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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-3109-2016</article-id><title-group><article-title>Robotic observations of high wintertime carbon export in <?xmltex \hack{\newline}?>California coastal
waters</article-title>
      </title-group><?xmltex \runningtitle{Robotic observations of high wintertime carbon export}?><?xmltex \runningauthor{J. K. B. Bishop et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Bishop</surname><given-names>James K. B.</given-names></name>
          <email>jkbishop@berkeley.edu</email>
        <ext-link>https://orcid.org/0000-0002-8036-3017</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Fong</surname><given-names>Michael B.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4387-8986</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Wood</surname><given-names>Todd J.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Earth and Planetary Science, UC Berkeley, Berkeley, CA
94720, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Earth Sciences Division, Lawrence Berkeley National Laboratory,
Berkeley, CA 94720, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Chemistry, Scripps Institution of Oceanography, La
Jolla, CA 92093, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">James K. B. Bishop (jkbishop@berkeley.edu)</corresp></author-notes><pub-date><day>30</day><month>May</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>10</issue>
      <fpage>3109</fpage><lpage>3129</lpage>
      <history>
        <date date-type="received"><day>22</day><month>February</month><year>2016</year></date>
           <date date-type="rev-request"><day>25</day><month>February</month><year>2016</year></date>
           <date date-type="rev-recd"><day>3</day><month>May</month><year>2016</year></date>
           <date date-type="accepted"><day>5</day><month>May</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016.html">This article is available from https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016.pdf</self-uri>


      <abstract>
    <p>Biologically mediated particulate organic and inorganic carbon (POC and PIC)
export from surface waters is the principal determinant of the vertical
oceanic distribution of pH and dissolved inorganic carbon and thus sets the
conditions for air–sea exchange of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>; exported organic matter also
provides the energy fueling communities in the mesopelagic zone. However,
observations are temporally and spatially sparse. Here we report the first
hourly-resolved optically quantified POC and PIC sedimentation rate time
series from an autonomous Lagrangian Carbon Flux Explorer (CFE), which
monitored particle flux using an imaging optical sedimentation recorder (OSR)
at depths below 140 m in the Santa Cruz Basin, CA, in May 2012, and in
January and March 2013. Highest POC vertical flux
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100–240 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> occurred in January, when
most settling material was millimeter- to centimeter-sized aggregates but
when surface biomass was low; fluxes were <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 18 and
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 6 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively, in March and May, under
high surface biomass conditions. An unexpected discovery was that January
2013 fluxes measured by CFE were 20 times higher than that measured by
simultaneously deployed surface-tethered OSR; multiple lines of evidence
indicate strong undersampling of aggregates larger than 1 mm in the latter
case. Furthermore, the January 2013 CFE fluxes were about 10 times higher
than observed during multiyear sediment trap observations in the nearby Santa
Barbara and San Pedro basins. The strength of carbon export in biologically
dynamic California coastal waters is likely underestimated by at least a
factor of 3 and at times by a factor of 20.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Phytoplankton account for half of global net photosynthesis (Field et al.,
1998), or about 50 Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, yet they live for a week before being
removed from the euphotic zone through grazing or abiotic aggregation
processes. While most phytoplankton carbon is recycled in the surface layer,
recent model- and observation-based estimates (Henson et al., 2011; Yao and
Schlitzer, 2013; Siegel et al., 2014) suggest that globally 5 to 12 Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is
exported below the euphotic zone as sinking particulate organic and
inorganic carbon (POC and PIC) in fecal pellets, amorphous large aggregates,
and independently sinking carapaces and calcareous shells (e.g., Bishop et al., 1978; Alldredge and Silver, 1988; Turner, 2015). Many
large amorphous aggregate particles (e.g., greater in size than 0.5 mm) would
also be classified as marine snow by virtue of their being visible to the
naked eye or camera in reflected light; such aggregates have been shown to
originate as products of feeding (e.g., ejected boluses of fecal material, discarded mucus feeding webs, or appendicularian houses) or from turbulence-driven aggregation of biogenic organic and inorganic particles (Alldredge and Silver, 1988). Important to POC settling is particulate
inorganic carbon (i.e., PIC), in the form of calcite foraminifera shells and
coccolith plates and aragonite pteropod shells and shell fragments.
Foraminifera shells preserved in sediments in particular are key to
unraveling past climate and ocean chemistry, yet little of their dynamics
in the water column has been understood (e.g., Bé et al., 1985). Together with
siliceous diatom frustules and radiolarian tests, biogenic carbonates are a
major factor governing the excess density, and hence sinking rate, of
aggregate particles carrying POC downward from the surface layer (Armstrong
et al., 2002). As much of the exported organic matter is consumed in the water
column or at the sediment–sea-water interface, little POC is preserved in
sediments. The varied processes of production, grazing, recycling, export,
and subsurface remineralization constitute the ocean's biological carbon
pump (Volk and Hoffert, 1985).</p>
      <p>Direct observations of POC and PIC sedimentation fluxes in the upper
thousand meters of the ocean are sparse, of short duration (days), and, with
few exceptions, mostly during summertime. This is because all
observations to date have required ships to be present or nearby (e.g., Martin et al., 1987; Buesseler et al., 2000; Stanley et al., 2004; Lam and Bishop, 2007;
Lampitt et al., 2008; Lee et al., 2009; Owens et al., 2013).</p>
      <p>Such direct observations are often used to calibrate models used to estimate
global carbon export (e.g., Henson et al., 2011; Siegel et al., 2014). Henson et al. (2011)
estimated an export of 5 Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, based on the synthesis of a decade
of ship observations of the ratio of dissolved radioactive <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>234</mml:mn></mml:msup></mml:math></inline-formula>Th to
parent <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>238</mml:mn></mml:msup></mml:math></inline-formula>U, <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>234</mml:mn></mml:msup></mml:math></inline-formula>Th <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC ratios measured in shallow sediment trap or
pump-sampled particulates, and satellite-based estimates of primary
productivity. Siegel et al. (2014) estimated a global carbon export of 6 Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> using the combination of food web models – calibrated with
shipboard observations of production, grazing, and sedimentation – and
global satellite retrievals of size-dependent phytoplankton biomass. In
contrast, Yao and Schlitzer (2013) estimated an export of 12 Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
by inversion, within an ocean circulation model, of ocean nutrient fields
averaged over 5 to 6 decades. It is unknown whether the factor of 2 difference in export numbers is a reflection of a strong, recently weakening
biological carbon pump or of differences in methodology. Either way, there
is major uncertainty in both the strength and stability of the ocean's
biological carbon pump and of consequent feedbacks to atmospheric CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
trends; furthermore, there remains major uncertainty as to the magnitude of
the energy flow carried by sinking particles to sustain mesopelagic
communities (Burd et al., 2010; Banse, 2013).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>Left: Carbon Flux Explorer showing the Sounding Oceanographic Lagrangian Observer (SOLO) float and
interfaced optical sedimentation recorder (OSR). Top right: relief map for
Southern California Bight (Google Earth) centered on the Santa Cruz Basin
(SCB) and our study area (shown in yellow). Also shown are locations of
moored sediment trap deployments in the Santa Barbara Basin (SBB; Thunnel,
1998) and San Pedro Basin (SPB; Collins et al., 2011). Lower right:
operations within study area. Surfacing positions of CFE001 during May 2012
(red triangles), January 2013 (blue circles), and March 2013 (green box); also
shown is track for the surface-tethered OSR (BUOY-OSR) system (blue line) in January 2013; separation
of CFE and BUOY-OSR was approximately 9 km. Small symbols denote locations
of conductivity, temperature, depth (CTD) rosette casts. All motion was to the southwest. CFE and BUOY-OSR deployments
took place near 33.75<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 119.5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W. CTD rosette profiles were taken
within several kilometers of CFE and BUOY-OSR positions.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f01.png"/>

      </fig>

      <p>Eppley and Peterson (1979) pointed out the importance of nearshore
waters, defined as coastal waters deeper than 200 m, to the ocean carbon
cycle. In their estimate, nearshore waters account for over 40 % of
global new production and hence particle export. While there have been
arguments that this number may be somewhat high in the modern context
(Henson et al., 2011), all recent calculations of global export (although not
broken down as done as in Eppley and Peterson, 1979) indicate a lower contribution from
coastal waters.</p>
      <p>In this paper, we describe direct in situ observations of carbon export in
biologically dynamic ocean waters near the California coast obtained using a
fully autonomous ocean profiling Carbon Flux Explorer (CFE; Fig. 1a) that we
have developed. The Carbon Flux Explorer is designed to perform sustained
high-frequency observations of POC and PIC sedimentation within the upper
kilometer (or twilight zone) of the ocean for seasons to years and to
operate in an observational context not dependent on ships. The CFE melds
the concept of current-following, sample-collecting neutrally buoyant
sediment traps (Buesseler et al., 2000; Stanley et al., 2004; Lampitt et al., 2008; Owens
et al., 2013) with photographic imaging of the particles as they are deposited in
a sediment trap (Asper, 1987). The current-following approach aims to avoid
the hydrodynamic biases likely with surface-tethered sediment traps
(Gardner, 2000; Buesseler et al., 2007).</p>
      <p>Bishop et al. (2004), Bishop and Wood (2009) and Estapa et al. (2013) have deployed
transmissometer-equipped profiling floats to observe the high-frequency
variability of the systematics of sedimentation. When the floats yo-yo from
depth to the surface, transmissometers record the concentration variability
of particles in the water column. As the floats drift at depth between
profiles, there is a measurable transmission loss (or attenuance increase)
as settled particles accumulate on the upward-looking transmissometer
window. These data, when normalized by the time at depth, yield a simple
metric, or index, of sedimentation. In contrast, with direct high-resolution
imaging of the settled particles, the CFE is not only able to quantify
optical metrics of particle flux but is also able to gain detail on the kinds
of particles and thus the specifics of the process governing carbon export.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Detail of image analysis scheme for CFE and BUOY-OSR images.
Images from NH1301 CFE001 deployment. Panel <bold>(a)</bold>: raw backlit (TRA) images are
divided by the in situ TRA lighting reference (cross-hair reticle has 1 mm
sized dashes) to get transmittance. This image is transformed to units of
attenuance. Panel <bold>(b)</bold>: raw crossed polarized transmitted light (POL) image is first
corrected for attenuation effects of optically dense particles by dividing
by PCF, an empirically derived factor proportional to attenuance (ATN). The
POL lighting REF is then subtracted and intensity normalized by the TRA lighting REF to yield the NORM POL image. The contrast and brightness of the final
image is enhanced. Panel <bold>(c)</bold>: raw dark field (DRK) images are normalized by
dividing by the in situ lighting reference intensity.</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f02.pdf"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Magnified detail of a marine-snow aggregate from the upper left-hand quadrant of the sample image in Fig. 2 after processing to normalized dark field (DRK) counts,
attenuance (ATN), and polarized (POL) counts. The scale of the aggregate is
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 cm. Image resolution is 13 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. An empty 600 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m pteropod shell is at the bottom left of the POL image. The 10 bright
spherical regions in the POL image are <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 200 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m sized
foraminifera shells; haze in aggregates is likely due to coccoliths.</p></caption>
        <?xmltex \igopts{width=412.564961pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f03.pdf"/>

