<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0">
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-4219-2016</article-id><title-group><article-title>Long-term drainage reduces CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake and increases CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission
on a Siberian floodplain due to shifts in vegetation community and soil
thermal characteristics</article-title>
      </title-group><?xmltex \runningtitle{Long-term drainage reduces CO${}_{{2}}$ uptake and increases CO${}_{{2}}$ emission}?><?xmltex \runningauthor{M.~J.~Kwon et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Kwon</surname><given-names>Min Jung</given-names></name>
          <email>mkwon@bgc-jena.mpg.de</email>
        <ext-link>https://orcid.org/0000-0002-7330-2320</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Heimann</surname><given-names>Martin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6296-5113</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Kolle</surname><given-names>Olaf</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Luus</surname><given-names>Kristina A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Schuur</surname><given-names>Edward A. G.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Zimov</surname><given-names>Nikita</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Zimov</surname><given-names>Sergey A.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0053-6599</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Göckede</surname><given-names>Mathias</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2833-8401</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Biogeochemical Systems, Max Planck Institute for Biogeochemistry,
Jena, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Division of Atmospheric Sciences, Department of Physics, Helsinki
University, Helsinki, Finland</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Centre for Applied Data Analytics Research (CeADAR), Dublin Institute
of Technology, Dublin, Ireland</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Center for Ecosystem Science and Society, and Department of
Biological Sciences, Northern Arizona University,<?xmltex \hack{\newline}?> Flagstaff, AZ, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>North-East Science Station, Pacific Institute for Geography,
Far-Eastern Branch of Russian Academy of Science,<?xmltex \hack{\newline}?> Chersky, Republic of Sakha
(Yakutia), Russia</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Min Jung Kwon (mkwon@bgc-jena.mpg.de)</corresp></author-notes><pub-date><day>26</day><month>July</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>14</issue>
      <fpage>4219</fpage><lpage>4235</lpage>
      <history>
        <date date-type="received"><day>7</day><month>December</month><year>2015</year></date>
           <date date-type="rev-request"><day>18</day><month>January</month><year>2016</year></date>
           <date date-type="rev-recd"><day>17</day><month>June</month><year>2016</year></date>
           <date date-type="accepted"><day>30</day><month>June</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016.html">This article is available from https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016.pdf</self-uri>


      <abstract>
    <p>With increasing air temperatures and changing precipitation patterns forecast
for the Arctic over the coming decades, the thawing of ice-rich permafrost is
expected to increasingly alter hydrological conditions by creating mosaics of
wetter and drier areas. The objective of this study is to investigate how 10
years of lowered water table depths of wet floodplain ecosystems would affect
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes measured using a closed chamber system, focusing on the role
of long-term changes in soil thermal characteristics and vegetation community
structure. Drainage diminishes the heat capacity and thermal conductivity of
organic soil, leading to warmer soil temperatures in shallow layers during
the daytime and colder soil temperatures in deeper layers, resulting in a
reduction in thaw depths. These soil temperature changes can intensify
growing-season heterotrophic respiration by up to 95 %. With decreased
autotrophic respiration due to reduced gross primary production under these
dry conditions, the differences in ecosystem respiration rates in the present
study were 25 %. We also found that a decade-long drainage installation
significantly increased shrub abundance, while decreasing <italic>Eriophorum angustifolium </italic> abundance resulted in <italic>Carex </italic> sp. dominance. These
two changes had opposing influences on gross primary production during the
growing season: while the increased abundance of shrubs slightly increased
gross primary production, the replacement of <italic>E. angustifolium</italic> by
<italic>Carex </italic> sp.  significantly decreased it. With the effects of
ecosystem respiration and gross primary production combined, net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
uptake rates varied between the two years, which can be attributed to
<italic>Carex</italic>-dominated plots' sensitivity to climate. However, underlying
processes showed consistent patterns: 10 years of drainage increased soil
temperatures in shallow layers and replaced <italic>E. angustifolium</italic> by
<italic>Carex</italic> sp., which increased CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission and reduced CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
uptake rates. During the non-growing season, drainage resulted in 4 times
more CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emissions, with high sporadic fluxes; these fluxes were induced
by soil temperatures, <italic>E. angustifolium</italic> abundance, and air pressure.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Arctic ecosystems have long acted as carbon sinks due to their consistent low
air temperatures (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and the presence of permafrost that both
inhibit the mineralization of soil carbon. Although Arctic net primary production and
standing biomass are smaller than those of adjacent climate zones (Saugier et
al., 2001), the low decomposition rates of Arctic ecosystems have resulted in
an accumulation over 1000 Pg of belowground organic carbon in the upper 3 m
of the soil in permafrost regions (Hugelius et al., 2014; Schuur et al.,
2015). However, the tendency for Arctic ecosystems to take up more CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
on average than they release may be changing due to global climate change,
which has given rise to shifts in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and precipitation patterns.
While the photosynthetic rates and standing biomass in the Arctic have become
larger (Epstein et al., 2012; Jia, 2003; Myneni et al., 1997; Xu et al.,
2013), the rate of organic carbon decomposition has also increased
(Bond-Lamberty and Thomson, 2010), which could potentially accelerate
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cycle processes. Further, it is not only a matter of how fast
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> circulates between the atmosphere and the upper soil layers but
also what will happen to the massive amount of stored carbon (Schuur et al.,
2009). Thus, understanding how CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux patterns of Arctic ecosystems
change as a consequence of climate change, as well as how this affects the
fate of permafrost carbon, is of great importance (Abbott et al., 2016; Koven
et al., 2011; Schuur et al., 2008, 2015).</p>
      <p>Gross primary production (GPP) is chiefly determined by the length of the
growing season (Baptist and Choler, 2008; White et al., 1999; Xia et al.,
2015) and leaf area index (LAI; Barr et al., 2004); secondary influences are
water and nutrient availability, as well as local climate conditions such as
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and radiation (Chapin et al., 2012a). As each plant species
responds differently to changes in the aforementioned factors controlling
GPP, and as successional changes in vegetation species distribution may take
place under a changing climate, the total amount of carbon assimilated
(net primary production, NPP), and plant respiration
(autotrophic respiration, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> may undergo changes. The
rate of organic matter decomposition (heterotrophic respiration,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> increases under warmer and more aerobic conditions, and is
also influenced by the quality of available organic matter. If any of these
conditions are modified due to climate change, the rate of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> may
also change in response.</p>
      <p>Warming <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> have been observed in the Arctic (Serreze et al.,
2000), and disproportionately warmer conditions are forecast in response to
climate change (Collins et al., 2013; Kirtman et al., 2013; Overland et al.,
2014). As noted in the preceding paragraph, rates of both photosynthesis and
organic matter decomposition have increased with warmer <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(Belshe et al., 2013; Bond-Lamberty and Thomson, 2010; Epstein et al., 2012;
Jia, 2003; Myneni et al., 1997; Xu et al., 2013), and these trends are
predicted to continue. This has the potential to change Arctic terrestrial
ecosystems from a carbon sink to a source, with accelerated organic carbon
decomposition as a dominant process (Koven et al., 2011; Schaefer et al.,
2011). Schuur et al. (2015) predict that, under the current climate warming
trajectory, <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5–15 % of the permafrost carbon pool may be
released into the atmosphere by 2100.</p>
      <p>An increase in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can have an immediate impact on soil hydrology,
potentially adding complexity to the drivers of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes and the
permafrost carbon pool. In permafrost regions, land surface warming is
usually followed by topographical changes, and thus the formation of
small-scale local hydrological conditions; wetter microsites can form due to
subsiding ground following permafrost thaw (Jorgenson et al., 2006; O'Donnell
et al., 2011), while adjacent areas become drier as water drains laterally to
subsided areas. These phenomena are particularly pronounced when increased
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> thaws ice-rich permafrost, such as ice wedges and ice lenses
(Liljedahl et al., 2016). In some Arctic regions, changing precipitation
patterns can aggravate or offset this situation. Precipitation in the Arctic
has been generally increasing over the last 5 decades (Kattsov and Walsh,
2000), but patterns are fluctuating across both time and space (Curtis et
al., 1998; Stafford et al., 2000); at times, the surface water balance has
also been found to be decreasing (Oechel et al., 2000). Although, overall,
greater precipitation is expected in the Arctic as the result of intensified
hydrological cycles under climate change, the net effect may significantly
vary by region (Bintanja and Selten, 2014; Huntington, 2006; Kirtman et al.,
2013). Different areas in the Arctic may therefore become either wetter or
drier through the combined effects of atmospheric warming and permafrost
thaw, as well as varying rates of precipitation.</p>
      <p>Several studies have investigated the effects of drainage on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes
in the Arctic (Table 1). Field water table depth (WTD) manipulation
experiments and comparison studies with varying WTD have generally shown
decreased net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake or increased net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission at lower
water levels, primarily due to increased ecosystem respiration
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>; Christensen et al., 2000; Huemmrich et al., 2010; Kim, 2015;
McEwing et al., 2015; Oechel et al., 1998; Olivas et al., 2010; Zona et al.,
2011); in most cases, GPP increased as well. Although some studies have shown
slightly increased net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake when the increase in GPP is larger
than the increase in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> under drier conditions (Natali et al.,
2015), the magnitude of the increase in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is usually larger than
that of GPP (Christensen et al., 2000; Huemmrich et al., 2010; Kim, 2015;
McEwing et al., 2015; Oechel et al., 1998; Olivas et al., 2010; Zona et al.,
2011). The between-site variability of changes in net ecosystem exchange
(NEE) presented in Table 1 can be attributed to differences in the
observation period, vegetation type, as well as the intensity and duration of
WTD changes in the specific studies. Microcosm experiments have also shown
inconsistent results, with a decrease in water level resulting in either
decreased (Johnson et al., 1996) or increased (Peterson et al., 1984) net
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes. These findings exemplify how the net effect of changes in
WTD arise from interactions between multiple factors, and can vary strongly
depending on vegetation and soil types (Billings et al., 1982). Therefore,
although previous studies have shown that WTD reduction affects GPP and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates, the direction and significance of changes in net
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cycling have been found to differ from ecosystem to ecosystem.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux changes (g C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> day<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in
response to a WTD decrease, expressed as either
flux<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>control</mml:mtext></mml:msub></mml:math></inline-formula>–flux<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>lower-WTD</mml:mtext></mml:msub></mml:math></inline-formula> or
flux<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>higher-WTD</mml:mtext></mml:msub></mml:math></inline-formula>–flux<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>lower-WTD</mml:mtext></mml:msub></mml:math></inline-formula>. Negative net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux
rates represent a net increase in terrestrial CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake; positive
changes denote a decrease in net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake by the terrestrial ecosystem
or an increase in terrestrial CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emissions to the atmosphere. The
ranges of these changes are from different years, soil types, and study
sites. Numbers in parentheses represent percent change compared to the
original (control, WTD condition) flux.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Sites</oasis:entry>  
         <oasis:entry colname="col2">WTD change</oasis:entry>  
         <oasis:entry colname="col3">Net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux change</oasis:entry>  
         <oasis:entry colname="col4">Reference</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Coastal plain</oasis:entry>  
         <oasis:entry colname="col2">Drawdown</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>0.59</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>160 %)</oasis:entry>  
         <oasis:entry colname="col4">Huemmrich et al. (2010)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">3 cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>0.23</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>87 %)</oasis:entry>  
         <oasis:entry colname="col4">Olivas et al. (2010)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Up to 3.6 cm lower<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>1.17</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>63 %)</oasis:entry>  
         <oasis:entry colname="col4">Christensen et al. (2000)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">7–7.5cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>0.36</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.4 (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>450 to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>500 %)</oasis:entry>  
         <oasis:entry colname="col4">Oechel et al. (1998)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">8.5 cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>2.99</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>365 %)</oasis:entry>  
         <oasis:entry colname="col4">Kim (2015)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">11.9 cm lower<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>0.41</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>67 %)</oasis:entry>  
         <oasis:entry colname="col4">Zona et al. (2011)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">20 cm lower<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>0.72</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>37 %)</oasis:entry>  
         <oasis:entry colname="col4">McEwing et al. (2015)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Floodplain</oasis:entry>  
         <oasis:entry colname="col2">20–35 cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.06 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>47 %)</oasis:entry>  
         <oasis:entry colname="col4">Merbold et al. (2009)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Moist tundra</oasis:entry>  
         <oasis:entry colname="col2">2.5 cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.02 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3 %)</oasis:entry>  
         <oasis:entry colname="col4">Natali et al. (2015)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Laboratory</oasis:entry>  
         <oasis:entry colname="col2">Saturated  vs.</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.63 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.41 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1716 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>344 %)</oasis:entry>  
         <oasis:entry colname="col4">Johnson et al. (1996)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">field capacity</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">5 cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.61 to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.96 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>59 to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>72 %)</oasis:entry>  
         <oasis:entry colname="col4">Billings et al. (1982)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">10 cm lower</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>2.21</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>184 %)</oasis:entry>  
         <oasis:entry colname="col4">Peterson et al. (1984)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula> WTD difference from natural variation instead of
manipulation. <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Only data from 2008 were used, as this was the only time
when the WTD of the drained area was lower than that of the control area.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> Only from grassland data. <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> Only <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was
considered (no GPP). <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> Only data from 2003 and 2005
were used, as these were the only years when climate conditions were similar.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> Only data from 2013 were used, as this was the only time when the WTD
of the drained area was lower than that of the control area.</p></table-wrap-foot></table-wrap>

