitat for a diversity of organisms. Human-driven changes to the seawater
clarity and quality (e.g. eutrophication, ocean warming) are often related
to meadow decline (Jordà et al., 2012; Waycott et al., 2009). However,
these habitat-forming seagrasses are thought to benefit from ocean
acidification because they are able to use both CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCO<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
for photosynthesis but, with a higher affinity for CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and are often
found to be carbon-limited (Invers et al., 2001; Koch et al., 2013).</p>
      <p>Experiments under elevated CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> have shown an increase in seagrass
photosynthesis (Apostolaki et al., 2010; Invers et al., 1997; Jiang et al.,
2010; Ow et al., 2015; Zimmerman et al., 1997), below-ground growth
(Hall-Spencer et al., 2008; Zimmerman et al., 1997; Russell et al., 2013)
and flowering frequency (Palacios and Zimmerman, 2007). Yet the majority of
these studies were conducted in the laboratory over relatively short
durations with single taxa or small groups of taxa isolated from their
surroundings. Although studies along carbon dioxide vents allow for a whole
ecosystem approach, the high spatial and temporal variability in CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
levels hampers the determination of a reliable dose-response relationship
(Hall-Spencer et al., 2008; Kerrison et al., 2011). To the best of our
knowledge, only Campbell and Fourqurean (2011, 2013a, 2014) have manipulated
partial pressure of carbon dioxide (<inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> levels in a contained (ie. as
opposed to free flow CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> bubbling) manner  in situ within a <italic>Thalassia</italic> meadow to test the
response of seagrass to ocean acidification. After 6 months of exposure to
lowered pH (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.3 from mean ambient), the seagrass had increased
non-structural carbohydrate content by 29 % in below-ground structures
(Campbell and Fourqurean 2014). This finding generally supports the
hypothesis that plant production will be stimulated from the increased
carbon availability.</p>
      <p><italic>Posidonia oceanica</italic> is the foundation species for mono-specific meadows in the Mediterranean
Sea where it covers up to 23 % of shallow waters (0–50 m; Pasqualini et
al., 1998) and provide services valued at
172 € m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(Vassallo et al., 2013). These plants are largely dependent upon abiotic
factors as evident by its seasonal growth and physiology (Alcoverro et al.,
1995, 1998; Bay, 1984; Duarte, 1989). They have been studied under a range
of pH in the laboratory as well as along pH gradients near CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vents
(Invers et al., 1997, 2001, 2002; Hall-Spencer et al., 2008; Cox et
al., 2015). Around natural CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vents in Ischia (Italy), <italic>P. oceanica</italic> biomass was
greatest at the station nearest the CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> source with a mean pH of
7.6 and minimum of 6.98 (on the total scale, pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>, Hall-Spencer et al., 2008). Indeed, <italic>P. oceanica</italic> has a C3
photosynthetic pathway that is hypothesized to benefit from increased carbon
availability and its photosynthesis is not saturated with respect to
dissolved inorganic carbon at natural concentrations in seawater (Invers et
al., 1997, 2001). This is evident by their enhanced productivity in the
laboratory under a pH range from 9.0 to 7.9 and has been attributed to a
less efficient use of widely available HCO<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and their reliance on
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> for about 50 % of carbon for photosynthesis  (Invers et
al., 1997, 2001). External carbonic anhydrase acts to dehydrate
HCO<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> to CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> which enters the cell by a diffusive process
(Invers et  al., 2001). Thus CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> limitation depends upon the thickness of
the boundary layer and can also occur at high pH with slow diffusion rates
(Invers et al., 2001). However, the extent of the stimulation at <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
levels projected for the coming decades appears limited (Cox et al., 2015;
Invers et al., 2002). In addition, the environment and species dynamics in
meadows are complex and interactions can alter outcomes. For example, the
leaves and roots are colonized by small invertebrates and epiphytic algae
(Borowitzka et al., 2006). These associated species, many sensitive to
dissolution, compete with the plants for resources (Cebrián et al.,
1999; Martin et al., 2008; Sand-Jensen et al., 1985). A laboratory
investigation of this potential interaction under two elevated <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
levels (pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> 7.7 and 7.3) was performed (Cox et al.,
2015). Despite a loss of calcified photosynthetic epiphytes at pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> 7.7,
the effect on shoot productivity was limited and seagrass photosynthesis
(without epiphytes) was only stimulated at pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> of 7.3, a value unlikely
to occur in the Mediterranean Sea in the next century (Cox et al., 2015).
The long-lived plants, however, were maintained for a relatively short
duration of 6 weeks and only under the irradiance, temperature, and
nutrient conditions of February to March. From these studies it is difficult
to predict the impact of ocean acidification on <italic>P. oceanica</italic>.</p>
      <p>Any alteration in <italic>P. oceanica</italic> productivity or abundance will likely have repercussions
to meadow function. Therefore the aim of the present study was to test the
hypothesis that Mediterranean seagrass, <italic>P. oceanica,</italic> will benefit from ocean
acidification. We tested this hypothesis in situ  with a Free Ocean Carbon Dioxide
Enrichment (FOCE) system (see Gattuso et al., 2014) which consisted of two
partially open enclosures that were deployed in the Bay of Villefranche
(France) for 8 months (April–November 2014). The pH was manipulated
continuously, in one enclosure, at a <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.26 pH unit offset from ambient
between June and November. Before and during pH manipulation, macrophyte
abundance, <italic>Posidonia</italic> leaf biometrics, photosynthesis, and growth were measured and
environmental conditions were monitored.</p>
</sec>
<sec id="Ch1.S2">
  <title>Method</title>
<sec id="Ch1.S2.SS1">
  <title>Experimental setup and system function</title>
      <p>This study used the European FOCE (eFOCE) system, an autonomous system which
allows for the  in situ manipulation of pH in benthic enclosures as an offset from
ambient pH (Gattuso et al., 2014). The system was deployed in the Bay of
Villefranche, approximately 300 m from the Laboratoire d'Océanographie
de Villefranche (NW Mediterranean Sea, France; 43<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>40.73<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N,
07<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>19.39<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Fig. 1). The eFOCE engineering design
consisted of a surface buoy and two underwater benthic enclosures (Fig. 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Schematic of the system and study design (left), see text for
details;
(right) the pH (total scale) inside the enclosures and in ambient during the
week-long transition to the targeted offset (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.25 units).</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016-f01.jpg"/>

        </fig>

      <p>The underwater portion of eFOCE consisted of two clear, 1.7 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> (2 m
long <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1 m width <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.85 m tall) perspex enclosures that were open on the
bottom to partially enclose a portion of a <italic>P. oceanica</italic> meadow. They were located at
11 m depth, were placed end to end approximately 1.5 m apart and faced south.
The pH in one enclosure, referred to as the experimental enclosure, was
lowered by <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.25 units as an offset from ambient pH. The
second enclosure served as a control. A third treatment consisted of an open
fiberglass frame of the same dimensions as the enclosure footprint (2 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
It was placed nearby (3 m north of the experimental enclosure) and
in the same meadow. It is referred to as a reference plot and accounts for
any artifacts from the structure of the enclosures.</p>
      <p>The surface component of eFOCE consisted of a buoy that housed solar panels,
a wind turbine and 12 V batteries that provided energy to the system. It
also housed three CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> tanks and a peristaltic pumping system which drew
surface seawater into a 20 L container inside the buoy where pure CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
was added and mixed until a desired pH was reached (usually between 5.5 and
5.7 pH<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. A Seabird potentiometric 18-S pH sensor was used to monitor
pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> in this surface container.</p>
      <p>The two underwater enclosures (experimental and control) were mostly
enclosed to maintain the desired pH offset, with the exception of two
openings (12 cm) on the upper, side panels. The top of the enclosure could
be removed to allow scuba divers to enter when needed. Each enclosure had 10
openings (8 cm diameter) along the bottom sides that allowed tubes to pass
through. These “injection” tubes passed through each enclosure into the
ambient environment where they were connected to a set of three underwater
brushless centrifugal pumps and a mixing tube (one for each enclosure). For
the experimental enclosure, a hose ran from the surface to depth and
connected the surface low pH container to the underwater mixing tube. A
second peristaltic pump on the buoy controlled the flow rate (up to 0.12 L min<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
of the low-pH water through this hose while the underwater
centrifugal pumps (6.7 L min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> each) continuously brought ambient
seawater into the mixing tube. Each mixing tube also housed a potentiometric
Seabird 18-S pH sensor that monitored pH. By sensing the pH of seawater
before it enters the enclosure, the system, via a feedback loop, could
adjust the CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-saturated seawater pumping rate to maintain seawater
entering the experimental enclosure at the desired pH offset from ambient.
Once seawater reached the subsurface mixing tubes, it then entered the
enclosures via the injection tubes described above, where it was circulated
by another set of centrifugal pumps (4 per chamber; 6.7 L min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> each).
Water could then exit enclosures through the two openings (12 cm diameter)
on the upper side panels. The complete renewal time of seawater in each
enclosure was ca. 1.5 h.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Field sensors and system maintenance</title>
      <p>The environment was characterized using sensors placed inside the enclosures
and placed within 5 m from the reference plot. Sensors were connected by
cables to the surface electronic hub. The surface electronic hub
communicated 2 min averaged data by radio to the laboratory. Underwater
sensors (with their sampling frequency) included four potentiometric Seabird
18-S pH sensors (eight measures in 1 s) located inside each enclosure and in
each mixing tube, three Seabird 37 SMP-ODO CTD with SBE 63 oxygen (O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
optodes one in each enclosure and one nearby in the ambient (one sample,
each, for salinity and temperature every 2 min, two samples for O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
every 2 min), and three LI-COR-192 PAR sensors (2000 irradiance measurements
every 5 s) also located in each enclosure and in the nearby ambient
environment.</p>
      <p>The system required routine maintenance. Scuba divers lightly brushed the
enclosure surfaces and sensor probes at least once per week to remove
sediment and fouling. On four occasions throughout the experiment duration,
CTDs were flushed by a syringe filled with clean seawater to remove any
debris inside the sampling ports. Tubes and pumps on the buoy and subsea
were also cleaned once a week of debris and replaced when heavily fouled.</p>
      <p>The underwater 18-S pH sensors were calibrated one to three times per month
by placing them together in the ambient environment for 45 min, followed by
collection of three, 100 mL syringes of seawater drawn directly next to the
probes. Seawater was immediately returned to the laboratory and pH
determined spectrophotometrically as described in Dickson et al. (2007).
Absorbances at peak wavelengths for purified meta-Cresol Purple (Liu et al.,
2011) were measured using an Ocean Optics<sup>©</sup> spectrophotometer model
USB2000<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>VIS<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>NIR. The pH of seawater samples was determined in triplicate
(SD &lt; 0.008) at 22 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and recomputed at in situ temperature
using the R package seacarb (function pHinsi, Gattuso et al., 2015, seacarb:
seawater carbonate chemistry with R. R package version 3.0.2). The offset
between the probe-sensed value at the time of water collection and
laboratory determined measures was used for correction. In addition, pH
sensors were refreshed every 4 to 6 weeks in a NBS buffer at pH 4 for
45 min.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Timeline</title>
      <p>The experiment was conducted from April to November 2014. The experimental
duration can be divided into three periods: (1) the pre-acidification
period, before pH was manipulated, lasted from 5 April to 11 June; (2) the
transition period from 12 to 21 June, where pH in the experimental enclosure
was slowly lowered by no more than 0.05 units per day until an offset of
approximately <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.25 units was reached and (3) the acidified period from 22
June to 3 November during which pH in the experimental enclosure was
maintained at the targeted offset of <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.25 units. It should be noted that
the pre-acidification period began on 5 April; however, data from all
sensors were available from 15 May.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Environment characterization</title>
      <p>All sensed data were initially screened for quality. Any obvious outliers or
missing data that resulted from system or sensor malfunction were eliminated
from the data set. The mean (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD) pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> and median (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>median
absolute deviation, MAD) diel pH changes for the two enclosures and the
ambient environment were calculated by time period and month.</p>
      <p>Seawater samples for the determination of total alkalinity (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> levels
in each enclosure were taken one to five times per month from May to October
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 11 to 12). Samples (300 mL) were filtered on GF/F membranes (47 mm)
and immediately poisoned with 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L of mercuric chloride (HgCl<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was determined on triplicate 50 mL subsamples by potentiometric
titration on a Metrohm Titrando 888 titrator coupled to a glass electrode
(Metrohm, ecotrode plus) and a thermometer (pt1000). The pH electrode was
calibrated on the total scale using TRIS buffers of salinity 38,
corresponding to salinity in the Bay of Villefranche. Measurements were
carried out at 22 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was calculated as described by
Dickson et al. (2007). During the experiment, standards provided
by A. Dickson (batch 132) were used to check precision (standard deviation)
and accuracy (deviation from the certified value provided by Dickson); which
was 0.889 and 1.04 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 6), respectively. As <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
variations during the experiment were very small, average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD,
experimental enclosure, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 12, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2545.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 8.0 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>;
control enclosure, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 11, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2541.7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 12.2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
was used to calculate all carbonate chemistry
parameters at a high frequency, together with sensed temperature, salinity
and pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>, using seacarb. To calculate carbonate chemistry of the ambient
environment at high frequency, we used an <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value of 2556 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
and the sensed ambient values of temperature, salinity, pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>,
using seacarb. This <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value is the mean for 2014 determined from weekly
measures of seawater collected at 1 m depth station, Point B, within the Bay
(Point B data provided by Service d'Observation Rade de Villefranche and the
Service d'Observation en Milieu Littoral). All these parameters, as well as
the O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration (mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD), median (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>median absolute
deviation, MAD) diel O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> change and photosynthetically active radiation
(PAR, mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD, mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were summarized by
month and by time period for the two enclosures and the reference plot
(ambient).</p>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Shoot density and macrophyte abundance</title>
      <p>After the enclosures had been deployed on the meadow for 4 weeks and
before the acidification period, scuba divers counted the number of shoots
within each treatment. Shoot density was determined twice by different
divers and values were averaged, except for the experimental treatment where
an observer error was made and one count was eliminated. Permanent quadrats
were then used to determine any change in shoot density through time. On 11
April, three 0.25 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.25 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> permanent quadrats were haphazardly placed
inside each enclosure and in the reference plot. The number of shoots per
quadrat was then determined every 2 to 4 weeks throughout the experiment.</p>
      <p>Percentage cover of benthic macrophytes was estimated every two to four
weeks in three to five haphazardly placed, but not overlapping, 0.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.5 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>
quadrats within each treatment. The quadrats were also divided into
four smaller squares 0.25 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.25 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> to assist with estimation. Prior to
estimation, researchers practiced estimates on the same quadrat location to
inter-calibrate and limit observer bias. On some occasions, the cover and
shoot density could not be estimated in all 9 to 15 quadrat locations in 1 day. In these instances, divers returned to the treatments within 15 days (most
within 8 days) to complete sampling.</p>
</sec>
<sec id="Ch1.S2.SS6">
  <title>Leaf biometrics</title>
      <p>The number of leaves per shoot, and leaf length, area, thickness and
toughness were monitored several times per month from April to November,
before and during the acidification period. On these occasions, scuba divers
used a tape measure to measure the leaf length and counted the number of
leaves per shoot for five to fifteen shoots per enclosure and plot. In
addition, approximately every four weeks from 1 August, divers collected
eight mature, six intermediate and two to four young leaves from each
enclosure and from the reference plot. To limit destructive sampling yet get
a baseline measurement, on 27 June (near the start of the acidification
period) leaves of about the same age were collected nearby. All leaves were
collected from different shoots and taken at their base above the meristem.
They were brought back to the laboratory and their length, width, and
thickness were measured with a tape measure and caliper. The width and thickness
was measured at the middle of the length of each leaf. On three occasions
(in July, September, and October), the toughness of each leaf was determined
in the middle of the leaf length with a penetrometer (see Cherrett, 1968).</p>
      <p>For all leaf biometric parameters, data collected over several days were
pooled into one data set for a comparison by month and among treatments
(experimental, control and reference plot). Lab and field determined leaf
lengths were combined and averaged by month into a leaf length parameter
that is included graphically. The leaf area is included because it is a
frequent meadow descriptor (Pergent-Martini et al., 2005). The leaf length,
thickness and toughness were investigated for relatedness with a scatter
plot.</p>
</sec>
<sec id="Ch1.S2.SS7">
  <title>Fluorescence, photosynthesis, and respiration</title>
      <p>A diving pulse amplitude modulated fluorometer (diving-PAM, Walz, Germany)
equipped with a red light emitting diode and an internal halogen lamp to
provide actinic light was used to measure the fluorescence in illuminated
and dark-adapted leaves  in situ throughout the experiment. These fluorescence
values were used to produce rapid light curves (RLCs, <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR, relative electron
transport rate  vs. actinic light) and dark-adapted quantum yields (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="italic">υ</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p>All fluorescence and photosynthesis measures were performed on a randomly
selected secondary leaf from enclosures and reference plot. Dark-adapted
yields and RLCs were measured in situ between 10:00 and 12:00 LT (local time) over two to
three consecutive days to produce a sample size of three to ten leaves per
enclosure and reference for May (pre-acidification), July, September, and
October (acidification period for experimental enclosure). For all
fluorescence measures, the fiber optic cable was attached 8 cm above the
leaf meristem and held at a standard distance of 3 mm and at a 90<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
angle from the blade.</p>
      <p>RLCs were produced following the procedures outlined in Cox and Smith (2015).