      </fig>

      <p>Below, we present observations from CFE development testing during three
expeditions off the coast of southern California aboard R/V <italic>New Horizon</italic>: 29 May–4 June  2012 (NH1204), 18–21 January  2013 (NH1301), and 27–31 March  2013
(NH1304). These observations, like past ship-tended studies using neutrally
buoyant and surface-tethered sediment traps, are of relatively short
duration (days); however, they are the first carried out in a productive
coastal environment. CFE data are analyzed below in the framework of
remotely sensed surface chlorophyll and POC, in situ water column optical
properties, and subsurface currents. The study site is a 150 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> region
centered at 33<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>43<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N, 119<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>33<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W in the 1900 m deep Santa
Cruz Basin (SCB) near the California coast (Fig. 1b and c).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>Carbon Flux Explorer and BUOY-OSR positions.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.94}[.94]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col5" align="center">Carbon Flux Explorer surfacing positions  </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Dive</oasis:entry>  
         <oasis:entry colname="col2">Date</oasis:entry>  
         <oasis:entry colname="col3">Time (UTC)</oasis:entry>  
         <oasis:entry colname="col4">Longitude</oasis:entry>  
         <oasis:entry colname="col5">Latitude</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">123</oasis:entry>  
         <oasis:entry colname="col2">1-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">3:15</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.475</oasis:entry>  
         <oasis:entry colname="col5">33.738</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">124</oasis:entry>  
         <oasis:entry colname="col2">1-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">11:49</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.479</oasis:entry>  
         <oasis:entry colname="col5">33.731</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">125</oasis:entry>  
         <oasis:entry colname="col2">1-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">21:14</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.484</oasis:entry>  
         <oasis:entry colname="col5">33.736</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">126</oasis:entry>  
         <oasis:entry colname="col2">2-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">4:52</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.480</oasis:entry>  
         <oasis:entry colname="col5">33.744</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">127</oasis:entry>  
         <oasis:entry colname="col2">2-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">13:28</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.498</oasis:entry>  
         <oasis:entry colname="col5">33.744</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">128</oasis:entry>  
         <oasis:entry colname="col2">2-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">22:48</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.492</oasis:entry>  
         <oasis:entry colname="col5">33.750</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">129</oasis:entry>  
         <oasis:entry colname="col2">3-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">6:24</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.493</oasis:entry>  
         <oasis:entry colname="col5">33.737</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">130</oasis:entry>  
         <oasis:entry colname="col2">3-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">15:10</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.508</oasis:entry>  
         <oasis:entry colname="col5">33.740</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">131</oasis:entry>  
         <oasis:entry colname="col2">3-Jun-2012</oasis:entry>  
         <oasis:entry colname="col3">20:45</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.512</oasis:entry>  
         <oasis:entry colname="col5">33.735</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">143</oasis:entry>  
         <oasis:entry colname="col2">19-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">8:16</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.479</oasis:entry>  
         <oasis:entry colname="col5">33.744</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">144</oasis:entry>  
         <oasis:entry colname="col2">19-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">9:13</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.484</oasis:entry>  
         <oasis:entry colname="col5">33.744</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">145</oasis:entry>  
         <oasis:entry colname="col2">19-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">16:31</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.514</oasis:entry>  
         <oasis:entry colname="col5">33.744</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">146</oasis:entry>  
         <oasis:entry colname="col2">19-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">23:45</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.522</oasis:entry>  
         <oasis:entry colname="col5">33.722</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">147</oasis:entry>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">8:21</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.575</oasis:entry>  
         <oasis:entry colname="col5">33.714</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">148</oasis:entry>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">14:52</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.600</oasis:entry>  
         <oasis:entry colname="col5">33.695</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">149</oasis:entry>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">20:46</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.605</oasis:entry>  
         <oasis:entry colname="col5">33.667</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">161</oasis:entry>  
         <oasis:entry colname="col2">28-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">10:55</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.537</oasis:entry>  
         <oasis:entry colname="col5">33.709</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">162</oasis:entry>  
         <oasis:entry colname="col2">28-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">18:19</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.529</oasis:entry>  
         <oasis:entry colname="col5">33.709</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">163</oasis:entry>  
         <oasis:entry colname="col2">29-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">4:08</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.555</oasis:entry>  
         <oasis:entry colname="col5">33.705</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">164</oasis:entry>  
         <oasis:entry colname="col2">29-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">10:47</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.586</oasis:entry>  
         <oasis:entry colname="col5">33.687</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">165</oasis:entry>  
         <oasis:entry colname="col2">29-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">18:05</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.576</oasis:entry>  
         <oasis:entry colname="col5">33.693</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">166</oasis:entry>  
         <oasis:entry colname="col2">30-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">3:02</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.607</oasis:entry>  
         <oasis:entry colname="col5">33.696</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">167</oasis:entry>  
         <oasis:entry colname="col2">30-Mar-2013</oasis:entry>  
         <oasis:entry colname="col3">9:46</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.614</oasis:entry>  
         <oasis:entry colname="col5">33.673</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col5" align="center">BUOY-OSR positions January 2013 </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Date</oasis:entry>  
         <oasis:entry colname="col3">Time (UTC)</oasis:entry>  
         <oasis:entry colname="col4">Longitude</oasis:entry>  
         <oasis:entry colname="col5">Latitude</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">9:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.490</oasis:entry>  
         <oasis:entry colname="col5">33.740</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">10:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.496</oasis:entry>  
         <oasis:entry colname="col5">33.739</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">11:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.501</oasis:entry>  
         <oasis:entry colname="col5">33.739</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">12:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.507</oasis:entry>  
         <oasis:entry colname="col5">33.739</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">13:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.513</oasis:entry>  
         <oasis:entry colname="col5">33.740</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">14:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.519</oasis:entry>  
         <oasis:entry colname="col5">33.741</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">15:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.524</oasis:entry>  
         <oasis:entry colname="col5">33.742</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">16:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.530</oasis:entry>  
         <oasis:entry colname="col5">33.744</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">17:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.534</oasis:entry>  
         <oasis:entry colname="col5">33.745</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">18:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.538</oasis:entry>  
         <oasis:entry colname="col5">33.746</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">19:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.542</oasis:entry>  
         <oasis:entry colname="col5">33.747</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">20:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.545</oasis:entry>  
         <oasis:entry colname="col5">33.748</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">21:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.546</oasis:entry>  
         <oasis:entry colname="col5">33.749</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">22:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.548</oasis:entry>  
         <oasis:entry colname="col5">33.748</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20-Jan-2013</oasis:entry>  
         <oasis:entry colname="col3">23:00</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>119.550</oasis:entry>  
         <oasis:entry colname="col5">33.747</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Carbon Flux Explorer (CFE) and surface-tethered OSR (BUOY-OSR)</title>
      <p>The CFE is comprised of an optical sedimentation recorder (OSR) interfaced
with a conductivity–temperature–depth (CTD) equipped Sounding Oceanographic
Lagrangian Observer (SOLO) float (Davis et al., 2001). The CFE dives
repeatedly (daily in this study) below the surface to obtain OSR observations
at three target depths. The CFE's optical sedimentation recorder (OSR;
Fig. A1, Sect. A1 in the Appendix) awakes when the CFE reaches a target
depth. Particles settle through a hexagonal celled baffle (1 cm opening,
5 cm length) into a high-aspect titanium funnel and settling column before
depositing on a 2.54 cm diameter glass sample stage; the funnel diameter is
15.4 cm. Particles are imaged in three lighting modes: transmitted,
transmitted–cross-polarized, and dark field. On first wake-up of a given
dive, the sample stage is flushed with water and images of the particle-free
stage are obtained. At timed intervals (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 min in data described
here) the OSR repeats image sets, which register the sequential buildup of
particles. After the predetermined number of image sets over <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1.8 h,
cleaning occurs and a new reference image set is obtained. After <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 h
at a target depth, the OSR performs a final image and cleaning cycle and
reference image set, and the SOLO surfaces to report GPS position, CTD
profile data and OSR engineering data, and dives to its next target depth (Table 1).
Every three dive cycles, the depth order is repeated; in the current study,
target depths were 150, 300, and 500 m. A ballasting error in May 2012 led
to the CFE operating 300 to 400 m deeper than planned. In the CFE described
here, all images were stored aboard the OSR for post recovery
analysis.</p>
      <p>We also deployed an OSR tethered at 237 m below a drifting buoy array in January 2013. This system is referred to as BUOY-OSR in the text.
Positions of CFE surfacing and of the surface-tethered BUOY-OSR are summarized in Table 1.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS2">
  <title>OSR image data reduction</title>
      <p>Images were taken under transmitted, transmitted–cross-polarized, and dark
field illumination and were processed to yield three parameters that
characterize particle abundance, according to the scheme depicted in Fig. 2.
The parameters are particle attenuance, cross-polarized photon yield, and
dark field counts. Attenuance is the best measure of particle loading as
light is reduced exponentially as it propagates through the sample.
Cross-polarized photon yield takes advantage of the birefringent property of
calcium carbonate and is a measure of particulate inorganic carbon. Dark
field counts reveal the color of particles. Details of the treatment of
transmitted light and transmitted cross-polarized light images are covered
in Sects. 2.2.1 and 2.2.2, respectively. Dark field images are normalized
by illumination intensity and then transformed to a consistently scaled
reflectance in counts above background. A full-resolution post-processing
image of an aggregate particle from January 2013 is shown for all modes of
illumination in Fig. 3.</p>
<sec id="Ch1.S2.SS2.SSS1">
  <title>Attenuance (ATN)</title>
      <p>Transmitted light (TRA) images are normalized by an in situ particle-free
image of the sample stage area under transmitted light illumination. Image
attenuance (ATN), the sum of both light scattering loss and particle
absorption of the primary beam, is calculated as the negative log<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>10</mml:mn></mml:msub></mml:math></inline-formula> of
transmittance and is a measure of both aggregate thickness and transparency.
The effects of overlaying particles are additive in attenuance units. We
calculate attenuance in log<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>10</mml:mn></mml:msub></mml:math></inline-formula> units rather than in natural log units as
order-of-magnitude changes of transmission are easy to infer. Attenuance
data reported here may be converted to natural log units by multiplying by
2.303.</p>
      <p>In order to detect particles, we set the lowest threshold of pixel
attenuance to be 0.02. The attenuance of all pixels identified as particles
is integrated across sample stage area and then divided by the total number
of pixels of the sample stage area to yield the average particle load of the
sample stage (in attenuance units). For convenience, attenuance is multiplied
by 1000 and reported in units of milli-attenuance (mATN, Fig. 4a). The stage load,
when multiplied by sample stage area, yields units of mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>. Because
the light source is directly above the sample stage, the stage load
(mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>) is an optical “volume” of material on the sample stage.
Attenuance flux (in units of mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is calculated
by taking differences of successive stage loads, divided by the mouth
opening of the trap, and further divided by the time (in days) between image
sets (Fig. 5a). Attenuance is never saturated in our images (e.g., transmission is
always greater than 0).</p>
</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <title>Cross-polarized photon yield (POL)</title>
      <p>Transmitted, cross-polarized light images are processed in three steps:
compensation for the attenuation effects of particles, subtraction of the
particle-free blank and normalization for light source intensity. Due to the
isolation of substage polarizer in the pressure case of the OSR,
hydrostatically induced stress on the glass pressure case window at depth
induces an interference seen by the camera; thus, absorbing particles appear
dark in the uncorrected image (Fig. 2b – RAW POL image). The absorption
effect is compensated by the division of observed image counts by a polarization
compensation factor (PCF), an empirically derived function of attenuance:
PCF <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1/(2.1 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> ATN). This stress polarization interference has been
eliminated in later builds of the CFE by moving the substage polarizer
outside of the pressure case.</p>
      <p>Following correction, image counts at each pixel (for particles identified
using the 0.02 attenuance threshold) are integrated across all particle
pixels and normalized by the total number of pixels covering the stage area.
Sample counts are normalized to lamp brightness and scaled by the difference
in exposure time for POL vs. TRA images to yield the quantity
cross-polarized photon yield, expressed as a fraction of incident beam
intensity. Results are scaled up by 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> and data are reported in parts per million (Fig. 4b).
This optical measure of flux is in units of ppm cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 5b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Results
from CFE deployments in the Santa Cruz Basin. CFE depths shown in italics.
Panel <bold>(a)</bold>: sample attenuance from transmitted light images. Panel
<bold>(b)</bold>: polarized photon yield in parts per million from
cross-polarized light images. Small circles denote the time that the images
were taken. The sawtooth pattern registers particle accumulation and drops to
baseline at the time of stage cleaning.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f04.pdf"/>