      <p>Most of the existing field observation and incubation studies (Table 1) have
focused on the short-term effects of changes in WTD, with a few exceptions
that included permafrost thaw history (Johnston et al., 2014; Schuur et al.,
2009). A further limitation is that most of these studies have been carried
out in North America, despite the fact that permafrost regions in Eurasia not
only cover about twice the area but also contain twice the amount of carbon
as compared to North America (Tarnocai et al., 2009). Drying manipulation
experiments in the Eurasian Arctic with timescales of decades or more will
therefore greatly contribute to understanding drainage effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes in Arctic ecosystems. In addition to these growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes, several studies have highlighted significant contributions of
non-growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emissions to the annual CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> budget in the
Arctic (Coyne and Kelley, 1971; Kelley et al., 1968; Panikov and Dedysh,
2000; Webb et al., 2016; Zimov et al., 1993, 1996). Because of the insulation
provided by snow, soil temperatures (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> remain warmer compared
to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and biological processes may continue throughout the
non-growing season (Kelley et al., 1968; Webb et al., 2016; Zimov et al.,
1993, 1996). Non-growing-season fluxes are also affected by state changes
from water to ice (Mastepanov et al., 2013). However, no studies have yet
compared non-growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes between wet and dry sites.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>A schematic showing how a decade-long drainage installation affects
a floodplain ecosystem and CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes. Drainage of a floodplain
ecosystem alters <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> through changing heat capacity and
thermal conductivity, with increased <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers,
decreased <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deeper layers, and shallower TDs, as well as
decreasing the abundance of wetland grasses while increasing the abundance
of shrubs. These modifications will subsequently affect CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes by
changing the rates of GPP and possibly increasing
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, which consists of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f01.pdf"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Aerial photograph of the site, including schematics of the drained
(bottom left) and the control (top right) transects. Names of plots are
written with numbers and two core plots for more frequent flux measurements
are highlighted in yellow in each transect. Fluxes, vegetation community
structures (created using a non-destructive method), WTDs, and
TDs were measured in all plots, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> were measured
in even-numbered plots only.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f02.png"/>