The actinic irradiance levels ranged up to 895 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
and were applied on the leaf surface for 10 s followed by a 0.8 s
saturating pulse. Actinic range was also adjusted by month to account for
the changing abilities of plants and corrected each time for battery
decline. We determined the absorption factor (AF), used in <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR calculations,
following the methods and assumptions described in Beer and Björk (2000).
Measurements were conducted one to three times each sampled month
and monthly averages were used in calculations. Curves were fitted with the
exponential model proposed by Platt et al. (1980). Parameters derived from
the curves include (1) <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>, the initial slope before the onset of
saturation (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol electrons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>/<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
(2) the relative maximum electron transport rate, <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>max</mml:mtext></mml:msub></mml:math></inline-formula>
(<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol electrons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and (3) <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, optimal irradiance
for maximal electron transport (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> which is
determined by the equation <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>r</mml:mi></mml:mrow></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>max</mml:mtext></mml:msub></mml:math></inline-formula>/<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>.</p>
      <p>For dark-adapted quantum yield, leaves were placed in the dark for 5 min using the dark-adapter and were exposed to a 0.8 s white
saturating light pulse (saturation intensity setting of 8). Then the maximum
PSII quantum yield was calculated using the equation in Genty et al. (1989) for
dark adaption.</p>
      <p>In addition, the photosynthesis vs. irradiance (PE) curves of experimental
and control leaf segments were produced in the laboratory using O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
evolution within a series of incubations. These incubations were performed
over two consecutive days in September and November to produce four PE curves
per enclosure each month. Leaf segments (5 cm) collected from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 cm length leaf were collected from the enclosures in the morning and
incubated in the afternoon (13:00–19:00 LT). Immediately after
collection, leaves were stored underwater in plastic bags, and transported to
the laboratory in a dark mesh bag. Leaves were held for up to 3 h in dim
light within a temperature-controlled laboratory (20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) in
two open top cylindrical aquaria (1.5 L). Ambient water from the nearby bay
was pumped into two header tanks that fed the aquaria and allowed excess
water to overflow into a drainage basin. The pH in one header tank was
maintained at a pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7.8, corresponding to pH levels
in the experimental enclosure by metered additions of pure CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
controlled by a pH-stat system (IKS, Aquastar Aquatic Products).</p>
      <p>After carefully removing all epiphytes, segments were individually placed
inside 60 mL biological oxygen demand (BOD) bottles submerged into a 50 L
aquarium maintained 1 to 2 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C to the mean monthly seawater
temperature at the time of collection (21.2 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.2 SD).
BOD bottles were filled between each incubation with fresh seawater
from the respective header tank (ambient, or lowered pH) with a stirrer
below. Light was provided at a 90<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> angle to the leaf surface
by a 250 W metal-halide lamp and adjusted to nine increasing irradiance
levels (5 to 200 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> measured directly at
the leaf surface). This range of irradiance is within and above irradiance
observed at the depth of collection. Plants were maintained at each
irradiance or in darkness (to measure respiration, <inline-formula><mml:math display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>) for 15–30 min while
the concentration of O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was continuously monitored with a PreSens OXY-4
O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> meter with PSt3 fiber-optic mini-sensors. After the incubations,
leaf segments were ground in a chilled room using a glass homogenizer with
90 % acetone that had been previously chilled for 12 h. The extract was
left for 24 h in darkness, centrifuged at 3000 rpm for 15 min, and the
absorbance of the supernatant measured in quartz-glass cuvette with a UV/VIS
spectrophotometer (Lambda 2, Perkin 366 Elmer). The concentrations of Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> were determined by measuring the absorbance at 647 and 664 nm and the
concentrations calculated from the equations in Jeffrey and Humphrey (1975).</p>
      <p>Rates of changes in O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> normalized to total chlorophyll (Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>)
were plotted against irradiance levels. Parameters of the PE curves were
estimated using a hyperbolic tangent model (Jassby and Platt, 1976),
assuming that <inline-formula><mml:math display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> is similar in the light and dark:
            <disp-formula id="Ch1.Ex1"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mtext>net</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>P</mml:mi><mml:mtext>g max</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:mtext>tanh</mml:mtext><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi>R</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mtext>net</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>: rate of net photosynthesis (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (mg Chl)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> min<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mtext>g max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, rate of maximal gross photosynthesis (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
(mg Chl)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> min<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula>, irradiance (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, irradiance at which <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> intersects <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mtext>g max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>, respiration rate.</p>
      <p>The initial slope, <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (mg Chl)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>/ <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
was calculated as <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mtext>g max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the irradiance at which gross photosynthesis equals respiration
and above which plants exhibit a positive net photosynthesis, was determined
from <inline-formula><mml:math display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>/<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS8">
  <title>Growth and biomass</title>
      <p>Leaf production and leaf plastochrone interval were determined using the
Zieman method modified by Short and Duarte (2001). Three to eight shoots in
both enclosures and in the reference plot were marked with a plastic tag
with a unique number in July, August, and September. A hypodermic needle was
used to punch a hole in the meristem region. These tagged shoots were again
located 33 to 46 days later. The distance from the puncture to the meristem was
measured and any new leaves that lacked a puncture were enumerated. Using
these methods, it was possible to calculate the number of days to produce a
new leaf (plastochrone interval) and leaf production per day for each shoot.
Leaf production incorporates the new length added to the shoot from both
the newly produced leaf (or leaves) and from the growth of older leaves.</p>
      <p>Above-ground and below-ground biomass was determined for each enclosure and
for the reference plot at the conclusion of the study. A fourth 2 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>
area was also sampled for biomass in a nearby seagrass habitat located
approximately 6 m from the enclosures. This area was added to further
account for natural spatial variation. Three to five, 10 cm diameter cores
of 12 cm height were hammered into haphazardly selected locations within the
treatment area. They were brought back to the laboratory, stored in 5 %
formalin, and later sorted into above-ground and below-ground plant parts,
blotted dry, and weighed. A one-way ANOVA was used to test for differences
in above- and below-ground biomass when data met parametric requirements.</p>
</sec>
<sec id="Ch1.S2.SS9">
  <title>Pseudoreplication</title>
      <p>Samples were collected or measured inside the plot or enclosure through
time, often both before and after the pH manipulation. Thus the replication
is equal to one for each treatment. True replication was sacrificed at the
expense of controlling pH as an offset, at the spatial scale of the plants.
Traditional inferential statistics could, therefore, not be rigorously
applied and we compare results graphically, paying careful attention to any
divergence in values between the enclosures and the reference plot.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Environment characterization</title>
      <p>The pH in the experimental enclosure was maintained at a <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.26 unit offset
from the control enclosure during the acidification period (Table 1). Values
summarized by month showed that the difference between the two enclosures
was maintained close to the targeted offset (range: <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.22 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.29 pH
units). Before the pH was manipulated the offset between enclosures was
smaller, <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.1 to 0.06 pH units.</p>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T1" orientation="landscape"><caption><p>A comparison of the carbonate chemistry and diel changes within the
ambient and enclosures: the mean (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>standard deviation, SD) pH (on the
total scale), the maintained pH offset between experimental and control
enclosures as a difference (Diff), the partial pressure of carbon dioxide
(<inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and the median (Med <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> median absolute deviation, MAD) diel
pH and oxygen (O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> change for each month and the period before and
during the acidification.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.69}[.69]?><oasis:tgroup cols="30">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right" colsep="1"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:colspec colnum="13" colname="col13" align="right"/>
     <oasis:colspec colnum="14" colname="col14" align="right"/>
     <oasis:colspec colnum="15" colname="col15" align="right"/>
     <oasis:colspec colnum="16" colname="col16" align="right"/>
     <oasis:colspec colnum="17" colname="col17" align="right" colsep="1"/>
     <oasis:colspec colnum="18" colname="col18" align="right"/>
     <oasis:colspec colnum="19" colname="col19" align="right"/>
     <oasis:colspec colnum="20" colname="col20" align="right"/>
     <oasis:colspec colnum="21" colname="col21" align="right"/>
     <oasis:colspec colnum="22" colname="col22" align="right"/>
     <oasis:colspec colnum="23" colname="col23" align="right"/>
     <oasis:colspec colnum="24" colname="col24" align="right" colsep="1"/>
     <oasis:colspec colnum="25" colname="col25" align="right"/>
     <oasis:colspec colnum="26" colname="col26" align="right"/>
     <oasis:colspec colnum="27" colname="col27" align="right"/>
     <oasis:colspec colnum="28" colname="col28" align="right"/>
     <oasis:colspec colnum="29" colname="col29" align="right"/>
     <oasis:colspec colnum="30" colname="col30" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry rowsep="1" namest="col4" nameend="col11" align="center" colsep="1">pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry rowsep="1" namest="col12" nameend="col17" align="center" colsep="1"><inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm) </oasis:entry>  
         <oasis:entry rowsep="1" colname="col18"/>  
         <oasis:entry rowsep="1" namest="col19" nameend="col24" align="center" colsep="1"><inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula> Diel pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry rowsep="1" namest="col25" nameend="col30" align="center"><inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula> Diel O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry namest="col4" nameend="col5" align="center">Ambient </oasis:entry>  
         <oasis:entry namest="col6" nameend="col7" align="center">Control </oasis:entry>  
         <oasis:entry namest="col8" nameend="col9" align="center">Experimental </oasis:entry>  
         <oasis:entry namest="col10" nameend="col11" align="center" colsep="1">Diff </oasis:entry>  
         <oasis:entry namest="col12" nameend="col13" align="center">Ambient </oasis:entry>  
         <oasis:entry namest="col14" nameend="col15" align="center">Control </oasis:entry>  
         <oasis:entry namest="col16" nameend="col17" align="center" colsep="1">Experimental </oasis:entry>  
         <oasis:entry colname="col18"><inline-formula><mml:math display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry namest="col19" nameend="col20" align="center">Ambient </oasis:entry>  
         <oasis:entry namest="col21" nameend="col22" align="center">Control </oasis:entry>  
         <oasis:entry namest="col23" nameend="col24" align="center" colsep="1">Experimental </oasis:entry>  
         <oasis:entry namest="col25" nameend="col26" align="center">Ambient </oasis:entry>  
         <oasis:entry namest="col27" nameend="col28" align="center">Control </oasis:entry>  
         <oasis:entry namest="col29" nameend="col30" align="center">Experimental </oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Months in  Period</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">Samples</oasis:entry>  
         <oasis:entry colname="col4">Mean</oasis:entry>  
         <oasis:entry colname="col5">SD</oasis:entry>  
         <oasis:entry colname="col6">Mean</oasis:entry>  
         <oasis:entry colname="col7">SD</oasis:entry>  
         <oasis:entry colname="col8">Mean</oasis:entry>  
         <oasis:entry colname="col9">SD</oasis:entry>  
         <oasis:entry colname="col10">Mean</oasis:entry>  
         <oasis:entry colname="col11">SD</oasis:entry>  
         <oasis:entry colname="col12">Mean</oasis:entry>  
         <oasis:entry colname="col13">SD</oasis:entry>  
         <oasis:entry colname="col14">Mean</oasis:entry>  
         <oasis:entry colname="col15">SD</oasis:entry>  
         <oasis:entry colname="col16">Mean</oasis:entry>  
         <oasis:entry colname="col17">SD</oasis:entry>  
         <oasis:entry colname="col18">Days</oasis:entry>  
         <oasis:entry colname="col19">Med</oasis:entry>  
         <oasis:entry colname="col20">MAD</oasis:entry>  
         <oasis:entry colname="col21">Med</oasis:entry>  
         <oasis:entry colname="col22">MAD</oasis:entry>  
         <oasis:entry colname="col23">Med</oasis:entry>  
         <oasis:entry colname="col24">MAD</oasis:entry>  
         <oasis:entry colname="col25">Med</oasis:entry>  
         <oasis:entry colname="col26">MAD</oasis:entry>  
         <oasis:entry colname="col27">Med</oasis:entry>  
         <oasis:entry colname="col28">MAD</oasis:entry>  
         <oasis:entry colname="col29">Med</oasis:entry>  
         <oasis:entry colname="col30">MAD</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Before</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>  
         <oasis:entry colname="col9"/>  
         <oasis:entry colname="col10"/>  
         <oasis:entry colname="col11"/>  
         <oasis:entry colname="col12"/>  
         <oasis:entry colname="col13"/>  
         <oasis:entry colname="col14"/>  
         <oasis:entry colname="col15"/>  
         <oasis:entry colname="col16"/>  
         <oasis:entry colname="col17"/>  
         <oasis:entry colname="col18"/>  
         <oasis:entry colname="col19"/>  
         <oasis:entry colname="col20"/>  
         <oasis:entry colname="col21"/>  
         <oasis:entry colname="col22"/>  
         <oasis:entry colname="col23"/>  
         <oasis:entry colname="col24"/>  
         <oasis:entry colname="col25"/>  
         <oasis:entry colname="col26"/>  
         <oasis:entry colname="col27"/>  
         <oasis:entry colname="col28"/>  
         <oasis:entry colname="col29"/>  
         <oasis:entry colname="col30"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">May</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">11 840</oasis:entry>  
         <oasis:entry colname="col4">8.10</oasis:entry>  
         <oasis:entry colname="col5">0.03</oasis:entry>  
         <oasis:entry colname="col6">8.12</oasis:entry>  
         <oasis:entry colname="col7">0.06</oasis:entry>  
         <oasis:entry colname="col8">8.01</oasis:entry>  
         <oasis:entry colname="col9">0.05</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.10</oasis:entry>  
         <oasis:entry colname="col11">0.03</oasis:entry>  
         <oasis:entry colname="col12">374</oasis:entry>  
         <oasis:entry colname="col13">30</oasis:entry>  
         <oasis:entry colname="col14">358</oasis:entry>  
         <oasis:entry colname="col15">55</oasis:entry>  
         <oasis:entry colname="col16">477</oasis:entry>  
         <oasis:entry colname="col17">74</oasis:entry>  
         <oasis:entry colname="col18">17</oasis:entry>  
         <oasis:entry colname="col19">0.08</oasis:entry>  
         <oasis:entry colname="col20">0.02</oasis:entry>  
         <oasis:entry colname="col21">0.10</oasis:entry>  
         <oasis:entry colname="col22">0.06</oasis:entry>  
         <oasis:entry colname="col23">0.12</oasis:entry>  
         <oasis:entry colname="col24">0.05</oasis:entry>  
         <oasis:entry colname="col25">52.0</oasis:entry>  
         <oasis:entry colname="col26">11.0</oasis:entry>  
         <oasis:entry colname="col27">68.0</oasis:entry>  
         <oasis:entry colname="col28">7.0</oasis:entry>  
         <oasis:entry colname="col29">82.0</oasis:entry>  
         <oasis:entry colname="col30">14.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">June</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">8119</oasis:entry>  
         <oasis:entry colname="col4">8.11</oasis:entry>  
         <oasis:entry colname="col5">0.04</oasis:entry>  
         <oasis:entry colname="col6">8.04</oasis:entry>  
         <oasis:entry colname="col7">0.05</oasis:entry>  
         <oasis:entry colname="col8">8.10</oasis:entry>  
         <oasis:entry colname="col9">0.06</oasis:entry>  
         <oasis:entry colname="col10">0.06</oasis:entry>  
         <oasis:entry colname="col11">0.05</oasis:entry>  
         <oasis:entry colname="col12">369</oasis:entry>  
         <oasis:entry colname="col13">38</oasis:entry>  
         <oasis:entry colname="col14">443</oasis:entry>  
         <oasis:entry colname="col15">63</oasis:entry>  
         <oasis:entry colname="col16">378</oasis:entry>  
         <oasis:entry colname="col17">65</oasis:entry>  
         <oasis:entry colname="col18">11</oasis:entry>  
         <oasis:entry colname="col19">0.10</oasis:entry>  
         <oasis:entry colname="col20">0.03</oasis:entry>  
         <oasis:entry colname="col21">0.15</oasis:entry>  
         <oasis:entry colname="col22">0.04</oasis:entry>  
         <oasis:entry colname="col23">0.16</oasis:entry>  
         <oasis:entry colname="col24">0.02</oasis:entry>  
         <oasis:entry colname="col25">72.0</oasis:entry>  
         <oasis:entry colname="col26">9.0</oasis:entry>  
         <oasis:entry colname="col27">91.0</oasis:entry>  
         <oasis:entry colname="col28">8.0</oasis:entry>  
         <oasis:entry colname="col29">101.0</oasis:entry>  
         <oasis:entry colname="col30">9.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Acidification</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>  
         <oasis:entry colname="col9"/>  
         <oasis:entry colname="col10"/>  
         <oasis:entry colname="col11"/>  
         <oasis:entry colname="col12"/>  
         <oasis:entry colname="col13"/>  
         <oasis:entry colname="col14"/>  
         <oasis:entry colname="col15"/>  
         <oasis:entry colname="col16"/>  
         <oasis:entry colname="col17"/>  
         <oasis:entry colname="col18"/>  
         <oasis:entry colname="col19"/>  
         <oasis:entry colname="col20"/>  
         <oasis:entry colname="col21"/>  
         <oasis:entry colname="col22"/>  
         <oasis:entry colname="col23"/>  
         <oasis:entry colname="col24"/>  
         <oasis:entry colname="col25"/>  
         <oasis:entry colname="col26"/>  
         <oasis:entry colname="col27"/>  
         <oasis:entry colname="col28"/>  
         <oasis:entry colname="col29"/>  
