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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-3793-2016</article-id><title-group><article-title>Dynamics of transparent exopolymer particles (TEP) during the VAHINE mesocosm
experiment in the New Caledonian lagoon</article-title>
      </title-group><?xmltex \runningtitle{Dynamics of TEP during the VAHINE experiment, New Caledonia}?><?xmltex \runningauthor{I. Berman-Frank et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Berman-Frank</surname><given-names>Ilana</given-names></name>
          <email>ilana.berman-frank@biu.ac.il</email>
        <ext-link>https://orcid.org/0000-0003-3497-1844</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Spungin</surname><given-names>Dina</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Rahav</surname><given-names>Eyal</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Van Wambeke</surname><given-names>France</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Turk-Kubo</surname><given-names>Kendra</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Moutin</surname><given-names>Thierry</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1297-8893</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, 5290002, Israel</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>National Institute of Oceanography, Israel Oceanographic and Limnological Research, Haifa, 31080, Israel</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Aix Marseille Université, CNRS/INSU, Université de Toulon, IRD, Mediterranean Institute of Oceanography (MIO) UM110, 13288,
Marseille, France</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Ocean Sciences Department, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Ilana Berman-Frank (ilana.berman-frank@biu.ac.il)</corresp></author-notes><pub-date><day>1</day><month>July</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>12</issue>
      <fpage>3793</fpage><lpage>3805</lpage>
      <history>
        <date date-type="received"><day>29</day><month>November</month><year>2015</year></date>
           <date date-type="rev-request"><day>18</day><month>January</month><year>2016</year></date>
           <date date-type="rev-recd"><day>1</day><month>May</month><year>2016</year></date>
           <date date-type="accepted"><day>5</day><month>May</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/.html">This article is available from https://bg.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>In the marine environment, transparent exopolymeric particles (TEP) produced
from abiotic and biotic sources link the particulate and dissolved carbon
pools and are essential vectors enhancing vertical carbon flux. We
characterized spatial and temporal dynamics of TEP during the VAHINE
experiment that investigated the fate of diazotroph-derived nitrogen and
carbon in three replicate dissolved inorganic phosphorus (DIP)-fertilized
50 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> enclosures in the oligotrophic New Caledonian lagoon. During
the 23 days of the experiment, we did not observe any depth-dependent changes
in TEP concentrations in the three sampled depths (1, 6, 12 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>).
TEP carbon (TEP-C) content averaged <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>28.9</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>±</mml:mo><mml:mn> 9.3</mml:mn></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>27.0</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>±</mml:mo><mml:mn> 7.2</mml:mn></mml:mrow></mml:math></inline-formula> % of total organic carbon (TOC) in the mesocosms and
surrounding lagoon respectively and was strongly and positively coupled with
TOC during P2 (i.e., days 15–23). TEP concentrations in the mesocosms
declined for the first 9 days after DIP fertilization (P1 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> days 5–14)
and then gradually increased during the second phase. Temporal changes in TEP
concentrations paralleled the growth and mortality rates of the
diatom–diazotroph association of <italic>Rhizosolenia</italic> and <italic>Richelia</italic>
that predominated the diazotroph community during P1. By P2, increasing total
primary and heterotrophic bacterial production consumed the supplemented P
and reduced availability of DIP. For this period, TEP concentrations were
negatively correlated with DIP availability and turnover time of DIP
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>), while positively associated with enhanced alkaline
phosphatase activity (APA) that occurs when the microbial populations are
P stressed. During P2, increasing bacterial production (BP) was positively
correlated with higher TEP concentrations, which were also coupled with the
increased growth rates and aggregation of the unicellular cyanobacterial
Group C (UCYN-C) diazotrophs that bloomed during this period. We conclude
that the composite processes responsible for the formation and breakdown of
TEP yielded a relatively stable TEP pool available as both a carbon source
and facilitating aggregation and flux throughout the experiment. TEP were
probably mostly influenced by abiotic physical processes during P1, while
biological activity (BP, diazotrophic growth and aggregation, export
production) mainly impacted TEP concentrations during P2 when DIP
availability was limited.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>The cycling of carbon (C) in the oceans is a complex interplay
between physical, chemical, and biological processes that regulate the input
and the fate of carbon within the ocean. An essential process driving the
flux of carbon and other organic matter to depth, and enabling long-term
sequestration and removal of carbon from the atmosphere, is the biological
pump that drives organic C formed during photosynthesis to the deep ocean.
This process, termed export production (Eppley and Peterson, 1979), is
facilitated via physical inputs of “new” nutrients (e.g., nitrogen,
phosphorus, silica, trace metals) into the euphotic zone from either external
sources (deep mixing of upwelled water, river discharge, dust deposition, and
anthropogenic inputs) or via biological processes. One such process is
microbial <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation that converts biologically unavailable
dinitrogen (<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) gas into bioavailable forms of nitrogen and enhances
the productivity of oligotrophic oceanic surface waters that are often
limited by nitrogen (Capone, 2001; Falkowski, 1997).</p>
      <p>Marine <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation is performed by diverse prokaryotic organisms
comprised predominantly of autotrophic cyanobacteria and heterotrophic
bacteria (Zehr and Kudela, 2011). To supply the energetically expensive
process of converting <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to ammonia (Mulholland and Capone, 2000;
Postgate and Eady, 1988; Stam et al., 1987), these organisms must obtain
energy from either photosynthesis (cyanobacteria) or from bioavailable
organic carbon compounds within the aquatic milieu (heterotrophic bacteria
and mixotrophs). The total organic carbon (TOC) in the ocean contains dynamic
particulate organic carbon (POC) and dissolved organic carbon (DOC) pools.
