<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0">
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-27-2016</article-id><title-group><article-title>Detection and spatiotemporal analysis of methane ebullition on thermokarst
lake ice using high-resolution <?xmltex \hack{\newline}?> optical aerial imagery</article-title>
      </title-group><?xmltex \runningtitle{Detection and spatiotemporal analysis of methane ebullition}?><?xmltex \runningauthor{P.~R.~Lindgren et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Lindgren</surname><given-names>P. R.</given-names></name>
          <email>pregmi@alaska.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Grosse</surname><given-names>G.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5895-2141</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Walter Anthony</surname><given-names>K. M.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Meyer</surname><given-names>F. J.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Geophysical Institute, University of Alaska Fairbanks,  Fairbanks, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research,
Potsdam, Germany</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Water and Environmental Research Center, University of Alaska Fairbanks, Fairbanks, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">P. R. Lindgren (pregmi@alaska.edu)</corresp></author-notes><pub-date><day>14</day><month>January</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>1</issue>
      <fpage>27</fpage><lpage>44</lpage>
      <history>
        <date date-type="received"><day>31</day><month>March</month><year>2015</year></date>
           <date date-type="rev-request"><day>20</day><month>May</month><year>2015</year></date>
           <date date-type="rev-recd"><day>12</day><month>November</month><year>2015</year></date>
           <date date-type="accepted"><day>20</day><month>November</month><year>2015</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016.html">This article is available from https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016.pdf</self-uri>


      <abstract>
    <p>Thermokarst lakes are important emitters of methane, a potent greenhouse
gas. However, accurate estimation of methane flux from thermokarst lakes is
difficult due to their remoteness and observational challenges associated
with the heterogeneous nature of ebullition. We used high-resolution (9–11 cm)
snow-free aerial images of an interior Alaskan thermokarst lake acquired
2 and 4 days following freeze-up in 2011 and 2012, respectively, to detect
and characterize methane ebullition seeps and to estimate whole-lake
ebullition. Bubbles impeded by the lake ice sheet form distinct white
patches as a function of bubbling when lake ice grows downward and around
them, trapping the gas in the ice. Our aerial imagery thus captured a
snapshot of bubbles trapped in lake ice during the ebullition events that
occurred before the image acquisition. Image analysis showed that low-flux
A- and B-type seeps are associated with low brightness patches and are
statistically distinct from high-flux C-type and hotspot seeps associated
with high brightness patches. Mean whole-lake ebullition based on optical
image analysis in combination with bubble-trap flux measurements was
estimated to be 174 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 28 and 216 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33 mL gas m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the years 2011 and 2012, respectively. A large
number of seeps demonstrated spatiotemporal stability over our 2-year
study period. A strong inverse exponential relationship (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> &gt; <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.79)
was found between the percent of the surface area of lake ice
covered with bubble patches and distance from the active thermokarst lake
margin. Even though the narrow timing of optical image acquisition is a
critical factor, with respect to both atmospheric pressure changes and
snow/no-snow conditions during early lake freeze-up, our study shows that
optical remote sensing is a powerful tool to map ebullition seeps on lake
ice, to identify their relative strength of ebullition, and to assess their
spatiotemporal variability.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Soils in the northern permafrost region contain 1300–1370 Pg organic
carbon with an uncertainty range of 930–1690 Pg (Hugelius et al., 2014). A
large amount of soil carbon in the Yedoma permafrost region (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 450 Pg)
is found in thick Holocene deposits in thermokarst lakes and basins,
undisturbed Pleistocene-age ice-rich silts known as yedoma, and Pleistocene
deposits which have thawed underneath lakes and later refrozen (Grosse et al., 2011;
Walter Anthony et al., 2014). However, permafrost degradation can facilitate
the transfer of this permafrost-stored carbon to the atmosphere in the form
of the greenhouse gases carbon dioxide (CO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and methane (CH<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
resulting in a positive feedback to global climate change (Zimov et al.,
2006; Walter et al., 2006; Schuur et al., 2008; Koven et al., 2011). One
common and effective form of permafrost degradation involves formation and
growth of thermokarst lakes (Grosse et al., 2013; Kokelj and Jorgenson,
2013), which tap into deep (up to 60 m) permafrost carbon pools (Zimov et
al., 1997; Walter et al., 2008).</p>
      <p><?xmltex \hack{\newpage}?>Thermokarst lakes are a prominent landscape feature in the high northern
latitudes (Smith et al., 2007; Grosse et al., 2013). They are formed in
closed depressions following the thawing of ice-rich permafrost or melting
of massive ice. Once initiated, the presence of a water body on permafrost
serves as a positive feedback to permafrost degradation. Depending on the
amount of excess ice content in permafrost, this positive feedback
accelerates the growth of thermokarst lakes in both lateral and vertical
directions (Jorgenson and Shur, 2007; Plug and West, 2009; Kokelj and
Jorgenson, 2013). Over many years, taliks (thaw bulbs) of perennially thawed
soil develop beneath thermokarst lakes (Hinzman et al., 2005; West and Plug,
2008; Rowland et al., 2011), creating conditions favorable for year-round
methane production through anaerobic decomposition of organic matter by
microbes (Zimov et al., 1997; Walter et al., 2006, 2008; Kessler et al.,
2012). During lateral expansion, thermal erosion along the lake margin also
releases both Holocene and Pleistocene organic matter from adjacent soils
into anaerobic lake bottoms, further enhancing methanogenesis (Zimov et al.,
1997; Walter Anthony et al., 2014).</p>
      <p>Ebullition (bubbling) is considered the dominant pathway of methane release
from lakes to the atmosphere (Keller and Stallard, 1994; Bastviken et al.,
2011). Methane produced in dense lake sediments and thaw bulbs emerges
primarily through intrasedimentary bubble tubes as point-source seeps on the
lake bed (Walter Anthony et al., 2010). In the high northern latitude
region, where lake surfaces freeze throughout the winter, most bubbles
emerging from the lake bed ascend through the water column and get trapped
by ice as gas pockets (Walter et al., 2008; Greene et al., 2014). Ongoing
ice growth can separate ice-trapped bubbles from an individual seep by thin
films of ice, resulting in vertically oriented bubble columns in the ice.
Walter et al. (2006) took advantage of this phenomenon to reveal locations
and relative strength of point sources of methane seep ebullition across
lake ice. They identified four major types of methane ebullition seeps based
on ice-bubble cluster morphology and they measured daily mean ebullition
rates (mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> standard error of mean) (Fig. 1) (Walter Anthony and
Anthony, 2013). It should be noted that the seep class-specific ebullition
rates reported represent the daily average of thousands of flux measurements, measured on
24 pan-Arctic lakes in continuous and discontinuous permafrost regions for up
to 700 days; however, bubbling within each class is highly episodic, and
bubbling rates of individual seeps are not constant over time (Walter
Anthony et al., 2010; Walter Anthony and Anthony, 2013): (1) A-type seeps
are characterized by isolated bubbles stacked in multiple vertical layers
with less than 50 % of all gas volume merged in bubble clusters. A-type
seeps have the lowest ebullition rate (22 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4 mL gas d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>; (2) B-type
seeps are dominated by laterally merged bubbles stacked in multiple
layers (more than 50 % of all gas volume merged in a bubble cluster). The
ebullition rate of this bubble type is 211 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 39 mL gas d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; (3) C-type
seeps, associated with an ebullition rate of 1726 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 685 mL gas d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, are characterized by single large gas pockets (usually
&gt; 40 cm in diameter) separated vertically by ice layers
containing few or no bubbles; and (4) hotspot seeps have the highest
ebullition rate, on average 7801 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 764 mL gas d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Due to
upwelling of water associated with frequent bubble streams, hotspots
generally appear as open water holes in lake ice following freeze-up.
Usually a thin snow–ice film develops over hotspots in winter, visually
masking them at the surface; however, ice blocks cut from the lake
throughout winter and spring reveal that hotspot bubbling maintains a large
ice-free cavity throughout winter (Greene et al., 2014).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Photos show four distinct patterns of point-source ebullition
seeps in early winter lake ice: <bold>(a)</bold> A-type; <bold>(b)</bold> B-type;
<bold>(c)</bold> C-type; <bold>(d)</bold> hotspot. The white speckles on the
background lake ice surface in <bold>(b)</bold> are snow/hoar ice crystals, not
bubbles; <bold>(e)</bold> a close-up (red box in the lake image shown in
<bold>(f)</bold>) shows the appearance of ebullition bubble patches as bright white
spots on the aerial image (natural color composite of red, green, and blue
bands) of Goldstream Lake (64.91<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 147.84<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W),
Fairbanks, Alaska, acquired on 14 October 2011. A rectangular wooden
instrument platform (highlighted by the blue box) also appears bright.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f01.jpg"/>

      </fig>

      <p>Accounting for methane ebullition from northern thermokarst lakes can
significantly improve estimates of lake contributions to regional and global
atmospheric carbon budgets (Walter et al., 2007; Bastviken et al., 2011).
However, due to challenges associated with the logistics of fieldwork in
remote locations as well as spatial and temporal heterogeneity of
ebullition, accurate estimation of methane flux from thermokarst lakes is
difficult (Casper et al., 2000; Bastviken, 2004; Wik et al., 2011).
Most studies have been carried out using field measurements to understand
the spatial and temporal variability of methane ebullition. However, the
insufficiency of field data is a recurring issue since it is difficult to sample
the entire lake area, particularly when lakes have remote locations. This
may lead to an unrealistic characterization of variability of ebullition
bubbles and a less accurate estimation of methane flux at a regional scale.
Recently, Walter Anthony and Anthony (2013) combined point-process modeling
with field-measured data to understand the drivers of ebullition spatial
variability in thermokarst lakes and provided ways to reduce uncertainty in
regional-scale lake ebullition estimates based on limited field data;
nonetheless spatially limited field sampling remains a hindrance to
whole-lake ebullition quantification.</p>
      <p>Remote sensing methods combined with field observations can help overcome
some of the limitations that exist in a sole field-survey method. One of the
major advantages of remote sensing tools is that they may provide the
possibility to map the entire population of methane ebullition bubbles on a
lake. Moreover, remote sensing can overcome the logistical difficulties that
exist in accessing methane-bubbling lakes in the remote regions of the
Arctic and Subarctic. Walter et al. (2008) and Engram et al. (2012)
demonstrated the potential application of synthetic aperture radar (SAR) satellite imagery to estimate
whole-lake ebullition from spatially limited field measurements of
ebullition along survey transects. These studies showed correlation of radar
backscatter values with the percent of the surface area of lake ice covered with
bubbles and field-measured methane ebullition rates based on bubble-trap
measurements from lakes. Additionally, Walter Anthony et al. (2012) used
aerial surveys to identify, photograph, and map large (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 to &gt; 300 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> bubbling-induced open water holes in
ice-covered lakes in Alaska associated with geologic methane seepage.
Geologic methane seeps differ distinctly from ecological seeps in associated
fluxes (i.e., fluxes of geologic seeps are several orders of magnitude
higher than for ecological seeps) and their spatial distribution is often
aligned with geological faults. Coupling aerial surveys with ground truth
flux measurements and laboratory analyses, this study showed that geologic
methane seepage is not extensive, but it is important in some regions of
Alaska underlain by leaky hydrocarbon reservoirs.</p>
      <p>Since open holes induced by bubbling in snow-covered lake ice are visually
distinct, and since lower-flux ebullition bubble clusters trapped inside ice
appear as bright white features that have a strong contrast against dark,
bubble-, and snow-free congelation ice (Fig. 1), there is the potential and
need to detect and quantify methane bubbles with optical remote sensing. In
this study, we explored high-resolution optical remote sensing images to
characterize methane ebullition seeps on Goldstream Lake, an interior Alaska
thermokarst lake, and to study their spatiotemporal dynamics.</p>
</sec>
<sec id="Ch1.S2">
  <title>Study site</title>
      <p>Goldstream Lake (64.91<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 147.84<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W; 195 m a.s.l.) is an
interior Alaska thermokarst lake covering an area of approximately 10 300 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>
with maximum and average depths of 2.9  and 1.6 m, respectively.