          </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><caption><p>POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> <bold>(a)</bold> and PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> <bold>(b)</bold> flux systematics from CFE
deployments in the Santa Cruz Basin. CFE depths are shown in italics in <bold>(a)</bold>.
Bars and small circles denote average flux over 1.8 and 0.3 h intervals,
respectively.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f05.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS2.SSS3">
  <title>Interference by swimmers</title>
      <p>In the PIC flux time series, there were several instances when a calcified
swimming organism was detected. This mainly affected data from expedition
NH1304, and cyprid barnacle larvae were the predominant interfering
organism. When the appearance and disappearance of these organisms in the
image series led to a strong positive and then negative flux, the interfering
flux estimate was eliminated from the 1.8 h average. In one other case
during NH1304, a calcified amphipod carapace (Fig. 4b) was removed from the
1.8 h average PIC flux. This carapace was clearly part of the flux but
was excluded in our consideration of aggregate sedimentation. Excluded
points in Fig. 5b are indicated by circled (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>⊕</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> symbols. Attenuance
flux data were not modified as swimmer interference did not alter the signal
in a dominant way.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS4">
  <title>POC and PIC flux proxy</title>
      <p>We hypothesize that attenuance is the best proxy for the POC in particles by
analogy to the finding that the transmissometer measured particle beam
attenuation coefficient (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">P</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is highly correlated
to POC concentration (e.g., Bishop and Wood, 2008). We note that the particle
beam attenuation coefficient is expressed in units of per meter, while our
attenuance values are dimensionless. This is because in transmissometry,
beam attenuation occurs continuously along the seawater path that the light
beam passes through. In our case, the path length from light to sample stage
is unimportant as all attenuance of light occurs in the thin layer of
particles on the sample stage. Our use of the image of the light source as a
transmission reference removes the minor effects of light loss through the
water path.</p>
      <p>Cross-polarized photon yield is a measure of PIC, which is comprised of
biogenic calcite and aragonite polymorphs of calcium carbonate. The photon
yield under cross-polarized illumination (or birefringence) of carbonates
has been shown to scale linearly with PIC concentration; furthermore,
biogenic carbonates both dominate all mineral material in the water column
and have a 10 times greater photon yield compared with other birefringent
minerals (Guay and Bishop, 2002).</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S2.SS3">
  <?xmltex \opttitle{Conversion of POC${}_{\text{ATN}}$ flux to POC flux}?><title>Conversion of POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux to POC flux</title>
      <p>Calibration samples from the BUOY-OSR system were not useful due to a
20-fold lower particle collection rate compared to that of the CFE
(described below in Sect. 3.3). We thus estimate the amount of POC in our
images in order to translate attenuance flux to POC flux.</p>
      <p>Bishop et al. (1978) report information on the dry-weight density and
geometric properties of particles of similar morphology as sampled here.
Particularly, we use a particle dry-weight density of 0.087 g cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and
the Bishop et al. (1978) equation, which estimates aggregate thickness (<inline-formula><mml:math display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula>,
in cm) as a function of equivalent circular diameter (<inline-formula><mml:math display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula>, in cm):

                <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>h</mml:mi><mml:mo>=</mml:mo><mml:mn>0.052</mml:mn><mml:mi>d</mml:mi><mml:mo>+</mml:mo><mml:mn>0.0045.</mml:mn></mml:mrow></mml:math></disp-formula>