      </fig>

      <p>As a continuation of hydrological manipulation initiated a decade ago in
northeastern Siberia (Merbold et al., 2009), the present study investigates
how 10 years of drainage have affected ecosystem structure and CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes. By directly comparing CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes of a pristine area to those
from the drained area, our results go beyond a mere description of the
immediate disturbance effects, and clearly point out differences between the
properties of pristine and drained ecosystems. These differences highlight
how the disturbed area has adapted to persistently drier conditions. Our
investigation is focused on shifts in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, thaw depths
(TDs), and vegetation community
structure, as well as how these changes then influence net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> exchange
and its component fluxes, GPP and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. 1). In addition to the
growing season, phenomena during the non-growing season will be also
described; this represents the first drying manipulation experiment of this
nature that extends beyond the growing season.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methodology</title>
<sec id="Ch1.S2.SS1">
  <title>Site description</title>
      <p>The study site is located in a Kolyma River floodplain near Chersky,
northeastern Siberia (also written as Cherskii or Cherskiy). The dominant
vegetation species are tussock-forming <italic>Carex appendiculata</italic> and
<italic>lugens</italic>, and <italic>Eriophorum angustifolium</italic>. An organic peat layer
(15–20 cm deep) has accumulated on top of alluvial material soils (composed
of silty clay), although some organic peat materials can be found within
alluvial layers due to cryoturbation.</p>
      <p>Based on the record filtered by the Berkeley Earth project
(berkeleyearth.org, station ID 169921) for the period 1960–2013, mean
monthly <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the Chersky weather station ranged between
<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>33 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C in January and <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>13 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C in July, and the annual
mean <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. World Meteorological Organization
(WMO) records for the period 1950–1999 indicate a total annual precipitation
of 197 mm, with about half of this falling as rain in summer. Snowmelt at
the site and in the surrounding river basin usually results in a spring
flood. This flooding brings an increased water level of up to 50 cm above
the soil surface in late May or early June, followed by a gradual decrease in
the water level starting in early July. After the flood waters have receded,
the primary water source is precipitation.</p>
      <p>A drainage ring with a <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 200 m diameter and minimum depth of 50 cm
was constructed in fall 2004 (Merbold et al., 2009), to drain water into the
nearest river channel (Ambolikha). As a result, WTD in this drained area is
lowered by 20 cm on average and by up to 30 cm in the growing season
compared to control areas (Merbold et al., 2009). While the spatial range of
drainage effects varies by soil topography, high-resolution land cover
classification (WorldView with 2 m resolution; Richards and Xiuping, 1999)
has indicated a high abundance of vegetation groups dominant in dry areas to
only within 200 m on both sides of the ditch (Burjack et al., unpublished
data); we can therefore limit the drainage effect to this maximum distance.
Starting summer 2013, we measured ecosystem properties and CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes at
two sites in parallel (Fig. 2): the drained area affected by the ditch since
2004 (68<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>36<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>47<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>′</mml:mo><mml:mo>′</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> N, 161<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>20<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>29<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>′</mml:mo><mml:mo>′</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> E), and a control
area (68<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>37<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>00<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>′</mml:mo><mml:mo>′</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> N, 161<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>20<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>59<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>′</mml:mo><mml:mo>′</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> E) approximately
600 m away from the drained area that is not affected by the drainage ditch.
Despite some short-term diurnal fluctuations of up to a few centimeters following
evapotranspiration, as well as precipitation events and water supply from
thawing permafrost, distinct differences in WTD between these treatment areas
persist over the growing season. Each transect of 10 plots in the drained
and control areas (henceforth referred to as drained and control transects,
respectively) was selected using a stratified systematic sampling method.
First, we selected 10 approximate positions with 25 m intervals along the
boardwalks or transects; we then selected the final plots by considering
representative vegetation groups of the selected positions, and by selecting
specimens small enough to fit within flux chambers (Table 2 and Fig. 2). All
plots were located within ca. 2 m of boardwalks to minimize disturbances.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>WTD and vegetation characteristics of plots. Vegetation groups were
created by taking into account only <italic>Carex</italic> sp., <italic>E. angustifolium</italic>, and shrubs when the relative abundance of each species
exceeded 10 %. The relative abundances of consisting plant species (mean
<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD) are separately presented. Average WTD was calculated by pooling all
WTD measurements from both years (mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD), except the period where the
whole area was flooded from snowmelt. When the average WTD of the growing
season was larger than <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10 cm, plots were classified as wet groups.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="left"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Transect</oasis:entry>  
         <oasis:entry colname="col2">Plot ID</oasis:entry>  
         <oasis:entry colname="col3">Vegetation group</oasis:entry>  
         <oasis:entry colname="col4">Vegetation</oasis:entry>  
         <oasis:entry colname="col5">Average</oasis:entry>  
         <oasis:entry colname="col6">WTD</oasis:entry>  
         <oasis:entry colname="col7">Group abbr.</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">no.</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">abundance (%)</oasis:entry>  
         <oasis:entry colname="col5">WTD (cm)</oasis:entry>  
         <oasis:entry colname="col6">group</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Drained</oasis:entry>  
         <oasis:entry colname="col2">0</oasis:entry>  
         <oasis:entry colname="col3">EriophorumShrub</oasis:entry>  
         <oasis:entry colname="col4">90, 10</oasis:entry>  
         <oasis:entry colname="col5">4.6 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.2</oasis:entry>  
         <oasis:entry colname="col6">Wet</oasis:entry>  
         <oasis:entry colname="col7">Drained_wet</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">1, 2, 4</oasis:entry>  
         <oasis:entry colname="col3">CarexEriophorum</oasis:entry>  
         <oasis:entry colname="col4">31 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 23, 64 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 21</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 8.4</oasis:entry>  
         <oasis:entry colname="col6">Dry</oasis:entry>  
         <oasis:entry colname="col7">Drained_dry</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">3, 5, 6, 7, 8, 9</oasis:entry>  
         <oasis:entry colname="col3">Carex</oasis:entry>  
         <oasis:entry colname="col4">82 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 30</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>19.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6.1</oasis:entry>  
         <oasis:entry colname="col6">Dry</oasis:entry>  
         <oasis:entry colname="col7">Drained_dry</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Control</oasis:entry>  
         <oasis:entry colname="col2">0</oasis:entry>  
         <oasis:entry colname="col3">CarexShrub</oasis:entry>  
         <oasis:entry colname="col4">85, 15</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.3 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.3</oasis:entry>  
         <oasis:entry colname="col6">Wet</oasis:entry>  
         <oasis:entry colname="col7">Control_wet</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">1, 3, 6, 7, 8, 9</oasis:entry>  
         <oasis:entry colname="col3">Eriophorum</oasis:entry>  
         <oasis:entry colname="col4">79 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33</oasis:entry>  
         <oasis:entry colname="col5">4.3 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.4</oasis:entry>  
         <oasis:entry colname="col6">Wet</oasis:entry>  
         <oasis:entry colname="col7">Control_wet</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">2</oasis:entry>  
         <oasis:entry colname="col3">EriophorumShrub</oasis:entry>  
         <oasis:entry colname="col4">80, 20</oasis:entry>  
         <oasis:entry colname="col5">3.9 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.1</oasis:entry>  
         <oasis:entry colname="col6">Wet</oasis:entry>  
         <oasis:entry colname="col7">Conrol_wet</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">4, 5</oasis:entry>  
         <oasis:entry colname="col3">CarexShrub</oasis:entry>  
         <oasis:entry colname="col4">71 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 12, 27 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 15</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4.1</oasis:entry>  
         <oasis:entry colname="col6">Dry</oasis:entry>  
         <oasis:entry colname="col7">Control_dry</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>We conducted three field campaigns. The first was 3 weeks, starting on
20 July 2013 (representing the mid-growing season); the second was 4 weeks,
starting on 1 November 2013 (representing the non-growing fall season); and
the third was 10 weeks, starting on 15 June 2014 (representing the growing
season). The non-growing season was defined as the time period when the
average daily <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was below 0 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Although WTD of the
drained transect was generally lower by 20 cm than that of the control
transect after the spring flood in both years, heterogeneous soil topography
rendered varying WTD within each transect: one plot in the drained transect
had an average WTD close to that of wet plots in the control transect, and
two plots in the control transect had an average WTD close to that of dry
plots in the drained transect. Since our objective was to analyze how a
decade-long drainage disturbance affects CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes and its links to
environmental parameters, we categorized 20 plots into four groups –
drained(D)_wet, drained_dry, control(C)_wet, and control_dry – according
to transect and WTD category (Table 2). Plots were classified as “dry” when
the average WTD of the growing season was lower than <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10 cm. In 2013, all
20 plots were observed with equal frequency to investigate spatial
variability among plots; in 2014, four core plots (i.e., one plot from each
group; Table 2) were more frequently observed to highlight temporal
variability over the growing season (Table 2 and Fig. 2). Due to different
lengths of the observation periods between the two years, we divided data
from 2014 into three subseasons to distinguish seasonal variability: (2014.1)
15 June–5 July, (2014.2) 6 July–26 July, and (2014.3) 27 July–20 August.
Subseason 2014.3 and the 2013 field campaign covered similar periods, based
on an analysis of plant phenology with the normalized difference vegetation
index (NDVI), and both periods included peak growing season (i.e., when the
NDVI of the site was the highest).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <?xmltex \opttitle{CO${}_{{2}}$ flux measurements}?><title>CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux measurements</title>
      <p>At each plot, a 60 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 60 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> polyvinyl chloride (PVC) collar
was inserted 15 cm into the ground in late June 2013, 3 weeks before the
first flux measurements. No noticeable plant damage was identified around the
collars after installation, and 3 weeks was expected to provide enough
buffer time for any stabilization needed in the event of minor belowground
damage (Högberg et al., 2001; Parkin and Venterea, 2010). To take the
flux measurements, a transparent chamber (60 cm on each side, made of
4 mm thick plexiglass) was placed on the collar. The chamber had an opening
valve on the top to avoid pressure effects when we placed the chamber onto
the collars. Sensors for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, air humidity, air pressure
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and photosynthetically active radiation (PAR) were attached
to one side of the chamber and all parameters were measured in parallel with
fluxes. These sensors – along with three small fans on a vertical pole
attached in one of the corners, for the purpose of mixing the air inside –
were placed such that their shadows would not bias incoming solar radiation.
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux was measured with a non-steady-state flow-through (i.e., closed
dynamic) method using an Ultra-Portable Greenhouse Gas Analyzer (UGGA, Los
Gatos Research, USA), and all data were recorded at 1 Hz with a CR1000 data
logger (Campbell, USA).</p>
      <p>We restricted each flux measurement to a maximum of 2 min to minimize
saturation effects (i.e., warming and pressurized effects) within the
chamber. In the event of strong incoming radiation, which can cause
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to increase more than 1 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C per minute, we placed ice
packs on the collar rims inside the chamber to keep <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> constant
while measuring fluxes. The number of ice packs was adjusted by observing the
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> changes at 1 Hz frequency. In addition to measuring NEE using
the transparent chamber, in summer we also measured <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> by
covering the chamber with a tarp that blocked incoming radiation. In the
non-growing season we did not find significant differences between NEE and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, probably due to the role of low temperatures, low solar
radiation, and snow cover in limiting photosynthesis; we therefore measured
NEE only with the transparent chamber.</p>
      <p>To calculate the CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux from the observed changes in CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
concentrations ([CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>]) within the sampling time of 2 min, median values
of the [CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>] slopes were computed by selecting multiple time windows
based on a bootstrapping approach, and fluxes
(mg C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were calculated by taking into account
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and the volume and area of the chamber
(Rochette and Hutchinson, 2005). Flux rates that fell outside of the range of
seasonal mean <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>3<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> (i.e., standard deviation) were removed as
outliers. GPP and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are expressed in positive values, indicating
the amount of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> assimilated and respired, respectively. Negative
values for NEE denote net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake by the terrestrial ecosystem, while
positive values denote net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission to the atmosphere.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <?xmltex \opttitle{WTD, TD, and $T_{\text{soil}}$}?><title>WTD, TD, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <p>WTD was measured during each flux measurement using perforated PVC pipes with
a 25 mm diameter, which were installed at each plot. WTD was measured
relative to soil surface, with values larger than 0 cm denoting water
standing above the soil surface. TD was estimated by pushing a measuring pole
into the ground. At every second plot <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> probes were installed
at 5, 15, 25, and 35 cm (Th3-s, UMS, Germany), and data were recorded while
fluxes were measured.</p>
      <p>To investigate the effect of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> on <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, we measured
respiration rates of soils at 0–15 and 15–30 cm depths by aerobically
incubating soils at 15 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C in the laboratory (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> for each
depth). Respiration rates were corrected for bulk density and average
growing-season <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at each 0–15 and 15–30 cm depth of both the
wet and dry plots by assuming a <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mn>10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> value of 2 as the mean for tundra
ecosystems (Zhou et al., 2009). The relative <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rates
between the wet and the dry plots were subsequently compared, and were linked
to changes in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Vegetation community structure</title>
      <p>Changes in vegetation community structure between 2003 (before the drainage
ditch was installed) and 2013 (9 years after the drainage ditch was
installed) were examined using historical data collected in 2003 through the
Terrestrial Carbon Observation System Siberia project (TCOS Siberia; Corradi
et al., 2005). Vegetation community structure was then identified in 2013
along the same transect as in 2003 (which had not been drained in 2003, but
was drained in 2013), as well as in the control transect (newly selected in
2013). Identification was carried out using the same harvest method in all
transects. All living vegetation inside a 1 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> quadrat (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> per transect) was harvested. Collected vegetation was sorted by
species, completely dried at 40 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, and then weighed (g dry biomass
m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Relative abundance of each species (%) was calculated based on
the dry biomass to avoid potential biases linked to the water content of
plants.</p>
      <p>To correlate abundances of plant species with CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes without
destroying plots for further flux observations, we applied a non-destructive
point-intercept method using a 60 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 60 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> quadrat that was
divided into 10 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10 cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> subgrids in 2014. After creating
this grid, we recorded the plant species that a laser pointer hit when
pointed downward at each subgrid intersection, and calculated the percentage
of each species' cover. This analysis was performed within each collar, so
that vegetation community structure of each plot could be linked directly to
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes. As plots were selected using a stratified method (see
Sect. 2.1), this analysis was also performed at a spot 10 m away from each
plot, to confirm that the vegetation community structure of each plot
accurately represented the transects.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Data analysis and interpolation</title>
<sec id="Ch1.S2.SS5.SSS1">
  <?xmltex \opttitle{Interpolation of growing-season CO${}_{{2}}$ fluxes}?><title>Interpolation of growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
      <p>To compare flux variability among plots induced by temporal discrepancies in
sampling, and to visualize the implications of these differences for net
growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake, CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes for each vegetation and WTD
group were interpolated throughout the growing-season observation period. To
simulate CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux rates we adapted a satellite-data-driven CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux
model, the Polar Vegetation Photosynthesis and Respiration Model (PolarVPRM),
which calculates high-latitude NEE by subtracting GPP from <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
(Luus and Lin, 2015):