The lake formed in “yedoma-type” deposits of retransported late Quaternary
loess at the toe slope of Goldstream Valley in Fairbanks (Péwé,
1975; Kanevskiy et al., 2011; Walter Anthony and Anthony, 2013). Based on
remotely sensed aerial and satellite images, the lake partially drained
between 1949 and 1978 but has been expanding mainly along the eastern shore
since then (Fig. 1f). This active thermokarst expansion is also indicated by
spruce trees leaning lakeward along the eastern lake margin, and standing
dead trees submerged in the lake offshore of the eastern margin. The
vegetation around the lake is dominated by black spruce and willow. Cattail
(<italic>Typha</italic> spp.) grows along some shallow margins of the lake. Water lilies
(<italic>Nuphar</italic> spp.) are also found in several locations on the northern and
southwestern parts of the lake.</p>
      <p>Ebullition accounts for a total of 83 % of methane emission from
Goldstream Lake (Greene et al., 2014). The concentration of methane in
Goldstream Lake's bubbles is 82–89 % (Greene et al., 2014). Ice formation on
the lake usually occurs between the end of September and mid-October, reaches
maximum thickness by mid-March, and ice break-up occurs around the end of
April or early May. Vertically oriented layers of methane ebullition bubbles
(Fig. 1), representing point-source seeps, are widespread in the lake ice,
particularly along the eastern margin (Walter Anthony and Anthony, 2013).
Many hotspot seeps are also found near the eastern eroding shore and are
seen as open holes in lake ice during early winter and spring.</p>
</sec>
<sec id="Ch1.S3">
  <title>Methods</title>
      <p>We used three sets of data in our study: (1) high-resolution snow-free early winter lake ice images from fall 2011 and 2012, (2) high-resolution
snow-covered early winter lake images from fall 2012, and (3) field-based
surveys of ebullition bubble seep types and their fluxes.</p>
      <p>We first processed the aerial images of snow-free early winter lake ice
acquired in the fall of 2011 and 2012 and then mapped ebullition bubbles
trapped in the ice. We refer to the bubble features seen in our snow-free
images as “bubble patches” henceforth since the image resolution was not
sufficient to fully resolve smaller individual bubbles (Fig. 1). Then we
characterized imaged bubble patches based on field-collected ebullition
bubble seep data collected approximately 1–2 weeks after image acquisition
when ice was safe to walk on in the fall of 2011 and 2012 and again in
spring of the following year. We hypothesized that the brightness of bubble
patches correlates with the strength of methane flux associated with four
classes of ebullition bubble seeps (A, B, C, and hotspot) identified by
Walter Anthony et al. (2010). We estimated from aerial photos the bubble-patch density for each seep class and the mean whole-lake seep ebullition.
Finally, we examined the spatial patterns of seep locations in the lake with
respect to eroding thermokarst shores, and analyzed interannual variability
of seep occurrences by comparing imagery from different years.</p>
      <p>Due to similar spectral characteristics of open water and dark lake ice,
open-hole hotspots are difficult to map on snow-free lake ice images; but
they are easily identifiable on snow-covered lake ice images. Therefore, we
also collected high-resolution snow-covered aerial images in the fall of
2012 to map open-hole hotspots on the lake. We compared the locations of
hotspots in aerial images with maps of hotspot locations determined by field
measurements over multiple years to assess hotspot regularity.</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S3.SS1">
  <title>Remotely sensed high-resolution image acquisition</title>
      <p>We scheduled low-altitude, high-resolution aerial image acquisitions to map
and characterize methane ebullition bubble patches (A, B, C, and ice-covered
hotspots) during a narrow time window in the early winter, when first ice
had formed but was still snow-free. Images were acquired in nadir with a
Navion L17a plane using a Nikon D300 camera system mounted in a belly port on
14 October 2011 and 13 October 2012, 2 and 4 days following freeze-up,
respectively. Flight altitude for the acquisitions was <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 750 m a.s.l. in 2011 and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 587 m a.s.l. in 2012. Image scale was 1 : 20 000
and 1 : 17 000 for 2011 and 2012, respectively, which in turn corresponds to
ground sampling distances (GSD) of 11 and 9 cm.</p>
      <p>We collected images of the snow-covered lake in fall 14 October 2012 using
an unmanned aerial vehicle (UAV) mounted with an Aptina MT9P031 board camera
to map open-hole hotspot seep locations. The images were acquired from a
flying height of approximately 230 m a.s.l., corresponding to an image scale
1 : 30 000 and GSD of 6 cm. All the images consisted of three visible bands:
red, green, and blue (RGB).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Ground truth field data</title>
      <p>We collected the point location data of (1) the lake perimeter and
permanently installed reference markers as ground control points (GCPs) to
perform rectification of aerial images and (2) methane ebullition seeps on
Goldstream Lake in the fall and spring of 2011 and 2012 using a survey-grade
LEICA VIVA<sup>™</sup> real-time kinematic Differential Global Positioning
System (DGPS) with centimeter accuracy.</p>
<sec id="Ch1.S3.SS2.SSS1">
  <title>Fall 2011 and 2012 field surveys</title>
      <p>We surveyed the lake perimeter and measured several permanently installed
reference markers. We conducted detailed ebullition ice-bubble surveys in
October 2011 2 weeks after image acquisition when lake ice was safe to
walk on. The surveys were performed within two large polygons that are
identified in Fig. 1f: one about 7 m from the eastern
thermokarst shore and a second near the center of the lake. The surveyed
polygons in the east and center of the lake covered <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 428 and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 236 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>, respectively, and were reported in
detail in Walter Anthony and Anthony (2013) and Greene et al. (2014).</p>
      <p>In October 2012, we performed bubble surveys 6 days after image acquisition
in three other polygons (total area <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 200 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> randomly
distributed across the lake (Fig. 1f). We performed bubble surveys earlier
after image acquisition than in 2011 to avoid white ice condition. We used
the seep identification method described by Walter Anthony et al. (2010).</p>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <title>Spring 2011 and 2012 field surveys</title>
      <p>While field-based estimations of A-, B-, and C-type seeps were limited to
survey plots covering about 13 % of the lake area, the locations of
hotspot seeps were mapped across the whole lake using detailed DGPS surveys
of open holes in October and April 2011 and 2012. Hotspots were detected
visually at these times of the year as open water holes in lake ice.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <title>Spring 2013 field surveys</title>
      <p>In April 2013, we extracted several blocks of the full lake ice column at
seep locations to investigate the temporal ebullition patterns that
developed throughout the winter season.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Mapping ebullition seeps on lake ice</title>
<sec id="Ch1.S3.SS3.SSS1">
  <title>Pre-processing of images</title>
      <p>We conducted the following image pre-processing. (1) We performed mosaicking
of multiple images of Goldstream Lake to construct a complete image of the
lake. This was achieved by using Agisoft PhotoScan Professional
Software<sup>™</sup> Version 0.9.0. (2) We then performed geometric image
rectification with 22 DGPS-collected GCPs using a second-order polynomial
transformation with bilinear resampling. The GCPs were distributed mostly
around the lake perimeter. Some of them were identifiable reference points
on the lake such as cattail vegetation and a LiCor methane analyzer
installed on a platform on the lake. (3) For image enhancement we applied a
feature linear transformation on all three visible spectral bands of the
lake images using unstandardized principal component analysis (PCA). Both
geometric and spectral image transformations were performed in
ENVI<sup>™</sup> image processing software, Version 4.8. PCA spectral
transformation produced three independent principal component (PC) bands.
The first band (PC 1 band) consisted of the variables that explained the
most variance (&gt; 98 %) in the data set attributing to bubble
patches (Fig. 2, Supplement Sect. S1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Panel <bold>(a)</bold> shows the 2011 bubble-patch map of Goldstream Lake overlaid
on a principal component 1 image (PC 1, inverted). The land around the lake is
shown in a true-color composite of red, green, and blue bands (RGB). Panels
<bold>(b)</bold> and <bold>(c)</bold> show the area highlighted in the black box in
panel <bold>(a)</bold> overlaid on RGB composite and PC 1 respectively. Bright
bubble patches appear distinct against dark lake ice on PC 1. A rectangular
wooden instrument platform in shown in the center of the lake (blue box) as well as
clusters of lily pads (one example is highlighted by the green box) on the northern
and southwestern parts of the lake (see Fig. 1) also appear bright on PC 1.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f02.jpg"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <title>Identification of bubble patches on snow-free lake ice</title>
      <p>We applied a classification technique based on object-based image analysis
(OBIA) to semi-automatically identify and map methane ebullition bubble
patches in the PCA-transformed images using eCognition
Developer<sup>™</sup> 8 (Lindgren et al., 2015). Our object-based
classification method comprised two steps: (1) image segmentation, i.e.,
aggregation of homogenous image pixels based on their spatial and spectral
homogeneity into meaningful clusters known as image objects, and (2) classification
of image objects (Navulur, 2007; Blaschke and Strobl, 2001).
Varying ice conditions on the lake such as (a) clear, dark congelation ice,
(b) milky white snow–ice, and (c) ice with shadows from neighboring trees
added challenges to identifying ebullition bubble patches. We were able to
resolve these challenges by integrating semantic information associated with
image objects in classification (Lindgren et al., 2015). For this, the
scene is first decomposed into meaningful regions that represent different
areas of lakes such as vegetation and shadow, dark, and white ice. These
regions are then organized in a conceptual image object hierarchy, creating a
semantic network between different sized image objects – large-scale objects
in the upper level called “super-objects”, and small-scale objects in the lower
level called “sub-objects” (Supplement Fig. S1; Lindgren et al., 2015). For
example, the lake area is a super-object composed of sub-objects associated
with various lake ice characteristics (e.g., shadow, dark black ice), whereas
areas of specific lake ice characteristics are super-objects of our final
target feature, ebullition bubble patches. At each level, image segmentation
and classification are performed to delineate and label target regions. For
example in the first level, segmentation is performed on the whole lake
image to identify lake shore and lake. In the second level, only the lake
region is segmented and image objects derived from the lake are classified
into different lake ice characteristics. The process continued as it
proceeded towards lower and finer classification levels until bubble patches
were identified in the lake ice in the final stage. This approach of
detecting image objects from coarser to finer scale has been described as an
effective way to classify images in OBIA (Blaschke et al., 2008).</p>
      <p>More information on this hierarchical approach of bubble-patch
identification can be found in the Supplement (Supplement Sect. S2) and
in Lindgren et al. (2015).</p>
</sec>
<sec id="Ch1.S3.SS3.SSS3">
  <title>Identification of open-hole hotspots on snow-covered lake ice</title>
      <p>In images acquired after the first snow fall, hotspots appeared dark against
the snow-covered lake. Hence, they were mapped using a simple contrast and
split segmentation technique in eCognition
Developer<sup>™</sup>
(Definiens, 2007). This approach involves choosing a
threshold value on the RGB image bands for the algorithm to maximize the
contrast between hotspots and snow-covered lake pixels that separates the
image content into dark objects (consisting of pixels below the
threshold, i.e., hotspots) and bright objects (consisting of pixels above the
threshold, i.e., snow-covered lake ice).</p>
</sec>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Statistical analysis</title>
<sec id="Ch1.S3.SS4.SSS1">
  <title>Interpretation of image data results</title>
      <p>We extracted PC 1 gray values of individual ebullition bubble patches mapped
in images from the year 2011 and 2012. PC 1 values of the image ranged
between 0 and 255. Bubble patches are visually bright in true-color composite
(RGB composite) images but appeared darker (i.e., low PC 1 values) than the
surrounding lake ice in the PC 1 band (Supplement Fig. S2). Therefore, we
inverted PC 1 values of bubble patches to make it visually intuitive, i.e.,
bubbles that appeared bright in natural color composite also appeared bright
in the PC 1 band (Fig. 2). Henceforth, we refer to this brightness obtained in
the inverted PC 1 as “PC 1 brightness”.</p>
      <p>We assessed the relationship of ebullition bubble-patch PC 1 brightness
values with four distinct types of ebullition seeps that we identified
during our field surveys. We performed an analysis of variance (ANOVA) to
test the null hypothesis that the mean PC 1 values (and thus true bubble
brightnesses via its inverse relationship with the PC 1) of four types of
seeps are not significantly different. We applied a post-hoc Tukey's honest
significant difference (HSD) test, in case the null hypothesis was rejected,
to identify significantly distinct seeps. Results of this analysis are shown
in Sect. 4.1.</p>
</sec>
<sec id="Ch1.S3.SS4.SSS2">
  <title>Classification of bubble patches</title>
      <p>We applied a supervised classification using a maximum-likelihood classifier
(MLC) on the three original visible bands and the extracted PC 1 band to
classify mapped bubble patches into four distinct seep classes. The MLC
calculates a Bayesian probability function from the input training classes
and then assigns each pixel in the image to the class of highest membership
probability (Mather, 2009). We collected 98 random samples, 35 for training
and 63 for validation, on the 2011 image and similarly 181 random samples,
50 for training and 131 for validation, on the 2012 image. The samples were
located at seep locations identified using field-collected DGPS data points.</p>
      <p>The MLC approach categorized bubble patches solely based on the pixel
spectral characteristics, i.e., only using the brightness values of the
training samples. Since the size of bubble patches is also an additional
important indicator of seep class and methane flux (Walter Anthony et al.,
2010), in a subsequent step, we further refined our classification results
by integrating size as an additional feature to more accurately assign
bubble patches with a seep type (Supplement Sect. S3, Table S1). Finally, we
estimated the seep density and mean whole-lake ebullition rate by assigning
the mean long-term flux values for seep types provided by Walter Anthony and
Anthony (2013) to our classified bubble patches.</p>
</sec>
<sec id="Ch1.S3.SS4.SSS3">
  <title>Analysis of spatial distribution of bubble patches</title>
      <p>We studied the spatial distribution of ebullition bubble patches as a
function of distance from the eroding eastern thermokarst shore. For this,
we divided the lake area into multiple 5 m wide zones starting from the
eastern eroding margin as mapped in a 1949 aerial image (Fig. 1). Lake zones
were created on both sides of the 1949 lake margin to cover the present-day
lake area. We calculated the percent of lake ice area covered with
ebullition bubble patches for each zone and then analyzed its relationship
to the distance from the eastern shore lines of the lake observed in 1949,
1978, and 2012.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS4.SSS4">
  <title>Analysis of temporal pattern of bubble patches</title>
      <p>We evaluated the multi-temporal (year 2011 and 2012) variability of
ebullition bubble patches and assessed their regularities in space and time.