These are supplied by biotic sources and are broken down into organic
C-containing marine microgels which include transparent polymeric particles
(TEP). TEP are predominantly acidic polysacchridic organic particles
ranging in size from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.45 to <inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 300 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and are found in
both marine and freshwater habitats (Passow, 2002). Both biotic and abiotic
processes form aquatic TEP that are routinely detected by staining with
Alcian Blue (Alldredge et al., 1993; Passow and Alldredge, 1995). Abiotic
TEP occur by coagulation of colloidal precursors in the pool of dissolved
organic matter (DOM) and from planktonic debris (Passow, 2002; Verdugo and
Santschi, 2010) that may be stimulated by turbulence or by bubble adsorption
(Logan et al., 1995; Passow, 2002; Zhou et al., 1998). Biotically TEP form
from extracellular secretion or mucilage in algae and bacteria and from
grazing and microbial breakdown of larger marine snow particles (reviewed in
Bar-Zeev et al., 2015; Passow, 2002).</p>
      <p>TEP are light and buoyant (Azetsu-Scott and Passow, 2004); yet, once formed,
TEP sticky nature enhances and consolidates the formation of larger
aggregates such as marine/lake snow, providing favorable environments for
diverse microorganisms (Engel, 2004; Passow, 2002). Sedimentation of
TEP-associated hot spots from the surface are important for transporting
particulate organic material and microorganisms to deeper waters (Azam and
Malfatti, 2007; Bar-Zeev et al., 2009; Smith and Azam, 1992). During
sedimentation, TEP can also function as a direct source of carbon and other
nutrients for higher trophic level organisms such as protists,
micro-zooplankton, and nekton (Engel, 2004; Passow, 2002).</p>
      <p>TEP production can be enhanced in late phases of algal blooms and in
senescent or nutrient-stressed phytoplankton (Berman-Frank et al., 2007;
Engel, 2004; Grossart et al., 1997; Passow, 2002). Thus, TEP in oligotrophic
waters provide a source of available carbon to fuel microbial food webs (Azam
and Malfatti, 2007) that typically succeed autotrophic blooms. TEP-based
aggregates or marine-snow-containing TEP typically have high carbon
(C) <inline-formula><mml:math display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> nitrogen (N) ratios (Berman-Frank and Dubinsky, 1999; Wood and Van
Valen, 1990), which can also fuel <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation by heterotrophic
diazotrophs (Benavides et al., 2015; Rahav et al., 2013).</p>
      <p>The VAHINE project was designed to examine the fate/s of “newly” fixed N by
diazotrophs or diazotroph-derived N in the pelagic food web using large
mesocosms in the oligotrophic tropical lagoon of New Caledonia where diverse
diazotrophic populations have been observed (Biegala and Raimbault, 2008;
Bonnet et al., 2016b; Dupouy et al., 2000; Garcia et al., 2007; Rodier and Le
Borgne, 2008, 2010). One of the major questions addressed during VAHINE was
whether diazotroph blooms significantly modify the stocks, fluxes, and ratios
of biogenic elements (C, N, P, Si) and the efficiency of carbon export. To
this end, the three large-volume (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) mesocosms
containing ambient lagoon waters were fertilized with
0.8 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> dissolved inorganic phosphorus (DIP), and
multiple parameters were measured inside and outside of the mesocosms for
23 days (details of parameters and experimental setup in Bonnet et
al., 2016b). Within the VAHINE framework, our specific objectives were as
follows: (1) to examine the spatial and temporal dynamics of TEP; (2) to
determine whether TEP content was regulated by nutrient status in the
mesocosms – specifically DIP availability; (3) to examine the relationship
between TEP content, particulate and dissolved carbon, and primary or
heterotrophic bacterial production; and (4) to elucidate whether TEP
provided a source of energy for diazotrophs/bacteria/mixotrophs
in mesocosms.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Study site, mesocosm description, and sampling strategy</title>
      <p>Three large-volume (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) mesocosms were deployed at the
exit of the oligotrophic New Caledonian lagoon
(22<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>29.10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S–166<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>26.90<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E), from 13 January 2013
(day 1) to 4 February 2013 (day 23). The complete description of the mesocosm
design and deployment, as well as the sampling strategy, is detailed in
Bonnet et al. (2016b). The mesocosms were supplemented with
0.8 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">KH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (hereafter referred to as DIP
fertilization) between day 4 and day 5 of the experiment to promote
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation. Samples were collected during the early morning of each
day for 23 days with a clean Teflon pumping system from three selected depths
(1, 6, 12 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>) in each mesocosm (M1, M2, and M3) and outside (hereafter
called “lagoon waters” – O). Based on the results of different
biogeochemical and biological parameters during VAHINE (Berthelot et
al., 2015; Bonnet et al., 2016a; Turk-Kubo et al., 2015), three specific
periods were discerned (see detailed description in Sect. 3.1) within which
we have also investigated TEP dynamics: days 2–4 (P0) are the
pre-fertilization days when the DIP concentrations were
0.02–0.05 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> and combined dissolved
inorganic nitrogen concentrations were extremely low; days
5–14 (P1); after fertilization on day 5, the <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations
were <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and diazotrophic populations were
dominated by diatom–diazotroph associations. The second stage of the
experiment (P2) from days 15 to 23 was characterized by simultaneous increase
in primary and bacterial production as well as in <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates,
which averaged 27.7 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">N</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Berthelot et al., 2015)
and diazotrophic populations comprised primarily of the unicellular UCYN-C
(Turk-Kubo et al., 2015).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>TEP quantification</title>
      <p>Water samples (100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">mL</mml:mi></mml:math></inline-formula>) were gently (<inline-formula><mml:math display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 150 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">mbar</mml:mi></mml:math></inline-formula>) filtered
through 0.45 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> polycarbonate filters (GE Water &amp; Process
Technologies). Filters were then stained with a solution of 0.02 % Alcian
Blue (AB) and 0.06 % acetic acid (pH of 2.5). The excess dye was removed
by a quick deionized water rinse. Filters were then immersed in sulfuric acid
(80 %) for 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>, and the absorbance at 787 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> was measured
spectrophotometrically (CARY 100, equipped with an integrated sphere,
Varian). AB was calibrated using different volumes of purified polysaccharide
GX (Passow and Alldredge, 1995). TEP concentrations (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi></mml:mrow></mml:math></inline-formula> xanthan
gum [GX] equivalents <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.)