                  <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mi mathvariant="normal">GPP</mml:mi><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>×</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>W</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:msub></mml:mfenced><mml:mo>×</mml:mo><mml:msub><mml:mi mathvariant="normal">FAPAR</mml:mi><mml:mi mathvariant="normal">PAV</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E1"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mo>×</mml:mo><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="normal">PAR</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">PAR</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PAR</mml:mi></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="normal">T</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">min</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>×</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">max</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mfenced close=")" open="("><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">min</mml:mi></mml:msub></mml:mfenced><mml:mo>×</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">max</mml:mi></mml:msub></mml:mfenced><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi mathvariant="normal">scale</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>a</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">WTD</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="normal">WTD</mml:mi><mml:mi mathvariant="normal">max</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">WTD</mml:mi><mml:mi mathvariant="normal">min</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>b</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>&lt;</mml:mo><mml:mi>a</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>a</mml:mi><mml:mo>+</mml:mo><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is a parameter representing maximum light use
efficiency at low light levels, and PAR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula> represents the half-saturation
value of PAR. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>scale</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mtext>scale</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are scaling variables
ranging between 0 and 1 that reflect the influence of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
water availability, respectively, on photosynthesis. The set of three
parameters required for calculating <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>scale</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, i.e., <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>min</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> were set to 0, 40, and 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C
according to literature recommendations to avoid the parameter instability
that would arise from empirically fitting these parameters, due to the strong
positive correlations between <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and PAR (Mahadevan et al.,
2008). FAPAR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>PAV</mml:mtext></mml:msub></mml:math></inline-formula> is the fraction of PAR absorbed by the vegetation,
and is calculated using the Moderate Resolution Imaging Spectroradiometer
(MODIS) Enhanced Vegetation Index (EVI).</p>
      <p>Site-level meteorological observations of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and PAR were used as
inputs for PolarVPRM; these observations were taken from sensors installed in
the chamber system (for calibration) and from nearby meteorological towers
(for temporal interpolation; Fig. 2). The influence of water availability on
photosynthesis (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mtext>scale</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was calculated based on WTD determined next
to each plot at the time of flux measurement, with an optimized scaling
factor (<inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>) to obtain the best fits between GPP<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>modeled</mml:mtext></mml:msub></mml:math></inline-formula> and
GPP<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>observed</mml:mtext></mml:msub></mml:math></inline-formula>.</p>
      <p>Both parameters (<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and PAR<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were fitted empirically
in R (R Core Team, 2013). PAR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula> was obtained from the curve fit between
GPP and PAR measured with flux observations using the nonlinear least squares
curve fitting in R (R Core Team, 2013); <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> was calculated as
the slope of the linear regression of observed GPP, and of GPP calculated
from Eq. (1). GPP was estimated excluding PAR terms for CarexEriophorum in
2013 because no positive relationship between GPP and PAR was found (see
Sect. 3.3.2). GPP was then computed half-hourly using linearly interpolated
WTD and EVI, as well as half-hourly measured <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and PAR from the
meteorological station.</p>
      <p><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was calculated using an empirical <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mn>10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> model:
              <disp-formula id="Ch1.E4" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">eco</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>×</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>×</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            The two free parameters in this exponential relationship between
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>, were empirically
calculated from chamber-based measurements of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> using nonlinear least squares curve fitting in R (R Core
Team, 2013). Once these coefficients were calculated, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was
calculated at half-hourly intervals with half-hourly-averaged <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
from the meteorological station at each transect.</p>
      <p>Parameter optimization and flux interpolation were carried out separately
across four core plots for the year 2014, while 10 plots from each transect
were categorized into three vegetation groups and pooled for the year 2013.
These vegetation categories took into account only <italic>Carex</italic> sp.,
<italic>E. angustifolium</italic>, and shrubs when the relative abundance of each
species exceeded 10 % (Table 2). The categorized vegetation groups of the
drained transect were EriophorumShrub, CarexEriophorum, and Carex, while those
of the control transect were CarexShrub, Eriophorum, and EriophorumShrub
(Table 2). The period of interpolation was restricted to the observation
periods within each year because WTD (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mtext>scale</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was not measured
continuously outside of this period. The discrepancies between the observed
and modeled fluxes were calculated using root mean squared error (RMSE) and
mean bias error (MBE). All data points that were used for calibration were
utilized for the error estimates due to the limited number of data points.</p>
      <p>Uncertainty ranges of the interpolated fluxes were calculated using cross
validation by creating 2000 data subsets consisting of randomly selected data
points (bootstrapping, 80 % of the total data set). To obtain an error
range of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, the 2000 resulting pairs of parameters, and,
subsequently, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> were computed for each
1 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> bin. Similarly, 2000 pairs of PAR<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> were estimated for binned PAR. The range of GPP was subsequently
estimated by including the rest of the terms from Eq. (1). To constrain the
uncertainty ranges of the interpolated fluxes, we took the GPP and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> error ranges at each point from the corresponding PAR and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> bin, respectively, that reflected the current condition.
Because NEE is calculated as the difference of GPP and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>,
uncertainty ranges were also determined by adding the two error ranges of GPP
and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. For CarexEriophorum and EriophorumShrub groups in 2013 –
for which no positive relationship between GPP and PAR was found or the
number of data points was not enough to produce uncertainty ranges,
respectively – the bootstrapping step was skipped.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p><bold>(a)</bold> Spatial variability in WTDs and TDs measured across the two transects on 10 August 2013. Plots are
indicated with squares (core plots indicate closed squares). The letters W and D
indicate the wet and dry WTD category of each plot, respectively. <bold>(b)</bold> Temporal variability in WTD and TD observed at the four core plots over the
growing season of 2014, separated by transect (columns) and WTD category
(rows).</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f03.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS5.SSS2">
  <title>Statistical analysis</title>
      <p>Spatial differences in the 2013 WTD and TD between the two transects were
tested using an independent <inline-formula><mml:math display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test. A permutational multivariate analysis
of variance (PERMANOVA) was performed to compare vegetation community
structure between the drained and the control transects of 2013 and 2003.
Data from 2014 were not compared with those from 2003 due to the different
experimental methods employed. A two-way analysis of covariance (ANCOVA) was
carried out with WTD category (wet and dry) and depth as independent
variables, to compare <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> between WTD categories. Correlations
between WTD and TD were tested by taking values from August of each year when
TD was the deepest and the effects of WTD were strongest.</p>
      <p>To see if vegetation groups affected the 2013 fluxes, all fluxes were
aggregated by vegetation group (see Sect. 2.5.1; Table 2) and a one-way
analysis of variance (ANOVA) was performed for each vegetation group as an
independent variable. When independent variables significantly influenced
dependent variables, Tukey's post hoc test was applied. To investigate
whether vegetation group and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> significantly affected the
non-growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes, one-way ANOVA and multiple linear
regressions were performed, respectively. A multiple linear regression
analysis was also performed to identify additional major environmental
drivers for cold-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes. For multiple linear regression
analyses, significant variables were defined based on the Bayesian
information criterion (BIC); with these selected variables the best-fit
regression models were identified, based on the Akaike information criterion
(AIC). All statistical analyses were performed using R (R Core Team, 2013).</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>WTD changes from drainage</title>
      <p>Following flooding due to snowmelt in early June, the drainage ditch
effectively lowered WTD in the drained transect. Average differences in WTD
between the two transects were significant with a mean drop of approximately
20 cm, and a maximum difference of up to 30 cm during a 3-week period
in summer 2013 (independent <inline-formula><mml:math display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn>4.55</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>d</mml:mi><mml:mi>f</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 17.91; Fig. 3a). Approximately the same difference in mean WTD
was observed in the middle of the 2014 growing season. However, several
significant rainfall events from late July of 2014 triggered an increase in
WTD in the dry plots, especially in the drained transect (Fig. 3b). The
amount of precipitation was similar at both transects, but WTD for some
drained_dry plots was more susceptible to increases in WTD compared to
control_dry plots; this was because the width of the area within the
drainage ring was 3 times larger than that of the elevated areas of
control_dry plots. In addition, drainage may slow when the water level rises
within the drainage ditch due to the obstruction of water flow by taller
vegetation – <italic>E. angustifolium</italic> and aquatic plants – at the end of
the growing season (Allan, 1995; Green, 2005). As a result, WTD in
drained_dry plots stayed high longer than in the control transect following
heavy rainfalls. Similar patterns were also observed in 2005, 1 year after
the drainage ditch was installed (Merbold et al., 2009). Nonetheless, WTD
difference between the wet and the dry plots showed distinct patterns. In the
long term, it can be speculated that new drainage pathways will be
established, which will lead water away more effectively after precipitation
events, and thus reduce the fluctuations in WTD we observed at our site.
Transferring our findings to a natural disturbance (e.g., the formation of a
connected system of troughs following ice-rich permafrost thaw), we expect
that water drainage will be more effective than our drainage manipulation, as
thawing permafrost following persistently warmer conditions will induce more
pronounced topographical changes (Jorgenson et al., 2006; Liljedahl et al.,
2016; O'Donnell et al., 2011).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <?xmltex \opttitle{Shifts in $T_{\text{soil}}$ and TD and their effects on CO${}_{{2}}$ fluxes}?><title>Shifts in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and TD and their effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
<sec id="Ch1.S3.SS2.SSS1">
  <?xmltex \opttitle{$T_{\text{soil}}$ and TD}?><title><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and TD</title>
      <p>Our two-way ANCOVA indicated that drainage resulted in both stronger diurnal
fluctuations in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers and colder <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
in deep layers, as compared to the wet plots (Table 3 and Fig. 4). This
finding highlights the important role of water content in the thermal
properties of organic soils, with the soil of shallow layers of the dry plots
tending to heat up more easily during the daytime due to the reduced heat
capacity of dry organic soil (Abu-Hamdeh, 2003; Idso et al., 1975; Lakshmi et
al., 2003; Reginato et al., 1976). At the same time, these dry organic soils
also have lower thermal conductivity, limiting downward heat transfer; as a
result, deeper layers remained colder than soil at the same depth in the wet
plots (Abu-Hamdeh, 2003). This mechanism reduced TD in the dry plots, the
effect of which became more distinct at the end of the growing season due to
the continued effects of WTD (Fig. 5). The positive correlations between WTD
and TD in August clearly show this trend (for 2013: <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn>0.47</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>; for 2014: <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn>0.67</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; Fig. 5).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> profiles based on observations at 5, 15, 25, and
35 cm depths from even-numbered plots each in the drained (top) and the
control (bottom) transects. Boxplot contains median, 25 and 75 %
quartiles, and <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1.5 interquartile ranges. To minimize the impact of the
diurnal temperature cycle on this temporally discontinuous data set, the time
window for averaging was restricted to 13:00–17:00 LT. Panels from left to right
show data from 2013, as well as from three subseasons of the growing season
of 2014: (2014.1) 15 June–5 July, (2014.2) 6–26 July, and (2014.3)
27 July–20 August. Data subsets where significant differences in WTD between
the wet and the dry plots were detected are marked with asterisks (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula>
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>).</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f04.pdf"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Correlations of TDs and WTDs in
mid-August 2013 and 2014. Error bars of WTD represent the minimum and the
maximum ranges of WTD of the previous 20 days. Results of correlation
analysis for each year are presented with black lines.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f05.pdf"/>