We utilized a marked point-process model to analyze spatial seep patterns in
our multi-year bubble-patch data set derived from the images. Point-process
modeling was performed on a set of bubble-patch centroids with their
respective location and year information, which served as a marked point
data set for the model, to derive and test the spatial characteristics of
bubble-patch distribution against a null hypothesis based on complete
spatial randomness. The null hypothesis suggests that the bubble patches are
the results of a spatially random process over the study area and thus the
difference of spatial patterns between years is random, i.e., the locations
of bubble patches are independent when comparing between years (Bivand et
al., 2008). For this, we generated a multi-type nearest-neighbor distance
function derived from the locations of the bubbles mapped in the images
using  Gcross from the spatstat statistical package in R (Baddeley and Turner,
2005).  Gcross first determines clustering parameters for the data set in the first
year. These clustering parameters are then used to model the expected number
of the second-year point given a certain distance from the first-year points
if the second-year point placement is random relative to the first-year point
placement. Based on the deviation between observed empirical value and
expected theoretical value estimated by the model, we determined the
stability of seep locations between 2011 and 2012. Similarly, we performed
the multi-type nearest-neighbor distance function analysis using  Gcross on the
field data set of hotspot locations collected in year 2011 and 2012 to check
regularity of hotspots.</p>
      <p>We also considered that the centroid of a bubble patch, representing an
ebullition bubble-patch point location, could move from one year to another
due to changes in the shape and size of a bubble patch or changes in bubble-tube
configuration in the sediment. We compared the overlap area between
ebullition patches mapped in 2011 and 2012 images. If some area of a 2011
bubble patch appeared within the area of a 2012 bubble patch or vice versa,
then we considered the bubble patch to be stable in location (i.e., reappearing).
We assumed that the overlapping bubble patches originated from the same
point-source seep. We checked location stability among four classes of
overlapping patches that were defined by setting thresholds on area overlap:
“all overlapping bubble patches”, “more than 25 % area overlap”, “more
than 50 % area overlap”, and “more than 75 % area overlap”.</p>
      <p>We used a map of open-hole hotspot seeps derived from UAV images to compare
the frequency of hotspots with hotspot occurrences observed during multiple
years of fieldwork by Greene et al. (2014).</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Results and discussion</title>
<sec id="Ch1.S4.SS1">
  <title>Relationship between bubble-patch brightness and field-measured methane
flux</title>
      <p>We found that PC 1 brightness values of bubble patches correlated with the
strength of field-measured methane flux of ebullition seeps (A, B, C and
hotspot seeps). The lowest mean PC 1 brightness belonged to A-type seeps
followed by B-type seeps in both 2011 and 2012 (Fig. 3). The highest mean
PC 1 brightness was demonstrated by hotspots in 2011 but C-type seeps had
slightly higher mean brightness in 2012 (Fig. 3). Our ANOVA test rejected
the null hypothesis that the mean PC 1 values of the different seep types
are the same suggesting significant distinctions between mean PC 1
brightness values of different seep classes. Further post-hoc analysis using
Tukey's HSD test demonstrated that C- and A-type, hotspot and A-type, and
hotspot and B-type seeps are significantly distinct based on their mean PC 1
with <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values &lt; 0.05 (Supplement Table S2). We thus conclude that
higher-flux seeps (hotspot and C-type) are associated with brighter bubble
patches, and lower-flux seeps (A- and B-type) are associated with darker
bubble patches.</p>
      <p>An absolute discrimination of individual seep type based on brightness was
not supported by the post-hoc tests due to overlapping brightness ranges
between different seep types (Fig. 3). This is likely because ebullition is
episodic with varying bubbling rates over time and because individual
low-flux methane seeps were not resolved given the spatial resolution of the
image. A possible explanation for low PC 1 brightness of some hotspots is
that fresh thin nighttime ice temporarily covered some hotspots on the
image acquisition day, allowing the formation of few small white gas bubbles,
while much of the remaining gas escaped through cracks in the thin ice,
resulting in low true brightness for these high-flux seeps. We have observed
this phenomenon on several occasions during our field visits in early winter
and spring, particularly on days when temperatures stayed low and hotspots
were covered with a few millimeters of ice with small bubbles beneath (Fig. 4);
these hotspots usually open up when atmospheric temperature rises again
during the day. Conversely, hotspots that remained open could not be
identified in our snow-free lake ice imagery due to spectral similarities
between open water and clear black ice (Fig. 1). ANOVA analysis was only
performed on ice-covered hotspots.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F3"><caption><p>Box plots are shown of PC 1 brightness values for bubble patches with different classes of seeps in 2011 <bold>(a)</bold> and 2012 <bold>(b)</bold>.
Significant differences (<inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values &lt; 0.05) based on their PC 1 mean
brightness values were found between C- and A-type seeps, hotspot and A-type
seeps, and hotspot and B-type seeps for 2011; and C- and A-type seeps,
hotspot and A-type seeps for 2012. SD signifies standard deviation.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f03.jpg"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Panels <bold>(a–b)</bold> show a close-up of low-altitude aerial images from
Goldstream Lake (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10–15 m from the eastern thermokarst margin),
Fairbanks, Alaska (the same aerial extent shown in <bold>(a)</bold> October
2011; <bold>(b)</bold> October 2012). The red box (i) highlights a densely
packed cluster of millimeter-scale ebullition bubbles (tiny-type seep) in both years.
A few B- or C-type seeps also occurred among the tiny-type ebullition bubbles
inside the area marked by the red square. The red circle (ii) shows an area
of hotspots. In 2011, the hotspots appear dark, similar to clear black ice
surrounded by a bright circular patch, likely hoar frost formed around open
water holes. <bold>(c)</bold> An ice block cross section with the tiny-type seep
bubbles in the bubble cluster area is shown in area (i). <bold>(d)</bold> In April
2012, the hotspot highlighted in area (ii) seems to be mostly covered with a
very thin layer of fresh black ice with a few bubbles trapped beneath;
however, there was a mostly ice-free cavity in the ice above the locations of the hotspots
while the rest of the lake ice was still <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 cm thick.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f04.jpg"/>

        </fig>

      <p>We found that a large number of A-type seeps clustered together were not
mapped as individual bubble patches but rather as a single large bubble
patch. A-type seeps and high-flux seeps that were close together were also
mapped in a single feature associated with a brighter bubble patch.
Therefore, some A-type seeps showed high PC 1 brightness values. Similar to
A-type seeps, occasionally individual B-type seeps were also not distinct.
In a time series analysis of bubbling frequency by A- and B-type seeps,
Walter Anthony et al. (2010) showed that bubbling from these shallow-sourced
seeps is highly seasonal. Bubbling rates are high in summer when surface
sediments are warmer, and low in winter when sediments cool down. Bubble
traps left in place over these seep types year round revealed that low-flux
seeps can have periods of no bubbling for up to several months. Ice blocks
harvested by us in spring over seeps marked as A-type seeps in October
confirm this pattern (Supplement Fig. S3). It is very likely that A- and
B-type seep conduits were present in the sediments, but not actively
bubbling during the 2- and 4-day periods after ice formation captured
by the 2011 and 2012 imagery. Thus they did not appear under the given
spatial resolution of the image and its specific acquisition time. Also,
bubble traps placed over C-type seeps year round revealed that these seeps
can also undergo long periods (weeks to months) of no bubbling, but when
they bubble, the bubbling rates are usually very high (Walter Anthony et
al., 2010). This intermittent flux behavior probably contributed to some
discrepancies in the relationship between bubble-patch brightness derived
from images that captured a snapshot of ebullition activity and methane flux
values of seeps estimated from long-term field observations (Table 1).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Seep density and estimated mean whole-lake ebullition flux of
Goldstream Lake, Fairbanks, Alaska, was derived from 2011 and 2012 optical aerial
image data set and from ground surveys. The ground survey estimates are from
previously published studies by Walter Anthony and Anthony (2013) and Greene
et al. (2014) based on ground surveys conducted over multiple years
(2007–2011) at Goldstream Lake.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:colspec colnum="6" colname="col6" align="center"/>
     <oasis:colspec colnum="7" colname="col7" align="center"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col6">Seep density (seeps m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry rowsep="1" colname="col7">Mean whole-lake ebullition</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Surveys</oasis:entry>  
         <oasis:entry colname="col2">A</oasis:entry>  
         <oasis:entry colname="col3">B</oasis:entry>  
         <oasis:entry colname="col4">C</oasis:entry>  
         <oasis:entry colname="col5">Hotspot</oasis:entry>  
         <oasis:entry colname="col6">All seeps</oasis:entry>  
         <oasis:entry colname="col7">(mL gas m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Aerial (14 Oct 2011)</oasis:entry>  
         <oasis:entry colname="col2">0.026</oasis:entry>  
         <oasis:entry colname="col3">0.059</oasis:entry>  
         <oasis:entry colname="col4">0.019</oasis:entry>  
         <oasis:entry colname="col5">0.017</oasis:entry>  
         <oasis:entry colname="col6">0.119</oasis:entry>  
         <oasis:entry colname="col7">174 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 28</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Aerial (13 Oct 2012)</oasis:entry>  
         <oasis:entry colname="col2">0.061</oasis:entry>  
         <oasis:entry colname="col3">0.083</oasis:entry>  
         <oasis:entry colname="col4">0.021</oasis:entry>  
         <oasis:entry colname="col5">0.021</oasis:entry>  
         <oasis:entry colname="col6">0.185</oasis:entry>  
         <oasis:entry colname="col7">216 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Ground surveys</oasis:entry>  
         <oasis:entry colname="col2">0.366</oasis:entry>  
         <oasis:entry colname="col3">0.099</oasis:entry>  
         <oasis:entry colname="col4">0.032</oasis:entry>  
         <oasis:entry colname="col5">0.011</oasis:entry>  
         <oasis:entry colname="col6">0.508</oasis:entry>  
         <oasis:entry colname="col7">170 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 54</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>In other parts of Goldstream Lake, especially along the eastern shore, we
found large patches of many individual ebullition bubbles (each typically 3
to 10 mm diameter) that formed large diffuse patches rather than clustering
as tightly packed bubbles the way A, B, C, and hotspot seeps do. In our
optical images, these ebullition bubbles appeared as irregular patches of
fuzzy, white-colored bright ice with some bright regular bubble spots (Fig. 4).