were measured according to Passow and Alldredge (1995). Total TEP content in the mesocosms was calculated by
integrating the weighted average of the TEP concentrations per depth and
multiplying it by the specific volume of each mesocosm. To estimate the role
of TEP in C cycling, the total amount of TEP-C was calculated for each
mesocosm, using the volumetric TEP concentrations at each depth, the specific
volume per mesocosm, and the conversion of GX equivalents to carbon, applying
the revised factor of 0.63 based on empirical experiments from both natural
samples from different oceanic areas and phytoplankton cultures (Engel,
2004).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Total organic carbon (TOC), particulate organic carbon (POC), dissolved
organic carbon (DOC)</title>
      <p>Samples for TOC concentrations were collected in duplicate from 6 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>
in each mesocosm and in lagoon waters in precombusted sealed glassware
flasks, acidified with <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and stored in the dark at 4 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C
until analysis. Samples were analyzed on a Shimadzu TOC-V analyzer with a
typical precision of 2 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Samples for POC
concentrations were collected by filtering 2.3 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">L</mml:mi></mml:math></inline-formula> of seawater through
a precombusted GF/F filter (450 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 4 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>), combusted and
analyzed on an EA 2400 CHN analyzer. DOC concentrations were calculated as
the difference between TOC and POC concentrations. Fully detailed
methodologies and data are available in Berthelot et al. (2015).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Dissolved inorganic phosphorus (DIP) and alkaline phosphatase activity
(APA)</title>
      <p>The determination of DIP concentrations is detailed in Berthelot et
al. (2015). Samples for DIP were collected from each of the three depths in
M1, M2, and M3 and lagoon waters (O) in 40 mL glass bottles, and stored in
<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analysis. DIP concentration was determined using a
segmented flow analyzer according to Aminot and Kérouel (2007). The
alkaline phosphatase activity (APA) was measured from the same depths and
sites using the analog substrate methylumbelliferone phosphate (MUF-P,
1 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:mrow></mml:math></inline-formula> final concentration; SIGMA) (Hoppe, 1983). Full details of
the measurements and analyses are described in Van Wambeke et al. (2016).</p>
</sec>
<sec id="Ch1.S2.SS5">
  <?xmltex \opttitle{Chlorophyll $a$ (Chl~$a$), primary production (PP), and DIP turnover
time}?><title>Chlorophyll <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>), primary production (PP), and DIP turnover
time</title>
      <p>Chlorophyll <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>) concentrations were determined by the
non-acidification method as described in Berthelot et al. (2015). Primary
production (PP) rates and DIP turnover time (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, i.e., the ratio
of <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentration and uptake) were measured using the
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>33</mml:mn></mml:msup></mml:math></inline-formula>P dual labeling method (Duhamel et al., 2006). 60 mL
bottles were amended with <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C and <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>33</mml:mn></mml:msup></mml:math></inline-formula>P and incubated for
3–4 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula> under ambient light and temperature. This was followed by the
addition of 50 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">KH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> solution
(10 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">mmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) to stop <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>33</mml:mn></mml:msup></mml:math></inline-formula>P assimilation. Samples were then
kept in the dark to stop <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C uptake. Samples were filtered on
0.2 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> polycarbonate membrane filters, and counts were done using
a Packard Tri-Carb<sup>®</sup> 2100TR scintillation
counter. PP and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> were calculated according to Moutin et
al. (2002).</p>
</sec>
<sec id="Ch1.S2.SS6">
  <title>Bacterial production (BP)</title>
      <p>Heterotrophic bacterial production (BP) was estimated using the
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H-leucine incorporation technique (Kirchman, 1993), adapted to the
centrifuge method (Smith and Azam, 1992). The complete methodology including
enumeration of heterotrophic bacterial abundances (BA) by flow cytometry is
detailed in Van Wambeke et al. (2016).</p>
</sec>
<sec id="Ch1.S2.SS7">
  <?xmltex \opttitle{{$\chem{N_{2}}$} fixation, diazotrophic abundance, and growth rates}?><title><inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation, diazotrophic abundance, and growth rates</title>
      <p><inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates were determined daily on ambient waters from
mesocosms and the lagoon. Samples were spiked with 99 %
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>15</mml:mn></mml:msup></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-enriched seawater (Mohr et al., 2010), incubated in situ
under ambient light and seawater temperatures as detailed in Berthelot et
al. (2015) and Bonnet et al. (2016a).</p>
      <p>Data and protocols of sampling for diazotrophic abundance and calculation of
their respective growth rates are detailed fully in Turk-Kubo et al. (2015).
Briefly, samples (from 6 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> only) were collected every other day from
the mesocosms, and from the lagoon waters. DNA was extracted and nine
diazotrophic phylotypes were identified using quantitative polymerase
chain reactions (qPCRs). The targeted diazotrophs were two unicellular
diazotrophic symbionts of different <italic>Braarudosphaera bigelowii</italic>
strains, UCYN-A1, UCYN-A2; free-living unicellular diazotroph cyanobacterial
phylotypes UCYN-B (<italic>Crocosphaera</italic> sp.), and UCYN-C
(<italic>Cyanothece</italic> sp. and relatives); <italic>Trichodesmium</italic> spp.; and
three diatom–diazotroph associations (DDAs), <italic>Richelia</italic> associated
with <italic>Rhizosolenia</italic> (Het-1), <italic>Richelia</italic> associated with
<italic>Hemiaulus</italic> (Het-2), <italic>Calothrix</italic> associated with
<italic>Chaetoceros</italic> (Het-3), and a widespread gamma-proteobacterial
phylotype <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-24774A11. Abundances are reported as <italic>nifH</italic> copies
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> as the number of <italic>nifH</italic> copies per genome in these
diazotrophs is uncertain. Growth and mortality rates were calculated for
individual diazotrophs inside the mesocosms when abundances were higher than
the limit of quantification for two consecutive sampling days as detailed in
Turk-Kubo et al. (2015).</p>
</sec>
<sec id="Ch1.S2.SS8">
  <title>Microscopic analyses</title>
      <p>The detailed method for sampling for microscopic analyses is described in
Bonnet et al. (2016a). Phytoplankton were visualized using a Zeiss Axioplan
(Zeiss, Jena, 6 Germany) epifluorescence microscope fitted with a green
(510–560 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>) excitation filter, which targeted the <italic>Richelia</italic>
and the UCYN phycoerythrin-rich cells. The diatom-diazotroph association
<italic>Rhizosolenia–Richelia</italic> were imaged in bright-field
microscopy.</p>
</sec>
<sec id="Ch1.S2.SS9">
  <title>Statistical analyses</title>
      <p>Statistical analyses were carried out with XLSTAT, a Microsoft Office Excel
based software. A Pearson correlation coefficient test was applied to examine
the association between two variables (TEP vs. physical, chemical, or
physiological variable) after linear regressions or log transformation of the
data. The nonparametric Kruskal–Wallis one-way analysis of variance was
applied to compare between TEP dynamics from each of the different phases. A
confidence level of 95 % (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>-</mml:mo><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>) was used. More details can be