          </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p>ANCOVA results with WTD category (wet and dry), and soil depth (cm) as the independent
variables and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) as the dependent variable. The
time periods of the entire year 2013, as well as three subseasons of 2014
– (2014.1) 15 June–5 July, (2014.2) 6–26 July, and (2014.3) 27 July–20
August – were separately analyzed. The significance of <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> values are
denoted with asterisks (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>&lt;</mml:mo><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula>
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Transect</oasis:entry>  
         <oasis:entry colname="col3">WTD</oasis:entry>  
         <oasis:entry colname="col4">Depth</oasis:entry>  
         <oasis:entry colname="col5">WTD <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">Depth</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">2013</oasis:entry>  
         <oasis:entry colname="col2">Drained</oasis:entry>  
         <oasis:entry colname="col3">12.75<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">602.64<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">13.38<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Control</oasis:entry>  
         <oasis:entry colname="col3">15.38<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">700.93<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">2.64</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2014.1</oasis:entry>  
         <oasis:entry colname="col2">Drained</oasis:entry>  
         <oasis:entry colname="col3">3.54</oasis:entry>  
         <oasis:entry colname="col4">169.46<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Control</oasis:entry>  
         <oasis:entry colname="col3">32.55<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">165.35<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">29.56<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2014.2</oasis:entry>  
         <oasis:entry colname="col2">Drained</oasis:entry>  
         <oasis:entry colname="col3">26.21<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">400.48<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">0.52</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Control</oasis:entry>  
         <oasis:entry colname="col3">1.24</oasis:entry>  
         <oasis:entry colname="col4">380.91<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">2.42</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2014.3</oasis:entry>  
         <oasis:entry colname="col2">Drained</oasis:entry>  
         <oasis:entry colname="col3">101.87<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">680.50<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">7.55<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Control</oasis:entry>  
         <oasis:entry colname="col3">6.49<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">813.62<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">4.91 *</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <?xmltex \opttitle{$T_{\text{soil}}$ and TD effects on CO${}_{{2}}$ fluxes}?><title><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and TD effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
      <p>GPP and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates increased with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 5 cm (Fig. 6)
because warmer <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> generally accelerates both photosynthesis
(Lawrence and Oechel, 1983; Schwarz et al., 1997) and root respiration (Boone
et al., 1998). The average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates of the dry plots were
25 % higher than those of the wet plots in 2013 (independent <inline-formula><mml:math display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn>5.70</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>d</mml:mi><mml:mi>f</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 532) despite the fact that GPP
rates were found to be lower in the dry plots, meaning that lower
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rates would have been expected (Fig. 6). This increase in the
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates can be partly explained by the increased rates of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> under more aerobic conditions following drainage: as anaerobic
respiration is slower and less efficient than aerobic respiration, carbon
release from both organic and mineral soils (surface and deep soil layers,
respectively) under aerobic conditions can be 4–10 times higher than under
anaerobic conditions (Lee et al., 2012). However, drier conditions altered
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> regimes, and these effects further affected <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
rates.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Links between average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 5 cm and <bold>(a)</bold>
GPP and <bold>(b)</bold> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates by transect (column). Data are from 2013
(20 July–10 August) and subseason 2014.3 (27 July–20 August); both cover
similar phenological periods. Data were grouped into temperature bins of
5 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f06.pdf"/>