Therefore, the brightness values corresponding to the surrounding
diffuse patches were assigned to other seeps, particularly to low-flux seeps
that were within the patch and had not expressed completely when the images
were acquired. Until recently, these millimeter-scale ebullition bubbles were only
recorded in transect-survey data as “tiny-type” seep but never assigned a mean
daily flux value or included in whole-lake ebullition estimates due to a
lack of associated flux field measurements. Recent flux measurements made
continuously year round with submerged bubble traps on the tiny-type seep
class in Goldstream Lake and other lakes suggest that fluxes from these seeps
may also be important (Walter Anthony et al., unpublished). Analysis of
bubbles collected with bubble traps placed over tiny-type seeps revealed
that these bubbles were 60–80 % methane in volume (Walter Anthony et al.,
unpublished). When we extracted an ice block in spring 2013, we observed
that tiny-type ebullition had been frequent throughout winter, resulting in
long, vertically oriented stacks of tiny ebullition bubbles trapped in ice
(Fig. 4).</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Classification of bubble patches</title>
      <p>The overall MLC classification accuracy for differentiating seep types was
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 % for both 2011 and 2012 (Supplement Table S3). The
classifier performed better to identify the lowest flux seeps (A-type) and
the highest flux seeps (hotspot-type). B-type and C-type seeps showed high
error of commission, mostly arising from the misidentification of A-type
seeps and hotspots. C-type seeps had the largest error of omission since they were
mostly misclassified as B-type seeps in 2011 and hotspots in 2012.</p>
      <p>Generally higher densities of A-type seeps (and also slightly in B- and
C-type seeps) in ground surveys (Walter Anthony and Anthony, 2013; Greene et
al., 2014) compared to aerial images (Table 1) can be explained by the time
in which observations were made and image resolution. Results reported in
Walter Anthony and Anthony (2013) and Greene et al. (2014) are based on
ground surveys conducted over multiple years (2007–2011) at Goldstream Lake
usually 1 to 2 weeks following freeze-up when ice was safe to walk on
(Walter Anthony et al., 2010). Since our aerial surveys were conducted only
2–4 days after ice formation, and the frequency of bubbling events from
A-type seeps is often weeks to months in winter, it is not surprising that
the field surveys several weeks after ice formation capture an order of
magnitude more A-type seep bubbles. Additionally, it is very likely that
some active A-type seeps that occurred in very small patches were not
distinct under the given resolution of the aerial images. Relatively more
frequent bubbling in B- and C-type seeps allows for similar seep density
values between ground surveys and aerial images; however, as expected, the
2012 seep densities are closer to the ground-ice survey values due to (a)
more time since freeze-up and (b) a much higher barometric pressure drop
preceding the aerial image acquisition in October 2012 compared to October
2011. It is well established that ebullition dynamics are related to changes
in barometric pressure (Mattson and Likens, 1990; Fechner-Levy and Hemond,
1996; Scandella et al., 2011).</p>
      <p>The comparison of hotspot densities in optical images vs. ground surveys in
Table 1 also shows the expected pattern. The ground-survey data of hotspots
reflect multiple years of surveys of whole-lake hotspots when ice is thick
enough to safely walk on. When ice is very thin a few days after freeze-up,
more open holes are present on the lake and classified as hotspot seeps in
aerial images. A week or more later, many holes freeze over and will be
classified as C-type seeps in ground surveys. This could have also led to a
high classification error for C-type seeps. The total density of C-type and
hotspot seeps combined remains consistent (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.04 seeps m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
in both aerial and ground observations (Table 1). This also
indicates that some of the seeps identified as hotspots several days after
freeze-up in aerial photos really become what we classify as C-type seeps
(ice-sealed at the surface) within a week or more following freeze-up.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Estimation of whole-lake methane flux</title>
      <p>Our image-based analysis shows the whole-lake flux to be 174 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 28
and 216 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33 mL gas m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the
year 2011 and 2012, respectively. The uncertainty terms are based on the
standard error of the means of field-measured fluxes for seep classes. The
higher-flux estimate in 2012 is due to the presence of a large number of
bubble patches in 2012 (0.185 seeps m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> compared to 2011 (0.119 seeps m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
(Table 1). The field-based estimate of whole-lake ebullition for
Goldstream Lake using ice-bubble transect surveys (170 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 54 mL gas m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, was slightly at the low end of the estimates based on
optical imagery analysis from 2011 and 2012 respectively. It is conceivable
that the field-based transect surveys might yield a lower flux than
whole-lake seep analyses given that seeps are spatially rare, and field
surveys often cover &lt; 1 % of the lake surface area (Walter Anthony
and Anthony, 2013). However, on Goldstream Lake, where our field transect
bubble surveys covered 13 % of the lake area for A, B, and C-type seeps and
100 % of the lake area for hotspots, the higher estimates based on optical
imagery appear to be due to an overestimation of hotspots in the
early-acquisition date aerial image analysis. It is important to note that
while the whole-lake methane flux estimates from our aerial survey are close
to those based on ground surveys, the flux estimates for individual seep
types may vary between the methods. It is also possible that with aerial
surveys we are underestimating the total contribution of methane flux from
low-flux seeps because they had not expressed completely when we acquired
our aerial photos and that we are overestimating the contribution from high-flux seeps.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Spatial distribution of bubble patches in relation to the thermokarst lake
margin</title>
      <p>High methane production in response to thermokarst activity on the
Goldstream Lake is evident from the distribution pattern of ebullition bubble
patches at the eroding margins in different years. We found a strong inverse
relationship (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values of 0.86 and 0.79 for the years 2011 and 2012,
respectively, with <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values &lt; 0.05) between the ebullition bubble patch
area covering the lake ice and the distance from the rapidly eroding eastern
margin of the lake (Fig. 5). The percent surface area of lake ice covered
with ebullition bubble patches ice decreased with distance from the active
erosion margin. Thermo-erosion as well as talik growth on the expanding
eastern shore releases labile Pleistocene-aged organic matter as permafrost
thaws, enhancing anaerobic microbial activity in the lake and talik
sediments, and leading to enhanced methane emissions along this shore
(Brosius et al., 2012; Walter Anthony and Anthony, 2013). Holocene-aged
carbon from vegetation and active layer soils is also eroded and
additionally produced within the lake, further fueling microbial methane
production (Walter Anthony et al., 2014). Walter Anthony and Anthony (2013)
found an interesting relationship between lake bed morphology and ebullition
bubble seep density on Goldstream Lake. They found dense clusters of
ebullition seeps distributed <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 m apart across the lake that
matched the spacing of baydjarkah on the lake bed. This indicates that most
of the methane gas bubbles originated from the top of baydjarakhs, consisting
of organic-rich thawed permafrost soil. While we did not conduct specific
analyses in our study, such patterns should be detectable in optical remote
sensing images of lake ice as well.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Panel <bold>(a)</bold> shows an aerial image acquired on 14 October 2011 with lake
perimeters from 1949 (yellow shoreline), 1978 (orange), and 2012 (red). Lake
area change between 2011 and 2012 is minimal. The lake is divided in zones of
5 m width (white lines), for which the percent of bubble patch area was calculated
for comparison to the distance from the rapidly expanding eastern lake
margin. Panel <bold>(b)</bold> shows the inverse exponential relationship between bubble patch
percent cover and distance from the eastern thermokarst margin of Goldstream
Lake, Fairbanks, Alaska.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f05.jpg"/>

        </fig>

      <p>We observed fewer ebullition bubble patches in the center of the lake, which
we interpret as a sign that labile Pleistocene-aged organic carbon in the
talik under this area has been largely depleted, and unlike at the edge
along the active erosion margin, there is no significant additional
accumulation of ancient labile carbon in the lake center (Brosius et al.,
2012). Radiocarbon dating of bubble patches found in the lake center showed
that these seeps originate from Holocene-aged and more recent organic matter
that is found in the upper lake sediments (Brosius et al., 2012). Generally,
methane bubbling was the lowest along the 1949 eastern lake margin and the
highest along the 2012 eastern lake margin (Fig. 5), indicating that
depletion of labile carbon progressed since these areas were included in the
lake, and the active thermo-erosion margin migrated eastward. This shows that
optical remote sensing is a powerful tool to understand the spatial
variability of methane ebullition on thermokarst lakes.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6" specific-use="star"><caption><p>A comparison of bubble patches visible in thin lake ice 2 days after
freeze-up in October 2011 (left-side images) and 4 days after freeze-up in
October 2012 (right side images) is shown. Image pairs in <bold>(a)</bold> and <bold>(b)</bold>
represent the same locations in 2011 and 2012. Four major characteristics of
bubble patches are identified in panel <bold>(a)</bold>: (i) bubble patches may
shift up to 50 cm in location (geolocation error &lt; 20 cm) in
non-consistent directions; (ii) bubble patch size and morphology varies
between years during the first few days following freeze-up; (iii) bubble
patches visible during the first few days of freeze-up in one year are not
visible during the first few days of freeze-up in another year; and (iv)
bubble patches are similar in shape but not in size. Panel <bold>(b)</bold> shows
another example of horizontal shift of bubble patches (i).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f06.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS5">
  <title>Multi-year comparison of bubble patch characteristics: 2011 and
2012</title>
      <p>We observed four possible characteristics of bubble patch dynamics in our
images (Fig. 6). (i) Bubble patches may move horizontally; (ii) bubble
patches do not maintain the same morphology between years (e.g., single
bubble patches re-appear in a cluster of multiple patches the next year or
vice-versa); (iii) bubble patches appear in an image in one year and not
another; and (iv) bubble patches maintain the location and shape but patch
size is different between the years. It is important to note that these
observations are made during the two very short windows of time 2–4 days
after freeze-up. Our analysis does not take into account the changes in
long-term bubble patch morphology. Hence, it is important to highlight that
the characteristics of bubble patches are driven by the dynamics of bubble
formation and transport, hydrostatic pressure, and ice growth. Other changes
in the characteristics of bubble patches could be because of evolution of
point sources or changes in point-source conduits (bubble tubes) in the
sediment (Walter et al., 2008; Scandella et al., 2011). Atmospheric
pressure dynamics can also strongly impact bubbling over short timescales,
resulting in different ice-bubble patterns one year from the next if
insufficient time passes to allow all seeps to be expressed in the lake ice
cover. Field measurements have shown that ebullition is inversely related to
changes in hydrostatic pressure (Mattson and Likens, 1990; Varadharajan,
2009; Casper et al., 2000; Glaser et al., 2004; Tokida et al., 2005;
Scandella et al., 2011). A significant air pressure drop during the week
preceding image acquisition in October 2012 may have allowed methane that
previously accumulated in the sediment during high-pressure days to rise up
into the water column, manifesting itself as larger numbers of bubbles (Fig. 7),
and larger and brighter bubble patches in the lake ice (Fig. 6).