found in the supporting information.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>General context and spatial and temporal dynamics of TEP</title>
      <p>The VAHINE experiment was designed to induce and follow diazotrophic blooms
and their fate within an oligotrophic environment (Bonnet et al., 2016b). Our
specific objectives of investigating TEP dynamics were thus examined within
the general context and aims of the large experiment. The first stage of the
experiment involved the enclosure of the lagoon waters and 3 days of
equilibration of the system (P0 – pre-fertilization days 2–4). At this
initial stage the total Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentrations averaged around
0.2 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in the lagoon water and in the mesocosms and the
phytoplankton consisted of diverse representatives from the cyanobacteria
(<italic>Prochlorococcus</italic>, <italic>Synechococcus</italic>), and diatoms such as
<italic>Pseudosolenia calcar-avis</italic> (Leblanc et al., 2016). During P0, the
most abundant members of the diazotrophic community in the lagoon waters were
<italic>Richelia–Rhizosolenia</italic> (Het-1), the unicellular UCYN-A1, UCYN-A2,
UCYN-C, and the filamentous <italic>Trichodesmium</italic> (Turk-Kubo et al., 2015).</p>
      <p>Fertilization of the mesocosms with DIP on day 4 stimulated a two-stage
response by the diazotrophic community that was further reflected by many of
the measured chemical and biological parameters (Berthelot et al., 2015;
Bonnet et al., 2016a, b; Turk-Kubo et al., 2015). After fertilization, from
day 5 through day 14 (P1), excluding a significant increase in <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
fixation rates, the functional community-wide biological responses (Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>,
PP, BP, BA) remained relatively low and similar to the values for P0 and for
P1 in the outside lagoon waters (Berthelot et al., 2015; Leblanc et
al., 2016; Van Wambeke et al., 2016). The autotrophic community during P1 was
comprised of picophytoplankton such as <italic>Prochlorococcus Synechococcus</italic>, micro- and nanophytoplankton including dinoflagellates, and a
diverse diatom community (<italic>Chaetoceros</italic>, <italic>Leptocylindrus</italic>,
<italic>Cerataulina</italic>, <italic>Guinardia</italic>, and <italic>Hemiaulus</italic>) (Leblanc et
al., 2016). Diatom-diazotroph associations (DDAs), predominantly
<italic>Richelia–Rhizosolenia</italic> (Het-1), dominated the diazotroph community
in the mesocosms (Turk-Kubo et al., 2015), although it still only contributed
from 2 to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 8 % of the total diatom biomass in P0 and P1
respectively (Leblanc et al., 2016). These DDAs were succeeded during the
last 9 days (day 15 to 23 termed P2) by a large bloom of unicellular
diazotrophs characterized predominantly as UCYN-C (Turk-Kubo et al., 2015).</p>
      <p>The final stage of the experiment (P2, days 15–23) was characterized by
significantly enhanced values for many biological parameters including
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates, Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, PP, BA, BP, and particulate organic
carbon and nitrogen compared to their respective average values in P1 (Bonnet
et al., 2016a; Leblanc et al., 2016; Van Wambeke et al., 2016). In all three
mesocosms, a significant bloom of UCYN-C developed (day 11 – M1, day 13 –
M2, day 15 – M3) and remained dominant representatives of the diazotroph
community until day 23 (Turk-Kubo et al., 2015). The ambient autotrophic
community responded to the input of new N, and the transfer of
diazotroph-derived N was demonstrated and seen in increasing abundance of
<italic>Synechococcus</italic>, picoeukaryotes, and the non-diazotrophic diatoms
<italic>Navicula</italic> and <italic>Chaetoceros</italic> spp. (Bonnet et al., 2016a;
Leblanc et al., 2016; Van Wambeke et al., 2016). Thus the extremely high
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates during this experiment provided sufficient new N to
yield high Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentrations (<inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1.4 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and rates
of PP (<inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) (Berthelot et al., 2015).</p>
</sec>
<sec id="Ch1.S3.SSx1" specific-use="unnumbered">
  <title>Dynamics of TEP</title>
      <p>TEP concentrations for the entire experimental period ranged from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 22
to 1200 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. In each mesocosm and in the lagoon waters
(O), the TEP concentrations were similar for the three sampled depths within
the 15 m water column, with an overall average of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>350</mml:mn><mml:mo>±</mml:mo><mml:mn>180</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. S1 in the Supplement). Temporally, TEP
concentrations generally followed the three distinct periods (P0, P1, P2)
that coincided with the described experimental phases characterized from the
diazotrophic populations and the biogeochemical and biological (production)
parameters (Berthelot et al., 2015; Bonnet et al., 2016a; Leblanc et
al., 2016; Turk-Kubo et al., 2015; Van Wambeke et al., 2016) (Figs. 1, S1).
Following the enclosure of the lagoon water in the mesocosms (day 2), TEP
concentrations increased from the lowest volumetric concentrations (averaging
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) measured on day 2 to reach maximum
concentrations in each of the mesocosms (average of
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 800 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) on day 5, <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 15 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula> after
the mesocosms were fertilized with DIP (Figs. S1, 1a). From day 5 to day 14
(P1) average TEP content in M2 and M3 decreased slightly yet significantly
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05) with the major decline in all mesocosms measured from day 5 to
day 6 (Figs. 1, S1, Table S1 in the Supplement). From day 15 to 23 (P2) TEP
concentrations in all mesocosms increased gradually (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05) over the
subsequent 9 days to reach <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>381</mml:mn><mml:mo>±</mml:mo><mml:mn>39</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> on day 23
(Fig. 1, Table S1).</p>
      <p>TEP concentrations in the lagoon waters were compared with those in the
mesocosms. These showed a similar pattern of increase in TEP during P0 and
P2, while the gradual decline in TEP concentrations during P1 was not
statistically significant as observed in the mesocosms (Figs. 1, S1). In the
lagoon waters, average TEP concentrations over the whole experimental period,
day 2 to day 23, were <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>335</mml:mn><mml:mo>±</mml:mo><mml:mn>56</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. While temporal
variations in the three mesocosms were generally statistically significant
(Fig. 1, Table S1), the total TEP content calculated for each mesocosm and
for an equivalent volume of lagoon water based on average mesocosm volume did
not differ significantly when we assessed all data obtained during P1 and P2
(Fig. 2, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&gt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05, Kruskal–Wallis analyses of variance). The lack of
significant differences in total TEP content in the mesocosms throughout the
experiment could reflect the contrasting processes of formation and breakdown
that together maintain a relatively stable pool of available TEP.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F1"><caption><p>Temporal changes in transparent exopolymeric particle (TEP)
concentrations (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) during the VAHINE mesocosm
experiment. Data shown are from daily sampling of three depths (1, 6,
12 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>) in each mesocosm. Data were analyzed according to the
characterized phases of the experiment based on the diazotrophic communities
that developed in the mesocosms (Turk-Kubo et al., 2015) and biogeochemical
characteristics (Bonnet et al., 2016a). <bold>(a)</bold> Mesocosm 1 (M1),
<bold>(b)</bold> Mesocosm 2 (M2), <bold>(c)</bold> Mesocosm 3 (M3),
<bold>(d)</bold> samples from the lagoon waters outside of the mesocosms (O).
Phases: P0 denotes days 2–4, P1 denotes days 5–14, P2 denotes days 15–23.