          </fig>

      <p>Modifications in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers had greater impacts on
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> than those in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deep layers: the warmer
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers of the dry plots increased <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> by
240 %, while colder <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deep layers reduced <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
only marginally as compared to the wet plots. Combining these two contrasting
effects, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rates in dry plots were elevated by 95 % as a
result of the stronger effects of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers as
compared to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deep layers on compacted peat soils. This
increase was largely due to a greater amount of organic carbon – an
increased total carbon content by 11 % as well as more compacted soil
with an increase in bulk density by 44 % (data not shown) – in the dry
plots affected by warmer <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers. Contrary to the
accelerated respiration rates at the surface, colder <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deep
layers and reduced TDs imply that carbon currently stored in
permafrost can be preserved following drainage. In addition to these
contrasting effects, another opposing influence of the physical structures of
vegetation on <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> – for example, the negative relationship
between shrub abundance and TD due to shade (Blok et al., 2010) and the
positive relationship between shrub abundance and TD due to decreased albedo
(Bonfils et al., 2012) – with continuously changing vegetation communities
following drainage (see Sect. 3.3) need to be monitored over a longer period
of time to gain further insight into the net impact of secondary drainage on
carbon accumulation and CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <?xmltex \opttitle{Shifts in vegetation community structure and its effects on CO${}_{{2}}$
fluxes}?><title>Shifts in vegetation community structure and its effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes</title>
<sec id="Ch1.S3.SS3.SSS1">
  <title>Vegetation community structure</title>
      <p>In its natural, undisturbed state, the vegetation community of this
floodplain has historically been dominated by <italic>Eriophorum angustifolium</italic>, followed by <italic>Carex appendiculata</italic> and <italic>lugens</italic>.
This vegetation community structure was reflected in the observations made in
2003 (Corradi et al., 2005) – that is, before the drainage ditch was
constructed (Fig. 7, black) – as well as in the control transect in 2013
(Fig. 7, blue). After a decade of drainage, the abundance of <italic>E. angustifolium</italic> decreased, while shrubs (<italic>Betula</italic> <italic>exilis</italic>, and
<italic>Salix</italic> <italic>fuscescens</italic> and <italic>pulchra</italic>) and <italic>Carex</italic>
sp. became the dominant species in the drained transect (Fig. 7, red). While
no statistically significant differences were found between the vegetation
community structures in 2003 and in the control transect of 2013 (PERMANOVA,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mn>1.62</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>=</mml:mo><mml:mn>0.19</mml:mn></mml:mrow></mml:math></inline-formula>), significant differences were found between both the
2003 and the drained transect of 2013 (PERMANOVA, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mn>3.31</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>) and between the two transects of 2013 (PERMANOVA, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mn>5.22</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>). Although we did not experimentally compare the two
observation methods (see Sect. 2.4), a qualitative comparison of results from
2013 (i.e., harvest) and 2014 (i.e., point intercept) showed a similar
abundance of each species; this implies that these two different methods can
be used to compare vegetation community structures.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Abundances of vegetation species observed across the transects in
2003 and 2013. Numbers in parentheses are the number of replicates. Boxplot
contains median, 25  and 75 % quartiles, and <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1.5
interquartile ranges. Betul: <italic>Betula exilis</italic>, Calam:
<italic>Calamagrostis purpurascens</italic>, Carex: <italic>Carex</italic> species, Chama:
<italic>Chamaedaphne calyculata</italic>, Eriop: <italic>Eriophorum angustifolium</italic>,
Poten: <italic>Potentilla palustris</italic>, Salix: <italic>Salix</italic> species.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f07.pdf"/>

          </fig>

      <p>In the control transect, the vegetation community structures of the wet and
the dry plots were dominated by <italic>E. angustifolium</italic> and <italic>Carex</italic>
sp., respectively, but some dry plots within the drained transect showed a
vegetation transition stage (Table 2). Plots in the drained transect that
were categorized as CarexEriophorum (Table 2) showed a mixture of young
<italic>Carex</italic> sp. (without discrete tussock forms or small developing
tussocks) and short and thin <italic>E. angustifolium</italic>. The presence of this
mixture implies that these areas were formerly dominated by <italic>E. angustifolium</italic>, which is abundant in water-saturated areas, but whose
abundance decreased due to drainage. The core plots that were selected based
on drainage manipulation and WTD category represented this vegetation shift
well; control_wet and drained_wet were dominated by <italic>E. angustifolium</italic>, control_dry was dominated by <italic>Carex</italic> sp. and shrubs,
and drained_dry showed a transition stage from <italic>E. angustifolium</italic> to
<italic>Carex</italic> sp. (Table 2).</p>
      <p>We underestimated the abundance of shrubs (<italic>B. exilis</italic> and
<italic>Salix</italic> sp.) within the collars in the drained transect as a result of
the methodological choice to exclude tall shrubs when selecting plots to
ensure that all of the vegetation could fit into the chambers when measuring
fluxes (note that these results are presented to compare CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes by
vegetation group; see Sect. 2.4). The abundance of shrubs within the collars
of the drained transect was 2 % on average, while independently
investigated average abundance along the transect was 20 % on average.
This discrepancy will be taken into account in the following sections when
interpreting the effects of shrubs on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <?xmltex \opttitle{Vegetation effects on CO${}_{{2}}$ fluxes}?><title>Vegetation effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
      <p>Chamber-based CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux measurements during the 2013 growing season
showed similar mean and standard deviations of NEE, GPP, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
rates between the two transects (Fig. 8). However, fluxes showed a large
variability across plots within each transect (each of which was
ca. 225 m), which results from one-way ANOVA indicated to be closely
linked to the dominant vegetation groups (NEE: <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mn>24.99</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; Fig. 8a). <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> also differed by dominant vegetation group,
but this difference was not as pronounced as it was for GPP (GPP: <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mn>11.23</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>: <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mn>3.63</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>;
Fig. 8b, c).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p><bold>(a)</bold> Variability of NEE among individual
plots during the 2013 growing season. Boxplot contains median, 25  and
75 % quartiles, <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1.5 interquartile ranges, as well as mean values
with cross points per plot. The black horizontal bars show the mean flux
rates averaged for the entire transect. <bold>(b)</bold> GPP
and <bold>(c)</bold> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates aggregated by the vegetation
group. Significance of differences between groups, determined by one-way
ANOVA and Tukey's post hoc test, is indicated by the letters. Different
letters indicate significant differences between groups while the same
letters indicate significant similarities.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f08.pdf"/>