         <oasis:entry colname="col30"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">June</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">6226</oasis:entry>  
         <oasis:entry colname="col4">8.05</oasis:entry>  
         <oasis:entry colname="col5">0.03</oasis:entry>  
         <oasis:entry colname="col6">8.02</oasis:entry>  
         <oasis:entry colname="col7">0.04</oasis:entry>  
         <oasis:entry colname="col8">7.79</oasis:entry>  
         <oasis:entry colname="col9">0.13</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.23</oasis:entry>  
         <oasis:entry colname="col11">0.13</oasis:entry>  
         <oasis:entry colname="col12">430</oasis:entry>  
         <oasis:entry colname="col13">42</oasis:entry>  
         <oasis:entry colname="col14">470</oasis:entry>  
         <oasis:entry colname="col15">57</oasis:entry>  
         <oasis:entry colname="col16">868</oasis:entry>  
         <oasis:entry colname="col17">318</oasis:entry>  
         <oasis:entry colname="col18">9</oasis:entry>  
         <oasis:entry colname="col19">0.12</oasis:entry>  
         <oasis:entry colname="col20">0.03</oasis:entry>  
         <oasis:entry colname="col21">0.12</oasis:entry>  
         <oasis:entry colname="col22">0.04</oasis:entry>  
         <oasis:entry colname="col23">0.27</oasis:entry>  
         <oasis:entry colname="col24">0.08</oasis:entry>  
         <oasis:entry colname="col25">72.0</oasis:entry>  
         <oasis:entry colname="col26">7.0</oasis:entry>  
         <oasis:entry colname="col27">85.0</oasis:entry>  
         <oasis:entry colname="col28">10.0</oasis:entry>  
         <oasis:entry colname="col29">92.0</oasis:entry>  
         <oasis:entry colname="col30">11.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">July</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">21 007</oasis:entry>  
         <oasis:entry colname="col4">8.03</oasis:entry>  
         <oasis:entry colname="col5">0.03</oasis:entry>  
         <oasis:entry colname="col6">8.03</oasis:entry>  
         <oasis:entry colname="col7">0.06</oasis:entry>  
         <oasis:entry colname="col8">7.79</oasis:entry>  
         <oasis:entry colname="col9">0.12</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.24</oasis:entry>  
         <oasis:entry colname="col11">0.11</oasis:entry>  
         <oasis:entry colname="col12">454</oasis:entry>  
         <oasis:entry colname="col13">46</oasis:entry>  
         <oasis:entry colname="col14">453</oasis:entry>  
         <oasis:entry colname="col15">81</oasis:entry>  
         <oasis:entry colname="col16">870</oasis:entry>  
         <oasis:entry colname="col17">254</oasis:entry>  
         <oasis:entry colname="col18">30</oasis:entry>  
         <oasis:entry colname="col19">0.09</oasis:entry>  
         <oasis:entry colname="col20">0.02</oasis:entry>  
         <oasis:entry colname="col21">0.17</oasis:entry>  
         <oasis:entry colname="col22">0.05</oasis:entry>  
         <oasis:entry colname="col23">0.27</oasis:entry>  
         <oasis:entry colname="col24">0.06</oasis:entry>  
         <oasis:entry colname="col25">60.5</oasis:entry>  
         <oasis:entry colname="col26">14.0</oasis:entry>  
         <oasis:entry colname="col27">95.5</oasis:entry>  
         <oasis:entry colname="col28">18.0</oasis:entry>  
         <oasis:entry colname="col29">100.5</oasis:entry>  
         <oasis:entry colname="col30">18.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">August</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">22 682</oasis:entry>  
         <oasis:entry colname="col4">8.00</oasis:entry>  
         <oasis:entry colname="col5">0.03</oasis:entry>  
         <oasis:entry colname="col6">8.04</oasis:entry>  
         <oasis:entry colname="col7">0.07</oasis:entry>  
         <oasis:entry colname="col8">7.81</oasis:entry>  
         <oasis:entry colname="col9">0.12</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.23</oasis:entry>  
         <oasis:entry colname="col11">0.09</oasis:entry>  
         <oasis:entry colname="col12">489</oasis:entry>  
         <oasis:entry colname="col13">42</oasis:entry>  
         <oasis:entry colname="col14">445</oasis:entry>  
         <oasis:entry colname="col15">85</oasis:entry>  
         <oasis:entry colname="col16">834</oasis:entry>  
         <oasis:entry colname="col17">253</oasis:entry>  
         <oasis:entry colname="col18">31</oasis:entry>  
         <oasis:entry colname="col19">0.09</oasis:entry>  
         <oasis:entry colname="col20">0.02</oasis:entry>  
         <oasis:entry colname="col21">0.18</oasis:entry>  
         <oasis:entry colname="col22">0.05</oasis:entry>  
         <oasis:entry colname="col23">0.29</oasis:entry>  
         <oasis:entry colname="col24">0.06</oasis:entry>  
         <oasis:entry colname="col25">55.0</oasis:entry>  
         <oasis:entry colname="col26">8.0</oasis:entry>  
         <oasis:entry colname="col27">77.0</oasis:entry>  
         <oasis:entry colname="col28">12.0</oasis:entry>  
         <oasis:entry colname="col29">86.0</oasis:entry>  
         <oasis:entry colname="col30">12.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">September</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">21 854</oasis:entry>  
         <oasis:entry colname="col4">7.98</oasis:entry>  
         <oasis:entry colname="col5">0.07</oasis:entry>  
         <oasis:entry colname="col6">7.97</oasis:entry>  
         <oasis:entry colname="col7">0.06</oasis:entry>  
         <oasis:entry colname="col8">7.70</oasis:entry>  
         <oasis:entry colname="col9">0.11</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.27</oasis:entry>  
         <oasis:entry colname="col11">0.10</oasis:entry>  
         <oasis:entry colname="col12">521</oasis:entry>  
         <oasis:entry colname="col13">96</oasis:entry>  
         <oasis:entry colname="col14">536</oasis:entry>  
         <oasis:entry colname="col15">87</oasis:entry>  
         <oasis:entry colname="col16">1098</oasis:entry>  
         <oasis:entry colname="col17">288</oasis:entry>  
         <oasis:entry colname="col18">30</oasis:entry>  
         <oasis:entry colname="col19">0.07</oasis:entry>  
         <oasis:entry colname="col20">0.01</oasis:entry>  
         <oasis:entry colname="col21">0.11</oasis:entry>  
         <oasis:entry colname="col22">0.06</oasis:entry>  
         <oasis:entry colname="col23">0.28</oasis:entry>  
         <oasis:entry colname="col24">0.10</oasis:entry>  
         <oasis:entry colname="col25">37.5</oasis:entry>  
         <oasis:entry colname="col26">5.5</oasis:entry>  
         <oasis:entry colname="col27">62.5</oasis:entry>  
         <oasis:entry colname="col28">15.5</oasis:entry>  
         <oasis:entry colname="col29">54.0</oasis:entry>  
         <oasis:entry colname="col30">11.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">October</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">22 420</oasis:entry>  
         <oasis:entry colname="col4">8.01</oasis:entry>  
         <oasis:entry colname="col5">0.04</oasis:entry>  
         <oasis:entry colname="col6">8.00</oasis:entry>  
         <oasis:entry colname="col7">0.04</oasis:entry>  
         <oasis:entry colname="col8">7.70</oasis:entry>  
         <oasis:entry colname="col9">0.13</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.29</oasis:entry>  
         <oasis:entry colname="col11">0.14</oasis:entry>  
         <oasis:entry colname="col12">480</oasis:entry>  
         <oasis:entry colname="col13">52</oasis:entry>  
         <oasis:entry colname="col14">497</oasis:entry>  
         <oasis:entry colname="col15">64</oasis:entry>  
         <oasis:entry colname="col16">1086</oasis:entry>  
         <oasis:entry colname="col17">390</oasis:entry>  
         <oasis:entry colname="col18">31</oasis:entry>  
         <oasis:entry colname="col19">0.06</oasis:entry>  
         <oasis:entry colname="col20">0.02</oasis:entry>  
         <oasis:entry colname="col21">0.09</oasis:entry>  
         <oasis:entry colname="col22">0.04</oasis:entry>  
         <oasis:entry colname="col23">0.29</oasis:entry>  
         <oasis:entry colname="col24">0.08</oasis:entry>  
         <oasis:entry colname="col25">27.0</oasis:entry>  
         <oasis:entry colname="col26">3.0</oasis:entry>  
         <oasis:entry colname="col27">34.0</oasis:entry>  
         <oasis:entry colname="col28">5.0</oasis:entry>  
         <oasis:entry colname="col29">44.0</oasis:entry>  
         <oasis:entry colname="col30">5.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">November</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">5377</oasis:entry>  
         <oasis:entry colname="col4">8.02</oasis:entry>  
         <oasis:entry colname="col5">0.03</oasis:entry>  
         <oasis:entry colname="col6">8.02</oasis:entry>  
         <oasis:entry colname="col7">0.02</oasis:entry>  
         <oasis:entry colname="col8">7.80</oasis:entry>  
         <oasis:entry colname="col9">0.15</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.22</oasis:entry>  
         <oasis:entry colname="col11">0.15</oasis:entry>  
         <oasis:entry colname="col12">469</oasis:entry>  
         <oasis:entry colname="col13">48</oasis:entry>  
         <oasis:entry colname="col14">467</oasis:entry>  
         <oasis:entry colname="col15">22</oasis:entry>  
         <oasis:entry colname="col16">836</oasis:entry>  
         <oasis:entry colname="col17">305</oasis:entry>  
         <oasis:entry colname="col18">10</oasis:entry>  
         <oasis:entry colname="col19">0.04</oasis:entry>  
         <oasis:entry colname="col20">0.01</oasis:entry>  
         <oasis:entry colname="col21">0.06</oasis:entry>  
         <oasis:entry colname="col22">0.03</oasis:entry>  
         <oasis:entry colname="col23">0.09</oasis:entry>  
         <oasis:entry colname="col24">0.05</oasis:entry>  
         <oasis:entry colname="col25">21.0</oasis:entry>  
         <oasis:entry colname="col26">5.5</oasis:entry>  
         <oasis:entry colname="col27">34.0</oasis:entry>  
         <oasis:entry colname="col28">22.5</oasis:entry>  
         <oasis:entry colname="col29">45.5</oasis:entry>  
         <oasis:entry colname="col30">29.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Before</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">24 334</oasis:entry>  
         <oasis:entry colname="col4">8.10</oasis:entry>  
         <oasis:entry colname="col5">0.04</oasis:entry>  
         <oasis:entry colname="col6">8.05</oasis:entry>  
         <oasis:entry colname="col7">0.07</oasis:entry>  
         <oasis:entry colname="col8">8.06</oasis:entry>  
         <oasis:entry colname="col9">0.07</oasis:entry>  
         <oasis:entry colname="col10">0.01</oasis:entry>  
         <oasis:entry colname="col11">0.09</oasis:entry>  
         <oasis:entry colname="col12">380</oasis:entry>  
         <oasis:entry colname="col13">39</oasis:entry>  
         <oasis:entry colname="col14">434</oasis:entry>  
         <oasis:entry colname="col15">85</oasis:entry>  
         <oasis:entry colname="col16">426</oasis:entry>  
         <oasis:entry colname="col17">87</oasis:entry>  
         <oasis:entry colname="col18">34</oasis:entry>  
         <oasis:entry colname="col19">0.09</oasis:entry>  
         <oasis:entry colname="col20">0.02</oasis:entry>  
         <oasis:entry colname="col21">0.14</oasis:entry>  
         <oasis:entry colname="col22">0.06</oasis:entry>  
         <oasis:entry colname="col23">0.16</oasis:entry>  
         <oasis:entry colname="col24">0.07</oasis:entry>  
         <oasis:entry colname="col25">63.5</oasis:entry>  
         <oasis:entry colname="col26">13.0</oasis:entry>  
         <oasis:entry colname="col27">80.5</oasis:entry>  
         <oasis:entry colname="col28">13.5</oasis:entry>  
         <oasis:entry colname="col29">88.0</oasis:entry>  
         <oasis:entry colname="col30">13.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Acidification</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">95 711</oasis:entry>  
         <oasis:entry colname="col4">8.01</oasis:entry>  
         <oasis:entry colname="col5">0.05</oasis:entry>  
         <oasis:entry colname="col6">8.01</oasis:entry>  
         <oasis:entry colname="col7">0.06</oasis:entry>  
         <oasis:entry colname="col8">7.75</oasis:entry>  
         <oasis:entry colname="col9">0.13</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.26</oasis:entry>  
         <oasis:entry colname="col11">0.11</oasis:entry>  
         <oasis:entry colname="col12">483</oasis:entry>  
         <oasis:entry colname="col13">67</oasis:entry>  
         <oasis:entry colname="col14">482</oasis:entry>  
         <oasis:entry colname="col15">86</oasis:entry>  
         <oasis:entry colname="col16">971</oasis:entry>  
         <oasis:entry colname="col17">323</oasis:entry>  
         <oasis:entry colname="col18">132</oasis:entry>  
         <oasis:entry colname="col19">0.08</oasis:entry>  
         <oasis:entry colname="col20">0.02</oasis:entry>  
         <oasis:entry colname="col21">0.14</oasis:entry>  
         <oasis:entry colname="col22">0.06</oasis:entry>  
         <oasis:entry colname="col23">0.28</oasis:entry>  
         <oasis:entry colname="col24">0.14</oasis:entry>  
         <oasis:entry colname="col25">44.0</oasis:entry>  
         <oasis:entry colname="col26">14.5</oasis:entry>  
         <oasis:entry colname="col27">68.5</oasis:entry>  
         <oasis:entry colname="col28">23.5</oasis:entry>  
         <oasis:entry colname="col29">74.0</oasis:entry>  
         <oasis:entry colname="col30">23.0</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <p>The pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> in ambient ranged from a mean of 7.98 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.06 SD) in
September to 8.11 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.04 SD) in June (Table 1). The ambient pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>
was similar to the pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> in the control enclosure, which ranged from 7.97
(<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.07 SD) in September to 8.12 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.06 SD) in June. The
greatest difference between control and ambient, in monthly mean pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>
values was 0.06 units. The differences in <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> reflected the magnitude
of difference in pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>, as <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> levels were rather constant during the
study (see method section).</p>
      <p>The mean O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration was similar in enclosures and in the ambient
(Supplement Table S1). For example, the mean O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD) before
acidification for ambient, control and experimental was 258 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 18,
254 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 34, and 258 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>  2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. In the ambient and
in the enclosures, the O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration fluctuated over the course of
the day (data not shown). After sunset, O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration declined to a
night-time minimum. In the morning, the O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> began to increase to a
daily afternoon maximum; then it declined with decreasing irradiance. Over
the months of the experiment, this diel O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> change ranged from 21 to
72 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the ambient, 34 to 95 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the control
enclosure, and 34.5 to 100.5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the experimental enclosure
(Table 1). The difference in diel change between the ambient and the
enclosures was most likely due to the amplification of a metabolic signal
inside a partially enclosed space (similar to the example of a larger
O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluctuation when a similar sized plant is contained in a
relatively smaller volume of water) as was evidenced by the more similar,
and greater diel change in the two enclosures. The largest difference in
median values between enclosures was 14 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in May, prior to the
perturbation.</p>
      <p>The diel pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> change in the meadow corresponded to the daily change in
O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration. The natural diel pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> for this meadow was evident
from the measures in the ambient which median values show it fluctuated by
0.09 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.02 MAD) and 0.08 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.02 MAD) units per day in the
pre- and acidification period, respectively. The diel change in pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> for
the control enclosure was slightly greater but consistent in the pre- and
during acidification period (0.14 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.06 MAD and 0.14 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.06
MAD). In contrast, the diel pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> change for the experimental enclosure
increased from a median of 0.16 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.06 MAD) before pH manipulation to
0.28 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.14 MAD) during the acidification period.</p>
      <p>Monthly differences were evident particularly for temperature, oxygen
concentration, and PAR (Table S1) but were similar in the ambient, control
and experimental enclosures. For example, the mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD during the
acidification period for temperature in ambient, control and experimental
enclosures was 23.9 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01 (for each) and for PAR,
4.6 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.9, 4.6 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.0, 4.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.7 mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively. Temperature increased approximately by 6 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C from
May through August and declined by 4 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until November. Oxygen concentrations and PAR fluctuated
similarly with higher values in May to August (mean monthly range: 212 to
270 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 4.7 to 7.7 mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and decreases
in September to November (mean monthly range: 193 to 211 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
1.4 to 4.4 mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Shoot density and macrophyte abundance</title>
      <p>Initial shoot densities were similar in both enclosures and reference plot
and ranged from 150 to 175 shoots m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 2). There was no obvious
change in shoot number (as determined in permanent quadrates re-sampled
through time) related to the lowered pH in the experimental enclosure. For
both enclosures and the reference plot, the number of shoots (initially 6 to
27 in permanent quadrats) tended to decline with time.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Macrophyte abundance throughout the experiment;
<bold>(a)</bold> enclosures and reference plot had initially similar <italic>P. oceanica</italic> shoot density m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SE). <bold>(b)</bold> mean shoot
number with time within three permanently located quadrats (0.06 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
per reference plot (top), control (middle) and experimental (bottom)
enclosures. <bold>(c, d, e)</bold> coverage (%) of benthic macrophytes and
unoccupied sediment or rocks (bare space) before and during the acidification
period (<inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis after the dashed vertical line).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016-f02.png"/>

        </fig>

      <p>The reference plot as well as the enclosures had a very low diversity of
benthic macrophytes as measured by estimates conducted within haphazardly
placed quadrats at each sampling interval (Fig. 2). <italic>Posidonia oceanica</italic> was the dominant
species, with a surface cover of 18 to 35 %. <italic>Peyssonnelia</italic>, a red alga, covered between 1
and 11 % of the substratum. Their abundances were similar between months
throughout the experiment. There was a slightly greater percentage of <italic>P. oceanica </italic>in the
experimental enclosure (experimental enclosure, 31.6 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.6 %;
control enclosure, 27.9 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.7 %; reference plot, 28.9 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.3 %)
throughout the experiment duration that did not appear to be
related to the timing of the pH manipulation.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Leaf biometrics</title>
      <p>There was no large difference in shoot height among the enclosures and
reference plot but there were large differences in shoot height between the
sampled months (Fig. 3). A similar monthly pattern in leaf length was
observed between the three treatments, for the minimum, average and maximum
leaf length. From April through August, average leaf length and average
shoot height both increased and then declined between August and September.