          We analyzed a series of five images collected on 20 January 2013 from
11:11:47 to 12:39:47 UTC (just before cleaning). The last image of this set
had 65 % of the sample stage covered with particles. These images are
provided in the Supplement for readers to independently analyze. The software
package ImageJ (National Institutes of Health, USA –
<uri>http://rsb.info.nih.gov/ij</uri>) was used to measure the equivalent circular
diameter of aggregates. As aggregates overlapped in successive images due to
the unexpectedly high sedimentation observed, successive images were stepwise
subtracted in pairs prior to size analysis. Aggregate volume was calculated
as the product of cross sectional area and thickness, h.</p>
      <p>A total of 127 aggregates from 500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m to 8.3 mm in size were
enumerated in all five images. A size cutoff of 800 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m was used to
minimize contamination of the analysis due to the slight expansion of
aggregate dimension over time as they rested on the stage. Although size
distributions were initially quantified to a lower limit of 20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m,
it is important to note that 97 % of the volume attenuance of the sample
was accounted for by particles &gt; 800 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in this sample.
For the remaining 63 particles larger than 800 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, we calculated an
aggregate volume of 0.113 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>. To estimate the POC flux, we assume an
aggregate dry-weight density of 0.087 g cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> (e.g., from Fig. 22 in
Bishop et al., 1978) and thus calculate the weight of aggregate matter as
0.0098 g. Organic matter at depths between 100 and 500 m is typically
60 % (range 50–70 %) of dry weight (Fig. 11 in Bishop et al., 1978).
Thus, organic-matter (OM) weight is 0.0059 g. We estimate POC (as carbon) by
dividing this mass by the OM : C conversion factor, 1.88 from Hedges et
al. (2002). We divide by 12.011, the atomic weight of carbon, to yield a POC
loading of 0.26 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> moles. The opening of the OSR funnel has
a diameter of 15.4 cm, which yields an assumed trap collection area of
186.3 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>. The time interval for collection of this sample was 1.84 h,
or 0.0766 days. Combining this information yields a carbon flux of
183 mmol m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The average POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux for all
particles &gt; 13 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in size during the same time interval
was 66.2 mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. As mentioned above, over
97 % of cumulative sample attenuance was in the
&gt; 800 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m size fraction. The conversion factor for
POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux to POC flux is the ratio of 183 to
66.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.97 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2.8. This conversion factor allows the estimation
of POC fluxes observed for a comparison with other data from nearby waters.</p>
      <p>Alldredge (1998) collected marine snow using scuba at euphotic depths of 10
to 20 m in the nearby Santa Barbara Basin. They imaged particles in the
laboratory, derived maximum and minimum dimensions, and assumed an elliptical
volume. From this they calculated the equivalent spherical volume (ESV
in mm<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Samples were analyzed for POC and a regression formula was
derived (POC (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g) <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.99 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> ESV<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn>0.52</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. If we use the
ImageJ 2-D analyses of minimum and maximum aggregate dimensions in our images
to compute ESV following Alldredge's methods, we get a summed ESV value that is 8.5 times higher than that obtained using our approach. If we use the
Alldredge (1998) conversion of ESV to POC for each aggregate and sum over all
particles &gt; 1 mm in size, then the amount of POC is 17 times
lower than our estimate. The Alldredge method yields a POC density for
aggregates equal to 0.00020 g C cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, while our method yields
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.028 g C cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The carbon density of aggregate particles
derived from their equations differs from ours by a factor of 140. We are not
sure if the marine-snow
particles sampled by Alldredge (1998) in shallow waters were mostly empty of material, or if they
deflate as they sink below the euphotic zone. Bishop et al. (1978) describe
aggregates sampled from 100–400 m that appeared similarly loaded to those
described here; for this reason believe that our method is internally most
consistent.</p>
      <p>We stress that the factor 2.8 used for the conversion of POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula>
flux to POC flux is approximate. Equation (1) for aggregate thickness is the
only applicable published study that we are aware of. The dry-weight density
factor (0.087 g cm<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was taken for aggregates that were similarly
optically dense as observed in this sample. Bishop et al. (1978) also
reported dry density values as high as 0.24 g cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The organic-matter
percentage for large particulates used in the calculation above is typical of
values obtained by our group using in situ filtration. We note that Collins
et al. (2011) report upper water column POC flux and mass flux data from
surface-tethered sediment traps in the San Pedro Basin (Fig. 1), closer to
the shore, which yield OM values closer to 30 %, with the rest being
contributed by inorganic terrigenous and biogenic phases. This would require
our estimate of dry-weight particle density to be proportionately adjusted
upwards to account for the greater fraction of inorganic ballasting material
and thus compensate for the reduced organic percentage. A factor of 2
adjustment of the POC : POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> ratio either way will not change
our conclusions regarding the high magnitude of the sedimentation rate
observed in January 2013 by the CFE, nor will it change the relative
difference observed between CFE and BUOY-OSR presented below.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Satellite data processing</title>
      <p>Retrievals of chlorophyll and POC from observations made by the Moderate
Resolution Imaging Spectroradiometer (MODIS) on NASA's Aqua satellite are
provided on the NASA Distributed Active Archive Center (DAAC). Level 2 Local
Area Coverage (L2-LAC) data at 1 km resolution for the period of the three
expeditions were downloaded on April 4 2013 and processed using SeaDAS
software. Chlorophyll and POC were retrieved for pixels within a 2 km search
radius of 33.72<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 119.5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W and were selected using the
standard ocean color processing quality flags. Means and standard deviations
were calculated and data were further selected based on the requirement of
five valid pixels. Further analysis of spatial and temporal trends of
chlorophyll within our study area is presented in Appendix Sect. A3.</p>
      <p>Surface photosynthetically active radiation (PAR) estimated from MODIS Aqua
data  for January, March, and May expeditions was 25, 45, and 60 einsteins m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. Corresponding values for diffuse
attenuation coefficient for PAR (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>PAR</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from beam attenuation
coefficient profiles (Bishop and Wood, 2009) were 0.068, 0.20, and 0.18 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Euphotic zone depths corresponding to the 1 % light level were
68, 23, and 26 m. The euphotic zone depths based on the 1 E m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> isolume were 50, 20, and 25 m.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6"><caption><p>Panel <bold>(a)</bold>: chlorophyll <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and POC from the MODIS Aqua
satellite; lines are five-point running means. Color scheme for May 2012
(red), January 2013 (blue), and March 2013 (green). Open and filled graphics
in <bold>(a)</bold> and <bold>(b)</bold> correspond to the week previous to and
during each expedition. Panel <bold>(b)</bold>: from left to right successive bar
pairs depict satellite chlorophyll and satellite POC; crosshatched bars
denote 0–20 m transmissometer POC. Panel <bold>(c)</bold>: POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula>
flux for January (blue circles), March (green squares), and May (red
triangles); the large filled symbols are a grand average for a particular
depth, and small open symbols denote 1.6 h averaged data. Solid and dashed
blue lines are Martin curve fits to January 20013 data corresponding to <inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>
values of 0.858 and 0.36, respectively. Panel <bold>(d)</bold>: PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula>
flux profiles; symbols as in <bold>(c)</bold>.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f06.pdf"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Flux time series, hydrography, and remote sensing data</title>
      <p>Figure 5 (above) shows the time series of POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux and
PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> flux. In contrast to surface-tethered sediment traps (Martin
et al., 1987), we found that the influence by/presence of swimming organisms
was rarely significant in our image time series (see Supplement animations of
CFE imagery). The highest POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux was measured in January 2013,
intermediate flux was observed in March 2013, and lowest flux was observed in
May 2012. Similar temporal–depth systematics were observed for
PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> flux (Fig. 5b); however, the relative ratio of
PIC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC flux was highest in March 2013.</p>
      <p>The hydrographic context for our observations was established by CTD and
transmissometer casts made to full water depth three to four times per day
during each expedition. We found that mixed layer depths were mostly
shallower than 10 m during all expeditions, reflective of the California
coastal upwelling regime and net divergence of surface waters in the Santa
Cruz Basin. We calculate properties of the upper 20 m, as these are most
closely comparable to remotely sensed surface properties. Upper 20 m
temperatures for January, March, and May averaged 12.6, 13.5, and
15 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, respectively, reflecting seasonal warming. Over each cruise,
averaged 0–20 m POC concentrations derived from transmissometer profiles
(<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD; Appendix Sect. A2; Fig. A2) were 4.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.7 (January),
17.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.4 (March), and 15.4 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.7 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M (May). POC was
most variable in May 2012, with concentrations rising from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 to
25 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M over the period of observations reflecting the progression of
a plankton bloom southward from Point Conception. Corresponding euphotic zone
depths (EZDs) based on the 1 einstein m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> isolume (EZD for
1 % light level in parentheses) were 50 (68), 20 (23), and 25 (26) m,
respectively (Sect. 2.4). January and March 2013 showed little temporal POC trend,
indicating a quasi steady-state balance of photosynthesis and loss processes
(Appendix Sect. A2; Fig. A2).</p>
      <p>Figure 6  shows  MODIS Aqua chlorophyll and POC time series, averaged MODIS
chlorophyll and POC values for each cruise period and the previous week,
averaged upper 20 m POC from CTD casts, and depth profiles of POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula>
and PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> flux. Satellite-retrieved POC values agreed well with
transmissometer estimates for March and May and were lowest in January
2013, although the January values were approximately 2.5 times higher than transmissometer estimates.
Imagery of the area in January the week prior to our cruise showed a patchy
(rather than organized) structure in chlorophyll distribution. During the
time of the expedition, distributions were nearly spatially invariant on the
scale of the study area (Supplement, Appendix Sect. A3, Fig. A3).
From all perspectives, January 2013 had the lowest phytoplankton biomass but
by far the highest fluxes of POC and PIC.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Particle flux profiles</title>
      <p>Averaged POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> and PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> flux profiles provide
systematic quantification of the depth trends of sedimentation. In January
2013, POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> fluxes at depths of 150, 300, and 500 m were 67, 85,
and 35 mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively; in March 2013 at
similar depths, flux was between 6 to 7 mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>;
values in May 2012 for the 450–900 m interval fell between 2 and
3 mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> with no depth trend. PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula>
flux trends roughly followed those for POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux.
PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> fluxes at 150, 300, and 500 m depths were 96,
122, and 63 ppm cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (January 2013) and 33, 15,
and 16 ppm cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (March 2013); the apparent
decrease in PIC flux with depth from 2.8 to
0.5 ppm cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in May 2012 may be a consequence of
the low flux condition.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Depth profiles of the ratio of PIC and POC flux proxies. Results
show that highest relative contribution of PIC occurred in March 2013. January
and May values near 500 m are comparable.</p></caption>
          <?xmltex \igopts{width=170.716535pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f07.pdf"/>