Conversely, air pressure change in October 2011 was not large enough to
enhance ebullition before the image was acquired. As a result, bubble patch
density was 55 % higher in 2012 (0.185 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> 2012 compared to 2011
(0.119 m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Similarly, the estimated mean whole-lake ebullition was
24 % higher in 2012 compared to 2011 due to different atmospheric pressure
dynamics. However, the general spatial distribution of bubble patches
remained the same between the two years: ebullition bubble patches were more
concentrated towards the eastern thermokarst lake shore.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F7" specific-use="star"><caption><p><bold>(a)</bold> The graph of mean daily atmospheric pressure (mbar)
observed between 1 and 15 October in 2011 and 2012 shows that the magnitude of
atmospheric pressure drop prior to image acquisition was twice as high in
2012 and 2011; pressure drops are known to induce ebullition. Bubble-patch
density is shown in a 5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5 m grid as seen in the October images of the year
<bold>(b)</bold> 2011 and <bold>(c)</bold> 2012. Generally darker grid cell colors
in panels <bold>(b)</bold> and <bold>(c)</bold> suggest a higher density of seeps in 2012
compared to 2011, which is consistent with (1) a 2-times longer period of
ice formation (4 days in 2012 vs. 2 days in 2011) for bubbles to
accumulate and (2) atmospheric pressure patterns. The spatial distribution of
bubble patches clearly shows a higher concentration of methane emission along
the rapidly expanding eastern thermokarst margin in both years.</p></caption>
          <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f07.jpg"/>

        </fig>

      <p>We rejected the null hypothesis of complete spatial randomness to show that
the difference in spatial patterns of bubble patches and hotspots between
years is not random, i.e., that the locations of seeps in the years 2011 and
2012 are not independent. The Gcross distribution function showed that a
statistically significant number of second-year bubble-patch center points
are less than 2 m away from the first-year center points and that there
are far fewer than expected that are 3 m or more apart (Fig. 8a). For
the hotspots, a statistically significant number of seeps moved less than a
meter (Fig. 8b). Since our image rectification accounted for a geolocation
error of less than 20 cm and DGPS geolocation error is even smaller and
considered negligible, we conclude that the seep locations are consistent
between years 2011 and 2012.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>Cumulative distribution function of distances (<inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>) is shown for between seeps
identified in two different years 2011 and 2012. The black line shows actual
observed data and the red line shows the theoretical expected value assuming
the points are completely random. The gray shaded area shows a theoretical
seep distance function for a random seep distribution (95 % confidence
band). The deviation between the observed empirical value (black curve) and
theoretical expected value (red curve) suggests that a large and
statistically significant number of seeps show spatial dependence between
2011 and 2012. <bold>(a)</bold> Distance function for bubble patches derived from
the image data set. The actual curve is well above the theoretical curve over
separation distances of 0 to 2 m; and thus a statistically significant
number of second-year bubble patch center points are less than 2 m away
from the first-year center points. The actual curve is below the theoretical
curve at the top after 3 m distance separation, suggesting that there are a
far fewer number of seeps at large distances. <bold>(b)</bold> Distance function
for seeps derived from DGPS field-measured hotspots. The observed function
for the DGPS hotspot locations rises almost vertically over separation
distances of 0 to 1 m deviating away from the theoretical function, i.e.,
a statistically significant number of hotspot seeps did not move much from
the first-year location.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/27/2016/bg-13-27-2016-f08.png"/>

        </fig>

      <p>Based on our DGPS data, the number of hotspots was relatively stable among
the various surveys with about 105 hotspots for the whole lake as the
average of various measurements during different years and spring and fall
field seasons (Greene et al., 2014). UAV-based aerial images taken 5 days
after ice formation when snow covered the lake also demonstrated close
agreement with the hotspot seep numbers and locations. We were able to
identify 78 dark open water holes in the white, snow-covered UAV lake image
acquired in early winter of 2012. Among these 78 locations there was a total
of about 95–100 active open-hole hotspot seeps since some
large, irregularly shaped holes consisted of multiple, coalesced holes
produced by hotspot seeps of close proximity (Supplement Fig. S4).</p>
      <p>When we compared the location of bubble patches in 2011 and 2012, we found
that 47.2 % of a total of 1195 ebullition bubble patches mapped in 2011
reappeared in 2012, which is 35.7 % of a total of 1860 ebullition bubble
patches mapped in 2012. We found that 37.5, 30, and 17.7 % of
bubble patches mapped in 2011 reappeared in 2012 with an overlap area of
“more than 25 %”, “more than 50 %”, and “more than 75 % area”,
respectively. We expect that if more time passed between the time of
freeze-up and aerial image acquisition date we would see an even higher
percentage of seep location re-occurrences because more seeps would be
actively expressed.</p>
      <p>We also observed a relationship between bubble-patch brightness and location
stability of bubble patches. Very bright patches in 2012 seemed to appear at
locations where bubble patches were already observed in 2011. This could
indicate locations of high-flux seeps where methane was able to rise through
the sediment even under relatively high hydrostatic pressure conditions that
we observed in October 2011. Based on our bubble patch classification
results (Table 1), we also noticed that seep density of high-flux C- and
hotspot-type seeps is less variable during our study period compared to
low-flux A- and B-type seeps. However, long-term remote sensing and
ground-based observations are required to further test our hypothesis of
seep regularity that high-flux seeps are temporally more stable in their
location than low-flux seeps. Additionally, long-term data may also help to
account for the difference in pressure and look at possible changes in seep
type over the years.</p>
      <p>The regularity of bubble patches observed despite the differences in
atmospheric pressure conditions following the lake freeze-up events in 2011
and 2012 as well as the location stability of hotspots indicates that a
large number of point-source seeps in thermokarst lakes are stable over at
least annual timescales. Walter Anthony et al. (2010) also found seeps to
maintain stable locations in Goldstream Lake when submerged bubble traps were
placed over individual seeps to monitor their ebullition dynamics for
periods of up to 700 days. In Siberia one hotspot seep location was marked
and found stable for at least 8 years (Walter Anthony et al., 2010).</p>
</sec>
</sec>
<sec id="Ch1.S5">
  <title>Benefits and challenges of aerial image analysis for ebullition seep
mapping</title>
      <p>We found numerous significant benefits of using aerial images for
characterizing ebullition seeps on lake ice. Aerial images of early winter
lake ice without snow cover allowed us to map and characterize bubble
patches on the entire lake surface as well as assess their spatial
distribution more accurately. Snow-covered lake ice images allowed us to map
open-hole hotspots. We were able to differentiate high-methane-emitting
seeps from low-methane-emitting seeps on the lake based on PC 1 brightness
values of bubble patches. Image-derived estimates of seep densities by class
agreed with those of field-based survey methods, except for some
overestimation of hotspots and underestimation of A-type seeps. We were able
to differentiate lake areas with high seep densities versus low seep
densities; having this ability is especially useful for quantifying methane
ebullition on larger lakes that are harder to survey extensively by foot.</p>
      <p>Our results also imply a potential to apply high-resolution optical images
at a regional scale to quantify relative methane flux from many lakes, which
at a minimum should allow for the classification of high-ebullition versus
low-ebullition lakes and their distribution in a region. It is important to
note that while image analysis is useful to comprehensive mapping of
lake ice bubbles, for the estimation of whole-lake methane emissions, this
technique should be coupled with bubble-trap field measurements and
laboratory measurements of methane concentration in bubbles.</p>
      <p>But because ebullition is a temporally dynamic phenomenon, our ability to
accurately identify the distinct seep type of bubble patches on a snapshot
of ebullition activity during only 2 and 4 days since lake ice formation is
limited. The morphology and distribution of bubbles can undergo significant
changes in response to freeze/thaw cycles during winter (Jeffries et al.,
2005). Furthermore, ebullition is highly controlled by the balance between
atmospheric pressure and sediment strength, making it an episodic phenomenon
(Varadharajan, 2009; Scandella et al., 2011). Ebullition is triggered
following the fall of hydrostatic pressure or after a sufficient volume
of gas is produced in the sediment that allows bubble tubes or gas
conduits in lake sediments to open or dilate (Scandella et al., 2011).
Bubbles previously trapped in lake sediment then break out through these
open bubble tubes and rise up in the water column. Moreover, microbial
activity of methane-producing bacteria is temperature-dependent. As a
result, seep ebullition slows down when the lake surface sediments cool down
in winter and it increases as lake sediment warms up in summer (Walter
Anthony and Anthony, 2010). Therefore, discrepancies arise in estimates of
the number of seeps and seep morphology derived from observations made at
different times of the ice cover season (Wik et al., 2011). Ideally, optical
image acquisition would occur at least several weeks following freeze-up of
lakes to allow more time for seep expression in lake ice. Unfortunately,
snow-free conditions several weeks after freeze-up is rare in many regions
of the Arctic; and early snow cover inhibits the mapping of bubble patches
with optical data.</p>
      <p>SAR data have an advantage over optical remote sensing data in detecting
methane bubbles trapped in lake ice under snow cover conditions (Walter et
al., 2008; Engram et al., 2012). Engram et al. (2012) showed that
particularly L-band SAR data acquired in the fall have the potential to
estimate whole-lake methane ebullition since a longer-wavelength L-band is
able to detect bubbles under other conditions such as the presence of snow, a thin
layer of white ice, and aquatic vegetation. However, the moderate spatial
resolution of current L-band SAR systems can be a limiting factor to estimate
methane emission from small lakes and to capture delicate spatial patterns
of ebullition seeps on lakes. SAR lake images further tend to have false
backscatter signals from the lake shore (Walter et al., 2008; Engram et al.,
2012), therefore limiting its usability in proximity to shores (about 1
pixel around lake shores is excluded in SAR analyses) where we showed an
important component of ebullition may take place on eroding thermokarst
margins. Thus, high-resolution optical images can supplement SAR-based
studies by revealing the location of methane ebullition seeps and their
types on the lake more precisely. Our study shows that optical
high-resolution remote sensing methods have the potential, given the caveats
raised above, to improve understanding of spatial and temporal variability
of ebullition and therefore the dynamics of microbial processing of organic
matter within an individual lake.</p>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <title>Conclusions</title>
      <p>It is important to understand the dynamics of methane ebullition from
thermokarst lakes to estimate the amount of carbon release from thawing
permafrost and to evaluate its feedback to the global carbon cycle. Our study
focusing on Goldstream Lake, Interior Alaska, shows that high-resolution
optical remote sensing is a promising tool to map the distribution of point-source
methane ebullition seeps across an entire thermokarst lake surface, a
task that is difficult to achieve through field-based surveys alone. This
method helps to reveal the location and relative sizes of high- and
low-flux seepage zones within lakes. We also demonstrated that a large
proportion of ebullition seeps in the study lake were location-stable over
at least two winter seasons in the 2011–2012 observation period. Such
observations may be used to indirectly characterize permafrost carbon
mobilization in a lake since lake portions with greater numbers of high-flux
seeps likely indicate either the presence of rapidly thawing organic-rich
permafrost deposits or eroding lake margins. Our approach is also applicable
to other regions and will help to characterize methane ebullition emissions
from seasonally ice-covered lakes, including thermokarst and non-thermokarst
lakes in tundra and boreal zones. It will help to differentiate lakes in a
region based on methane emission by estimating ebullition seep density, and
their relative methane flux. This differentiation could potentially be used
to identify presence or absence of organic-rich permafrost deposits such as
yedoma in the area. For example, yedoma-type thermokarst lakes, such as
Goldstream Lake, where large amounts of labile carbon is readily available for
microbes to decompose, emit more methane than non-yedoma-type thermokarst
lakes. This can be a useful supplement to surveying soil carbon pools and
yedoma distribution at a regional scale. Multi-temporal spatial information
derived from remotely sensed optical data allows the identification of variables
that control methane ebullition dynamics and spatial patterns. However, the
timing of optical image acquisitions is a critical and a potentially
limiting factor, with respect to both atmospheric pressure changes and
snow/no-snow conditions during early lake freeze-up. Therefore,
high-resolution remotely sensed optical images in combination with SAR and
field data could be a very valuable tool to improve the estimation of
methane emission from lakes at the regional scale.</p>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-13-27-2016-supplement" xlink:title="pdf">doi:10.5194/bg-13-27-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p>G. Grosse and K. M. Walter Anthony conceived this study. P. R. Lindgren
developed the method, performed data analysis, and wrote the manuscript with
significant input from all co-authors. P. R. Lindgren, G. Grosse, and K. M. Walter Anthony
were responsible for the field work.</p>
  </notes><ack><title>Acknowledgements</title><p>We thank A. Bondurant for harvesting ice blocks; P. Anthony for statistical
coding; and A. Strohm, M. Engram, and J. Lenz for assistance with other fieldwork.