Linear regressions (Pearson) of TEP for each of the phases are designated by
a solid line, only when significant. Pearson correlation coefficients and
significant values (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05) are represented in bold in Table S1.</p></caption>
          <?xmltex \igopts{width=193.47874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3793/2016/bg-13-3793-2016-f01.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Total content of transparent exopolymeric particles (TEP) per
mesocosm and in the lagoon waters surrounding the mesocosms. The average
amount in <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">mesocosm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the two periods of the experiment
after DIP fertilization was calculated from the total daily amount based on
concentrations measured at three depths and integrated for the specific
volume per mesocosm or for an equivalent volume of lagoon water. Averages are
represented in box plots as a function of two different phases: P1 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> days
5–14 and P2 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> days 15–23. Red, blue, green, and black denote Mesocosm 1
– M1, Mesocosm 2 – M2, Mesocosm 3 – M3, and outside lagoon – O,
respectively. Straight lines within the boxes mark the median. No significant
differences were observed between the phases or between the three mesocosms
and the outside lagoon (Kruskal–Wallis nonparametric analysis of variance;
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&gt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3793/2016/bg-13-3793-2016-f02.png"/>

        </fig>

      <p>Mechanical processes such as wave turbulence and tidal effects can influence
TEP formation and breakdown (and resulting content) (Passow, 2002;
Stoderegger and Herndl, 1999). Our results indicate no obvious effects of
these parameters on TEP content as these were similar in the enclosed
mesocosms and the outside lagoon (Figs. 1, 2). The difference between the
TEP in the mesocosms and the lagoon water is significantly different
immediately after P addition and only during P1 after P addition and
subsequent utilization when declining P availability was correlated with
increased TEP concentrations in the mesocosms. TEP concentrations from the
lagoon water during P1 did not show any significant trend (Figs. 1, S1). In
the mesocosms, the significant decline in TEP in the first days after P
addition is probably due to two factors: (a) phytoplankton relieved of P
stress will produce fewer TEP and increase growth rates; (b) bacteria will
utilize the added P as well as TEP and other organic C sources to grow, so a
higher TEP consumption and therefore a more significant decline in the
mesocosms compared to the outside lagoon (see below Sect. 3.2).</p>
      <p>The relative uniformity and stability of TEP within the 15 m water column of
both the mesocosms and the lagoon waters reflects the homogeneity of the
shallow lagoon system. The variability between the three depths was
statistically insignificant in many of the other physical, chemical, and
biological features of the mesocosms and the lagoon waters for temperature,
salinity, inorganic nutrients (N, P, Si), POC, PON, POP, DOC, Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, and
primary production and heterotrophic bacterial production (Berthelot et
al., 2015; Bonnet et al., 2016a, b; Van Wambeke et al., 2016). In contrast to
some marine systems where TEP concentrations were correlated with the
vertical distribution of Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> or POC (Bar-Zeev et al., 2009, 2011; Engel,
2004; Ortega-Retuerta et al., 2009; Passow, 2002), the results we obtained
here showed no correlation to the vertical (i.e. depth-related) autotrophic
signatures. Moreover, the similar TEP concentrations at 1, 6, and
15 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> do not support a subsurface maxima in TEP concentrations,
stimulated by abiotic aggregation, at the sea-surface top layer as has been
reported at 1 m depth in different oceanic areas (Wurl et al., 2011).
Abiotic processes of formation and breakdown can be influential; yet here we
do not see a depth-correlated specific abiotic driver and TEP were evenly
distributed within the 15 m water column for all mesocosms (Fig. S1).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>DIP availability, APA, and TEP content</title>
      <p>The average TEP concentrations we measured in the New Caledonian waters are
comparable to TEP concentrations reported from other marine environments such
as the eastern temperate–subarctic North Atlantic (Engel, 2004), the Ross
Sea (Hong et al., 1997), western Mediterranean – Gulf of Cadiz and the
Straits of Gibraltar (García et al., 2002; Prieto et al., 2006), the
Gulf of Aqaba (northern Red Sea) (Bar-Zeev et al., 2009), in the northern
Adriatic Sea (Radić et al., 2005), and in the New Caledonian lagoon (Mari
et al., 2007; Rochelle-Newall et al., 2008).</p>
      <p>While prediction as to the expected TEP concentrations with trophic or
productive status is difficult (Beauvais et al., 2003), decreasing
availability of dissolved nutrients such as nitrate and phosphate has been
correlated with enriched TEP concentrations in both cultured phytoplankton
and natural marine systems (Bar-Zeev et al., 2011; Brussaard et al., 2005;
Engel et al., 2002; Urbani et al., 2005). In P-limited systems, low Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
concentrations often reflect the nutrient-stressed phytoplankton. As long as
light and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are available, limitation of essential nutrients
results in an uncoupling between carbon fixation and growth during which the
excess photosynthate can be used to produce carbon-rich compounds including
TEP (Berman-Frank and Dubinsky, 1999; Mari et al., 2001; Rochelle-Newall et
al., 2008). Moreover, as DIP availability declines, cells activate
P-acquisition pathways and enzymes such as APA to access P from other
sources. Thus, and based on previous data (Bar-Zeev et al., 2011), we
hypothesized that TEP content would be negatively correlated with autotrophic
biomass (Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>) and PP and positively correlated with APA.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Relationships between the concentration of transparent exopolymeric
particles (TEP), (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and <bold>(a)</bold> dissolved
inorganic phosphorus DIP (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), <bold>(b)</bold> turnover
time of DIP – <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (days), and <bold>(c)</bold> alkaline phosphatase
activity (APA) (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) in the three mesocosms (M1–
red; M2– blue; M3– green) during phase 2 (days 15–23). For
<bold>(a)</bold> and <bold>(b)</bold> Pearson linear regressions yielded an <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of
0.54, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>23</mml:mn></mml:mrow></mml:math></inline-formula> (TEP <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> DIP), and an <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of 0.52, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>26</mml:mn></mml:mrow></mml:math></inline-formula>
(TEP <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>), and for <bold>(c)</bold> log-transformed
(log(TEP) <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> log(APA)) with an <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of 0.68, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>25</mml:mn></mml:mrow></mml:math></inline-formula>. All correlations
were significant (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05). Error bars represent <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 standard
deviation.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3793/2016/bg-13-3793-2016-f03.png"/>

        </fig>

      <p>Mesocosm fertilization on the evening of day 4 enriched the system with
tenfold higher DIP concentrations that were available for microbial
utilization throughout the following 8–10 days (Berthelot et al., 2015;
Bonnet et al., 2016b; Leblanc et al., 2016; Van Wambeke et al., 2016). Thus,
when DIP concentrations were relatively sufficient during P1, no
statistically significant relationship was observed between TEP and POP,
DIP, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, or PP (Table S2). This situation changed with
the declining availability of DIP and the shift in the response of the system
during P2 from day 15 to 23. During P2, high TEP concentrations were
associated with decreasing DIP for each of the mesocosms, with an overall
negative correlation (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.23</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>23</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>0.02</mml:mn></mml:mrow></mml:math></inline-formula>) (Fig. 3a). A
similar negative trend was obtained between TEP and the turnover time of DIP
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.28</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>26</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>0.006</mml:mn></mml:mrow></mml:math></inline-formula>) (Fig. 3b).</p>
      <p>In the Southwest Pacific Ocean, the critical DIP turnover time
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) required for single filaments of <italic>Trichodesmium</italic> to
grow is 2 days (Moutin et al., 2005). Here <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values lower than
1 day, indicative of a strong DIP deficiency, were reached on day 14 in M1,
day 19 for M2, and on day 21 for M3. The average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values during
P2 were significantly different in each mesocosm, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> of 0.5, 1.8,
3.9 days for M1, M2, M3, respectively (Berthelot et al., 2015). Although
turnover rates alone do not indicate P deficiency, increasing APA suggests
that the cells were responding to P stress. APA increased rapidly in both M1
and M2 from day 18 (average for M1 and M2 during P2
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 8 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">MUF</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">P</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">hyd</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and after
day 21 in M3, illustrating a biological response of the microbial community
to P stress (Van Wambeke et al., 2016). We did not specifically measure TEP
production by autotrophic or heterotrophic plankton; yet, the significant
(although indirect relationship) negative correlation of TEP with DIP
concentrations and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. 3a, b) suggests that microbial
responses to decreased DIP availability resulted from either (1) an increase
in TEP synthesis through higher polysaccharide production rather than biomass
which requires higher nutrients (Berman-Frank and Dubinsky, 1999; Wood and
Van Valen, 1990) or (2) nutrient limitation, inducing greater breakdown of
biomass and particulate organic matter (POM) (maybe via programmed cell
death) and subsequent abiotic formation of TEP. We obtained a significant
semi-logarithmic relationship between TEP and APA (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.33</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>25</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>0.002</mml:mn></mml:mrow></mml:math></inline-formula>) (Fig. 3c), which implies active TEP formation when DIP
concentrations are reduced and APA increases until a saturating point,
whereby any further increases in APA do not appear to impact TEP
concentrations (Fig. 3c). This relationship may not always be valid, as APA
in the lagoon waters was consistently higher at 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> than APA measured
at 6 and 12 m depths (Van Wambeke et al., 2016); yet TEP concentrations were
uniform at all depths (Fig. S1).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F4"><caption><p><bold>(a)</bold> Temporal dynamics of TEP carbon concentrations (TEP-C,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:mrow></mml:math></inline-formula>) in relationship to the average total organic carbon (TOC)
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) (thin black line) in the mesocosms (M1 – red dots,
M2 – blue dots, M3 – green dots, and black dots – outside waters (O).