        </fig>

      <p>For both POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> and PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> flux, it is also notable that the 1.8 h averaged fluxes for each depth ranged over a factor of 10 relative to
their average for the May and March periods but ranged by less than a
factor of 2 in the high flux period of January 2013. This suggests that
sedimentation is more uniform when large aggregates dominate.</p>
      <p>The profile of PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> ratio (Fig. 7) shows a depth-dependent increase from 1.4 to 2.4 in January, indicating preferential loss
of POC with sinking. In March, PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> ratios slightly
decreased with depth from 4.6 to 3.7. In May 2012, the PIC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC ratio decreased
from 1.5 to 0.3 between 430 and 900 m. The fact that PIC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC can
decrease with depth suggests preferential carbonate dissolution can and does
occur in shallow waters, a finding consistent with Bishop and Wood (2008).
These observations confirm that the relative contribution of carbonates to
aggregate ballasting varies with time.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F8" specific-use="star"><caption><p>Time series of image attenuance from CFE and BUOY-OSR deployments
in the Santa Cruz Basin during January 2013. Time axis shows days elapsed
since 1 January at 00:00 UTC. In <bold>(a)</bold> and <bold>(b)</bold>, the green
lines depict the ATN time series. In <bold>(b)</bold>, red symbols depict
currents relative to the BUOY-OSR at a depth of 237 m that were calculated
using ship broadband acoustic current profiler data (RDI Instruments, Ocean
Surveyor 75) using methods of Hummon and Firing (2003) and 30 min
BUOY-OSR GPS positions. The current dropped briefly below 1 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
the rate of accumulation of particles in the BUOY-OSR increased. This moment
was also the time when the first large aggregates were seen. Also shown in
<bold>(b)</bold> in blue is the temperature time series from the logging CTD. The
most obvious effect on particle collection rate by the BUOY-OSR was the
relative lull in currents near day 19.68. Images from samples indicated by an
asterisk are compared in Fig. 9. Panel <bold>(c)</bold>: time series of CFE and
BUOY-OSR tilt in degrees. CFE tilt averaged 3<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, whereas BUOY-OSR tilt
averaged 0.5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f08.pdf"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F9" specific-use="star"><caption><p>Comparison of representative dark field images of accumulated
settling particles over a 1.8 h period from an optical sedimentation
recorder (OSR) on the Carbon Flux Explorer (CFE, left) vs. that from a
surface BUOY-tethered OSR (right) during NH1301 (January 2013). The CFE was
observing sedimentation at 320 m (image 21:14 UTC). The BUOY-OSR was
deployed at 237 m (image 18:07 UTC). Each image is 2.5 cm across and pixel
resolution is 13 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. The large fluffy 0.5–1.0 cm sized
marine-snow aggregates were almost completely missed by the BUOY OSR. Winds
were near calm (&lt; 5 m s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and surface waves and swell were
almost entirely absent. The BUOY system had <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> of tilt. The
only difference between the CFE and BUOY was the absence and presence of
tidally fluctuating horizontal currents of up to 8 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Only
fragments of the aggregate particles were seen in the BUOY samples.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f09.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>Comparison of surface-tethered optical sedimentation recorder (OSR) flux
with CFE flux</title>
      <p>In January 2013, an OSR system, identical to the OSR on the CFE, was
deployed at 237 m tethered below a buoy system at the surface (Appendix
Sect. A4, Fig. A4). This BUOY-OSR system was engineered to collect
samples needed to calibrate the POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> and PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> data; however,
this approach did not succeed as intended. The POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> time series from CFE and
BUOY-OSR are compared in Fig. 8. The BUOY-OSR yielded POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> and
PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> fluxes of 3.6 mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and 2.2 ppm cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively, approximately
25-fold and 50-fold lower than CFE fluxes at 144 and 320 m depths. At the
same time, BUOY-OSR and CFE images showed that the two systems collected
aggregates of a completely different morphology and size distribution (Fig. 9). The CFE images showed abundant 5 mm to centimeter-sized aggregates.
The BUOY-OSR collected only fragments of these aggregates and few particles
larger than 2 mm.</p>
      <p>Figure 10 shows cumulative volume attenuance size distributions
corresponding to samples collected in January 2013 by the CFE and BUOY-OSR.
We selected CFE images for depths of 144 m (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> in Fig. 8a), 320, and 507 m. We also
selected the BUOY-OSR image (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> in Fig. 8b) and another taken at the
exact same time as the first CFE image. Other BUOY-OSR images were analyzed
for the rest of the time series. CFE images were either the first or second
image after stage cleaning since subsequent images had multiple cases of
particle overlap. The BUOY-OSR images analyzed were from just before stage
cleaning since no particles were overlapping. Size distribution analysis was
performed using ImageJ software, with an attenuance threshold &gt; 0.02 and a size threshold of at least two pixels for a particle. Particles
were classified according to their equivalent circular diameter (ECD), with
the lower size limit of 20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. Volume attenuance for each particle
was computed (the product of particle area and attenuance). Results were
summed cumulatively from largest to smallest particle size and then
normalized by total volume attenuance (Table 2; Fig. 10). In January 2013,
&gt; 96  % of normalized cumulative volume attenuance (NCVA) was found in the
&gt; 1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m size range in CFE data at all depths. In
contrast, BUOY-OSR results typically show less than half of the cumulative
volume attenuance in aggregates larger than 1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m; this is
consistent with the particles being fragments of the larger aggregates and
consistent with the factor of 20 difference in observed attenuance flux. If
we were to eliminate all aggregates larger than 1500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m from January
CFE data, then there is close agreement with the NCVA size distributions
derived from BUOY-OSR data. During the period when current flow across the
BUOY-OSR fell below 2 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, analysis of the BUOY-OSR image shows that
nearly 50 % of the aggregate volume attenuance was in the 2000–5000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, i.e., large, size range. In other words, the surface-tethered OSR
began sampling larger aggregates.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Volume attenuance size distributions for CFE and BUOY-OSR
samples from January 2013.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="12">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right" colsep="1"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right" colsep="1"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right" colsep="1"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right" colsep="1"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Diameter<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry namest="col2" nameend="col3" align="center" colsep="1">144 m CFE </oasis:entry>  
         <oasis:entry namest="col4" nameend="col5" align="center" colsep="1">320 m CFE </oasis:entry>  
         <oasis:entry namest="col6" nameend="col7" align="center" colsep="1">507 m CFE </oasis:entry>  
         <oasis:entry namest="col8" nameend="col10" align="center" colsep="1">237 m BUOY<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry namest="col11" nameend="col12" align="center">237 m BUOY<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">(<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m)</oasis:entry>  
         <oasis:entry namest="col2" nameend="col3" align="center" colsep="1">20130120 11:11 </oasis:entry>  
         <oasis:entry namest="col4" nameend="col5" align="center" colsep="1">20130120 16:42 </oasis:entry>  
         <oasis:entry namest="col6" nameend="col7" align="center" colsep="1">20130120 05:56 </oasis:entry>  
         <oasis:entry namest="col8" nameend="col10" align="center" colsep="1">20130120 AVG. </oasis:entry>  
         <oasis:entry namest="col11" nameend="col12" align="center">20130120 18:08 </oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">&gt; 5000</oasis:entry>  
         <oasis:entry colname="col2">0.462<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">0.462<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">0.000</oasis:entry>  
         <oasis:entry colname="col5">0.000</oasis:entry>  
         <oasis:entry colname="col6">0.776</oasis:entry>  
         <oasis:entry colname="col7">0.776</oasis:entry>  
         <oasis:entry colname="col8">0.000</oasis:entry>  
         <oasis:entry colname="col9">0.000</oasis:entry>  
         <oasis:entry colname="col10"> <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.000</oasis:entry>  
         <oasis:entry colname="col11">0.000</oasis:entry>  
         <oasis:entry colname="col12">0.000</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2000–5000</oasis:entry>  
         <oasis:entry colname="col2">0.441</oasis:entry>  
         <oasis:entry colname="col3">0.903</oasis:entry>  
         <oasis:entry colname="col4">0.978</oasis:entry>  
         <oasis:entry colname="col5">0.978</oasis:entry>  
         <oasis:entry colname="col6">0.150</oasis:entry>  
         <oasis:entry colname="col7">0.926</oasis:entry>  
         <oasis:entry colname="col8">0.065</oasis:entry>  
         <oasis:entry colname="col9">0.065</oasis:entry>  
         <oasis:entry colname="col10"> <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.130</oasis:entry>  
         <oasis:entry colname="col11">0.494</oasis:entry>  
         <oasis:entry colname="col12">0.494</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1000–2000</oasis:entry>  
         <oasis:entry colname="col2">0.059</oasis:entry>  
         <oasis:entry colname="col3">0.962</oasis:entry>  
         <oasis:entry colname="col4">0.000</oasis:entry>  
         <oasis:entry colname="col5">0.978</oasis:entry>  
         <oasis:entry colname="col6">0.055</oasis:entry>  
         <oasis:entry colname="col7">0.981</oasis:entry>  
         <oasis:entry colname="col8">0.353</oasis:entry>  
         <oasis:entry colname="col9">0.418</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.090</oasis:entry>  
         <oasis:entry colname="col11">0.169</oasis:entry>  
         <oasis:entry colname="col12">0.662</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">500–1000</oasis:entry>  
         <oasis:entry colname="col2">0.014</oasis:entry>  
         <oasis:entry colname="col3">0.976</oasis:entry>  
         <oasis:entry colname="col4">0.007</oasis:entry>  
         <oasis:entry colname="col5">0.984</oasis:entry>  
         <oasis:entry colname="col6">0.003</oasis:entry>  
         <oasis:entry colname="col7">0.983</oasis:entry>  
         <oasis:entry colname="col8">0.250</oasis:entry>  
         <oasis:entry colname="col9">0.668</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.070</oasis:entry>  
         <oasis:entry colname="col11">0.153</oasis:entry>  
         <oasis:entry colname="col12">0.815</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">200–500</oasis:entry>  
         <oasis:entry colname="col2">0.015</oasis:entry>  
         <oasis:entry colname="col3">0.992</oasis:entry>  
         <oasis:entry colname="col4">0.005</oasis:entry>  
         <oasis:entry colname="col5">0.989</oasis:entry>  
         <oasis:entry colname="col6">0.011</oasis:entry>  
         <oasis:entry colname="col7">0.994</oasis:entry>  
         <oasis:entry colname="col8">0.245</oasis:entry>  
         <oasis:entry colname="col9">0.913</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.022</oasis:entry>  
         <oasis:entry colname="col11">0.144</oasis:entry>  
         <oasis:entry colname="col12">0.959</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">100–200</oasis:entry>  
         <oasis:entry colname="col2">0.005</oasis:entry>  
         <oasis:entry colname="col3">0.996</oasis:entry>  
         <oasis:entry colname="col4">0.007</oasis:entry>  
         <oasis:entry colname="col5">0.996</oasis:entry>  
         <oasis:entry colname="col6">0.003</oasis:entry>  
         <oasis:entry colname="col7">0.997</oasis:entry>  
         <oasis:entry colname="col8">0.064</oasis:entry>  
         <oasis:entry colname="col9">0.977</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.006</oasis:entry>  
         <oasis:entry colname="col11">0.030</oasis:entry>  
         <oasis:entry colname="col12">0.989</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">50–100</oasis:entry>  
         <oasis:entry colname="col2">0.003</oasis:entry>  
         <oasis:entry colname="col3">0.999</oasis:entry>  
         <oasis:entry colname="col4">0.003</oasis:entry>  
         <oasis:entry colname="col5">0.999</oasis:entry>  
         <oasis:entry colname="col6">0.002</oasis:entry>  
         <oasis:entry colname="col7">0.999</oasis:entry>  
         <oasis:entry colname="col8">0.017</oasis:entry>  
         <oasis:entry colname="col9">0.994</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.001</oasis:entry>  
         <oasis:entry colname="col11">0.008</oasis:entry>  
         <oasis:entry colname="col12">0.997</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">20–50</oasis:entry>  
         <oasis:entry colname="col2">0.001</oasis:entry>  
         <oasis:entry colname="col3">1.000</oasis:entry>  
         <oasis:entry colname="col4">0.001</oasis:entry>  
         <oasis:entry colname="col5">1.000</oasis:entry>  
         <oasis:entry colname="col6">0.001</oasis:entry>  
         <oasis:entry colname="col7">1.000</oasis:entry>  
         <oasis:entry colname="col8">0.006</oasis:entry>  
         <oasis:entry colname="col9">1.000</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.000</oasis:entry>  
         <oasis:entry colname="col11">0.003</oasis:entry>  
         <oasis:entry colname="col12">1.000</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula> Diameter is equivalent circular diameter of particle with the same
area.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Averages (excluding 18:08 data) for BUOY data; third column (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>) is
SD of cumulative data.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> Currents below 3 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for 60 min.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> Fraction of total volume attenuance for indicated size interval.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> Normalized cumulative volume attenuance for particles greater than lower limit of
size interval.</p></table-wrap-foot></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><caption><p>Comparison of normalized cumulative volume attenuance size particle
distribution (NCVA-PSD) for images from CFE and BUOY-OSR systems, January
2013. Over 96 % of the cumulative volume attenuance loading was in the
&gt; 1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m fraction in CFE samples. The BUOY system
images at 11:26 and 18:08 corresponded to times when current velocity above
the mouth of the trap was 6 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and less than 2 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively. The NCVA-PSD for the BUOY-OSR can be matched by eliminating all
of the &gt; 1500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m sized material from the CFE size
distributions.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f10.pdf"/>