For example, the overall average shoot height increased from 40.6 cm in
April to 73.4 cm in August then declined to 24.8 cm in November.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Leaf biometrics (mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SE) before and during the
acidification period for the reference and enclosure plants. Measures through
time: average shoot height <bold>(a)</bold>, leaf length <bold>(b)</bold>, minimum <bold>(c)</bold> and maximum leaf
length <bold>(d)</bold>, number of leaves per shoot <bold>(e)</bold>, leaf area <bold>(f)</bold>, leaf
thickness <bold>(g)</bold>
and leaf toughness <bold>(h)</bold> are shown. The dashed vertical line indicates when the
pH was lowered in the experimental enclosure. Additional leaves were
collected in June from the meadow and are referred to as ambient leaves.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016-f03.png"/>

        </fig>

      <p>Shoots had between 2 and 8 leaves (Fig. 3). The reference and control plants
differed slightly in leaf number per shoot (reference, 5.4 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1 vs.
control, 5.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1), but control and experimental plants (5.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.2)
were highly similar indicating an absence of pH effect. Furthermore,
the number of leaves per shoot in the experimental enclosure did not
consistently increase or decrease after the pH was manipulated. Instead,
leaf number per shoot in enclosures and plot increased during months when
leaf height was lower (April, May and then October, November: 6 to 7) and
tended to be lower in June and August (4 to 5) when leaf height was
elevated.</p>
      <p>Leaf thickness and leaf toughness increased with leaf length. However, leaf
thickness did not appear to be correlated to leaf toughness. Both parameters
varied among the enclosures and reference plot, and between months (Fig. 3).
Leaves in the experimental enclosure were slightly thicker (2.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1 mm)
than leaves in the control enclosure and the reference plot (2.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.08 mm
and 2.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1 mm, respectively). Leaves in control enclosure
and the reference plot for the month of November had a decreased and more
variable thickness. Leaves inside the enclosures appeared to be weaker than
the leaves in the reference plot. Furthermore, leaves appeared weaker in
October compared to July and September. For example, the weakest leaf in
July could withstand 34 g of force as compared to the weakest leaf in
October which could only withstand 12 g of force. The ambient leaf samples
collected in June also had a greater mean value of toughness than the
October values from enclosures and the reference plot.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Fluorescence, photosynthesis, and respiration</title>
      <p>The dark-adapted quantum yield obviously differed by month but not according
to pH (Fig. 4). The overall dark-adapted quantum yield ranged from 0.72 to
0.88 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 69). The mean values were similar in the enclosures and the
reference plot. Mean yield was 0.8, 0.789, and 0.799 for leaves measured in
the experimental, control, and reference treatments, respectively. Yield
values increased over the duration of the experiment.</p>
      <p>The AF factor for the calculation of <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR changed with month. The determined
values (as a mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD) were as follows: May: 74.5; July: 65.0;
September: 69.6 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.5 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 3); October, 54.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.0 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Photosynthetic rapid light curves (RLCs, <bold>a–d</bold>), dark-adapted quantum
yield <bold>(e)</bold>, and the derived RLC parameters <bold>(f–h)</bold> measured on 2nd rank
leaves in enclosures and reference plot before (May) and during (July,
September, and October) the acidification period. Symbols represent the mean
(<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SE) relative electron transport rate (<inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR) at each mean
photosynthetic active radiation (PAR) value. Curved lines represent the
Jassby and Platt (1976) regression based on mean values. The dashed outline
encloses the acidification period.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016-f04.png"/>

        </fig>

      <p>The photosynthetic RLCs in Fig. 4a–d, show that the shape of the curve
changed with month. Leaves from the control and experimental enclosures have
similar <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR values that were slightly lower at elevated irradiance relative
to the leaves in the reference plot.</p>
      <p>The initial slope (<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol electrons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>/ <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
ranged between 0.23 and 0.58 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 57). It decreased
substantially as a function of time (Table S6) from elevated values in May
(0.43 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01) and July (0.48 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01) to lower values in
September (0.31 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01) and October (0.27 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01). Overall (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 57), <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>max</mml:mtext></mml:msub></mml:math></inline-formula> values (in <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol electrons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> ranged from
4.3 to 27.4 and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol photons m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> ranged from
12.0 to 63.6. The leaves from the reference plot had <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>max</mml:mtext></mml:msub></mml:math></inline-formula>
(12.3 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.6) and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (33.7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.0) that were more different than
the leaves from the control (<inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>max</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 10.8 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.7, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 29.8 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.0)
and experimental (<inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 12.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.7,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 30.9 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.7). However, these parameters differed by a
greater amount by month than among plants from the enclosures and the plot.
<inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mo>max⁡</mml:mo></mml:msub></mml:math></inline-formula> values were substantially higher in May (22.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.4) than
in July (10.9 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.8), September (7.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.6), and October
(7.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.8). Overall, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was obviously greater in May (50.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.2)
than in July (23.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.6), September (24.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.1), and
October (28.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.5).</p>
      <p>The parameters of the PE curves of leaves collected from the experimental
and control enclosures also did not greatly differ (Fig. 5). <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mtext>g max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and R were greater for leaves measured in September than
November.</p>
      <p>The mean total concentration of chlorophyll in leaves did not greatly differ
among enclosures. It was 0.36 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04, 0.38 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04 mg Chl cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
in the experimental and control enclosures, respectively. It was
greater in November than in September (0.46 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.03 vs. 0.28 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04 mg Chl cm<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
The Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> : <inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> ratio of leaves from the control
and experimental enclosures did not obviously differ, with an overall Chl
<inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> : <inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> ratio of 0.64.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Photosynthesis vs. irradiance (PE) curves produced from laboratory
incubations of <italic>P. oceanica </italic>leaf segments collected from the
enclosures after two (September, <bold>a</bold>) and four (November, <bold>b</bold>) months of
acidification. The derived parameters from the curves are shown in <bold>(c)</bold>–<bold>(g)</bold>.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS5">
  <title>Growth and biomass</title>
      <p>Leaf production and plastochrone interval of shoots in the reference plot
and in the enclosures appeared to differ (Fig. 6). Differences are most
congruent with an effect caused by the structure of enclosures and not from
the lowered pH. The shoots in the reference plot were able to produce more
leaf material than in the experimental and control enclosures. From July to
September, reference shoots grew new leaf material at a mean rate of 0.89
(<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.06) cm d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> compared to the reference plot and control
enclosure, which both produced 0.66 (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.05 to 0.06) cm d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
Furthermore, reference shoots produced a new leaf in a fewer number of days
than shoots in the experimental and control enclosures. From August to
September, it took 11 days to produce a new leaf in the reference plot while
it took between 23 and 29 days for shoots that grew in the experimental and
control enclosures, respectively. Overall, leaf production (the growth of
all leaves per shoot) was also seasonal. It was greater per day from
September to October (1 cm d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> than during the periods July–August
(0.5 cm d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and August–September (0.6 cm d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p>At the end of the experiment, the above- and below-ground biomass was highly
variable (Fig. 6). The above- and below-ground biomass ranged from 318 to
1484 and from 348 to 1584 g FW m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. The control and
experiment enclosures tended to have less above-ground biomass (630 and 530 g FW m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
than the two external plots (reference: 850 and extra ambient
plot: 870 g FW m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Discussion</title>
      <p>No overwhelming impact was observed on macrophyte abundance, <italic>P. oceanica</italic> leaf
biometrics, biomass, and photosynthesis after 4 months of elevated
<inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. Leaf thickness may change in response to lowered pH but requires
further testing. Many of the leaf biometrics and physiology parameters
varied seasonally with the varying temperature and irradiance. <italic>Posidonia oceanica</italic> abundance
did not substantially change over 8 months as expected for a seagrass
with slow rates of colonization (Marbà and Duarte, 1998). However, under
elevated <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, no other benthic macrophyte or epiphyte proliferated or
decreased to alter the macro-community structure. The similarity in leaf
biometrics, photosynthesis, biomass and growth between enclosures support
the conclusion of limited stimulation for <italic>P. oceanica</italic> under future ocean acidification.
However, due to tradeoffs related to experimental design, there were
limitations to our conclusions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Growth as <italic>P. oceanica</italic> leaf production <bold>(a)</bold> and leaf
plastochrone interval <bold>(b)</bold> during the acidification period. After 4 months of
acidification, biomass (above-ground, <bold>c</bold>; below-ground, <bold>d</bold>) was determined from
replicate cores collected from enclosures and the reference plot. A fourth
nearby ambient area was additionally sampled to better account for spatial
variation.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/2179/2016/bg-13-2179-2016-f06.png"/>

      </fig>

      <p>Thickness and toughness are two structural factors related to mechanical
strain (Harder et al., 2006; Littler and Littler, 1980; Padilla, 1985) and
both traits were altered. Flexibility and strength are needed in
environments with strong wave forces (de los Santos et al., 2013). In
<italic>Cymodocea nodosa, </italic>another Mediterranean seagrass,   leaf cross-sectional area varies with
hydrodynamical forces (de los Santos et al., 2013). Therefore, observed
differences in leaf toughness for plants maintained in the enclosures
support the notion that mechanical abrasion was less than in ambient. This
finding is an artifact of the structure that could not be avoided. In <italic>P. oceanica</italic>,
thickness changes along the leaf axis and leaves are thinner with depth
(Colombo et al., 1983). Given that the experiment was conducted at the same
depth and leaves were measured at their center, it is interesting to note
that leaf thickness was greatest for the shoots collected from the
experimental enclosure and that this effect was driven by measures in
November. An increase in seagrass leaf thickness would be an opposing effect
to those observed for the upright calcified alga, <italic>Acetabularia acetabulum</italic>, which lost skeletal
support under ocean acidification conditions (Newcomb et al., 2015). There
are several possible interpretations of these results. First, leaves at the
lower pH may have increased their carbon content as observed for
below-ground plant structure of the seagrass <italic>Thalassia</italic> <italic>testudinum</italic> under elevated <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
(Campbell and Fourqurean, 2013a). Secondly, lowered pH could result in a
delay of leaf shedding. Plants from the experimental enclosure had a
tendency towards relatively greater leaf length and maintenance of number of
leaves in November. A prolonged leaf life-span could allow plants to
scavenge nutrients from senescing leaves to maintain C <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> N ratio (Gobert et
al., 2002). However, photosynthesis measures were not elevated by the
lowered pH and thus there would be no need for increased nutrients.
Additionally, increased <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and high light increased leaf shedding for
the seagrass <italic>Amphibolis antarctica</italic> (Burnell et al., 2014). The response was linked to
proliferation of filamentous epiphytes, which did not occur in this study.
Alternately, increased leaf thickness could be the result of chance. The
plausible relationship warrants further investigation in field experiments
with prolonged duration and increased replication.</p>
      <p>If indeed leaf thickness increases with ocean acidification, it is unclear
how this would impact herbivore feeding. The main herbivores, the fish,
<italic>Sarpa salpa</italic>, and the sea urchin <italic>Paracentrotus lividus</italic>, feed preferentially on the adult and thicker leaves
(Peirano et al., 2001). These herbivores were prevented from grazing in
enclosures. Arnold et al. (2012) have reported increased rates of fish
grazing on the plant at a proximity of a CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vent, presumably due to the
significant decreases in the production of phenolics. To date, very few
studies have focused on plant-herbivore interactions under elevated
<inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> levels (Asnaghi et al., 2013; Campbell and Fourqurean, 2014; Poore
et al., 2013) and as plant-herbivore interactions were not the focus of this
study, it is not known how this would have impacted the results.</p>
      <p>To our knowledge, this is the first  in situ study to repeatedly and over several
months (6) measure <italic>P. oceanica</italic> fluorescence to find that the second rank leaves showed a
typical seasonal pattern of plant acclimation (Boardman, 1977). Leaves were
more sun-adapted (relatively higher <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>ETR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mo>max⁡</mml:mo></mml:msub></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in periods with
elevated irradiance and more shade-adapted when irradiance and photoperiod
were reduced. The relatively lowered <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="italic">υ</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in May and July
compared to October indicates a down-regulation of PSII activity (Campbell
et al., 2003; Henley, 1993) that corresponds with elevated irradiance in
warmer months. Findings are in agreement with Figueroa (2002) where ETR and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were higher in September than in February. Although there have been
some concerns on the ability of fluorescence techniques to indicate seagrass
carbon stimulation (see Cox et al. (2015); Jiang et al., 2010), <italic>P. oceanica</italic> productivity
as a function of increasing irradiance was in agreement with fluorescence
results.</p>
      <p>The results of the present study add to the growing evidence that the pH
change predicted over the next century may result in limited production
stimulation for <italic>P. oceanica</italic>. The relationship between pH and <italic>P. oceanica</italic> photosynthesis was
established over a wide range of pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> from 9.0 to 7.9 (scale unknown,
Invers et al., 1997), or with more extreme low levels (6.98 pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula>,
Hall-Spencer et al., 2008; 7.5 scale unknown, Invers et al., 2002). Within
the range of 7.9 to 9.0, the slope of the pH-photosynthesis relationship was
significant but, the two variables were moderately related (Invers et al.,
1997). Along CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vents, there was no indication of photosynthetic
stimulation at stations with a pH range of 6.98 to 8.17 but, shoot density
was 30 % greater than nearby areas at the lowest mean pH station
(Hall-Spencer et al., 2008). In a laboratory incubation of <italic>P. oceanica</italic> shoots with
their attached epiphytes, at a similar pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> as this study
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7.7–7.8), there was also a limited stimulation of
productivity (Cox et al., 2015). Similarly, modeled outcomes from laboratory
studies of leaf segments by Invers et al. (1997, 2001) predicted that
elevating <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> by the amount used in this experiment would increase
productivity by only 10 %. This first in situ experiment confirms previous
results obtained on isolated plants or leaf segments in the laboratory and
is interpreted as in agreement with observations at CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vents.</p>
      <p><italic>Posidonia oceanica</italic> has a shoot lifespan estimated up to 50 years (Gobert et al., 2006). In
carbon budgets it is thought that there is asynchrony between fixation
(photosynthesis) and use (respiration or growth), which is balanced by the
storage of carbohydrate reserves (Alcoverro et al., 2001). Because of this
asynchronicity, the photosynthetic benefit of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> may translate into
the following season or year as it did for the seagrass <italic>Zostera marina</italic> (Palacios and
Zimmerman, 2007). In the present study, there was no indication of increased
productivity as gauged by RLCs, PE curves, and measures of leaf chlorophyll.