We thank J. Cherry for aerial image acquisitions and B. Crevensten and
G. Walker for UAV image acquisitions. This research was funded by NASA Carbon
Cycle Science, grant no. NNX11AH20G. Additional support came from NSF no. 1107892.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: I. Laurion</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>Baddeley, A. and Turner, R.: Spatstat: An R package for analyzing spatial
point patterns, J. Stat. Softw., 12, 1–42,  <uri>www.jstatsoft.org</uri> (last access: August 2014),
ISSN: 1548–7660, 2005.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>Bastviken, D.: Methane emissions from lakes: Dependence of lake
characteristics, two regional assessments, and a global estimate, Global
Biogeochem. Cy., 18, 1–12, <ext-link xlink:href="http://dx.doi.org/10.1029/2004GB002238" ext-link-type="DOI">10.1029/2004GB002238</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>Bastviken, D., Tranvik, L. J., Downing, J. A., Crill, P. M., and
Enrich-Prast, A.: Freshwater methane emissions offset the continental carbon
sink, Science, 331, 6013, <ext-link xlink:href="http://dx.doi.org/10.1126/science.1196808" ext-link-type="DOI">10.1126/science.1196808</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>
Bivand, R. S., Pembesma, E. J., and Gomez-Rubio, V.: Applied Spatial Data
Analysis with R, Springer, New York, 2008.</mixed-citation></ref>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>
Blaschke, T. and Strobl, J.: What's wrong with pixels? Some recent
developments interfacing remote sensing and GIS, GIS – Zeitschrift für
Geoinformationssysteme, 14, 12–17, 2001.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>
Blaschke, T., Lang, S., and Hay, G. J.: Object based image analysis: Spatial
concepts for knowledge-driven remote sensing applications, Springer-Verlag
Berlin, Heidelberg, Germany, 2008.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>Brosius, L. S., Walter Anthony, K. M., Grosse, G., Chanton, J. P.,
Farquharson, L. M., Overduin, P. P., and Meyer, H.: Using the deuterium
isotope composition of permafrost meltwater to constrain thermokarst lake
contributions to atmospheric CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> during the last deglaciation, J.
Geophys. Res., 117, G01022, <ext-link xlink:href="http://dx.doi.org/10.1029/2011JG001810" ext-link-type="DOI">10.1029/2011JG001810</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>
Casper, P., Maberly, S. C., Hall, G. H., and Finlay, B. J.: Fluxes of
methane and carbon dioxide from a small productive lake to the atmosphere,
Biogeochemistry, 49, 1–19, 2000.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>
Definiens: Segmentation Algorithms In Definiens Developer 7 Reference Book,
Document Version 7.0.0.843, 15–27, Definiens AG, München, Germany,
2007.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>
Engram, M., Walter Anthony, K. M., Meyer, F. J., and Grosse, G.: Synthetic
aperture radar (SAR) backscatter response from methane ebullition bubbles
trapped by thermokarst lake ice, Can. J. Remote Sens., 38, 667–682, 2012.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>
Fechner-Levy, E. J. and Hemond, H. F.: Trapped methane volume and potential
effects on methane ebullition in a northern peatland, Limnol. Oceanogr., 41,
1375–1383, 1996.</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>Glaser, P. H., Chanton, J. P., Morin, P., Rosenberry, D. O., Siegel, D. I.,
Ruud, O., Chasar, L. I., and Reeve, A. S.: Surface deformations as indicators
of deep ebullition fluxes in a large northern peatland, Global Biogeochem.
Cy., 18, GB1003, <ext-link xlink:href="http://dx.doi.org/10.1029/2003GB002069" ext-link-type="DOI">10.1029/2003GB002069</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>Greene, S., Walter Anthony, K. M., Archer, D., Sepulveda-Jauregui, A., and
Martinez-Cruz, K.: Modeling the impediment of methane ebullition bubbles by
seasonal lake ice, Biogeosciences, 11, 6791-6811,
<ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-6791-2014" ext-link-type="DOI">10.5194/bg-11-6791-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>Grosse, G., Harden, J., Turetsky, M., McGuire, A. D., Camill, P., Tarnocai,
C., Frolking, S., Schuur, E. A. G., Jorgenson, T., Marchenko, S., Romanovsky,
V., Wickland, K. P., French, N., Waldrop, M., Bourgeau-Chavez, L., and
Striegl, R. G.: Vulnerability of high-latitude soil organic carbon in North
America to disturbance, J. Geophys. Res., 116, 1–23,
<ext-link xlink:href="http://dx.doi.org/10.1029/2010JG001507" ext-link-type="DOI">10.1029/2010JG001507</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>
Grosse, G., Jones, B., and Arp, C.: Thermokarst Lakes, Drainage and Drained
Basins, Treatise Geomorphol., 8, 325–353, 2013.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>Hinzman, L. D., Bettez, N. D., Bolton, W. R., Chapin, F. S., Dyurgerov, M.
B., Fastie, C. L., Griffith, B., Hollister, R. D., Hope, A., Huntington, H.
P., Jensen, A. M., Jia, G. J., Jorgenson, T., Kane, D. L., Klein, D. R.,
Kofinas, G., Lynch, A. H., Lloyd, A. H., Mcguire, A. D., Nelson, F. E.,
Oechel, W. C., Osterkamp, T. E., Racine, C. H., Romanovsky, V. E., Stone, R.
S., Stow, D. A., Sturm, M., Tweedie, C. E., Vourlitis, G. L., Walker, M. D.,
Walker, D. A., Webber, P. J., Welker, J. M., and Winker, K. S.: Evidence and
Implications of Recent Climate Change in Northern Alaska and Other Arctic
Regions, Climatic Change, 72, 251–298, <ext-link xlink:href="http://dx.doi.org/10.1007/s10584-005-5352-2" ext-link-type="DOI">10.1007/s10584-005-5352-2</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bib17"><label>17</label><mixed-citation>Hugelius, G., Strauss, J., Zubrzycki, S., Harden, J. W., Schuur, E. A. G.,
Ping, C.-L., Schirrmeister, L., Grosse, G., Michaelson, G. J., Koven, C. D.,
O'Donnell, J. A., Elberling, B., Mishra, U., Camill, P., Yu, Z., Palmtag, J.,
and Kuhry, P.: Estimated stocks of circumpolar permafrost carbon with
quantified uncertainty ranges and identified data gaps, Biogeosciences, 11,
6573-6593, <ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-6573-2014" ext-link-type="DOI">10.5194/bg-11-6573-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib18"><label>18</label><mixed-citation>
Jeffries, M. O., Morris, K., and Kozlenko, N.: Ice Characteristics and Remote
Sensing of Frozen Rivers and Lakes, Remote Sensing in Northern Hydrology,
Geoph. Monog. Series, 163, 63–90, 2005.</mixed-citation></ref>
      <ref id="bib1.bib19"><label>19</label><mixed-citation>Jorgenson, M. T. and Shur, Y.: Evolution of lakes and basins in northern
Alaska and discussion of the thaw lake cycle, J. Geophys. Res., 112, 1–12,
<ext-link xlink:href="http://dx.doi.org/10.1029/2006JF000531" ext-link-type="DOI">10.1029/2006JF000531</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bib20"><label>20</label><mixed-citation>Kanevskiy, M., Shur, Y., Fortier, D., Jorgenson, M. T., and Stephani, E.:
Cryostratigraphy of late Pleistocene syngenetic permafrost (yedoma) in
northern Alaska, Itkillik River exposure, Quaternary Res., 75, 584–596,
<ext-link xlink:href="http://dx.doi.org/10.1016/j.yqres.2010.12.003" ext-link-type="DOI">10.1016/j.yqres.2010.12.003</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib21"><label>21</label><mixed-citation>Keller, M. and Stallard, R. F.: Methane emission by bubbling from Gatun
Lake, Panama, J. Geophys. Res., 99, 8307–8319, <ext-link xlink:href="http://dx.doi.org/10.1029/92JD02170" ext-link-type="DOI">10.1029/92JD02170</ext-link>, 1994.</mixed-citation></ref>
      <ref id="bib1.bib22"><label>22</label><mixed-citation>Kessler, M. A., Plug, L. J., and Walter Anthony, K. M.: Simulating the
decadal- to millennial-scale dynamics of morphology and sequestered carbon
mobilization of two thermokarst lakes in NW Alaska, J. Geophys. Res.-Biogeo.,
117, 1–22, <ext-link xlink:href="http://dx.doi.org/10.1029/2011JG001796" ext-link-type="DOI">10.1029/2011JG001796</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib23"><label>23</label><mixed-citation>Kokelj, S. V. and Jorgenson, M. T.: Advances in thermokarst research,
Permafrost Periglac., 24, 108–119, <ext-link xlink:href="http://dx.doi.org/10.1002/ppp.1779" ext-link-type="DOI">10.1002/ppp.1779</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib24"><label>24</label><mixed-citation>Koven, C. D., Ringeval, B., Friedlingstein, P., Ciais, P., Cadule, P.,
Khvorostyanov, D., Krinner, G., and Tarnocai, C.: Permafrost carbon-climate
feedbacks accelerate global warming, P. Natl. Acad. Sci. USA, 108,
14769–14774, <ext-link xlink:href="http://dx.doi.org/10.1073/pnas.1103910108" ext-link-type="DOI">10.1073/pnas.1103910108</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib25"><label>25</label><mixed-citation>
Lindgren, P. R., Grosse, G., Meyer, F. J., and  Walter Anthony, K. M.:
Development of an object-based classification model to detect methane
ebullition bubbles in early winter lake ice, in preparation, 2015.</mixed-citation></ref>
      <ref id="bib1.bib26"><label>26</label><mixed-citation>
Mather, P.: Pattern Recognition Principles In Classification for Remotely
Sensed Data, Second Edn., CRC Press, New York, 41–75, 2009.</mixed-citation></ref>
      <ref id="bib1.bib27"><label>27</label><mixed-citation>
Mattson, M. D. and Likens, G. E.: Air pressure and methane fluxes, Nature,
347, 718–719, 1990.</mixed-citation></ref>
      <ref id="bib1.bib28"><label>28</label><mixed-citation>
Navulur, K.: Multispectral image analysis using the object-oriented
paradigm, CRC Press, Boca Raton, FL, 2007.</mixed-citation></ref>
      <ref id="bib1.bib29"><label>29</label><mixed-citation>
Péwé, T. L.: Quaternary geology of Alaska, US Geol. Survey
Professional Paper 835,  1–145, 1975.</mixed-citation></ref>
      <ref id="bib1.bib30"><label>30</label><mixed-citation>Plug, L. J. and West, J. J.: Thaw lake expansion in a two-dimensional coupled
model of heat transfer, thaw subsidence, and mass movement, J. Geophys. Res.,
114, F01002, <ext-link xlink:href="http://dx.doi.org/10.1029/2006JF000740" ext-link-type="DOI">10.1029/2006JF000740</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bib31"><label>31</label><mixed-citation>Rowland, J. C., Travis, B. J., and Wilson, C. J.: The role of advective heat
transport in talik development beneath lakes and ponds in discontinuous
permafrost, Geophys. Res. Lett., 38, 1–5, <ext-link xlink:href="http://dx.doi.org/10.1029/2011GL048497" ext-link-type="DOI">10.1029/2011GL048497</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib32"><label>32</label><mixed-citation>Scandella, B. P., Varadharajan, C., Hemond, H. F., Ruppel, C., and Juanes,
R.: A conduit dilation model of methane venting from lake sediments, Geophys.
Res. Lett., 38, 1–6, <ext-link xlink:href="http://dx.doi.org/10.1029/2011GL046768" ext-link-type="DOI">10.1029/2011GL046768</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib33"><label>33</label><mixed-citation>Schuur, E. A. G., Bockenheim, J., Canadell, J. P., Euskirchen, E., Field, C.