The black solid line designates TEP-C averaged for the three mesocosms (thick
black line). TEP-C was measured from 6 m depths and calculated according to
Engel (2000). <bold>(b)</bold> Temporal changes in the percentage of TEP-C in TOC
(%) in mesocosms (green dots), and the percentage of TEP-C in the lagoon waters (Out),
(black dots). <bold>(c)</bold> Relationship between TEP concentrations
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and TOC (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mole</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), during
phase 2 (days 15–23) for Mesocosm 1 (M1, red dots), Mesocosm 2 (M2, blue
dots), Mesocosm 3 (M3, green dots). Significant correlations were observed
(Pearson) for all mesocosms. <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.75</mml:mn></mml:mrow></mml:math></inline-formula> – M1, 0.73 – M2, and 0.58 – M3
respectively, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 7–8, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05. All statistics are detailed in
Table S2, (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 7–8). Error bars represent <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 standard
deviation.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3793/2016/bg-13-3793-2016-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>TEP and carbon pools</title>
      <p>The size range of TEP spans particles from 0.45 to 300 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
(Alldredge et al., 1993; Bar-Zeev et al., 2015). TEP precursors
(0.05–0.45 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> size) are formed and broken down in the DOC pool
and thus essentially “TEP establish a bridge between the dissolved organic
matter and the POM pool” (Engel, 2004). Our data show a generally stable
contribution of TEP to the TOC pool. Excluding day 5, where TEP-C comprised
<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>56.5</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> % of TOC, the percentage of TEP-C was <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>28.9</mml:mn><mml:mo>±</mml:mo><mml:mn>9.3</mml:mn></mml:mrow></mml:math></inline-formula> % and
<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>27.0</mml:mn><mml:mo>±</mml:mo><mml:mn>7.2</mml:mn></mml:mrow></mml:math></inline-formula> % of the TOC in all mesocosms and in the lagoon waters,
respectively (Fig. 4a, b).</p>
      <p>TEP concentrations can be directly and positively correlated with POC (Engel,
2004) and with DOC (Ortega-Retuerta et al., 2009); yet, TEP concentrations
can also be negatively related to POC, indicative of low TEP production when
POC concentrations are high (Bar-Zeev et al., 2011). In the mesocosms, a
significant positive correlation between TEP concentrations and TOC was
obtained for all three mesocosms only during P2 (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.75</mml:mn></mml:mrow></mml:math></inline-formula>, 0.73, 0.58 and
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05 for M1, M2, M3 respectively) (Fig. 4c, Table S2). This period
coincided with the largest gain in total autotrophic and heterotrophic
biomass and elevated <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation, PP, and BP rates (Berthelot et
al., 2015; Bonnet et al., 2016a; Van Wambeke et al., 2016).</p>
      <p>Although TEP were significantly and positively correlated with TOC in the
mesocosms during P2, this was not the case in the lagoon water (outside the
mesocosms) (Table S2) or with either POC or DOC in any mesocosm for either P1
or P2 (Table S2). The absence of any significant correlation between TEP and
POC was surprising as TEP are part of the POC pool comprising 40–60 %
of the particulate combined carbohydrates in POC (Engel, 2004; Engel et
al., 2012). Furthermore, we did not obtain any significant correlations of
TEP and specific components of the dissolved organic matter such as
fluorescent dissolved organic matter (FDOM) or chromophoric dissolved organic
matter (CDOM) that was coupled to the dynamics of <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation in the
mesocosms (Tedetti et al., 2016). The lack of significant correlation could
partially reflect methodological issues. In this experiment (and
operationally according to published protocol; Passow and Alldredge, 1995),
TEP were measured on 0.45 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> filters; therefore Alcian Blue
stained particles included particles <inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.45 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, while POC was
measured on GF/F (nominal pore size 0.7 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>). DOC is typically
considered for the <inline-formula><mml:math display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.45 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> fraction (Thurman, 1985),
although here no direct measurements of DOC were made and DOC was obtained by
subtracting POC from TOC. Thus, DOC actually covered the
<inline-formula><mml:math display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.7 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> fraction. Our methodology therefore precluded
determination of the smaller TEP precursors that would contribute to the DOC
and colloidal pools (Villacorte et al., 2015). As such we probably
overestimated TEP relative to POC and at the same time underestimated TEP
contribution to the DOC pool (Bar-Zeev et al., 2009). The lacking
correspondence between TEP concentrations and the pools of POC and DOC may
also result from the uncoupling between formation and breakdown processes.