Therefore, there is no available evidence that carbon availability translated
into increased carbon storage as occurred for <italic>T. testudinum </italic>under elevated <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
(Campbell and Fourqurean, 2013a). Carbohydrates can be translocated to other
ramets (Marbà et al., 2002) which can lessen observed effects but, in
this case, enclosure area captured the 20 cm maximum translocation distance
detected by Marbà and Duarte (1998) and edges severed (designed to
penetrate <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 8 cm) several outside to inside shoot connections.
The most productive period for above-ground growth occurred from April to
August; a pattern consistent with increased growth induced from the greater
availability of both light and nutrients in early spring and increased
storage in July to August (Alcoverro et al., 1995, 1998, 2001; Bay, 1984;
Duarte, 1989; Ott, 1980). Therefore it is possible that if the experiment
were initiated earlier, in a period more conducive for biomass production,
or prolonged to capture any lagging effects the outcome may have been
different.   Only two of six studies support a pulsed seasonal-pH interaction
that could result in long-term gains yet, these were found at pH &lt; 7.7
(see Hall-Spencer et al., (2008); Invers et al., 2002).</p>
      <p>We caution that conclusions should not be applied to other seagrasses and
that outcomes may vary with differences in community composition and
environment. Presumably due to differences in their evolutionary past, some
species are comparatively more responsive to lowered pH (Campbell and
Fourqurean, 2013b; Invers et al., 2001; Koch et al., 2013). <italic>Posidonia oceanica</italic> is less
sensitive to <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and can rely heavily on bicarbonate compared to two
other Pacific seagrass species (Invers et al., 2001). In addition, at
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> seeps in Papua New Guinea, two seagrass species (<italic>Cymodocea serrulata</italic> and <italic>Halophila ovalis</italic>) occur in
mixed stands and while both species had increased productivity along the
lowered pH gradient, it was only <italic>C. serrulata</italic> with dense below-ground biomass that had
increased abundance (Russell et al., 2013); demonstrating that outcomes may
be species specific, related to the plant physiology and structure, and vary
with competition. Biological communities and environmental conditions are
variable both within (e.g. depth) and among meadows (Hemminga and Duarte,
2000). For example, epiphyte coverage and thus level of competition were
reported to be greater along control stations at Ischia, Italy (Martin et
al., 2008) than in our study site, however, differences in methodology
prevent direct coverage comparisons. Nutrient concentration can also alter
the response of seagrass to CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> additions (Burnell et al., 2014;
Martínez-Crego et al., 2014). Clearly our understanding of meadow
dynamics under ocean acidification conditions could benefit from repeated
in situ studies that address issues such as species differences, more prolonged
durations, herbivore–plant interactions, and temporal and spatial effects.</p>
      <p>Performing this experiment  in situ, over several months, is an advancement for
understanding the response of <italic>P. oceanica</italic> to ocean acidification. The eFOCE design has
advantages to other mesocosm systems such as its large size which allows for
measuring processes at the scale of a meadow, its ability to monitor the
environment in real-time, and its ability to maintain pH as an offset.
Though replicated enclosures would have been preferred and are recommended
for future use, their implementation was not feasible at this stage.
However, several steps were taken to eliminate possible erroneous
conclusions including the following: (1) the environment was continuously monitored to
ensure comparisons were valid; (2) repeated measurements were made at the
same location through time both before and after acidification; (3) comparisons
from the pH manipulated enclosure were made to at least two
different spatial locations, and (4) results obtained in laboratory and
natural experiments were compared and are in general agreement. The duration
of this study was longer than any previous pH perturbation carried out on
<italic>P. oceanica</italic> and it was performed in the most natural conditions possible. This study
addresses a need for manipulative experiments done  in situ for longer durations to
make best predictions of future marine ecology (see Gattuso et al., 2014).</p>
      <p>Our findings have implications for the function of future meadows.
Seagrasses through their metabolic activity alter the chemical properties of
the meadow. In daylight, seagrasses draw down the available dissolved
inorganic carbon and at night their respiration has the opposite effect
(Hendriks et al., 2014a). The daily change in pH has been shown to be up to
0.24 pH units and to be related to the density and length of leaves
(Hendriks et al., 2014a). In the current study, the decline in leaf length
and 3 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C difference in temperature likely contributed to the
decline of ambient pH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>T</mml:mtext></mml:msub></mml:math></inline-formula> from 8.10 to 8.01 from May to November. Hendriks
et al. (2014b) has suggested that (1) organisms within the meadow may not be
as vulnerable to ocean acidification because they are adapted to large diel
pH changes; (2) the productivity of <italic>Posidonia</italic> during the day may buffer the impacts of
ocean acidification, particularly for calcifiers by providing a daily window
of maximum calcium carbonate saturation where calcification can be more
efficient, and (3) ocean acidification could stimulate seagrass productivity
and thus increase buffering capacity, which was not supported by the results
of this present study. Considering the two previous proposed hypotheses, the
median diel pH variation for the meadow in this study was <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1
and also appeared to be driven by plant metabolism. However, the median
diel pH range in the experimental enclosure was two to three times larger
than the control (0.09 to 0.29 pH units) and exhibited greater variability;
a finding that would be missed in typical experiments which lower pH and
maintain it at a constant future level(s). The variation in diel pH cannot
solely be explained by O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes. The increased diel pH fluctuation
could largely be the result of the reduced buffering capacity of seawater at
lowered pH (Shaw et al., 2013). The lowered and larger diel pH variation and
lack of productivity stimulation casts doubt on the adaptability of
organisms to future pH change and the ability of a <italic>P. oceanica</italic> meadow to serve as a
future refuge.</p>
      <p>Ocean acidification is not occurring in isolation, warming has been
predicted to result in a complete extinction of <italic>P. oceanica</italic> meadows by the year 2049
(Jordà et al., 2012). The speculation that increased CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
availability would enhance seagrass production and help to alleviate thermal
stress (Zimmerman et al., 2015) was not supported. Jordà et al. (2012)
also draw attention to the continuing decline of <italic>P. oceanica</italic> meadows from 1990 despite
the increase in CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> as a demonstration of the limited capacity of ocean
acidification to buffer seagrass vulnerability to disturbances. It confirms
observations after an explosive episode at a CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vent which resulted in
an extreme lowering of pH (4.7 to 5.4) and elevated temperatures (28–30 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C,
3 to 5 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C above ambient). Along this vent, <italic>P. oceanica</italic>
experienced a decrease in growth that persisted for 3 years (Vizzini et
al., 2010). The extreme nature of the vent activity, confounding biological
differences found at vent sites (e.g. Vizzini et al., 2013), and the
possible change in physiology under combined stressors make it difficult to
predict future meadow ecology. It underscores the need to investigate
stressors concurrently and  in situ. The FOCE systems are tools that can be used to
investigate these types of impacts.</p>
<sec id="Ch1.S4.SS1">
  <title>Summary, caveats, and perspectives</title>
      <p>Any benefit from ocean acidification, over the next century, on <italic>Posidonia</italic> physiology
and growth appears minimal. This conclusion is supported by the similarity
of measures between enclosures and in context of results from other studies.
We have cautioned that the eFOCE study, like all studies, has limitations.
There may be small gains in plant productivity which are masked by an
enclosure effect or difficult to identify without replication or more
prolonged duration. We recommend that future  in situ manipulative efforts use FOCE
systems to control pH as an offset, as we did, and increase replication. The
field of ocean acidification and future seagrass ecology could benefit from
further  in situ experiments that focus on combined stressors, extended experiment
duration, and differences which occur over varying spatial and temporal
scales (eg. within a season promoting above-ground biomass).</p>
</sec>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-13-2179-2016-supplement" xlink:title="pdf">doi:10.5194/bg-13-2179-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p>All authors contributed to the research in this manuscript. Jean-Pierre Gattuso
and Frédéric Gazeau were co-principle investigators that had the idea, oversaw the
project, and were involved in data collection. Paul Mahacek was responsible
for eFOCE system design. Arnaud Le Fur ensured the system functioned with
assistance from Samir Alliouane, T. Erin Cox, Jean-Pierre Gattuso, and Frédéric Gazeau.
T. Erin Cox was responsible for the seagrass protocol and data collection with
assistance from Samir Alliouane and advice given by Iris E. Hendriks who
contributed to fluorescence measures. T. Erin Cox wrote the manuscript with
Jean-Pierre Gattuso and Frédéric Gazeau and all other authors contributed editorial
comments.</p>
  </notes><ack><title>Acknowledgements</title><p>We would like to acknowledge the following people who assisted in the
laboratory, in the field, or with system engineering or maintenance: E. Beck
Acain, J. Acain, J. Delille, L. van der Heijden, M. Maillot, F. Moullec,
S. Schenone, L. Urbini, K. Walzyńska. We also thank J.-J. Pangrazi,
R. Patrix, and E. Tanguy for aide in construction of the enclosures.
Éric Béraud, G. de Liege, D. Luquet, L. Mangialajo, S. Reynaud, and D. Robin
kindly assisted in diving activities. We are grateful to C. Ferrier-Pagès
and her research team for use of their PAM fluorometer. We
also thank B. Kirkwood at Monterey Bay Aquarium Research Institute who
advised in system design. We thank the Service d'Observation Rade de
Villefranche and the Service d'Observation en Milieu Littoral for their kind
permission to use Point B data. We also thank the Service National d'Analyse
des Paramètres Océaniques du CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> for performing the determination of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mtext>T</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at Point B. This work was funded by the “European Free Ocean Carbon
Enrichment” (eFOCE; BNP Paribas Foundation), the European Commission through
the project “Mediterranean Sea Acidification in a changing climate” (MedSeA;
grant agreement 265103) and the MISTRALS-MERMEX (INSU, CNRS) program.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: G. Herndl</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>Alcoverro, T., Duarte, C., and Romero, J.: Annual growth dynamics of
<italic>Posidonia oceanica</italic>: contribution of large-scale versus local factors to seasonality, Mar.
Ecol.-Prog. Ser., 120, 203–210, <ext-link xlink:href="http://dx.doi.org/10.3354/meps120203" ext-link-type="DOI">10.3354/meps120203</ext-link>, 1995.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>Alcoverro, T., Manzanera, M., and Romero, J.: Seasonal and age-dependent
variability of <italic>Posidonia oceanica</italic> (L.) Delile photosynthetic parameters, J. Exp. Mar. Biol.
Ecol., 230, 1–13, 1998.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>Alcoverro, T., Manzanera, M., and Romero, J.: Annual metabolic carbon balance
of the seagrass <italic>Posidonia oceanica</italic>: the importance of carbohydrate reserves, Mar. Ecol.-Prog.
Ser., 211, 105–116, 2001.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>Apostolaki, E. T., Holmer, M., Marba, N., and Karakassis, I.: Metabolic
imbalance in coastal vegetated (<italic>Posidonia oceanica</italic>) and unvegetated benthic ecosystems,
Ecosystems, 13, 459–471, 2010.</mixed-citation></ref>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>Arnold, T., Mealey, C., Leahey, H., Miller, A. W., Hall-Spencer, J. M.,
Milazzo, M., and Maers, K.: Ocean acidification and the loss of phenolic
substances in marine plants, PLoS ONE, 7, e35107,
<ext-link xlink:href="http://dx.doi.org/10.1371/journal.pone.0035107" ext-link-type="DOI">10.1371/journal.pone.0035107</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>Asnaghi, V., Chiantore, M., Mangialajo, L., Gazeau, F., Francour, P.,
Alliouane, S., and Gattuso, J.-P.: Cascading effects of ocean acidification
in a rocky subtidal community, PLoS ONE, 8, e61978,
<ext-link xlink:href="http://dx.doi.org/10.1371/journal.pone.0061978" ext-link-type="DOI">10.1371/journal.pone.0061978</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>Bay, D.: A field stuy of the growth dynamics and productivity of <italic>Posidonia oceanica</italic> (L.)
Delile in Calvi Bay, Corsica, Aquat. Bot., 20, 43–64,
<ext-link xlink:href="http://dx.doi.org/10.1016/0304-3770(84)90026-3" ext-link-type="DOI">10.1016/0304-3770(84)90026-3</ext-link>, 1984.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>
Beer, S. and Björk, M.: Measuring rates of photosynthesis of two
tropical seagrasses by pulse amplitude modulated (PAM) fluorometry, Aquat.
Bot., 66, 69–76, 2000.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>Boardman, N. K.: Comparative photosynthesis of sun and shade plants, Annu.
Rev. Plant Physio., 28, 355–377,
<ext-link xlink:href="http://dx.doi.org/10.1146/annurev.pp.28.060177.002035" ext-link-type="DOI">10.1146/annurev.pp.28.060177.002035</ext-link>, 1977.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>
Borowitzka, M. A., Lavery, P. S., and van Keulen, M.: Epiphytes of
seagrasses, in Seagrasses: Biology, Ecology and Conservation, edited by:
Larkum, A. W. D.,  Orth, R. J., and  Duarte, C. M.,   Springer,
Dordrecht, the Netherlands,  441–461, 2006.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>Burnell, O., Russell, B., Irving, A., and Connell, S.: Seagrass response to
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> contingent on epiphytic algae: indirect effects can overwhelm
direct effects, Oecologia, 176, 871–882, 2014.</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>Campbell, J. E. and Fourqurean, J. W.: Novel methodology for <italic>in situ</italic> carbon dioxide
enrichment of benthic ecosystems, Limnol. Oceanogr.-Meth., 9, 97–109,
<ext-link xlink:href="http://dx.doi.org/10.4319/lom.2011.9.97" ext-link-type="DOI">10.4319/lom.2011.9.97</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>Campbell, J. E. and Fourqurean, J. W.: Effects of <italic>in situ</italic> CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> enrichment on
the structural and chemical characteristics of the seagrass <italic>Thalassia testudinum</italic>, Mar. Biol.,
160, 1465–1475, 2013a.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>
Campbell, J. E. and Fourqurean, J. W.: Mechanisms of bicarbonate use
influence the photosynthetic carbon dioxide sensitivity of tropical
seagrasses, Limnol. Oceanogr., 58, 839–848, 2013b.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>Campbell, J. E. and Fourqurean, J. W.: Ocean acidification outweighs
nutrient effects in structuring seagrass epiphyte communities, J. Ecol.,
102, 730–737, <ext-link xlink:href="http://dx.doi.org/10.1111/1365-2745.12233" ext-link-type="DOI">10.1111/1365-2745.12233</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>Campbell, S., Miller, C., Steven, A., and Stephens, A.: Photosynthetic
responses of two temperate seagrasses across a water quality gradient using
chlorophyll fluorescence, J. Exp. Mar. Biol. Ecol., 291, 57–78,
<ext-link xlink:href="http://dx.doi.org/10.1016/S0022-0981(03)00090-X" ext-link-type="DOI">10.1016/S0022-0981(03)00090-X</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bib17"><label>17</label><mixed-citation>Cebrián, J., Enríquez, S., Fortes, M. D., Agawin, N., Vermaat, J.