B., Goryachkin, S. V., Hagemann, S., Kuhry, P., Lafleur, P. M., Lee, H.,
Mazhitova, G., Nelson, F. E., Rinke, A., Romanovsky, V. E., Shiklomanov, N.,
Tarnocai, C., Venevsky, S., Vogel, J. G., and Zimov, S. A.: Vulnerability of
permafrost carbon to climate change: implications for the global carbon
cycle, BioScience, 58, 701–714, <ext-link xlink:href="http://dx.doi.org/10.1641/B580807" ext-link-type="DOI">10.1641/B580807</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bib34"><label>34</label><mixed-citation>
Smith, L. C., Sheng, Y., and MacDonald, G. M.: A first pan-Arctic assessment
of the influence of glaciation, permafrost, topography and peatlands on
northern hemisphere lake distribution, Permafrost Periglac., 18, 201–208,
2007.</mixed-citation></ref>
      <ref id="bib1.bib35"><label>35</label><mixed-citation>Tokida, T., Miyazaki, T., and Mizoguchi, M.: Ebullition of methane from peat
with falling atmospheric pressure, Geophys. Res. Lett., 32, L13823
<ext-link xlink:href="http://dx.doi.org/10.1029/2005GL022949" ext-link-type="DOI">10.1029/2005GL022949</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bib36"><label>36</label><mixed-citation>
Varadharajan, C.: Magnitude and spatio-temporal variability of methane
emissions from a eutrophic freshwater lake, PhD thesis, Massachusetts
Institute of Technology, Cambridge, MA, 2009.</mixed-citation></ref>
      <ref id="bib1.bib37"><label>37</label><mixed-citation>Walter, K. M., Zimov, S. A., Chanton, J. P., Verbyla, D., and Chapin, F. S.:
Methane bubbling from Siberian thaw lakes as a positive feedback to climate
warming, Nature, 443, 71–75, <ext-link xlink:href="http://dx.doi.org/10.1038/nature05040" ext-link-type="DOI">10.1038/nature05040</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bib38"><label>38</label><mixed-citation>Walter, K. M., Smith, L. C., and Chapin, F. S.: Methane bubbling from
northern lakes: present and future contributions to the global methane
budget, Philos. T. R. Soc. A, 365, 1657–1676, <ext-link xlink:href="http://dx.doi.org/10.1098/rsta.2007.2036" ext-link-type="DOI">10.1098/rsta.2007.2036</ext-link>,
2007.</mixed-citation></ref>
      <ref id="bib1.bib39"><label>39</label><mixed-citation>Walter, K. M., Engram, M., Duguay, C. R., Jeffries, M. O., and Chapin, F. S.:
The potential use of Synthetic Aperture Radar for estimating methane
ebullition from Arctic lakes, J. Am. Water Resour. As., 44, 305–315, 2008.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib40"><label>40</label><mixed-citation>
Walter Anthony, K., Vas, D. A., Brosius, L., Chapin III, F. S., and Zimov, S.
A.: Estimating methane emissions from northern lakes using ice- bubble
surveys, Limnol. Oceanogr.-Meth., 8, 592–609, 2010.</mixed-citation></ref>
      <ref id="bib1.bib41"><label>41</label><mixed-citation>Walter Anthony, K. M. and Anthony, P.: Constraining spatial variability of
methane ebullition seeps in thermokarst lakes using point process models, J.
Geophys. Res.-Biogeo., 118, 1–20, <ext-link xlink:href="http://dx.doi.org/10.1002/jgrg.20087" ext-link-type="DOI">10.1002/jgrg.20087</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib42"><label>42</label><mixed-citation>Walter Anthony, K. M., Anthony, P., Grosse, G., and Chanton, J.: Geologic
methane seeps along boundaries of Arctic permafrost thaw and melting
glaciers, Nat. Geosci., 5, 419–426, <ext-link xlink:href="http://dx.doi.org/10.1038/ngeo1480" ext-link-type="DOI">10.1038/ngeo1480</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib43"><label>43</label><mixed-citation>Walter Anthony, K. M., Zimov, S. A., Grosse, G., Jones, M. C., Anthony, P.,
Chapin III, F. S., Finlay, J. C., Mack, M. C., Davydov, S., Frenzel, P., and
Frolking, S.: A shift of thermokarst lakes from carbon sources to sinks
during the Holocene epoch, Nature, 511, 452–456, <ext-link xlink:href="http://dx.doi.org/10.1038/nature13560" ext-link-type="DOI">10.1038/nature13560</ext-link>,
2014.</mixed-citation></ref>
      <ref id="bib1.bib44"><label>44</label><mixed-citation>West, J. J. and Plug, L. J.: Time-dependent morphology of thaw lakes and
taliks in deep and shallow ground ice, J. Geophys. Res., 113, 1–14,
<ext-link xlink:href="http://dx.doi.org/10.1029/2006JF000696" ext-link-type="DOI">10.1029/2006JF000696</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bib45"><label>45</label><mixed-citation>Wik, M., Crill, P. M., Bastvikenm D., Danielsson, Å., and Norbäck,
E.: Bubbles trapped in arctic lake ice: Potential implications for methane
emissions, J. Geophys. Res., 116, 1–10, <ext-link xlink:href="http://dx.doi.org/10.1029/2011JG001761" ext-link-type="DOI">10.1029/2011JG001761</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bib46"><label>46</label><mixed-citation>Zimov, S. A., Voropaev, Y. V., Semiletov, I. P., Davidov, S. P.,
Prosiannikov, S. F., Chapin III, F. S., Chapin, M. C., Trumbore, S., and
Tyler, S.: North Siberian Lakes: A methane source fueled by Pleistocene
carbon, Science, 277, 800–802, <ext-link xlink:href="http://dx.doi.org/10.1126/science.277.5327.800" ext-link-type="DOI">10.1126/science.277.5327.800</ext-link>, 1997.</mixed-citation></ref>
      <ref id="bib1.bib47"><label>47</label><mixed-citation>Zimov, S. A., Davydov, S. P., Zimova, G. M., Davydova, A. I., Schuur, E. A.
G., Dutta, K., and Chapin III, F. S.: Permafrost carbon: Stock and
decomposability of a globally significant carbon pool, Geophys. Res. Lett.,
33, , 1–5, <ext-link xlink:href="http://dx.doi.org/10.1029/2006GL027484" ext-link-type="DOI">10.1029/2006GL027484</ext-link>, 2006.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Detection and spatiotemporal analysis of methane ebullition on thermokarst
lake ice using high-resolution  optical aerial imagery</article-title-html>
<abstract-html><p class="p">Thermokarst lakes are important emitters of methane, a potent greenhouse
gas. However, accurate estimation of methane flux from thermokarst lakes is
difficult due to their remoteness and observational challenges associated
with the heterogeneous nature of ebullition. We used high-resolution (9–11 cm)
snow-free aerial images of an interior Alaskan thermokarst lake acquired
2 and 4 days following freeze-up in 2011 and 2012, respectively, to detect
and characterize methane ebullition seeps and to estimate whole-lake
ebullition. Bubbles impeded by the lake ice sheet form distinct white
patches as a function of bubbling when lake ice grows downward and around
them, trapping the gas in the ice. Our aerial imagery thus captured a
snapshot of bubbles trapped in lake ice during the ebullition events that
occurred before the image acquisition. Image analysis showed that low-flux
A- and B-type seeps are associated with low brightness patches and are
statistically distinct from high-flux C-type and hotspot seeps associated
with high brightness patches. Mean whole-lake ebullition based on optical
image analysis in combination with bubble-trap flux measurements was
estimated to be 174 ± 28 and 216 ± 33 mL gas m<Superscript>−2</Superscript> d<Superscript>−1</Superscript> for the years 2011 and 2012, respectively. A large
number of seeps demonstrated spatiotemporal stability over our 2-year
study period. A strong inverse exponential relationship (<Emphasis Type="Italic">R</Emphasis><Superscript>2</Superscript> &gt;  =  0.79)
was found between the percent of the surface area of lake ice
covered with bubble patches and distance from the active thermokarst lake
margin. Even though the narrow timing of optical image acquisition is a
critical factor, with respect to both atmospheric pressure changes and
snow/no-snow conditions during early lake freeze-up, our study shows that
optical remote sensing is a powerful tool to map ebullition seeps on lake
ice, to identify their relative strength of ebullition, and to assess their
spatiotemporal variability.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Baddeley, A. and Turner, R.: Spatstat: An R package for analyzing spatial
point patterns, J. Stat. Softw., 12, 1–42,  <a href="www.jstatsoft.org" target="_blank">doi:www.jstatsoft.org</a> (last access: August 2014),
ISSN: 1548–7660, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Bastviken, D.: Methane emissions from lakes: Dependence of lake
characteristics, two regional assessments, and a global estimate, Global
Biogeochem. Cy., 18, 1–12, <a href="http://dx.doi.org/10.1029/2004GB002238" target="_blank">doi:10.1029/2004GB002238</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Bastviken, D., Tranvik, L. J., Downing, J. A., Crill, P. M., and
Enrich-Prast, A.: Freshwater methane emissions offset the continental carbon
sink, Science, 331, 6013, <a href="http://dx.doi.org/10.1126/science.1196808" target="_blank">doi:10.1126/science.1196808</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Bivand, R. S., Pembesma, E. J., and Gomez-Rubio, V.: Applied Spatial Data
Analysis with R, Springer, New York, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Blaschke, T. and Strobl, J.: What's wrong with pixels? Some recent
developments interfacing remote sensing and GIS, GIS – Zeitschrift für
Geoinformationssysteme, 14, 12–17, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
Blaschke, T., Lang, S., and Hay, G. J.: Object based image analysis: Spatial
concepts for knowledge-driven remote sensing applications, Springer-Verlag
Berlin, Heidelberg, Germany, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
Brosius, L. S., Walter Anthony, K. M., Grosse, G., Chanton, J. P.,
Farquharson, L. M., Overduin, P. P., and Meyer, H.: Using the deuterium
isotope composition of permafrost meltwater to constrain thermokarst lake
contributions to atmospheric CH<Subscript>4</Subscript> during the last deglaciation, J.
Geophys. Res., 117, G01022, <a href="http://dx.doi.org/10.1029/2011JG001810" target="_blank">doi:10.1029/2011JG001810</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
Casper, P., Maberly, S. C., Hall, G. H., and Finlay, B. J.: Fluxes of
methane and carbon dioxide from a small productive lake to the atmosphere,
Biogeochemistry, 49, 1–19, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Definiens: Segmentation Algorithms In Definiens Developer 7 Reference Book,
Document Version 7.0.0.843, 15–27, Definiens AG, München, Germany,
2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Engram, M., Walter Anthony, K. M., Meyer, F. J., and Grosse, G.: Synthetic
aperture radar (SAR) backscatter response from methane ebullition bubbles
trapped by thermokarst lake ice, Can. J. Remote Sens., 38, 667–682, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Fechner-Levy, E. J. and Hemond, H. F.: Trapped methane volume and potential
effects on methane ebullition in a northern peatland, Limnol. Oceanogr., 41,
1375–1383, 1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Glaser, P. H., Chanton, J. P., Morin, P., Rosenberry, D. O., Siegel, D. I.,
Ruud, O., Chasar, L. I., and Reeve, A. S.: Surface deformations as indicators
of deep ebullition fluxes in a large northern peatland, Global Biogeochem.
Cy., 18, GB1003, <a href="http://dx.doi.org/10.1029/2003GB002069" target="_blank">doi:10.1029/2003GB002069</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Greene, S., Walter Anthony, K. M., Archer, D., Sepulveda-Jauregui, A., and
Martinez-Cruz, K.: Modeling the impediment of methane ebullition bubbles by
seasonal lake ice, Biogeosciences, 11, 6791-6811,
<a href="http://dx.doi.org/10.5194/bg-11-6791-2014" target="_blank">doi:10.5194/bg-11-6791-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Grosse, G., Harden, J., Turetsky, M., McGuire, A. D., Camill, P., Tarnocai,
C., Frolking, S., Schuur, E. A. G., Jorgenson, T., Marchenko, S., Romanovsky,
V., Wickland, K. P., French, N., Waldrop, M., Bourgeau-Chavez, L., and
Striegl, R. G.: Vulnerability of high-latitude soil organic carbon in North
America to disturbance, J. Geophys. Res., 116, 1–23,
<a href="http://dx.doi.org/10.1029/2010JG001507" target="_blank">doi:10.1029/2010JG001507</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
Grosse, G., Jones, B., and Arp, C.: Thermokarst Lakes, Drainage and Drained
Basins, Treatise Geomorphol., 8, 325–353, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Hinzman, L. D., Bettez, N. D., Bolton, W. R., Chapin, F. S., Dyurgerov, M.