        </fig>

      <p>Although BUOY-OSR and CFE were operating at different depths, and were separated
by <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 9 km in our study area (Fig. 1, Table 1), there was no indication
in CTD or optics profiles that there was any discontinuity or advective feature
at 237 m that would lead to biasing the BUOY-OSR results low. Nor was there
any indication in remote sensing imagery (Supplement) of nearby
fronts or eddy structures. Furthermore, spatial chlorophyll variability was
less than 20 % in our study area (Appendix Sect. A3).</p>
      <p>Figure 11 shows CFE NCVA-PSDs from all three expeditions compared with
January BUOY-OSR data and further demonstrates that the CFE captured a
greater loading of large particles than the BUOY-OSR. All lines of evidence
indicate a major bias against aggregates larger than millimeter in size by
the surface-tethered BUOY-OSR.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>POC flux estimates</title>
      <p>In the absence of calibration sample data, calculations based on particle
geometry, thickness, dry-weight density, and organic-matter percentages
(Sect. 2.3 based on Bishop et al., 1978) yield a scaling factor of 2.8, which can
be used to convert the optical POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux
(mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to POC flux (mmol m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. POC flux was thus estimated
to be 190, 240, and 100 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in January 2013 (at 144,
320, and 506 m), <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 18 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in March 2013 (from
170 to 508 m), and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 6 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in May 2012
(430 to 900 m). We similarly estimate <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at 237 m during the January 2013 BUOY-OSR deployment.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><caption><p>Comparison of normalized cumulative volume attenuance particle size
distributions (NCVA-PSD) from CFE deployments in May 2012 (red lines and
symbols), January 2013 (blue), and March 2013 (green). Shown in black is the
average NCVA-PSD from BUOY-OSR deployments. No CFE data from any of the three
expeditions overlapped BUOY-OSR results from January 2013; in all cases,
larger particles were observed by the CFE.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f11.pdf"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <title>Surface biomass and export in coastal waters</title>
      <p>The high January 2013 POC flux values of 190 and 240 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to depths of 144 and 320 m are remarkable from several
perspectives. Firstly, cases where the imaging stage was almost completely
covered with material in 1.8 h had been never before encountered in our
previous deployments of CFEs for missions totalling over 100 days (mostly in
summer time conditions). Secondly, these high particle accumulation rates
were observed in the wintertime at a time when both remotely sensed and
in-water optical measures of particle stocks were low. Thirdly, the
magnitude of the January 2013 POC flux, estimated from CFE data, was
approximately 8 times higher than the highest sedimentation rates measured
using surface-tethered (at 100 and 200 m) and moored sediment traps (near
500 m) in the nearby Santa Barbara (Thunnel, 1998; August 1993 to September
1996) and San Pedro basins (Collins et al., 2011; January 2004 through
December 2007). In both these studies, POC fluxes in moored trap samples
collected over 4 years at a depth of 500 m were typically 3 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, with rare values as high as 15 mmol m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The much
sparser surface-tethered trap observations (Collins et al., 2011) were no higher
than 28 mmol C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The finding of a high sedimentation rate
during wintertime low-biomass conditions in California coastal waters has
not been reported in the multiyear moored sediment trap observations.</p>
      <p>The May 2012 fluxes of 6 mmol m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> observed by CFE were the
lowest of the study, at a time when surface waters had high particle
concentrations, thus implying high recycling and shallow remineralization.
The finding of low export beneath plankton blooms in coastal waters
reinforces the findings in the open ocean that high surface biomass
does not imply high export to depth (Bishop and Wood, 2009; Lam and Bishop
2007; Ebersbach et al., 2011).</p>
      <p>The low surface biomass observed in January 2013 could indicate either a
state of nutrient limitation of photosynthesis or a state of efficient
transfer of primary produced organic matter to grazers and efficient
particle export through the upper 500 m. We rule out nutrient limitation in
our case, as mixed layers consistently shallower than 10 m and surface
temperatures of 12.5 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C indicated that upwelling conditions were
prevalent. Furthermore, we observed intense activity of marine mammals and
sea birds feeding on abundant macro-invertebrates and fish during this
period – which suggests that consumers were the source of the sinking
aggregated material in the water column at this time. Many of the large
aggregates seen in both January and March 2013 closely resemble abandoned
appendicularian houses described by Alldredge and Silver (1988). Animations
of CFE imagery are provided in the Supplement for further
exploration.</p>
      <p>Physically driven aggregative processes were not likely in January and March
2013, as winds were below 5 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and averaged 2.5 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. In May
2012, winds were below 10 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and averaged 3 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Surface
waves and swell were almost completely absent in January and March. Acoustic Doppler current profiler
(ADCP) records showed that currents were dominated by tidal fluctuations and not by eddy
structures. The low biomass condition observed in January is therefore most
consistent with biologically mediated export.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p>Martin curve fit parameters.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.88}[.88]?><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Time</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">Φ</mml:mi><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow><mml:mn mathvariant="normal">1</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">SD<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Φ</mml:mi><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">SD</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(m)</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Jan 2013</oasis:entry>  
         <oasis:entry colname="col2">50</oasis:entry>  
         <oasis:entry colname="col3">252.0</oasis:entry>  
         <oasis:entry colname="col4">0.858</oasis:entry>  
         <oasis:entry colname="col5">34.7</oasis:entry>  
         <oasis:entry colname="col6">115.0</oasis:entry>  
         <oasis:entry colname="col7">0.36</oasis:entry>  
         <oasis:entry colname="col8">23.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Mar 2013</oasis:entry>  
         <oasis:entry colname="col2">20</oasis:entry>  
         <oasis:entry colname="col3">57.5</oasis:entry>  
         <oasis:entry colname="col4">0.858</oasis:entry>  
         <oasis:entry colname="col5">2.3</oasis:entry>  
         <oasis:entry colname="col6">11.4</oasis:entry>  
         <oasis:entry colname="col7">0.22</oasis:entry>  
         <oasis:entry colname="col8">0.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">May 2012</oasis:entry>  
         <oasis:entry colname="col2">25</oasis:entry>  
         <oasis:entry colname="col3">35.0</oasis:entry>  
         <oasis:entry colname="col4">0.858</oasis:entry>  
         <oasis:entry colname="col5">1.0</oasis:entry>  
         <oasis:entry colname="col6">3.8</oasis:entry>  
         <oasis:entry colname="col7">0.17</oasis:entry>  
         <oasis:entry colname="col8">0.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.88}[.88]?><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula> Units are in
mATN cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p></table-wrap-foot><?xmltex \end{scaleboxenv}?></table-wrap>