E., and Duarte, C. M.: Epiphyte accrual on <italic>Posidonia oceanica</italic> (L.) Delile leaves: implications
for light absorption, Bot. Mar., 42, 123–128, <ext-link xlink:href="http://dx.doi.org/10.1515/BOT.1999.015" ext-link-type="DOI">10.1515/BOT.1999.015</ext-link>,
1999.</mixed-citation></ref>
      <ref id="bib1.bib18"><label>18</label><mixed-citation>
Cherrett, J. M.: A simple penetrometer for measuring leaf toughness in
insect feeding studies, J. Econ. Entomol., 66, 1736–1738, 1968.</mixed-citation></ref>
      <ref id="bib1.bib19"><label>19</label><mixed-citation>
Ciais, P., Sabine, C., Bala, G., Bopp, L., Brovkin, V., Canadell, J.,
Chhabra, A., DeFries, R., Galloway, J., Heimann, M., Jones, C., Le
Quéré, C., Myneni, R. B., Piao, S., and Thornton, P.: Carbon and
other biogeochemical cycles, Cambridge University Press, Cambridge, United
Kingdom and New York, NY, USA, 2013.</mixed-citation></ref>
      <ref id="bib1.bib20"><label>20</label><mixed-citation>Colombo, P. M., Rascio, N., and Cinelli, F.: <italic>Posidonia oceanica</italic> (L.) Delile: a structural study
of the photosynthetic apparatus, Mar. Ecol., 4, 133–145,
<ext-link xlink:href="http://dx.doi.org/10.1111/j.1439-0485.1983.tb00292.x" ext-link-type="DOI">10.1111/j.1439-0485.1983.tb00292.x</ext-link>, 1983.</mixed-citation></ref>
      <ref id="bib1.bib21"><label>21</label><mixed-citation>Cox, T. E. and Smith, C. M.: Photosynthetic rapid light curves for <italic>Padina sanctae-crucis</italic> vary
with irradiance, aerial exposure, and tides in Hawaii's micro-intertidal
zones, Mar. Biol., 162, 1061–1076, <ext-link xlink:href="http://dx.doi.org/10.1007/s00227-015-2649-1" ext-link-type="DOI">10.1007/s00227-015-2649-1</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib22"><label>22</label><mixed-citation>Cox, T. E., Schenone, S., Delille, J., Díaz-Castañeda, V.,
Alliouane, S., Gattuso, J. P., and Gazeau, F.: Effects of ocean acidification
on <italic>Posidonia oceanica</italic> epiphytic community and shoot productivity, J. Ecol., 103, 1594–1609,
<ext-link xlink:href="http://dx.doi.org/10.1111/1365-2745.12477" ext-link-type="DOI">10.1111/1365-2745.12477</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib23"><label>23</label><mixed-citation>Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best practices
for ocean CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> measurements, PICES Special Publication 3, British
Columbia, Canada, 2007.</mixed-citation></ref>
      <ref id="bib1.bib24"><label>24</label><mixed-citation>Duarte, C. M.: Temporal biomass variability and production/biomass
relationships of seagrass communities, Mar. Ecol.-Prog. Ser., 51, 269–276,
<ext-link xlink:href="http://dx.doi.org/10.3354/meps051269" ext-link-type="DOI">10.3354/meps051269</ext-link>, 1989.</mixed-citation></ref>
      <ref id="bib1.bib25"><label>25</label><mixed-citation>
Duarte, C. M. and Chiscano, C. L.: Seagrass biomass and production: a
reassessment, Aquat. Bot., 65, 159–174, 1999.</mixed-citation></ref>
      <ref id="bib1.bib26"><label>26</label><mixed-citation>Duarte, C. M., Marba, N., Gacia, E., Fourqurean, J. W., Beggins, J., Barron,
C., and Apostolaki, E. T.: Seagrass community metabolism: Assessing the
carbon sink capacity of seagrass meadows., Global Biogeochem. Cy., 24,
1–9, <ext-link xlink:href="http://dx.doi.org/10.1029/2010GB003793" ext-link-type="DOI">10.1029/2010GB003793</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib27"><label>27</label><mixed-citation>Figueroa, F. L., Jiménez, C., Viñegla, B., Pérez-Rodríguez,
E., Aguilera, J., Flores-Moya, A., Altamirano, M., Lebert, M., and Häder,
D. P.: Effects of solar UV radiation on photosynthesis of the marine
angiosperm <italic>Posidonia oceanica</italic> from southern Spain, Mar. Ecol.-Prog. Ser., 230, 59–70, 2002.</mixed-citation></ref>
      <ref id="bib1.bib28"><label>28</label><mixed-citation>Gattuso, J.-P., Kirkwood, W., Barry, J. P., Cox, E., Gazeau, F., Hansson, L.,
Hendriks, I., Kline, D.I., Mahacek, P., Martin, S., McElhany, P., Peltzer, E.
T., Reeve, J., Roberts, D., Saderne, V., Tait, K., Widdicombe, S., and
Brewer, P. G.: Free-ocean CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> enrichment (FOCE) systems: present status
and future developments, Biogeosciences, 11, 4057–4075,
<ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-4057-2014" ext-link-type="DOI">10.5194/bg-11-4057-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib29"><label>29</label><mixed-citation>Gattuso, J. P., Epitalon, J. M., and Lavigne, H.: Seacarb: seawater carbonate
chemistry with R., available at:
<uri>http://CRAN.R-project.org/package=seacarb</uri> (last access: (10 April 2016), 2015.</mixed-citation></ref>
      <ref id="bib1.bib30"><label>30</label><mixed-citation>
Genty, B., Briantais, J.-M., and Baker, N. R.: The relationship between the
quantum yield of photosynthetic electron transport and photochemical
quenching of chlorophyll fluorescence, Biochem. Biophys. Acta, 990, 87–92,
1989.</mixed-citation></ref>
      <ref id="bib1.bib31"><label>31</label><mixed-citation>Gobert, S., Laumont, N., and Bouquegneau, J.-M.: <italic>Posidonia oceanica</italic>
meadow: a low nutrient high chlorophyll (LNHC) system?, BMC Ecol., 2, 9–21,
<ext-link xlink:href="http://dx.doi.org/10.1186/1472-6785-2-9" ext-link-type="DOI">10.1186/1472-6785-2-9</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bib32"><label>32</label><mixed-citation>Gobert, S., Cambridge, M. L., Velimirov, B., Pergent, G., Lepoint, G.,
Bouquegneau, J.-M., Duaby, P., Pergent-Martini, C., and Walker, D. I.:
Biology of <italic>Posidonia</italic>, in Seagrasses: biology, ecology and
conservation, edited by: Larkum, A. W. D., Orth, R. J., and Duarte, C. M.,
Springer, Dordrecht, the Netherlands, 387–408, 2006.</mixed-citation></ref>
      <ref id="bib1.bib33"><label>33</label><mixed-citation>
Hall-Spencer, J. M., Rodolfo-Metalpa, R., Martin, S., Ransome, E., Fine, M.,
Turner, S. M., Rowley, S. J., Tedesco, D., and Buia, M. C.: Volcanic carbon
dioxide vents show ecosystem effects of ocean acidification, Nature, 454,
96–99, 2008.</mixed-citation></ref>
      <ref id="bib1.bib34"><label>34</label><mixed-citation>Harder, D. L., Hurd, C. L., and Speck, T.: Comparison of mechanical
properties of four large, wave-exposed seaweeds, Am. J. Bot., 93, 1426–1432,
<ext-link xlink:href="http://dx.doi.org/10.3732/ajb.93.10.1426" ext-link-type="DOI">10.3732/ajb.93.10.1426</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bib35"><label>35</label><mixed-citation>
Hemminga, M. A. and Duarte, C. M.: Seagrass ecology, University of Cambridge,
Cambridge University Press, United Kingdom, ISBN 0-521-66184-6, 2000.</mixed-citation></ref>
      <ref id="bib1.bib36"><label>36</label><mixed-citation>Hendriks, I. E., Olsen, Y. S., Ramajo, L., Basso, L., Steckbauer, A., Moore,
T. S., Howard, J., and Duarte, C. M.: Photosynthetic activity buffers ocean
acidification in seagrass meadows, Biogeosciences, 11, 333–346,
<ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-333-2014" ext-link-type="DOI">10.5194/bg-11-333-2014</ext-link>, 2014a.</mixed-citation></ref>
      <ref id="bib1.bib37"><label>37</label><mixed-citation>Hendriks, I. E., Duarte, C. M., Olsen, Y. S., Steckbauer, A., Ramajo, L.,
Moore, T. S., Trotter, J. A., and McCulloch, M.: Biological mechanisms
supporting adaptation to ocean acidification in coastal ecosystems, Estuar.
Coast. Shelf S., 152, 1–8, <ext-link xlink:href="http://dx.doi.org/10.1016/j.ecss.2014.07.019" ext-link-type="DOI">10.1016/j.ecss.2014.07.019</ext-link>, 2014b.</mixed-citation></ref>
      <ref id="bib1.bib38"><label>38</label><mixed-citation>Henley, W. J.: Measurement and interpretation of photosynthetic
light-response curves in algae in the context of photoinhibition and diel
changes, J. Phycol., 29, 729–739, <ext-link xlink:href="http://dx.doi.org/10.1111/j.0022-3646.1993.00729.x" ext-link-type="DOI">10.1111/j.0022-3646.1993.00729.x</ext-link>,
1993.</mixed-citation></ref>
      <ref id="bib1.bib39"><label>39</label><mixed-citation>Invers, O., Romero, J., Perez, M., and Pérez, M.: Effects of pH on
seagrass photosynthesis: a laboratory and field assessment, Aquat. Bot., 59,
185–194, <ext-link xlink:href="http://dx.doi.org/10.1016/S0304-3770(97)00072-7" ext-link-type="DOI">10.1016/S0304-3770(97)00072-7</ext-link>, 1997.</mixed-citation></ref>
      <ref id="bib1.bib40"><label>40</label><mixed-citation>
Invers, O., Zimmerman, R., Alberte, R. S., Perez, M., and Romero, J.:
Inorganic carbon sources for seagrass photosynthesis: an experimental
evaluation of bicarbonate use in species inhabiting temperate waters, J. Exp.
Mar. Biol. Ecol., 265, 203–217, 2001.</mixed-citation></ref>
      <ref id="bib1.bib41"><label>41</label><mixed-citation>Invers, O., Tomas, F., Perez, M., Romero, J., Tomàs, F., Pérez, M.,
and Romero, J.: Potential effect of increased global CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> availability on
the depth distribution of the seagrass <italic>Posidonia oceanica</italic> (L.)
Delile: a tentative assessment using a carbon balance model, B. Mar. Sci.,
71, 1191–1198, 2002.</mixed-citation></ref>
      <ref id="bib1.bib42"><label>42</label><mixed-citation>
Jassby, A. D. and Platt, T.: Mathematical formulation of the relationship
between photosynthesis and light for phytoplankton, Limnol. Oceanogr., 21,
540–547, 1976.</mixed-citation></ref>
      <ref id="bib1.bib43"><label>43</label><mixed-citation>
Jeffrey, S. and Humphrey, G.: New spectrophotometric equations for the
determination of chlorophylls a, b, c1 and c2 in higher plants, algae and
natural phytoplankton, Biochem. Physiol. Pfl., 167, 191–194,
1975.</mixed-citation></ref>
      <ref id="bib1.bib44"><label>44</label><mixed-citation>Jiang, Z. J., Huang, X.-P., and Zhang, J.-P.: Effects of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> enrichment
on photosynthesis, growth, and biochemical composition of seagrass
<italic>Thalassia hemprichii</italic> (Ehrenb.) Aschers, J. Integr. Plant Biol., 52,
904–913, 2010.</mixed-citation></ref>
      <ref id="bib1.bib45"><label>45</label><mixed-citation>Jordà, G., Marbà, N., and Duarte, C. M.: Mediterranean seagrass
vulnerable to regional climate warming, Nature Climate Change, 2, 821–824,
<ext-link xlink:href="http://dx.doi.org/10.1038/nclimate1533" ext-link-type="DOI">10.1038/nclimate1533</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib46"><label>46</label><mixed-citation>Kerrison, P., Hall-Spencer, J. M., Suggett, D. J., Hepburn, L. J., and
Steinke, M.: Assessment of pH variability at a coastal CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vent for
ocean acidification studies, Estuar. Coast. Shelf Sc., 94, 129–137, 2011.</mixed-citation></ref>
      <ref id="bib1.bib47"><label>47</label><mixed-citation>Koch, M., Bowes, G., Ross, C., and Zhang, X. H.: Climate change and ocean
acidification effects on seagrasses and marine macroalgae, Glob. Change
Biol., 19, 103–132, <ext-link xlink:href="http://dx.doi.org/10.1111/j.1365-2486.2012.02791.x" ext-link-type="DOI">10.1111/j.1365-2486.2012.02791.x</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib48"><label>48</label><mixed-citation>
Littler, M. M. and Littler, D. S.: The evolution of thallus form and
survival strategies in benthic marine macroalgae: field and laboratory tests
of a functional form model, Am. Nat., 116, 25–44, 1980.</mixed-citation></ref>
      <ref id="bib1.bib49"><label>49</label><mixed-citation>
Liu, X., Patasavas, M. C., and Byrne, R. H.: Purification and
characterization of meta-Cresol Purple for spectrophotometric seawater pH
measurements, Environ. Sci. Technol., 45, 4862–4868, 2011.</mixed-citation></ref>
      <ref id="bib1.bib50"><label>50</label><mixed-citation>
Marbà, N. and Duarte, C. M.: Rhizome elongation and seagrass clonal
growth, Mar. Ecol.-Prog. Ser., 174, 269–280, 1998.</mixed-citation></ref>
      <ref id="bib1.bib51"><label>51</label><mixed-citation>
Marbà, N., Hemminga, M. A., Mateo, M. A., Duarte, C. M., Mass, Y. E. M.,
Terrados, J., and Gacia, E.: Carbon and nitrogen translocation between
seagrass ramets, Mar. Ecol.-Prog. Ser., 226, 287–300, 2002.</mixed-citation></ref>
      <ref id="bib1.bib52"><label>52</label><mixed-citation>Martin, S., Rodolfo-Metalpa, R., Ransome, E., Rowley, S., Buia, M.-C. C.,
Gattuso, J.-P., and Hall-Spencer, J.: Effects of naturally acidified seawater
on seagrass calcareous epibionts, Biol. Lett., 4, 689–692,
<ext-link xlink:href="http://dx.doi.org/10.1098/rsbl.2008.0412" ext-link-type="DOI">10.1098/rsbl.2008.0412</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bib53"><label>53</label><mixed-citation>Martínez-Crego, B., Olivé, I., and Santos, R.: CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and
nutrient-driven changes across multiple levels of organization in Zostera
noltii ecosystems, Biogeosciences, 11, 7237–7249,
<ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-7237-2014" ext-link-type="DOI">10.5194/bg-11-7237-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib54"><label>54</label><mixed-citation>Newcomb, L. A., Milazzo, M., Hall-Spencer, J. M., and Carrington, E.: Ocean
acidification bends the mermaid's wineglass, Biol. Lett., 11, 20141075,
<ext-link xlink:href="http://dx.doi.org/10.1098/rsbl.2014.1075" ext-link-type="DOI">10.1098/rsbl.2014.1075</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib55"><label>55</label><mixed-citation>Ott, J. A.: Growth and production in <italic>Posidonia oceanica</italic> (L.) Delile,
Mar. Ecol., 1, 47–64, <ext-link xlink:href="http://dx.doi.org/10.1111/j.1439-0485.1980.tb00221.x" ext-link-type="DOI">10.1111/j.1439-0485.1980.tb00221.x</ext-link>, 1980.</mixed-citation></ref>
      <ref id="bib1.bib56"><label>56</label><mixed-citation>Ow, Y. X., Collier, C. J., and Uthicke, S.: Response of three tropical
seagrass species to CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> enrichment, Mar. Biol., 162, 1005–1017,
<ext-link xlink:href="http://dx.doi.org/10.1007/s00227-015-2644-6" ext-link-type="DOI">10.1007/s00227-015-2644-6</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib57"><label>57</label><mixed-citation>Padilla, D. K.: Structural resistance of algae to herbivores: a biomechanical
approach, Mar. Biol., 90, 103–109, <ext-link xlink:href="http://dx.doi.org/10.1007/BF00428220" ext-link-type="DOI">10.1007/BF00428220</ext-link>, 1985.</mixed-citation></ref>
      <ref id="bib1.bib58"><label>58</label><mixed-citation>Palacios, S. L. and Zimmerman, R.: Response of eelgrass <italic>Zostera marina</italic> to CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
enrichment: possible impacts of climate change and potential for remediation
of coastal habitats, Mar. Ecol.-Prog. Ser., 344, 1–13, 2007.</mixed-citation></ref>
      <ref id="bib1.bib59"><label>59</label><mixed-citation>Pasqualini, V., Pergent-Martini, C., Clabaut, P., and Pergent, G.: Mapping of
<italic>Posidonia oceanica</italic> using aerial photographs and side scan sonar:
application off the island of Corsica (France), Estuar. Coast. Shelf S., 47,
359–367, 1998.</mixed-citation></ref>
      <ref id="bib1.bib60"><label>60</label><mixed-citation>Peirano, A., Niccolai, I., Mauro, R., and Bianchi, C. N.: Seasonal grazing
and food preference of herbivores in a <italic>Posidonia oceanica</italic> meadow,
Sci. Mar., 65, 367–374, 2001.</mixed-citation></ref>
      <ref id="bib1.bib61"><label>61</label><mixed-citation>Pergent-Martini, C., Leoni, V., Pasqualini, V., Ardizzone, G. D., Balestri,
E., Bedini, R., Belluscio, A., Belsher, T., Borg, J., Boudouresque, C. F.,
Boumaza, S., Bouquegneau, J. M., Buia, M. C., Calvo, S., Cebrian, J.,
Charbonnel, E., Cinelli, F., Cossu, A., Maida, D. I., Dural, B., Francour,
P., Gobert, S., Lepoint, G., Meinesz, A., Molenaar, H., Mansour, H.,
Panayotidis, M. P., Peirano, A., Pergent, G., Piazzi, L., Pirrotta, M.,
Relini, G., Romero, J., Sanchez-Lizaso, J. L., Semroud, R., Shembri, P.,
Shili, A., Tomasello, A. and Velimirov, B.: Descriptors of <italic>Posidonia oceanica meadows</italic>: Use and
application, Ecol. Indic., 5, 213–230, 2005.</mixed-citation></ref>
      <ref id="bib1.bib62"><label>62</label><mixed-citation>
Platt, T., Gallegos, C., and Harrison, W.: Photoinhibition of photosynthesis
in natural assemblages of marine phytoplankton, J. Mar. Res., 38, 687–701,
1980.</mixed-citation></ref>
      <ref id="bib1.bib63"><label>63</label><mixed-citation>Poore, A. G. B., Graba-Landry, A., Favret, M., Sheppard Brennand, H., Byrne,
M., and Dworjanyn, S. A.: Direct and indirect effects of ocean acidification
and warming on a marine plant–herbivore interaction, Oecologia, 173,
1113–1124, <ext-link xlink:href="http://dx.doi.org/10.1007/s00442-013-2683-y" ext-link-type="DOI">10.1007/s00442-013-2683-y</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib64"><label>64</label><mixed-citation>Russell, B. D., Connell, S. D., Uthicke, S., Muehllehner, N., Fabricius, K.