          </fig>

      <p>One of the vegetation effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes was that,
<italic>Eriophorum</italic>-dominated plots in both transects had higher rates of
photosynthetic uptake than <italic>Carex</italic>-dominated plots. GPP rates of
EriophorumShrub were 55 % higher than those of Carex in the drained
transect, and those of EriophorumShrub and Eriophorum were 20 % higher
than those of CarexShrub in the control transect in 2013 (Fig. 8b). In 2014,
conversely, GPP rates of CarexShrub were 5 % higher than those of
EriophorumShrub in the control transect, but this difference was
insignificant (Table 4). Thus, the decrease in <italic>E. angustifolium</italic> as a
result of drainage generally reduced carbon accumulation in the terrestrial
ecosystem. CarexEriophorum plots in the drained transect – which represent a
vegetation transition from <italic>E. angustifolium</italic> to <italic>Carex</italic> sp.
following drainage – showed the lowest GPP rates in both years, despite the
presence of <italic>E. angustifolium</italic> (Fig. 8b). In this transition stage
(which is characterized here by declining <italic>E. angustifolium</italic>) or in
early succession stages, plants assimilate less CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> than they previously
did due to lower biomass, and can be more susceptible to disturbances (Chapin
et al., 2012b; Niinemets, 2010). The dry and warm year of 2013 was an
especially good example of this process: these plots showed slightly
decreased GPP rates along with increasing PAR (Fig. S1 in the Supplement),
implying that the combination of high PAR and high <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> caused
water stress to plants. Under the same climate conditions, CarexShrub in the
control transect – which can be considered to be the potential vegetation
communities of CarexEriophorum groups – took up significantly less CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
than in 2014, but did not show decreasing GPP rates (Fig. S1). This implies
that when <italic>E. angustifolium</italic> is fully replaced by <italic>Carex</italic> sp.
and shrubs, the current CarexEriophorum plots may not undergo water stress as
easily as they currently do although they can be still strongly influenced by
climate. Taking into account such transition effects after 10 years of
drainage is important given that the fraction of these areas of the total
area – 3 out of 10 plots – is not small. Moreover, this finding highlights
the fact that ecosystem adaptation to new environmental conditions may take a
long time, as 10 years was evidently not sufficient for this ecosystem to be
resistant to disturbances, e.g., harsh climate conditions.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><caption><p>Average daily flux (g C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> day<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from
interpolation for the period of 22 July–10 August (20 days) in both 2013
and 2014. Values in parentheses are cumulative flux (g C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
for the period of 22 July–10 August (20 days) in 2013 and 16 June–20 August
(66 days) in 2014. Results represent the fits of all data points
<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD from bootstrapping. NEE was calculated by
subtracting GPP from <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>: positive values are net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission to the
atmosphere, and negative values are net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake by the terrestrial
ecosystem.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Year</oasis:entry>  
         <oasis:entry colname="col2">Group</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">GPP</oasis:entry>  
         <oasis:entry colname="col5">NEE</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">2013</oasis:entry>  
         <oasis:entry colname="col2">D_Carex</oasis:entry>  
         <oasis:entry colname="col3">2.03 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.10 (41 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2)</oasis:entry>  
         <oasis:entry colname="col4">3.42 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.00 (68 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.38 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.09 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>28 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">D_CarexEriophorum</oasis:entry>  
         <oasis:entry colname="col3">1.89 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.16 (38 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3)</oasis:entry>  
         <oasis:entry colname="col4">3.30 (66)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.41 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.24 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>28 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">D_EriophorumShrub</oasis:entry>  
         <oasis:entry colname="col3">1.88 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.53 (38 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 11)</oasis:entry>  
         <oasis:entry colname="col4">4.81 (96)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.93 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.34 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>59 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">C_CarexShrub</oasis:entry>  
         <oasis:entry colname="col3">2.04 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.08 (41 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2)</oasis:entry>  
         <oasis:entry colname="col4">2.55 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.02 (51 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.51 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.05 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">C_Eriophorum</oasis:entry>  
         <oasis:entry colname="col3">1.76 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.05 (35 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1)</oasis:entry>  
         <oasis:entry colname="col4">3.41 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.01 (68 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.65 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>33 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">C_EriophorumShrub</oasis:entry>  
         <oasis:entry colname="col3">2.34 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.17 (47 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3)</oasis:entry>  
         <oasis:entry colname="col4">3.32 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.00 (66 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.98 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.14 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2014</oasis:entry>  
         <oasis:entry colname="col2">D_wet <?xmltex \hack{\hfill\break}?>(EriophorumShrub)</oasis:entry>  
         <oasis:entry colname="col3">3.27 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.16 (184 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9)</oasis:entry>  
         <oasis:entry colname="col4">7.59 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.11 (404 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.31 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.05 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>221 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">D_dry <?xmltex \hack{\hfill\break}?>(CarexEriophorum)</oasis:entry>  
         <oasis:entry colname="col3">3.51 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.19 (200 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9)</oasis:entry>  
         <oasis:entry colname="col4">5.14 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.07 (274 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.64 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.11 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>74 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">C_wet <?xmltex \hack{\hfill\break}?>(EriophorumShrub)</oasis:entry>  
         <oasis:entry colname="col3">2.81 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.24 (162 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 14)</oasis:entry>  
         <oasis:entry colname="col4">5.85 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.03 (312 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.05 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.21 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>150 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 13)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">C_dry  (CarexShrub)</oasis:entry>  
         <oasis:entry colname="col3">3.98 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.21 (222 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 12)</oasis:entry>  
         <oasis:entry colname="col4">6.20 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.03 (331 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.22 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.18 (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>109 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 10)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> As no bootstrapping was conducted on data for GPP, error range in NEE
is only from <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p></table-wrap-foot></table-wrap>