      <p>We note that the 5-day running mean of satellite chlorophyll and POC levels
appears to be nearly halved in a week (Fig. 6a, b), just before the study
period in January. The decrease suggests that active grazing and export were
in progress. Satellite imagery from January 2013 (Supplement) shows
a patchy POC and chlorophyll distribution without obvious eddy structures or
fronts nearby.</p>
      <p>Our observations show that POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux profiles (Fig. 6) attenuate with
depth, albeit not following the classic Martin et al. (1987) curve fit
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">Φ</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">Φ</mml:mi><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>/(<inline-formula><mml:math display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula>/<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi>b</mml:mi></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> is depth, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 100 m, <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Φ</mml:mi></mml:math></inline-formula> is flux, and <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.858). Using light-based euphotic depths of 50,
20, and 25 m for January, March, and May as the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values for particle
remineralization (Buesseler and Boyd, 2009), we derive Martin's “<inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>” factors
of 0.36, 0.22, and 0.17, respectively, far lower than the accepted <inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> value
(Table 3). There are multiple limitations to this exercise; these include
likely temporal variation of flux at a particular depth with time of day
(see, e.g., Fig. 15 in Bishop et al., 1987), depths sampled being 100 m deeper
than the base of the euphotic zone, and the limited time of the study. That said, it is clear that in January 2013, the export may have been high enough
to overwhelm the capacity of detritus feeders to reduce the flux. In May and
March, all evidence is consistent with high recycling of the sinking POC in
waters shallower than our 400 and 125 m observation points, respectively.</p>
      <p>The fact that the PIC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POC ratio can decrease with depth suggests that
carbonate dissolution may occur in shallow waters of the Pacific, a finding
consistent with Bishop and Wood (2008). Also, we note that living
foraminifera and empty foraminifera shells were predominantly associated
with large aggregates in January. While the occurrence of empty shells in
aggregates would not be exceptional, the finding of living foraminifera
suggests an active association with these particles.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Surface-tethered BUOY-OSR vs. Lagrangian CFE fluxes</title>
      <p>Our comparison of fluxes recorded by the CFE and a surface-tethered BUOY-OSR
in January 2013 found a factor of 20 difference in collection rate (Figs. 8 and 9),
consistent with the loss of all aggregates &gt; 1500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in
size. CFE collection rates, ignoring the &gt; 1500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m
fraction in March 2013 and May 2012, would be approximately 4 times lower
and 3 times lower, respectively (Fig. 11). This was surprising in light of
reports that there are less than “factor of 2” differences in
sedimentation measured using surface-tethered particle interceptor traps
(Martin et al., 1987; PITS) and neutrally buoyant sediment traps (NBST)
deployed in oligotrophic waters near Bermuda (Buesseler et al., 2000; Stanley et al.,
2004; Owens et al., 2013). In our study, the particles mostly absent from the
BUOY-OSR were large aggregates in the millimeter to centimeter size class (Figs. 9,
10, 11). The only time when large aggregates appeared in the BUOY-OSR
imagery was during periods when the flow of water across the mouth of the
BUOY-OSR was below 2 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 8). Given that marine-snow aggregates
typically settle at rates of 0.1–0.2 cm s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Alldredge and
Silver, 1988), the trajectory of the aggregates across the BUOY-OSR funnel
would be almost horizontal, even in currents as weak as 2 cm s.<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> The large
aggregates are thus likely discriminated against entering the centimeter-sized trap
baffle openings, which are of the same size as the particles and we
hypothesize that the aggregates simply bounce back into the flow after
shedding a few fragments, rather than entering the trap.</p>
      <p>Further support for a higher coastal sedimentation than is presently
recognized is provided by Stukel et al. (2011), who worked just offshore of
our study area in the California Current. They compared the new
production (Eppley and Peterson, 1979) “<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratio” (the fraction of
primary production supported by upwelled nitrate) to the <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>234</mml:mn></mml:msup></mml:math></inline-formula>Th
disequilibrium-based “<inline-formula><mml:math display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> ratio” (the fraction of primary production
exported as particles), and the two should be equivalent in a food web in
equilibrium. While methods agreed 300 km offshore, the <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratio exceeded
the <inline-formula><mml:math display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> ratio by factors of 5–7 at locations within 50 and 100 km from the
coast. Simply stated, there is insufficient time for the <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>234</mml:mn></mml:msup></mml:math></inline-formula>Th (half
life 24 days) deficit relative to its parent <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>238</mml:mn></mml:msup></mml:math></inline-formula>U to reach steady state
in coastal waters. Subsequent surface-tethered particle interceptor trap
deployments (Stukel et al., 2013) in the same area showed consistently low
exports in this region where <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios are typically high (Eppley and
Peterson, 1979). Our location is closer to shore. Even taking into account
factors such as food web and lateral transport processes, multiple lines of
evidence strongly indicate that large &gt; 1 mm sized aggregates
are severely undersampled by surface-tethered baffled traps.</p>
      <p>It is important to note that sediment traps have been the sole method to
date for the assessment of carbon export in coastal waters. The single
profile <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>234</mml:mn></mml:msup></mml:math></inline-formula>Th <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>238</mml:mn></mml:msup></mml:math></inline-formula>U method is not applicable in the coastal
environment since it relies on an assumption of a steady-state deficit and
requires a timescale of multiple half-lives (24.1 d) to reach this
condition. Although the <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>234</mml:mn></mml:msup></mml:math></inline-formula>Th <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>238</mml:mn></mml:msup></mml:math></inline-formula>U method may be used to infer
export from time series sampling of a water parcel, such a study has not
been undertaken in nearshore California waters to our knowledge. Also,
<inline-formula><mml:math display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula>-ratio estimates are calibrated with large particles sampled either using
traps or pumps and the assumption is that the Th : C ratio of all large
particle phases is the same. Both methods have been shown to have large biases; in situ pumps are discussed by Bishop et al. (2012), and
results presented here show undersampling of large
aggregates by surface-tethered baffled traps. As there is scant literature
on the size dependence of Th–C in different large particle size classes in
the coastal environment, it is thus impossible to know the accuracy of
<inline-formula><mml:math display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula>-ratio export estimates.</p>
      <p>Coordinated at-sea studies are required to intercompare the various methods
of measurement of carbon export.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p>The new continuous observations of particulate flux off the coast of
southern California by autonomous CFEs show high fluxes in winter when
surface chlorophyll is low. The finding is consistent with high primary
productivity, efficient grazing, and high export of resulting aggregate
material. The finding is also consistent with Eppley and Peterson's (1979)
estimate of high new production and their inferred strength of particle
export in nearshore waters and, as noted above, is higher by a factor of
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 8 than the highest observations made with surface-tethered
and moored sediment traps in waters close to our study site. Analysis of the
images of accumulated particles suggests that surface-tethered sediment traps under-sample a major class of large aggregates contributing to carbon
export from surface waters. At the time of writing, it is premature to revise the
carbon export attributable to coastal waters up by a factor of 20 as we do
not yet know the year-round contribution of large aggregates to
sedimentation. In other seasons, our POC flux estimates are closer – but
still elevated by greater than a factor of 2 compared with moored traps and likely a minimum of a factor of 3 based on discussion of size
frequency distribution results presented in Sect. 4.1. Missing contributions
of large aggregates in sediment trap collections may explain the reported
imbalance between POC flux to the seafloor and benthic respiratory demand
seen at a nearby station M (34<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>50<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N, 123<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>00<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; Smith et al.,
2013). We also show that particulate fluxes estimated using remotely sensed
surface biomass may be overestimated sometimes or underestimated at other
times, depending on the population of grazers and the efficiency of export.
The CFE can provide “ocean truth” for such estimates.</p>
      <p>There is uncertainty in the conversion of POC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>ATN</mml:mtext></mml:msub></mml:math></inline-formula> flux to POC flux, and
we have no data on the conversion of PIC<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POL</mml:mtext></mml:msub></mml:math></inline-formula> to PIC flux; however, the
optical metrics of POC and PIC flux are robustly defined for the CFE, and the
resulting images of settled particles clearly provide evidence of the food
web mechanisms governing carbon export. Better calibration can only be
achieved by at-sea 24 h deployments of CFEs modified to collect samples;
we hope to report on upcoming deployments soon.</p>
      <p>While CFE and BUOY-OSRs were not directly compared to fluxes measured
simultaneously with PIT traps and thorium methods and to large particle
abundances sampled by large volume in situ filtration and other methods, such
a study should be undertaken in biologically dynamic waters and augmented by
a framework of contemporaneous remote sensing observations, water column
biology, and physics.</p>
      <p>To date, two CFEs have each completed missions lasting 40 days offshore of
California and another 10 days in the waters in the subarctic Pacific
(mission duration set by ship availability) in bad weather and sea states and without biofouling issues; our lab tests show that a CFE can perform
hourly observations of carbon export in the open ocean for 8 months (2-hourly frequency for 16 months, etc.). More work to enable onboard image data analysis is required to render the CFE fully autonomous.</p>
      <p>Near shore, horizontal currents can displace a CFE from the area of intended
operation in several days' time; thus, longer time series observations are
difficult without a means to reposition the CFE. As the cost of a CFE is
equivalent to the cost of operating a mid-size research vessel for <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2–3 days, the job of tending CFEs for seasonal or year-round studies in the
coastal environment would need to be done using autonomous surface or
underwater vehicles.</p>
      <p>In summary, we show that autonomous sampling technologies may be deployed to
address many questions about the workings of the biological pump both
offshore and onshore, including whether or not its strength has changed over
the past several decades and whether or not it will change in the future in
the face of anthropogenic CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> warming and acidification and the exploitation of living resources of the ocean.</p>
<sec id="Ch1.S5.SSx1" specific-use="unnumbered">
  <title>Data availability</title>
      <p>Data for plots, representative images used in this paper, and animations of
image time series (at <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> resolution) are available as Supplement and are
available from the author on request. Shipboard data sets, including
meteorological, surface hydrography, and CTD cast data, were contributed to
the Rolling Deck to Repository (R2R) program (<uri>http://www.rvdata.us</uri>)
archives or, in the case of ADCP data, are available
through the University of Hawaii.</p><?xmltex \hack{\clearpage}?>
</sec>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <title>Method details</title>
<sec id="App1.Ch1.S1.SS1">
  <title>Optical sedimentation recorder on CFE</title>
      <p>The optical sedimentation recorder (OSR; Fig. A1) is independently powered from the
SOLO float to which it is attached, and the two communicate via a hardwired
link. It thus does not impact the number of profiles that the float can make
beyond additional telemetry needs.</p>
      <p>The SOLO dives to its target depth and signals to the OSR to begin operation.
During time at depth, particles settle into a baffled (5 cm
thick <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1 cm opening hex cell) high-aspect polished titanium funnel
(height 23.6 cm; slope 75<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>; 15.4 cm diameter opening) and settling
column (height <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 11 cm) before depositing on a 2.5 cm diameter glass
sample stage. The baffle is typical for the dimensions used in
surface-tethered particle interceptor traps (e.g., Martin et al., 1987;
Collins et al., 2011; Stukel et al., 2013).</p>
      <p>A downward focused 5 cm diameter white (color temperature 2700 K) light-emitting diode (LED) source with bonded linear polarizer (Meadowlark Optics,
Frederick, CO) is axially aligned with the funnel and provides transmitted
light (or backlit) illumination of the sample.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F1"><caption><p>Drawing depicting the configuration of CFE001 and detail of
lighting and imaging elements of the OSR.
During operation, the OSR uses a three-axis accelerometer to monitor system
tilt.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f12.png"/>

        </fig>

      <p>An annular array of 12 white LEDs provides dark field illumination. This
light source is integrated within the body of a 3-D printed form designed to
provide both a hydrodynamic cleaning function and to secure a 27 mm diameter
dashed cross-hair reticle (Edmond Optics Inc., Barrington, NJ) to the
pressure case window. A Seabird Inc. (Bellevue, WA) pump outfitted with an
isolation valve is used to flush the sample stage during cleaning.</p>
      <p>A substage polarizer rotator is rotated either parallel or perpendicular to
the axis of the downlight polarizer. In the case of CFE001, this polarizer
rotator was housed within the instrument pressure case.</p>
      <p>Under computer control, particles are imaged with a 5M pixel Sumix
(SMX-11M5C; Oceanside, CA) color imager in transmitted, transmitted–cross polarized, and dark field lighting modes, which are designated as TRA,
POL, and DRK, respectively. Gain settings for each of the red, green, and blue (RGB)
channels were adjusted so that images of the downlight yield similar count
value histogram averages (to within several percentage points). The same gain settings
were used for cross-polarized transmitted light illumination. For dark
field, RGB channel balance was achieved by imaging salt crystals dispersed
across the sample stage. The camera lens was set to F16. Shutter timing was
set for each of the three modes to prevent image saturation.</p>
</sec>
<sec id="App1.Ch1.S1.SS2">
  <title>Surface conditions, hydrography, and transmissometer data</title>
      <p>Sea and wind conditions during the three study periods were benign. For
example, in January and March 2013, winds monitored by the ship were less than 5 and averaged 2.5 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. In May 2012, winds were less
than 10 and averaged 3 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Surface waves and swell were almost
completely absent in January and March. In January 2013, the weather was
completely cloud free which contributed to excellent satellite imagery of
the area.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F2"><caption><p>Panels <bold>(a–c)</bold>: particle beam attenuation coefficient (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> profiles corresponding to NH1301 (January 2013), NH1304
(March 2013), and NH1204 (May/June 2012) expeditions. Panel <bold>(d)</bold>: POC calculated for
the 0–20 m depth interval using <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> multiplied by
27. The <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis shows days relative to the start of each CFE deployment.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f13.png"/>