E., and Hall-Spencer, J. M.: Future seagrass beds: Can increased productivity
lead to increased carbon storage?, Mar. Pollut. Bull., 73, 463–469,
<ext-link xlink:href="http://dx.doi.org/10.1016/j.marpolbul.2013.01.031" ext-link-type="DOI">10.1016/j.marpolbul.2013.01.031</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib65"><label>65</label><mixed-citation>
Sand-Jensen, K., Revsbech, N. P., and Jorgensen, B. B.: Microprofiles of
oxygen in epiphyte communities on submerged macrophytes, Mar. Biol., 89,
55–62, 1985.</mixed-citation></ref>
      <ref id="bib1.bib66"><label>66</label><mixed-citation>de los Santos, C. B., Brun, F. G., Vergara, J. J., and Perez-Llorens, J. L.:
New aspect in seagrass acclimation: leaf mechanical properties vary spatially
and seasonally in the temperate species Cymodocea nodosa Ucria (Ascherson),
Mar. Biol., 160, 1083–1093, <ext-link xlink:href="http://dx.doi.org/10.1007/s00227-012-2159-3" ext-link-type="DOI">10.1007/s00227-012-2159-3</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib67"><label>67</label><mixed-citation>Shaw, E. C., McNeil, B. I., Tilbrook, B., Matear, R., and Bates, M. L.:
Anthropogenic changes to seawater buffer capacity combined with natural reef
metabolism induce extreme future coral reef CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> conditions, Glob. Change
Biol., 19, 1632–1641, <ext-link xlink:href="http://dx.doi.org/10.1111/gcb.12154" ext-link-type="DOI">10.1111/gcb.12154</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib68"><label>68</label><mixed-citation>
Short, F. T. and Duarte, C. M.: Methods for the measurement of seagrass
growth and production, in Global seagrass research method, edited by: Short,
F. T. and Coles, R. G., Elsevier, Amsterdam, the Netherands, 155–180, 2001.</mixed-citation></ref>
      <ref id="bib1.bib69"><label>69</label><mixed-citation>Vassallo, P., Paoli, C., Rovere, A., Montefalcone, M., Morri, C., and
Bianchi, C. N.: The value of the seagrass <italic>Posidonia oceanica</italic>: A
natural capital assessment, Mar. Pollut. Bull., 75, 157–167, 2013.</mixed-citation></ref>
      <ref id="bib1.bib70"><label>70</label><mixed-citation>Vizzini, S., Tomasello, A., Di Maida, G., Pirrotta, M., Mazzola, A., and
Calvo, S.: Effect of explosive shallow hydrothermal vents on <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C
and growth performance in the seagrass <italic>Posidonia oceanica</italic>, J. Ecol.,
98, 1284–1291, <ext-link xlink:href="http://dx.doi.org/10.1111/j.1365-2745.2010.01730.x" ext-link-type="DOI">10.1111/j.1365-2745.2010.01730.x</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib71"><label>71</label><mixed-citation>Vizzini, S., Di Leonardo, R., Costa, V., Tramati, C. D., Luzzu, F., and
Mazzola, A.: Trace element bias in the use of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vents as analogues for
low pH environments: implications for contamination levels in acidified
oceans, Estuar. Coast. Shelf S., 134, 19–30, <ext-link xlink:href="http://dx.doi.org/10.1016/j.ecss.2013.09.015" ext-link-type="DOI">10.1016/j.ecss.2013.09.015</ext-link>,
2013.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib72"><label>72</label><mixed-citation>
Waycott, M., Duarte, C. M., Carruthers, T. J. B., Orth, R. J., Dennison, W.
C., Olyarnik, S., Calladine, A., Fourqurean, J. W., Heck, K. L., Hughes, A.
R., Kendrick, G. A., Kenworthy, W. J., Short, F. T., and Williams, S. L.:
Accelerating loss of seagrasses across the globe threatens coastal
ecosystems., P. Natl. Acad. Sci. USA, 106, 12377–12381, 2009.</mixed-citation></ref>
      <ref id="bib1.bib73"><label>73</label><mixed-citation>Zimmerman, R. C. A., Kohrs, D. G. A., Steller, D. L. B., and Alberte, R. S.
A.: Impacts of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> enrichment on productivity and light requirements of
eelgrass, Plant Physiol., 115, 599–607, 1997.</mixed-citation></ref>
      <ref id="bib1.bib74"><label>74</label><mixed-citation>Zimmerman, R. C., Hill, V. J., and Gallegos, C. L.: Predicting effects of
ocean warming, acidification, and water quality on Chesapeake region
eelgrass: Predicting eelgrass response to climate change, Limnol. Oceanogr.,
60, 1781–1804, <ext-link xlink:href="http://dx.doi.org/10.1002/lno.10139" ext-link-type="DOI">10.1002/lno.10139</ext-link>, 2015.</mixed-citation></ref>

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    </app></app-group></back>
    <!--<article-title-html>Effects of in situ CO<sub>2</sub> enrichment on structural characteristics,
photosynthesis, and growth of the Mediterranean seagrass <i>Posidonia oceanica</i></article-title-html>
<abstract-html><p class="p">Seagrass is expected to benefit from increased carbon availability under
future ocean acidification. This hypothesis has been little tested by in situ
manipulation. To test for ocean acidification effects on seagrass meadows
under controlled CO<sub>2</sub>/pH conditions, we used a Free Ocean Carbon Dioxide
Enrichment (FOCE) system which allows for the manipulation of pH as
continuous offset from ambient. It was deployed in a <i>Posidonia</i> oceanica meadow
at 11 m depth in the Northwestern Mediterranean Sea. It consisted of two benthic
enclosures, an experimental and a control unit both 1.7 m<sup>3</sup>, and an
additional reference plot in the ambient environment (2 m<sup>2</sup>) to account for
structural artifacts. The meadow was monitored from April to November 2014.
The pH of the experimental enclosure was lowered by 0.26 pH units for the
second half of the 8-month study. The greatest magnitude of change in
<i>P. oceanica</i> leaf biometrics, photosynthesis, and leaf growth accompanied seasonal
changes recorded in the environment and values were similar between the two
enclosures. Leaf thickness may change in response to lower pH but this
requires further testing. Results are congruent with other short-term and
natural studies that have investigated the response of <i>P. oceanica</i> over a wide range of
pH. They suggest any benefit from ocean acidification, over the next century
(at a pH of  ∼  7.7 on the total scale), on <i>Posidonia</i> physiology and growth may be
minimal and difficult to detect without increased replication or longer
experimental duration. The limited stimulation, which did not surpass any
enclosure or seasonal effect, casts doubts on speculations that elevated
CO<sub>2</sub> would confer resistance to thermal stress and increase the buffering
capacity of meadows.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Alcoverro, T., Duarte, C., and Romero, J.: Annual growth dynamics of
<i>Posidonia oceanica</i>: contribution of large-scale versus local factors to seasonality, Mar.
Ecol.-Prog. Ser., 120, 203–210, <a href="http://dx.doi.org/10.3354/meps120203" target="_blank">doi:10.3354/meps120203</a>, 1995.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Alcoverro, T., Manzanera, M., and Romero, J.: Seasonal and age-dependent
variability of <i>Posidonia oceanica</i> (L.) Delile photosynthetic parameters, J. Exp. Mar. Biol.
Ecol., 230, 1–13, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Alcoverro, T., Manzanera, M., and Romero, J.: Annual metabolic carbon balance
of the seagrass <i>Posidonia oceanica</i>: the importance of carbohydrate reserves, Mar. Ecol.-Prog.
Ser., 211, 105–116, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Apostolaki, E. T., Holmer, M., Marba, N., and Karakassis, I.: Metabolic
imbalance in coastal vegetated (<i>Posidonia oceanica</i>) and unvegetated benthic ecosystems,
Ecosystems, 13, 459–471, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Arnold, T., Mealey, C., Leahey, H., Miller, A. W., Hall-Spencer, J. M.,
Milazzo, M., and Maers, K.: Ocean acidification and the loss of phenolic
substances in marine plants, PLoS ONE, 7, e35107,
<a href="http://dx.doi.org/10.1371/journal.pone.0035107" target="_blank">doi:10.1371/journal.pone.0035107</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
Asnaghi, V., Chiantore, M., Mangialajo, L., Gazeau, F., Francour, P.,
Alliouane, S., and Gattuso, J.-P.: Cascading effects of ocean acidification
in a rocky subtidal community, PLoS ONE, 8, e61978,
<a href="http://dx.doi.org/10.1371/journal.pone.0061978" target="_blank">doi:10.1371/journal.pone.0061978</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
Bay, D.: A field stuy of the growth dynamics and productivity of <i>Posidonia oceanica</i> (L.)
Delile in Calvi Bay, Corsica, Aquat. Bot., 20, 43–64,
<a href="http://dx.doi.org/10.1016/0304-3770(84)90026-3" target="_blank">doi:10.1016/0304-3770(84)90026-3</a>, 1984.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
Beer, S. and Björk, M.: Measuring rates of photosynthesis of two
tropical seagrasses by pulse amplitude modulated (PAM) fluorometry, Aquat.
Bot., 66, 69–76, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Boardman, N. K.: Comparative photosynthesis of sun and shade plants, Annu.
Rev. Plant Physio., 28, 355–377,
<a href="http://dx.doi.org/10.1146/annurev.pp.28.060177.002035" target="_blank">doi:10.1146/annurev.pp.28.060177.002035</a>, 1977.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Borowitzka, M. A., Lavery, P. S., and van Keulen, M.: Epiphytes of
seagrasses, in Seagrasses: Biology, Ecology and Conservation, edited by:
Larkum, A. W. D.,  Orth, R. J., and  Duarte, C. M.,   Springer,
Dordrecht, the Netherlands,  441–461, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Burnell, O., Russell, B., Irving, A., and Connell, S.: Seagrass response to
CO<sub>2</sub> contingent on epiphytic algae: indirect effects can overwhelm
direct effects, Oecologia, 176, 871–882, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Campbell, J. E. and Fourqurean, J. W.: Novel methodology for <i>in situ</i> carbon dioxide
enrichment of benthic ecosystems, Limnol. Oceanogr.-Meth., 9, 97–109,
<a href="http://dx.doi.org/10.4319/lom.2011.9.97" target="_blank">doi:10.4319/lom.2011.9.97</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Campbell, J. E. and Fourqurean, J. W.: Effects of <i>in situ</i> CO<sub>2</sub> enrichment on
the structural and chemical characteristics of the seagrass <i>Thalassia testudinum</i>, Mar. Biol.,
160, 1465–1475, 2013a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Campbell, J. E. and Fourqurean, J. W.: Mechanisms of bicarbonate use
influence the photosynthetic carbon dioxide sensitivity of tropical
seagrasses, Limnol. Oceanogr., 58, 839–848, 2013b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
Campbell, J. E. and Fourqurean, J. W.: Ocean acidification outweighs
nutrient effects in structuring seagrass epiphyte communities, J. Ecol.,
102, 730–737, <a href="http://dx.doi.org/10.1111/1365-2745.12233" target="_blank">doi:10.1111/1365-2745.12233</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Campbell, S., Miller, C., Steven, A., and Stephens, A.: Photosynthetic
responses of two temperate seagrasses across a water quality gradient using
chlorophyll fluorescence, J. Exp. Mar. Biol. Ecol., 291, 57–78,
<a href="http://dx.doi.org/10.1016/S0022-0981(03)00090-X" target="_blank">doi:10.1016/S0022-0981(03)00090-X</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>17</label><mixed-citation>
Cebrián, J., Enríquez, S., Fortes, M. D., Agawin, N., Vermaat, J.
E., and Duarte, C. M.: Epiphyte accrual on <i>Posidonia oceanica</i> (L.) Delile leaves: implications
for light absorption, Bot. Mar., 42, 123–128, <a href="http://dx.doi.org/10.1515/BOT.1999.015" target="_blank">doi:10.1515/BOT.1999.015</a>,
1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>18</label><mixed-citation>
Cherrett, J. M.: A simple penetrometer for measuring leaf toughness in
insect feeding studies, J. Econ. Entomol., 66, 1736–1738, 1968.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>19</label><mixed-citation>
Ciais, P., Sabine, C., Bala, G., Bopp, L., Brovkin, V., Canadell, J.,
Chhabra, A., DeFries, R., Galloway, J., Heimann, M., Jones, C., Le
Quéré, C., Myneni, R. B., Piao, S., and Thornton, P.: Carbon and
other biogeochemical cycles, Cambridge University Press, Cambridge, United
Kingdom and New York, NY, USA, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>20</label><mixed-citation>
Colombo, P. M., Rascio, N., and Cinelli, F.: <i>Posidonia oceanica</i> (L.) Delile: a structural study
of the photosynthetic apparatus, Mar. Ecol., 4, 133–145,
<a href="http://dx.doi.org/10.1111/j.1439-0485.1983.tb00292.x" target="_blank">doi:10.1111/j.1439-0485.1983.tb00292.x</a>, 1983.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>21</label><mixed-citation>
Cox, T. E. and Smith, C. M.: Photosynthetic rapid light curves for <i>Padina sanctae-crucis</i> vary
with irradiance, aerial exposure, and tides in Hawaii's micro-intertidal
zones, Mar. Biol., 162, 1061–1076, <a href="http://dx.doi.org/10.1007/s00227-015-2649-1" target="_blank">doi:10.1007/s00227-015-2649-1</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>22</label><mixed-citation>
Cox, T. E., Schenone, S., Delille, J., Díaz-Castañeda, V.,
Alliouane, S., Gattuso, J. P., and Gazeau, F.: Effects of ocean acidification
on <i>Posidonia oceanica</i> epiphytic community and shoot productivity, J. Ecol., 103, 1594–1609,
<a href="http://dx.doi.org/10.1111/1365-2745.12477" target="_blank">doi:10.1111/1365-2745.12477</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>23</label><mixed-citation>
Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best practices
for ocean CO<sub>2</sub> measurements, PICES Special Publication 3, British
Columbia, Canada, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>24</label><mixed-citation>
Duarte, C. M.: Temporal biomass variability and production/biomass
relationships of seagrass communities, Mar. Ecol.-Prog. Ser., 51, 269–276,
<a href="http://dx.doi.org/10.3354/meps051269" target="_blank">doi:10.3354/meps051269</a>, 1989.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>25</label><mixed-citation>
Duarte, C. M. and Chiscano, C. L.: Seagrass biomass and production: a
reassessment, Aquat. Bot., 65, 159–174, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>26</label><mixed-citation>
Duarte, C. M., Marba, N., Gacia, E., Fourqurean, J. W., Beggins, J., Barron,
C., and Apostolaki, E. T.: Seagrass community metabolism: Assessing the
carbon sink capacity of seagrass meadows., Global Biogeochem. Cy., 24,
1–9, <a href="http://dx.doi.org/10.1029/2010GB003793" target="_blank">doi:10.1029/2010GB003793</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>27</label><mixed-citation>
Figueroa, F. L., Jiménez, C., Viñegla, B., Pérez-Rodríguez,
E., Aguilera, J., Flores-Moya, A., Altamirano, M., Lebert, M., and Häder,
D. P.: Effects of solar UV radiation on photosynthesis of the marine
angiosperm <i>Posidonia oceanica</i> from southern Spain, Mar. Ecol.-Prog. Ser., 230, 59–70, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>28</label><mixed-citation>
Gattuso, J.-P., Kirkwood, W., Barry, J. P., Cox, E., Gazeau, F., Hansson, L.,
Hendriks, I., Kline, D.I., Mahacek, P., Martin, S., McElhany, P., Peltzer, E.