Abiotic processes will modify relationships obtained between biotic TEP
production and recycling (Wurl et al., 2011). Thus, it is feasible that
especially during P1, abiotic factors predominated breaking down larger TEP
particles into smaller TEP precursors that would be mobilized to the DOC
pool, and would thus maintain a relatively stable TEP pool although we
observed a positive increase in TEP with increased blooms of DDAs (see below
Sect. 3.4.1).</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Production and utilization of TEP by primary and bacterial populations</title>
      <p>Typically, TEP are formed by diverse algal and bacterial species (Mari and
Burd, 1998), yet are utilized mostly by bacteria and grazers as a rich C
source (Azam and Malfatti, 2007; Bar-Zeev et al., 2015; Engel and Passow,
2001). Throughout this experiment (P1 and P2 stages) TEP were not
significantly correlated to parameters related to autotrophic production such
as total Chl <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, PP, non-diazotrophic diatom, or cyanobacterial abundance, or
the growth and mortality rates of these populations (Table S2). Furthermore,
during P1, no significant relationship between TEP and BA (total or specific
for high and low nucleic acid bacteria – HNA or LNA respectively), BP, or
division rates was noted in any of the mesocosms (Table S2).</p>
      <p>This changed during P2 when TEP were positively correlated to the increasing
BP for all three mesocosms (Pearson's correlation coefficient <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.63</mml:mn></mml:mrow></mml:math></inline-formula>,
0.66, 0.69 for M1, M2, and M3 respectively, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05) (Fig. 5). This
contrasted with the relationship in the lagoon water outside the mesocosms
where no significant correlation between TEP and BP was noted (Table S2).
During P2, TEP were also strongly and positively correlated to TOC, which
significantly increased over this time period (Fig. 4c) due to the high
production rates of both photosynthetic and heterotrophic bacterial
populations. However, although BP and PP were positively associated during P2
(log–log transformation, Fig. 5 and in Van Wambeke et al., 2016), we found
no direct correlation between TEP and PP for either linear (Table S2) or
log-transformed regression (not shown). This coupling between PP and BP,
while a concurrent association between TEP and BP occurred during P2,
indicates TEP may have been utilized by bacteria as a carbon source (Azam,
1998; Ziervogel et al., 2014) or provided a suitable niche for aggregation
and proliferation of heterotrophic bacteria.</p>
</sec>
<sec id="Ch1.S3.SSx2" specific-use="unnumbered">
  <title>TEP and diazotrophic populations</title>
      <p>Overall <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates were not significantly correlated with TEP
concentrations at any time throughout the experiment (Table S2); neither
could we discern any direct evidence of TEP providing a carbon source for
heterotrophic diazotrophs as was found previously in the Gulf of Aqaba where
these organisms contributed greatly to the <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates (Rahav
et al., 2015). Indeed, no relationship was found between TEP concentrations
and the abundance or growth rates of the heterotrophic diazotrophs
<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-24774A11 (Moisander et al., 2014). Although these organisms were
present throughout the experiment, and increased <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> fourfold from day 9
to 15 especially in M3, they contributed only a small fraction to the total
diazotrophic biomass and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation rates (Turk-Kubo et al., 2015).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Relationship between heterotrophic bacterial production (BP)
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">ng</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and TEP concentrations
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) during phase 2 (days 15–23) when BP increased
following the enhanced PP (Van Wambeke et al., 2016), for Mesocosm 1 (M1, red
dots), Mesocosm 2 (M2, blue dots), Mesocosm 3 (M3, green dots). Pearson's
linear regressions yielded <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.57</mml:mn></mml:mrow></mml:math></inline-formula> for M1, 0.42 for M2, and 0.56 for M3
respectively. Significant correlations were observed for all mesocosms and
are detailed in Table S2. Error bars represent <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 standard deviation.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3793/2016/bg-13-3793-2016-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Temporal changes in TEP concentrations and Het-1 net growth rates
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), (gray triangles) for <bold>(a)</bold> Mesocosm 1 (M1),
<bold>(b)</bold> Mesocosm 2 (M2), and <bold>(c)</bold> Mesocosm 3 (M3). TEP
concentrations were averaged from the three depths sampled per mesocosm
(green circles). Het-1 net growth rates were calculated based on changes of
<italic>nifH</italic> copies <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Turk-Kubo et al., 2015) measured every
other day. <bold>(d)</bold> Relationship between TEP concentrations
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">GX</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and Het-1 growth rate (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) for all
three mesocosms. Significant correlations were observed (Pearson) from all
mesocosms together. <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.60</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn>0.0001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula>. Error bars
represent <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 standard deviation. <bold>(e, f)</bold> Epifluorescent
microscopical images of the diatom–diazotroph association
<italic>Richelia–Rhizosolenia</italic> identified by Het-1 abundance. Images by
V. Cornet-Barthaux. <bold>(g, h)</bold> The diazotroph UCYN-C which bloomed and
formed large aggregates (comprised also of TEP) that enhanced vertical flux
and export production during P2. Images by S. Bonnet.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/3793/2016/bg-13-3793-2016-f06.png"/>

        </fig>

      <p>However, discerning individual diazotroph populations revealed some
species-specific correspondence to TEP at certain periods during the
experiment. For example, throughout the experiment, net growth rates (i.e.,
based on differences of nifH copies <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> from day to day) of the
DDA <italic>Richelia</italic> (Het-1) associated with <italic>Rhizosolenia</italic>
(Turk-Kubo et al., 2015) temporally paralleled TEP concentrations in all
mesocosms (Fig. 6a, b, c, e, f). During both P1 and P2, TEP concentrations
were positively correlated with the net growth rates of Het-1 (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.6</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>=</mml:mo><mml:mn>0.0001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> for all mesocosms) (Fig. 6d). Although the DDAs
dominated the diazotroph community during P1 (primarily Het-1), their overall
contribution to diatom biomass in the mesocosm was low, with only 2–8 %
of all diatom biomass (Leblanc et al., 2016). We did not observe an overall
relationship between TEP and total diatom biomass throughout VAHINE although
diatoms are well known for their TEP production especially when nutrients are
limiting and growth rates decline (Fukao et al., 2010; Urbani et al., 2005).
Thus, the positive association between TEP and the growth rates of Het-1 and
not of the other DDAs Het-2 and Het-3 is intriguing.</p>
      <p>TEP were also associated with the growth rates of the unicellular UCYN-C
diazotrophs that bloomed during P2 and dominated the <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation
rates of this period (Berthelot et al., 2015; Turk-Kubo et al., 2015). During
P2, UCYN-C net growth rates were positively correlated with increasing TEP
concentrations (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.65</mml:mn></mml:mrow></mml:math></inline-formula>, 0.83, 0.88 for M1, M2, M3 respectively,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo></mml:mrow></mml:math></inline-formula> 0.05). Furthermore, UCYN-C probably produced an organic matrix possibly
also comprised of TEP that aided the formation of large aggregates
(100–500 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) (Fig. 6g, h). These aggregates were predominantly
responsible for the enhanced export production (<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>22.4</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> % of exported
POC) (Bonnet et al., 2016a; Knapp et al., 2015). High TEP content was
obtained from sediment traps on days 15 and 16 (Fig. S1), corresponding to
the height of the UCYN-C bloom in the mesocosms (Turk-Kubo et al., 2015) and
substantiating the role of TEP in facilitating export flux in the New
Caledonian lagoon (Mari et al., 2007).</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p>Although physically separated from the surrounding lagoon, TEP
formation and breakdown was difficult to tease out in the VAHINE mesocosms
where abiotic drivers (turbulence, shear forces, chemical coagulation) and
biotic processes (algal and bacterial production and utilization) maintained
an apparently constant pool of TEP within the TOC. Total TEP content was
generally stable throughout the experimental period of 23 days and comprised
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 28 % of the TOC in the mesocosms and lagoon, with uniform
distribution in the three sampled depths of the 15 m deep-water column.</p>
      <p>TEP concentrations appeared to be impacted indirectly via changes in DIP
availability as it was biologically consumed in the mesocosms after
fertilization. Thus, declining P availability (low DIP, rapid <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>DIP</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>,
and increased APA) was associated with higher TEP content in all mesocosms.