B., Fastie, C. L., Griffith, B., Hollister, R. D., Hope, A., Huntington, H.
P., Jensen, A. M., Jia, G. J., Jorgenson, T., Kane, D. L., Klein, D. R.,
Kofinas, G., Lynch, A. H., Lloyd, A. H., Mcguire, A. D., Nelson, F. E.,
Oechel, W. C., Osterkamp, T. E., Racine, C. H., Romanovsky, V. E., Stone, R.
S., Stow, D. A., Sturm, M., Tweedie, C. E., Vourlitis, G. L., Walker, M. D.,
Walker, D. A., Webber, P. J., Welker, J. M., and Winker, K. S.: Evidence and
Implications of Recent Climate Change in Northern Alaska and Other Arctic
Regions, Climatic Change, 72, 251–298, <a href="http://dx.doi.org/10.1007/s10584-005-5352-2" target="_blank">doi:10.1007/s10584-005-5352-2</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>17</label><mixed-citation>
Hugelius, G., Strauss, J., Zubrzycki, S., Harden, J. W., Schuur, E. A. G.,
Ping, C.-L., Schirrmeister, L., Grosse, G., Michaelson, G. J., Koven, C. D.,
O'Donnell, J. A., Elberling, B., Mishra, U., Camill, P., Yu, Z., Palmtag, J.,
and Kuhry, P.: Estimated stocks of circumpolar permafrost carbon with
quantified uncertainty ranges and identified data gaps, Biogeosciences, 11,
6573-6593, <a href="http://dx.doi.org/10.5194/bg-11-6573-2014" target="_blank">doi:10.5194/bg-11-6573-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>18</label><mixed-citation>
Jeffries, M. O., Morris, K., and Kozlenko, N.: Ice Characteristics and Remote
Sensing of Frozen Rivers and Lakes, Remote Sensing in Northern Hydrology,
Geoph. Monog. Series, 163, 63–90, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>19</label><mixed-citation>
Jorgenson, M. T. and Shur, Y.: Evolution of lakes and basins in northern
Alaska and discussion of the thaw lake cycle, J. Geophys. Res., 112, 1–12,
<a href="http://dx.doi.org/10.1029/2006JF000531" target="_blank">doi:10.1029/2006JF000531</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>20</label><mixed-citation>
Kanevskiy, M., Shur, Y., Fortier, D., Jorgenson, M. T., and Stephani, E.:
Cryostratigraphy of late Pleistocene syngenetic permafrost (yedoma) in
northern Alaska, Itkillik River exposure, Quaternary Res., 75, 584–596,
<a href="http://dx.doi.org/10.1016/j.yqres.2010.12.003" target="_blank">doi:10.1016/j.yqres.2010.12.003</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>21</label><mixed-citation>
Keller, M. and Stallard, R. F.: Methane emission by bubbling from Gatun
Lake, Panama, J. Geophys. Res., 99, 8307–8319, <a href="http://dx.doi.org/10.1029/92JD02170" target="_blank">doi:10.1029/92JD02170</a>, 1994.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>22</label><mixed-citation>
Kessler, M. A., Plug, L. J., and Walter Anthony, K. M.: Simulating the
decadal- to millennial-scale dynamics of morphology and sequestered carbon
mobilization of two thermokarst lakes in NW Alaska, J. Geophys. Res.-Biogeo.,
117, 1–22, <a href="http://dx.doi.org/10.1029/2011JG001796" target="_blank">doi:10.1029/2011JG001796</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>23</label><mixed-citation>
Kokelj, S. V. and Jorgenson, M. T.: Advances in thermokarst research,
Permafrost Periglac., 24, 108–119, <a href="http://dx.doi.org/10.1002/ppp.1779" target="_blank">doi:10.1002/ppp.1779</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>24</label><mixed-citation>
Koven, C. D., Ringeval, B., Friedlingstein, P., Ciais, P., Cadule, P.,
Khvorostyanov, D., Krinner, G., and Tarnocai, C.: Permafrost carbon-climate
feedbacks accelerate global warming, P. Natl. Acad. Sci. USA, 108,
14769–14774, <a href="http://dx.doi.org/10.1073/pnas.1103910108" target="_blank">doi:10.1073/pnas.1103910108</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>25</label><mixed-citation>
Lindgren, P. R., Grosse, G., Meyer, F. J., and  Walter Anthony, K. M.:
Development of an object-based classification model to detect methane
ebullition bubbles in early winter lake ice, in preparation, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>26</label><mixed-citation>
Mather, P.: Pattern Recognition Principles In Classification for Remotely
Sensed Data, Second Edn., CRC Press, New York, 41–75, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>27</label><mixed-citation>
Mattson, M. D. and Likens, G. E.: Air pressure and methane fluxes, Nature,
347, 718–719, 1990.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>28</label><mixed-citation>
Navulur, K.: Multispectral image analysis using the object-oriented
paradigm, CRC Press, Boca Raton, FL, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>29</label><mixed-citation>
Péwé, T. L.: Quaternary geology of Alaska, US Geol. Survey
Professional Paper 835,  1–145, 1975.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>30</label><mixed-citation>
Plug, L. J. and West, J. J.: Thaw lake expansion in a two-dimensional coupled
model of heat transfer, thaw subsidence, and mass movement, J. Geophys. Res.,
114, F01002, <a href="http://dx.doi.org/10.1029/2006JF000740" target="_blank">doi:10.1029/2006JF000740</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>31</label><mixed-citation>
Rowland, J. C., Travis, B. J., and Wilson, C. J.: The role of advective heat
transport in talik development beneath lakes and ponds in discontinuous
permafrost, Geophys. Res. Lett., 38, 1–5, <a href="http://dx.doi.org/10.1029/2011GL048497" target="_blank">doi:10.1029/2011GL048497</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>32</label><mixed-citation>
Scandella, B. P., Varadharajan, C., Hemond, H. F., Ruppel, C., and Juanes,
R.: A conduit dilation model of methane venting from lake sediments, Geophys.
Res. Lett., 38, 1–6, <a href="http://dx.doi.org/10.1029/2011GL046768" target="_blank">doi:10.1029/2011GL046768</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>33</label><mixed-citation>
Schuur, E. A. G., Bockenheim, J., Canadell, J. P., Euskirchen, E., Field, C.
B., Goryachkin, S. V., Hagemann, S., Kuhry, P., Lafleur, P. M., Lee, H.,
Mazhitova, G., Nelson, F. E., Rinke, A., Romanovsky, V. E., Shiklomanov, N.,
Tarnocai, C., Venevsky, S., Vogel, J. G., and Zimov, S. A.: Vulnerability of
permafrost carbon to climate change: implications for the global carbon
cycle, BioScience, 58, 701–714, <a href="http://dx.doi.org/10.1641/B580807" target="_blank">doi:10.1641/B580807</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>34</label><mixed-citation>
Smith, L. C., Sheng, Y., and MacDonald, G. M.: A first pan-Arctic assessment
of the influence of glaciation, permafrost, topography and peatlands on
northern hemisphere lake distribution, Permafrost Periglac., 18, 201–208,
2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>35</label><mixed-citation>
Tokida, T., Miyazaki, T., and Mizoguchi, M.: Ebullition of methane from peat
with falling atmospheric pressure, Geophys. Res. Lett., 32, L13823
<a href="http://dx.doi.org/10.1029/2005GL022949" target="_blank">doi:10.1029/2005GL022949</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>36</label><mixed-citation>
Varadharajan, C.: Magnitude and spatio-temporal variability of methane
emissions from a eutrophic freshwater lake, PhD thesis, Massachusetts
Institute of Technology, Cambridge, MA, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>37</label><mixed-citation>
Walter, K. M., Zimov, S. A., Chanton, J. P., Verbyla, D., and Chapin, F. S.:
Methane bubbling from Siberian thaw lakes as a positive feedback to climate
warming, Nature, 443, 71–75, <a href="http://dx.doi.org/10.1038/nature05040" target="_blank">doi:10.1038/nature05040</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>38</label><mixed-citation>
Walter, K. M., Smith, L. C., and Chapin, F. S.: Methane bubbling from
northern lakes: present and future contributions to the global methane
budget, Philos. T. R. Soc. A, 365, 1657–1676, <a href="http://dx.doi.org/10.1098/rsta.2007.2036" target="_blank">doi:10.1098/rsta.2007.2036</a>,
2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>39</label><mixed-citation>
Walter, K. M., Engram, M., Duguay, C. R., Jeffries, M. O., and Chapin, F. S.:
The potential use of Synthetic Aperture Radar for estimating methane
ebullition from Arctic lakes, J. Am. Water Resour. As., 44, 305–315, 2008.

</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>40</label><mixed-citation>
Walter Anthony, K., Vas, D. A., Brosius, L., Chapin III, F. S., and Zimov, S.
A.: Estimating methane emissions from northern lakes using ice- bubble
surveys, Limnol. Oceanogr.-Meth., 8, 592–609, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>41</label><mixed-citation>
Walter Anthony, K. M. and Anthony, P.: Constraining spatial variability of
methane ebullition seeps in thermokarst lakes using point process models, J.
Geophys. Res.-Biogeo., 118, 1–20, <a href="http://dx.doi.org/10.1002/jgrg.20087" target="_blank">doi:10.1002/jgrg.20087</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>42</label><mixed-citation>
Walter Anthony, K. M., Anthony, P., Grosse, G., and Chanton, J.: Geologic
methane seeps along boundaries of Arctic permafrost thaw and melting
glaciers, Nat. Geosci., 5, 419–426, <a href="http://dx.doi.org/10.1038/ngeo1480" target="_blank">doi:10.1038/ngeo1480</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>43</label><mixed-citation>
Walter Anthony, K. M., Zimov, S. A., Grosse, G., Jones, M. C., Anthony, P.,
Chapin III, F. S., Finlay, J. C., Mack, M. C., Davydov, S., Frenzel, P., and
Frolking, S.: A shift of thermokarst lakes from carbon sources to sinks
during the Holocene epoch, Nature, 511, 452–456, <a href="http://dx.doi.org/10.1038/nature13560" target="_blank">doi:10.1038/nature13560</a>,
2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>44</label><mixed-citation>
West, J. J. and Plug, L. J.: Time-dependent morphology of thaw lakes and
taliks in deep and shallow ground ice, J. Geophys. Res., 113, 1–14,
<a href="http://dx.doi.org/10.1029/2006JF000696" target="_blank">doi:10.1029/2006JF000696</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>45</label><mixed-citation>
Wik, M., Crill, P. M., Bastvikenm D., Danielsson, Å., and Norbäck,
E.: Bubbles trapped in arctic lake ice: Potential implications for methane
emissions, J. Geophys. Res., 116, 1–10, <a href="http://dx.doi.org/10.1029/2011JG001761" target="_blank">doi:10.1029/2011JG001761</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>46</label><mixed-citation>
Zimov, S. A., Voropaev, Y. V., Semiletov, I. P., Davidov, S. P.,
Prosiannikov, S. F., Chapin III, F. S., Chapin, M. C., Trumbore, S., and
Tyler, S.: North Siberian Lakes: A methane source fueled by Pleistocene
carbon, Science, 277, 800–802, <a href="http://dx.doi.org/10.1126/science.277.5327.800" target="_blank">doi:10.1126/science.277.5327.800</a>, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>47</label><mixed-citation>
Zimov, S. A., Davydov, S. P., Zimova, G. M., Davydova, A. I., Schuur, E. A.
G., Dutta, K., and Chapin III, F. S.: Permafrost carbon: Stock and
decomposability of a globally significant carbon pool, Geophys. Res. Lett.,
33, , 1–5, <a href="http://dx.doi.org/10.1029/2006GL027484" target="_blank">doi:10.1029/2006GL027484</a>, 2006.
</mixed-citation></ref-html>--></article>