T., Reeve, J., Roberts, D., Saderne, V., Tait, K., Widdicombe, S., and
Brewer, P. G.: Free-ocean CO<sub>2</sub> enrichment (FOCE) systems: present status
and future developments, Biogeosciences, 11, 4057–4075,
<a href="http://dx.doi.org/10.5194/bg-11-4057-2014" target="_blank">doi:10.5194/bg-11-4057-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>29</label><mixed-citation>
Gattuso, J. P., Epitalon, J. M., and Lavigne, H.: Seacarb: seawater carbonate
chemistry with R., available at:
<a href="http://CRAN.R-project.org/package=seacarb" target="_blank">http://CRAN.R-project.org/package=seacarb</a> (last access: (10 April 2016), 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>30</label><mixed-citation>
Genty, B., Briantais, J.-M., and Baker, N. R.: The relationship between the
quantum yield of photosynthetic electron transport and photochemical
quenching of chlorophyll fluorescence, Biochem. Biophys. Acta, 990, 87–92,
1989.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>31</label><mixed-citation>
Gobert, S., Laumont, N., and Bouquegneau, J.-M.: <i>Posidonia oceanica</i>
meadow: a low nutrient high chlorophyll (LNHC) system?, BMC Ecol., 2, 9–21,
<a href="http://dx.doi.org/10.1186/1472-6785-2-9" target="_blank">doi:10.1186/1472-6785-2-9</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>32</label><mixed-citation>
Gobert, S., Cambridge, M. L., Velimirov, B., Pergent, G., Lepoint, G.,
Bouquegneau, J.-M., Duaby, P., Pergent-Martini, C., and Walker, D. I.:
Biology of <i>Posidonia</i>, in Seagrasses: biology, ecology and
conservation, edited by: Larkum, A. W. D., Orth, R. J., and Duarte, C. M.,
Springer, Dordrecht, the Netherlands, 387–408, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>33</label><mixed-citation>
Hall-Spencer, J. M., Rodolfo-Metalpa, R., Martin, S., Ransome, E., Fine, M.,
Turner, S. M., Rowley, S. J., Tedesco, D., and Buia, M. C.: Volcanic carbon
dioxide vents show ecosystem effects of ocean acidification, Nature, 454,
96–99, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>34</label><mixed-citation>
Harder, D. L., Hurd, C. L., and Speck, T.: Comparison of mechanical
properties of four large, wave-exposed seaweeds, Am. J. Bot., 93, 1426–1432,
<a href="http://dx.doi.org/10.3732/ajb.93.10.1426" target="_blank">doi:10.3732/ajb.93.10.1426</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>35</label><mixed-citation>
Hemminga, M. A. and Duarte, C. M.: Seagrass ecology, University of Cambridge,
Cambridge University Press, United Kingdom, ISBN 0-521-66184-6, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>36</label><mixed-citation>
Hendriks, I. E., Olsen, Y. S., Ramajo, L., Basso, L., Steckbauer, A., Moore,
T. S., Howard, J., and Duarte, C. M.: Photosynthetic activity buffers ocean
acidification in seagrass meadows, Biogeosciences, 11, 333–346,
<a href="http://dx.doi.org/10.5194/bg-11-333-2014" target="_blank">doi:10.5194/bg-11-333-2014</a>, 2014a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>37</label><mixed-citation>
Hendriks, I. E., Duarte, C. M., Olsen, Y. S., Steckbauer, A., Ramajo, L.,
Moore, T. S., Trotter, J. A., and McCulloch, M.: Biological mechanisms
supporting adaptation to ocean acidification in coastal ecosystems, Estuar.
Coast. Shelf S., 152, 1–8, <a href="http://dx.doi.org/10.1016/j.ecss.2014.07.019" target="_blank">doi:10.1016/j.ecss.2014.07.019</a>, 2014b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>38</label><mixed-citation>
Henley, W. J.: Measurement and interpretation of photosynthetic
light-response curves in algae in the context of photoinhibition and diel
changes, J. Phycol., 29, 729–739, <a href="http://dx.doi.org/10.1111/j.0022-3646.1993.00729.x" target="_blank">doi:10.1111/j.0022-3646.1993.00729.x</a>,
1993.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>39</label><mixed-citation>
Invers, O., Romero, J., Perez, M., and Pérez, M.: Effects of pH on
seagrass photosynthesis: a laboratory and field assessment, Aquat. Bot., 59,
185–194, <a href="http://dx.doi.org/10.1016/S0304-3770(97)00072-7" target="_blank">doi:10.1016/S0304-3770(97)00072-7</a>, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>40</label><mixed-citation>
Invers, O., Zimmerman, R., Alberte, R. S., Perez, M., and Romero, J.:
Inorganic carbon sources for seagrass photosynthesis: an experimental
evaluation of bicarbonate use in species inhabiting temperate waters, J. Exp.
Mar. Biol. Ecol., 265, 203–217, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>41</label><mixed-citation>
Invers, O., Tomas, F., Perez, M., Romero, J., Tomàs, F., Pérez, M.,
and Romero, J.: Potential effect of increased global CO<sub>2</sub> availability on
the depth distribution of the seagrass <i>Posidonia oceanica</i> (L.)
Delile: a tentative assessment using a carbon balance model, B. Mar. Sci.,
71, 1191–1198, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>42</label><mixed-citation>
Jassby, A. D. and Platt, T.: Mathematical formulation of the relationship
between photosynthesis and light for phytoplankton, Limnol. Oceanogr., 21,
540–547, 1976.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>43</label><mixed-citation>
Jeffrey, S. and Humphrey, G.: New spectrophotometric equations for the
determination of chlorophylls a, b, c1 and c2 in higher plants, algae and
natural phytoplankton, Biochem. Physiol. Pfl., 167, 191–194,
1975.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>44</label><mixed-citation>
Jiang, Z. J., Huang, X.-P., and Zhang, J.-P.: Effects of CO<sub>2</sub> enrichment
on photosynthesis, growth, and biochemical composition of seagrass
<i>Thalassia hemprichii</i> (Ehrenb.) Aschers, J. Integr. Plant Biol., 52,
904–913, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>45</label><mixed-citation>
Jordà, G., Marbà, N., and Duarte, C. M.: Mediterranean seagrass
vulnerable to regional climate warming, Nature Climate Change, 2, 821–824,
<a href="http://dx.doi.org/10.1038/nclimate1533" target="_blank">doi:10.1038/nclimate1533</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>46</label><mixed-citation>
Kerrison, P., Hall-Spencer, J. M., Suggett, D. J., Hepburn, L. J., and
Steinke, M.: Assessment of pH variability at a coastal CO<sub>2</sub> vent for
ocean acidification studies, Estuar. Coast. Shelf Sc., 94, 129–137, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>47</label><mixed-citation>
Koch, M., Bowes, G., Ross, C., and Zhang, X. H.: Climate change and ocean
acidification effects on seagrasses and marine macroalgae, Glob. Change
Biol., 19, 103–132, <a href="http://dx.doi.org/10.1111/j.1365-2486.2012.02791.x" target="_blank">doi:10.1111/j.1365-2486.2012.02791.x</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>48</label><mixed-citation>
Littler, M. M. and Littler, D. S.: The evolution of thallus form and
survival strategies in benthic marine macroalgae: field and laboratory tests
of a functional form model, Am. Nat., 116, 25–44, 1980.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>49</label><mixed-citation>
Liu, X., Patasavas, M. C., and Byrne, R. H.: Purification and
characterization of meta-Cresol Purple for spectrophotometric seawater pH
measurements, Environ. Sci. Technol., 45, 4862–4868, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>50</label><mixed-citation>
Marbà, N. and Duarte, C. M.: Rhizome elongation and seagrass clonal
growth, Mar. Ecol.-Prog. Ser., 174, 269–280, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>51</label><mixed-citation>
Marbà, N., Hemminga, M. A., Mateo, M. A., Duarte, C. M., Mass, Y. E. M.,
Terrados, J., and Gacia, E.: Carbon and nitrogen translocation between
seagrass ramets, Mar. Ecol.-Prog. Ser., 226, 287–300, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>52</label><mixed-citation>
Martin, S., Rodolfo-Metalpa, R., Ransome, E., Rowley, S., Buia, M.-C. C.,
Gattuso, J.-P., and Hall-Spencer, J.: Effects of naturally acidified seawater
on seagrass calcareous epibionts, Biol. Lett., 4, 689–692,
<a href="http://dx.doi.org/10.1098/rsbl.2008.0412" target="_blank">doi:10.1098/rsbl.2008.0412</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>53</label><mixed-citation>
Martínez-Crego, B., Olivé, I., and Santos, R.: CO<sub>2</sub> and
nutrient-driven changes across multiple levels of organization in Zostera
noltii ecosystems, Biogeosciences, 11, 7237–7249,
<a href="http://dx.doi.org/10.5194/bg-11-7237-2014" target="_blank">doi:10.5194/bg-11-7237-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>54</label><mixed-citation>
Newcomb, L. A., Milazzo, M., Hall-Spencer, J. M., and Carrington, E.: Ocean
acidification bends the mermaid's wineglass, Biol. Lett., 11, 20141075,
<a href="http://dx.doi.org/10.1098/rsbl.2014.1075" target="_blank">doi:10.1098/rsbl.2014.1075</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>55</label><mixed-citation>
Ott, J. A.: Growth and production in <i>Posidonia oceanica</i> (L.) Delile,
Mar. Ecol., 1, 47–64, <a href="http://dx.doi.org/10.1111/j.1439-0485.1980.tb00221.x" target="_blank">doi:10.1111/j.1439-0485.1980.tb00221.x</a>, 1980.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>56</label><mixed-citation>
Ow, Y. X., Collier, C. J., and Uthicke, S.: Response of three tropical
seagrass species to CO<sub>2</sub> enrichment, Mar. Biol., 162, 1005–1017,
<a href="http://dx.doi.org/10.1007/s00227-015-2644-6" target="_blank">doi:10.1007/s00227-015-2644-6</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>57</label><mixed-citation>
Padilla, D. K.: Structural resistance of algae to herbivores: a biomechanical
approach, Mar. Biol., 90, 103–109, <a href="http://dx.doi.org/10.1007/BF00428220" target="_blank">doi:10.1007/BF00428220</a>, 1985.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>58</label><mixed-citation>
Palacios, S. L. and Zimmerman, R.: Response of eelgrass <i>Zostera marina</i> to CO<sub>2</sub>
enrichment: possible impacts of climate change and potential for remediation
of coastal habitats, Mar. Ecol.-Prog. Ser., 344, 1–13, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>59</label><mixed-citation>
Pasqualini, V., Pergent-Martini, C., Clabaut, P., and Pergent, G.: Mapping of
<i>Posidonia oceanica</i> using aerial photographs and side scan sonar:
application off the island of Corsica (France), Estuar. Coast. Shelf S., 47,
359–367, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>60</label><mixed-citation>
Peirano, A., Niccolai, I., Mauro, R., and Bianchi, C. N.: Seasonal grazing
and food preference of herbivores in a <i>Posidonia oceanica</i> meadow,
Sci. Mar., 65, 367–374, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>61</label><mixed-citation>
Pergent-Martini, C., Leoni, V., Pasqualini, V., Ardizzone, G. D., Balestri,
E., Bedini, R., Belluscio, A., Belsher, T., Borg, J., Boudouresque, C. F.,
Boumaza, S., Bouquegneau, J. M., Buia, M. C., Calvo, S., Cebrian, J.,
Charbonnel, E., Cinelli, F., Cossu, A., Maida, D. I., Dural, B., Francour,
P., Gobert, S., Lepoint, G., Meinesz, A., Molenaar, H., Mansour, H.,
Panayotidis, M. P., Peirano, A., Pergent, G., Piazzi, L., Pirrotta, M.,
Relini, G., Romero, J., Sanchez-Lizaso, J. L., Semroud, R., Shembri, P.,
Shili, A., Tomasello, A. and Velimirov, B.: Descriptors of <i>Posidonia oceanica meadows</i>: Use and
application, Ecol. Indic., 5, 213–230, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>62</label><mixed-citation>
Platt, T., Gallegos, C., and Harrison, W.: Photoinhibition of photosynthesis
in natural assemblages of marine phytoplankton, J. Mar. Res., 38, 687–701,
1980.
</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>63</label><mixed-citation>
Poore, A. G. B., Graba-Landry, A., Favret, M., Sheppard Brennand, H., Byrne,
M., and Dworjanyn, S. A.: Direct and indirect effects of ocean acidification
and warming on a marine plant–herbivore interaction, Oecologia, 173,
1113–1124, <a href="http://dx.doi.org/10.1007/s00442-013-2683-y" target="_blank">doi:10.1007/s00442-013-2683-y</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>64</label><mixed-citation>
Russell, B. D., Connell, S. D., Uthicke, S., Muehllehner, N., Fabricius, K.
E., and Hall-Spencer, J. M.: Future seagrass beds: Can increased productivity
lead to increased carbon storage?, Mar. Pollut. Bull., 73, 463–469,
<a href="http://dx.doi.org/10.1016/j.marpolbul.2013.01.031" target="_blank">doi:10.1016/j.marpolbul.2013.01.031</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>65</label><mixed-citation>
Sand-Jensen, K., Revsbech, N. P., and Jorgensen, B. B.: Microprofiles of
oxygen in epiphyte communities on submerged macrophytes, Mar. Biol., 89,
55–62, 1985.
</mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>66</label><mixed-citation>
de los Santos, C. B., Brun, F. G., Vergara, J. J., and Perez-Llorens, J. L.:
New aspect in seagrass acclimation: leaf mechanical properties vary spatially
and seasonally in the temperate species Cymodocea nodosa Ucria (Ascherson),
Mar. Biol., 160, 1083–1093, <a href="http://dx.doi.org/10.1007/s00227-012-2159-3" target="_blank">doi:10.1007/s00227-012-2159-3</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>67</label><mixed-citation>
Shaw, E. C., McNeil, B. I., Tilbrook, B., Matear, R., and Bates, M. L.:
Anthropogenic changes to seawater buffer capacity combined with natural reef
metabolism induce extreme future coral reef CO<sub>2</sub> conditions, Glob. Change
Biol., 19, 1632–1641, <a href="http://dx.doi.org/10.1111/gcb.12154" target="_blank">doi:10.1111/gcb.12154</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>68</label><mixed-citation>
Short, F. T. and Duarte, C. M.: Methods for the measurement of seagrass
growth and production, in Global seagrass research method, edited by: Short,
F. T. and Coles, R. G., Elsevier, Amsterdam, the Netherands, 155–180, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>69</label><mixed-citation>
Vassallo, P., Paoli, C., Rovere, A., Montefalcone, M., Morri, C., and
Bianchi, C. N.: The value of the seagrass <i>Posidonia oceanica</i>: A
natural capital assessment, Mar. Pollut. Bull., 75, 157–167, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib70"><label>70</label><mixed-citation>
Vizzini, S., Tomasello, A., Di Maida, G., Pirrotta, M., Mazzola, A., and
Calvo, S.: Effect of explosive shallow hydrothermal vents on <i>δ</i><sup>13</sup>C
and growth performance in the seagrass <i>Posidonia oceanica</i>, J. Ecol.,
98, 1284–1291, <a href="http://dx.doi.org/10.1111/j.1365-2745.2010.01730.x" target="_blank">doi:10.1111/j.1365-2745.2010.01730.x</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib71"><label>71</label><mixed-citation>
Vizzini, S., Di Leonardo, R., Costa, V., Tramati, C. D., Luzzu, F., and
Mazzola, A.: Trace element bias in the use of CO<sub>2</sub> vents as analogues for
low pH environments: implications for contamination levels in acidified
oceans, Estuar. Coast. Shelf S., 134, 19–30, <a href="http://dx.doi.org/10.1016/j.ecss.2013.09.015" target="_blank">doi:10.1016/j.ecss.2013.09.015</a>,
2013.

</mixed-citation></ref-html>
<ref-html id="bib1.bib72"><label>72</label><mixed-citation>
Waycott, M., Duarte, C. M., Carruthers, T. J. B., Orth, R. J., Dennison, W.
C., Olyarnik, S., Calladine, A., Fourqurean, J. W., Heck, K. L., Hughes, A.
R., Kendrick, G. A., Kenworthy, W. J., Short, F. T., and Williams, S. L.:
Accelerating loss of seagrasses across the globe threatens coastal
ecosystems., P. Natl. Acad. Sci. USA, 106, 12377–12381, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib73"><label>73</label><mixed-citation>
Zimmerman, R. C. A., Kohrs, D. G. A., Steller, D. L. B., and Alberte, R. S.
A.: Impacts of CO<sub>2</sub> enrichment on productivity and light requirements of
eelgrass, Plant Physiol., 115, 599–607, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib74"><label>74</label><mixed-citation>
Zimmerman, R. C., Hill, V. J., and Gallegos, C. L.: Predicting effects of
ocean warming, acidification, and water quality on Chesapeake region
eelgrass: Predicting eelgrass response to climate change, Limnol. Oceanogr.,
60, 1781–1804, <a href="http://dx.doi.org/10.1002/lno.10139" target="_blank">doi:10.1002/lno.10139</a>, 2015.
</mixed-citation></ref-html>--></article>