TEP concentrations were also positively associated with net growth rates of
two important diazotrophic groups: the DDA <italic>Richelia–Rhizosolenia</italic>
(Fig. 6e, f), during P1 and P2 (excluding days 21–23); and UCYN-C
diazotrophs which bloomed during P2. High TEP content in the sediment traps
during the UCYN-C bloom indicates that TEP may have been part of the organic
matrix associated with the large aggregates of UCYN-C that were exported to
the sediment traps (Fig. 6g, h).</p>
      <p>TEP may have also provided bacteria with a rich organic carbon source, especially during P2 when higher
BP (stimulated by the higher PP) was positively correlated with higher TEP
concentrations. High production of TEP also occurred in the lagoon water
outside the mesocosms on day 23 during the decline of a short-lived dense
surface bloom of the diazotrophic <italic>Trichodesmium</italic> (Spungin et
al., 2016). Our results emphasize the complexities of the natural system and
suggest that to understand the role of compounds such as TEP, and their
contribution to the DOC and POC pools, a wider perspective and range of
methodologies should be undertaken to examine and characterize the different
components of marine gels (not only carbohydrate-based) (Bar-Zeev et
al., 2015; Verdugo, 2012).</p>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-13-3793-2016-supplement" xlink:title="pdf">doi:10.5194/bg-13-3793-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p>Ilana Berman-Frank conceived and designed the investigation
of TEP dynamics within the VAHINE project. Thierry Moutin, France Van
Wambeke, Ilana Berman-Frank, Dina Spungin, and Eyal Rahav participated in the
experiment and performed analyses of samples and data; Kendra Turk-Kubo
analyzed diazotrophic populations. Ilana Berman-Frank and Dina Spungin wrote
the manuscript with contributions from all co-authors.</p>
  </notes><?xmltex \hack{\newpage}?><ack><title>Acknowledgements</title><p>Many thanks to Sophie Bonnet who created, designed, and successfully executed
the VAHINE project. The participation of Ilana Berman-Frank, Dina Spungin,
and Eyal Rahav in the VAHINE experiment was supported by the German-Israeli
Research Foundation (GIF), project number 1133-13.8/2011, through a
collaborative grant (no. 2012/3-9246) to Ilana Berman-Frank and Sophie Bonnet and
C. Dupouy from the Israel Ministry of Science and Technology (MOST) and the High
Council for Science and Technology (HCST) France, and a grant (no. 2008048)
from the United States-Israel Binational Science Foundation (BSF) to Ilana Berman-Frank.
Funding for this research was provided by the Agence Nationale de la Recherche (ANR starting
grant VAHINE ANR-13-JS06-0002), INSU-LEFE-CYBER program, GOPS, IRD, and
M.I.O. The authors thank the captain and crew of the R/V <italic>Alis</italic>, the
SEOH divers service from the IRD research center of Noumea (E. Folcher, B.
Bourgeois, and A. Renaud) and from the Observatoire Océanologique de
Villefranche-sur-mer (OOV, J. M. Grisoni), and the technical service and
support of the IRD research center of Noumea. Thanks are also expressed to C.
Guieu, F. Louis, and J. M. Grisoni from OOV for mesocosm design and
deployment advice. Special thanks to H. Berthelot and all other participants
and principal investigators of the project for the joint efforts and for
making their data available for further analyses and to the reviewers who
helped improve the manuscript. This work is in partial fulfillment of the
requirements for a PhD thesis for Dina Spungin at Bar Ilan University.
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: S. Bonnet <?xmltex \hack{\newline}?></p></ack><ref-list>
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    <!--<article-title-html>Dynamics of transparent exopolymer particles (TEP) during the VAHINE mesocosm
experiment in the New Caledonian lagoon</article-title-html>
<abstract-html><p class="p">In the marine environment, transparent exopolymeric particles (TEP) produced
from abiotic and biotic sources link the particulate and dissolved carbon
pools and are essential vectors enhancing vertical carbon flux. We
characterized spatial and temporal dynamics of TEP during the VAHINE
experiment that investigated the fate of diazotroph-derived nitrogen and
carbon in three replicate dissolved inorganic phosphorus (DIP)-fertilized
50 m<sup>3</sup> enclosures in the oligotrophic New Caledonian lagoon. During
the 23 days of the experiment, we did not observe any depth-dependent changes
in TEP concentrations in the three sampled depths (1, 6, 12 m).
TEP carbon (TEP-C) content averaged 28.9<mspace width="0.125em" linebreak="nobreak"/> ±  9.3 and
27.0<mspace width="0.125em" linebreak="nobreak"/> ±  7.2 % of total organic carbon (TOC) in the mesocosms and
surrounding lagoon respectively and was strongly and positively coupled with
TOC during P2 (i.e., days 15–23). TEP concentrations in the mesocosms
declined for the first 9 days after DIP fertilization (P1  =  days 5–14)
and then gradually increased during the second phase. Temporal changes in TEP
concentrations paralleled the growth and mortality rates of the
diatom–diazotroph association of <i>Rhizosolenia</i> and <i>Richelia</i>
that predominated the diazotroph community during P1. By P2, increasing total
primary and heterotrophic bacterial production consumed the supplemented P
and reduced availability of DIP. For this period, TEP concentrations were
negatively correlated with DIP availability and turnover time of DIP
(<i>T</i><sub>DIP</sub>), while positively associated with enhanced alkaline
phosphatase activity (APA) that occurs when the microbial populations are
P stressed. During P2, increasing bacterial production (BP) was positively
correlated with higher TEP concentrations, which were also coupled with the
increased growth rates and aggregation of the unicellular cyanobacterial
Group C (UCYN-C) diazotrophs that bloomed during this period. We conclude
that the composite processes responsible for the formation and breakdown of
TEP yielded a relatively stable TEP pool available as both a carbon source
and facilitating aggregation and flux throughout the experiment. TEP were
probably mostly influenced by abiotic physical processes during P1, while
biological activity (BP, diazotrophic growth and aggregation, export
production) mainly impacted TEP concentrations during P2 when DIP
availability was limited.</p></abstract-html>
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