        </fig>

      <p>During all expeditions, a CTD–rosette system with a C-Star (WETLabs, Inc.
Philomath, OR) transmissometer and Seapoint Inc. scattering sensor was
repeatedly deployed to full water column depth. Approximately 20 casts were
completed during each cruise. Only transmissometer data are reported here.
The transmissometer cleaning, calibration, and data processing to particle
beam attenuation coefficient (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> follow protocols
we have published (Bishop and Wood, 2008; Bishop et al., 2012). POC
was calculated by multiplying the particle beam attenuation coefficient by 27
(Bishop and Wood, 2008).</p>
      <p>Figure A2a–c shows <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> profiles for the three
expeditions. Also shown is 0–20 m averaged POC from these casts. The time
line for plot (d) is relative to the start of deployment of the CFE. Average
and standard deviation values of 0–20 m averaged POC are quoted in the text.</p>
      <p>The effects of internal waves with periods of 20–30 min were usually seen
in CTD cast data. In March 2013, internal wave amplitudes of approximately
40 m were observed during CTD profiles to 35 m, repeated every 10 min
without recovery. . During other expeditions, wave amplitudes were less than
20 m.</p>
</sec>
<sec id="App1.Ch1.S1.SS3">
  <title>Spatial gradients of surface chlorophyll in the study area</title>
      <p>To examine the detailed spatial gradients of chlorophyll in our study area,
we chose locations at 33.73<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 119.50<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W and
33.69<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 119.58<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W and retrieved chlorophyll data at 1 km spatial resolution within a 2 km search radius of the two locations.
These positions were 9 km apart. To achieve greater temporal and spatial
coverage than possible with the single MODIS–Aqua product, we analyzed
merged data from MODIS on the Aqua and Terra satellites and from the Visible
Infrared Imaging Radiometer Suite (VIIRS) on the National Polar-orbiting
Partnership Suomi satellite (Kahru et al., 2012;
<uri>http://spg.ucsd.edu/Satellite_Data/California_Current/</uri>). Images at 1 km resolution are provided in the Supplement.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F3" specific-use="star"><caption><p>Left panels: means and standard deviations of chlorophyll <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
retrieved from 1 km spatially resolved merged MODIS Aqua and Terra and VIIRS
Sumoi products within 2 km radius of 33.73<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 119.50<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W (red triangles) and
33.69<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 119.58<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W (blue circles). Top to bottom: graphs correspond to times of
sampling. The 1 km results are raw merged products. The data indicated by “?” are incongruent with the rest of the time series. Dashed blue lines denote the periods that the ship was on station
in the Santa Cruz Basin study area. The black horizontal line denotes
duration of CFE deployments. Right panels show the fractional difference in
mean chlorophyll between the two locations. There was no systematic
difference between locations.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f14.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F4"><caption><p>Photograph of the surface-tethered BUOY-OSR as deployed in
January 2013. Also shown is the mooring configuration used in this study.
The seven small floats spaced 1 m apart are intended to minimize the effects
of surface wave action on the up and down motion of the subsurface sediment
trap. During the January 2013 deployment, depth was 237 m (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.25 m SD); maximum peak to trough vertical motion was 1 m.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3109/2016/bg-13-3109-2016-f15.png"/>

        </fig>

      <p><?xmltex \hack{\newpage}?>Figure A3 shows time series of daily mean and standard deviation of
chlorophyll plotted for both locations over 30-day periods encompassing
the days that the ship was on station in the Santa Cruz Basin and during CFE
deployments. Also plotted is the relative difference in chlorophyll between
the two locations. The two locations were almost always &lt; 20 %
different from one another. From this we conclude that a separation of 9 km is not a significant cause of differences in CFE vs. BUOY-OSR results. In other
words, spatial gradients of biomass in our study area were small.</p>
</sec>
<sec id="App1.Ch1.S1.SS4">
  <title>BUOY-OSR configuration, January 2013</title>
      <p>Figure A4 depicts the deployment configuration of the sample-collecting
BUOY-OSR used in this study. An SBE 19-plus logging CTD (Sea Bird
Electronics, Bellevue, WA) recorded pressure, temperature, and salinity at 5 s intervals. One OSR (Buoy instrument 84) was configured identically to
CFE001. The funnel assembly of the second OSR (Buoy instrument 88) had a
sample stage leak enabling strong water circulation through the funnel
leading to particle loss as the system was pumped up and down due to wave
action. Buoy instrument 84 is considered reliable as particles remained in
place where they fell as they accumulated.</p><?xmltex \hack{\clearpage}?><supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-13-3109-2016-supplement" xlink:title="zip">doi:10.5194/bg-13-3109-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
</sec>
</app>
  </app-group><notes notes-type="authorcontribution">

      <p>James K. B. Bishop initiated the CFE program, was chief scientist at sea, and led the
analysis and writing of this paper. Todd J. Wood played a key engineering role in all
aspects of the development, deployment, programming, and operation of the CFE.
Michael B. Fong analyzed MODIS Aqua and Terra and VIIRS satellite data.</p>
  </notes><ack><title>Acknowledgements</title><p>The CFE was developed in close collaboration with Mike McClune and Russ Davis of the Scripps Institution of Oceanography Instrument Development
Group. OSR design and construction had critical contributions from the
Electrical and Mechanical engineering groups and machine shop facilities at
Lawrence Berkeley National Laboratory. Alex Morales (LBNL) and 25 UC
Berkeley undergraduates facilitated CFE and BUOY-OSR deployments and
recoveries at sea. In particular, Gabrielle Weiss, Amelia Weiss, Andrew Bower, and Christina Hamilton contributed both at sea and in the laboratory;
we also thank the resident technicians, crews, and captains of the R/V <italic>New Horizon</italic> for assistance. Jules Hummon (U Hawaii) assisted with ADCP data
reprocessing. Hannah Bourne (UC Berkeley) cross-checked ADCP and BUOY-OSR
current shear calculations. We thank Mati Kahru (SIO) for access to
kilometer-scale chlorophyll data for our study area. We thank the three
anonymous reviewers for their contributions. The CFE data sets and animated
image videos are posted as a Supplement. Undergraduate
participation in cruises was facilitated by the UC Berkeley Undergraduate
Research Apprentice Program and by the Earth and Planetary Science
Department Ramsden fund. All work reported here was sponsored by National
Science Foundation grant OCE-0936143 (JKBB).
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: E. Marañón</p></ack><ref-list>
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  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Robotic observations of high wintertime carbon export in California coastal
waters</article-title-html>
<abstract-html><p class="p">Biologically mediated particulate organic and inorganic carbon (POC and PIC)
export from surface waters is the principal determinant of the vertical
oceanic distribution of pH and dissolved inorganic carbon and thus sets the
conditions for air–sea exchange of CO<sub>2</sub>; exported organic matter also
provides the energy fueling communities in the mesopelagic zone. However,
observations are temporally and spatially sparse. Here we report the first
hourly-resolved optically quantified POC and PIC sedimentation rate time
series from an autonomous Lagrangian Carbon Flux Explorer (CFE), which
monitored particle flux using an imaging optical sedimentation recorder (OSR)
at depths below 140 m in the Santa Cruz Basin, CA, in May 2012, and in
January and March 2013. Highest POC vertical flux
( ∼  100–240 mmol C m<sup>−2</sup> d<sup>−1</sup>) occurred in January, when
most settling material was millimeter- to centimeter-sized aggregates but
when surface biomass was low; fluxes were  ∼  18 and
 ∼  6 mmol C m<sup>−2</sup> d<sup>−1</sup>, respectively, in March and May, under
high surface biomass conditions. An unexpected discovery was that January
2013 fluxes measured by CFE were 20 times higher than that measured by
simultaneously deployed surface-tethered OSR; multiple lines of evidence
indicate strong undersampling of aggregates larger than 1 mm in the latter
case. Furthermore, the January 2013 CFE fluxes were about 10 times higher
than observed during multiyear sediment trap observations in the nearby Santa
Barbara and San Pedro basins. The strength of carbon export in biologically
dynamic California coastal waters is likely underestimated by at least a
factor of 3 and at times by a factor of 20.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Alldredge, A. L.: The carbon, nitrogen, and mass content of marine snow as a function of aggregate size, Deep-Sea Res. Pt. I, 45, 52–541,
1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Alldredge, A. L. and Silver, M. W.: Characteristics, dynamics and significance
of marine snow, Prog. Oceanogr., 20, 41–82, 1988.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Armstrong, R. A., Lee, C., Hedges, J. I., Honjo, S., and Wakeham, S. G.: A new
mechanistic model for organic carbon fluxes in the ocean based on
quantitative association of POC with ballast minerals, Deep-Sea Res. Pt. II., 49, 219–236, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Asper, V. L.: Measuring the flux and sinking speed of Marine Snow Aggregates,
Deep-Sea Res., 34, 1–17, 1987.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Banse, C.: Reflections About Chance in My Career, and on the Top-Down
Regulated World, Annu. Rev. Mar. Sci., 5, 1–19, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
Bé, A. W. H., Bishop, J. K. B., Sverdlove, M. S., and Gardner, W. D.: Standing
Stock, Vertical Distribution, and Flux of Planktonic Foraminifera in the
Panama Basin, Mar. Micropaleontol., 9, 307–333, 1985.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
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