      <p>Increasing shrub abundance slightly compensated for lowered GPP rates in
drained areas following a reduction in <italic>E. angustifolium</italic> coverage.
EriophorumShrub of the control transect, which had 10 % shrub coverage,
had, on average, 4 % higher GPP rates than Eriophorum in 2013, although
this difference was not significant (Fig. 8b). This difference is expected to
be larger if the abundance of shrubs was not underestimated (see
Sect. 3.3.1). Also, this compensation may become larger with increasing
abundance and biomass of shrubs following continuing drainage. Increasing the
abundance of shrubs not only changes carbon exchange rates between the
atmosphere and the terrestrial ecosystem but also carbon storage patterns
within the terrestrial ecosystem (Shaver and Jonasson, 2001). In the drained
transect, living aboveground biomass – the sum of leaf and stem – was
larger than in the control transect, and in 2003, while the biomass of green
leaves decreased, that of stems increased, mostly due to the increased
abundance of shrub species (Fig. S2). When shrubs continue to expand, a large
portion of carbon will be stored in plants, especially in shrubs' stems, and
the proportion of litter added to the soil will decrease accordingly
(Fig. S2). The subsequent effects of these changes, such as litter quantity
and quality added to soils and its decomposability (Hobbie, 2008; Schädel
et al., 2014), need to be further investigated to better understand long-term
vegetation effects on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS4">
  <?xmltex \opttitle{Growing-season CO${}_{{2}}$ fluxes}?><title>Growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
<sec id="Ch1.S3.SS4.SSS1">
  <?xmltex \opttitle{Gap-filled growing-season CO${}_{{2}}$ fluxes}?><title>Gap-filled growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
      <p>The modeled fluxes for both 2013 and 2014 had similar patterns to the
observed fluxes: <italic>Eriophorum</italic>-dominated plots (i.e., wet plots)
generally showed higher GPP rates than <italic>Carex</italic>-dominated plots (i.e.,
dry plots) in both transects (Table 4). In addition, the 10 % difference
in shrub cover between Eriophorum and EriophorumShrub from the control
transect did not significantly affect GPP rates (Table 4). <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
rates were consistently greater in the dry plots, in part due to increased
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rates, and the cumulative <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> increased with
drainage by 5 % in 2013 and by 10 % in 2014 (Table 4). Combining the
effects of vegetation and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> on GPP and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates,
the net effects of drainage on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes (NEE) was <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.3 g
C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> day<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (i.e., 25 % more CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake) in 2013
and <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.98 g C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> day<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (i.e., 35 % less CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
uptake) in 2014 when daily CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes of 20 days, weighted by the number
of plots of each group, were compared (Table 4). This range was comparable to
other drainage studies presented in Table 1. However, the net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux
changes were in opposite directions in these two years due to control_dry
(CarexShrub) plots' sensitivity to dry and warm conditions during the 2013
observation periods (see Sect. 3.3.2), as well as pooling of the wet and the dry
plots to compare changes in flux rates for transect level. Despite the
variability between years for transect level, patterns of underlying
processes were consistent: after 10 years of drying manipulation, the
replacement of <italic>E. angustifolium</italic> by <italic>Carex</italic> sp., more aerobic
conditions, and increased <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers all weakened
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake and increased CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission (Table 4).</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS4.SSS2">
  <title>Model error from interpolation</title>
      <p>Comparing observed against modeled flux rates for all individual measurements
in the database, the mean RMSE of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was 0.009 and 0.007 mg
C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for 2013 and 2014, respectively, and that of
GPP was 0.021 and 0.016 mg C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for 2013 and 2014,
respectively (Table S1 in the Supplement). Low uncertainty ranges imply that variations in
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and GPP can be mainly explained by <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and PAR,
respectively. The uncertainty ranges of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> were large compared to
those of GPP (Table S1), suggesting that <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates varied with
factors other than <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, while GPP rates mostly varied with PAR.
Larger RMSE and MBE in the drained transect in 2013 compared to the control
transect can be attributed to the pooling of data points by vegetation group,
as well as to the limited number of data points; the large error in GPP for
the Carex group of the drained transect can be attributed to varying standing
biomass, and that of the EriophorumShrub in the drained transect stems from
the small number of data points (Table S1). In 2014, data points for each
group came from only a single plot, but varying WTD and thickening TD
over the growing season resulted in relatively large errors (Table S1).</p>
</sec>
</sec>
<sec id="Ch1.S3.SS5">
  <?xmltex \opttitle{Non-growing-season CO${}_{{2}}$ fluxes}?><title>Non-growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes</title>
      <p>Due to the low <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and weak solar radiation, GPP in the
non-growing season was negligible. Although a limited amount of
photosynthetic activity could have theoretically taken place during this time
(Atanasiu, 1971), no significant differences were found between NEE and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, implying that CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes consisted mostly of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
released from the soil. The drained transect emitted an average of 4 times
more CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> than the control transect: if the observed flux pattern is
representative of the entire month of November, the net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission of
this month would be 11 g C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the drained transect and
3 g C-CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the control transect.</p>
      <p>Some plots in the drained transect showed sporadically high fluxes, the rates
of which were comparable to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates from the growing season
(Fig. 9). These high fluxes in the drained transect could be linked to
vegetation groups, especially the abundance of <italic>E. angustifolium</italic>, as
well as to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (multiple linear regression,
adj. <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.46</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 5 cm, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <italic>Eriophorum</italic>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 5 cm, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>×</mml:mo></mml:mrow></mml:math></inline-formula> <italic>Eriophorum</italic>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>). This may be a part of the physical processes outlined by Mastepanov
et al. (2008, 2013), through which
the freezing of soil pushes stored CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> gases in soil to the
atmosphere through cracks in soil or dead plant bodies. Although
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> between 0 and 35 cm was consistently below zero,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 35 cm did not fall below <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until the end
of November. Ongoing freezing at greater depths than 35 cm and low
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> could have stimulated CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission from the soil to the
atmosphere through dead <italic>E. angustifolium</italic>. The fact that the CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes were influenced by <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> implies that high CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
emissions were not exclusively triggered by the physical expression of
existing CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in soils, but also from ongoing respiration at relatively
mild <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> insulated by snow (Kelley et al., 1968; Webb et al.,
2016; Zimov et al., 1993, 1996). CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes in the control transect were
also influenced by the abundance of <italic>E. angustifolium</italic>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (multiple linear regression, adj. <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.21</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 5 cm, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>;
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 15 cm, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 25 cm, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>; <italic>Eriophorum</italic>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.05</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at
5 cm <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <italic>Eriophorum</italic>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
at 15 cm <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <italic>Eriophorum</italic>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>;
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> at 25 cm <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <italic>Eriophorum</italic>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>), but the rates were relatively constant over time and without high
sporadic fluxes, unlike in the drained transect (Fig. 9).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p>Change in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and NEE from
November 2013 by vegetation type. Changes in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> refer to changes
within 6 h before individual NEE was measured.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4219/2016/bg-13-4219-2016-f09.pdf"/>

        </fig>

      <p>Although the CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes in the non-growing season were partially
explained by vegetation group, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, the
amount of variation (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> together explained by these factors was low. We
also cannot firmly conclude that the observed sporadic high CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes
in November were largely driven by these factors, because we did not observe
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes continuously along with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>; what is more, these
high CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes were only observed in the drained transect despite there
being similar conditions in the control transect. High uncertainties and
limitations in predicting both non-growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes and
possible high CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes during the thawing season (Friborg et al.,
1997) need to be addressed to determine the net effects of drainage on the
annual CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes of this site. Nevertheless, the observed considerably
higher CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes in the non-growing season for the drained transect
imply that drainage not only affects growing-season CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes but also
has the potential to alter non-growing-season fluxes significantly.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusion and final remarks</title>
      <p>Drainage of a floodplain near Chersky resulted in an average WTD drop of
20 cm. This substantially altered both biogeophysical and biogeochemical
ecosystem properties over the span of a decade, with profound net impacts on
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes. The first change important for CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> processes was that
vegetation community structure in the drained areas shifted significantly
toward increased <italic>Carex</italic> sp. and shrubs (<italic>B. exilis</italic> and
<italic>Salix</italic> sp.) and decreased <italic>E. angustifolium</italic>. The second
change was that WTD variation led to divergent <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> profiles by
depth, with the drained areas showing greater fluctuations in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
in shallow layers due to their low heat capacity, and with deeper soil
demonstrating colder <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> due to the low thermal conductivity of
the dry soil above it. Consequently, the drained areas had shallower TDs compared to the control areas.</p>
      <p>These aboveground and belowground changes significantly affected CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes. The drained areas showed higher <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>eco</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> due to more aerobic
conditions, with a greater amount of organic carbon affected by warmer
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in shallow layers. Dominant plant species in the drained
areas took up less CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (i.e., <italic>Carex</italic> sp. engaged in less GPP)
than <italic>E. angustifolium</italic>, which is dominant in the control wet areas.
Increased abundance of shrubs slightly compensated for the decrease in GPP,
but, in our data sets, it could not fully balance out the losses. Overall,
drainage increased net CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake (NEE) by 25 % in 2013 but
decreased it by 35 % in 2014 during the 20 days of the growing season
when the two transects were compared. The opposite patterns of the two years
can be attributed to control_dry plots, which showed large variations with
climate. Despite the inter-annual variability, both years had consistent
trends toward the replacement of <italic>E. angustifolium</italic> with
<italic>Carex</italic> sp., more aerobic conditions, and increased <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in
shallow layers, all of which weakened CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake and increased CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
emission. In the non-growing season, CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission was 4 times larger
in the drained than in the control areas, partially as a result of the
abundance of <italic>E. angustifolium</italic>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>Ecosystem changes after 10 years of drainage on an Arctic floodplain
decreased CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> uptake and increased CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission in both the growing
and non-growing seasons. These findings highlight the importance of
considering the changes in ecosystem properties under persistent dry
conditions when investigating CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fluxes in response to global climate
changes. As ongoing global warming thaws ice-rich permafrost and makes some
regions drier, Arctic wetlands may accumulate less carbon in the terrestrial
ecosystem, respire more CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> from shallow soil layers, and preserve
carbon in deep soil layers. Given that vegetation communities continue
changing after 10 years, with different areas then responding differently to
climates, further observations of this site, as well as of other ecosystems
in the Arctic, are needed over a longer term to better predict the fate of
the Arctic in the face of global climate changes.</p>
</sec>
<sec id="Ch1.S5">
  <title>Data availability</title>
      <p>Data are available upon request (mkwon@bgc-jena.mpg.de).</p>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-13-4219-2016-supplement" xlink:title="zip">doi:10.5194/bg-13-4219-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><ack><title>Acknowledgements</title><p>This work has been supported by the European Commission (PAGE21 project,
FP7-ENV-2011, grant agreement no. 282700, and PerCCOM project,
FP7-PEOPLE-2012-CIG, grant agreement no. PCIG12-GA-2012-333796), the German
Ministry of Education and Research (CarboPerm-Project, BMBF grant
no. 03G0836G), the International Max Planck Research School for Global
Biogeochemical Cycles (IMPRS-gBGC), and the AXA Research Fund (PDOC_2012_W2
campaign, ARF fellowship M. Göckede). The authors wish to express their
appreciation to NESS staff members, especially Galina Zimova, Nastya Zimova,
and Vladimir Tatayev for organizing and assisting with field work;
Chiara Corradi and Lutz Merbold for giving us valuable advice; Martin Hertel,
Frank Voigt, Waldemar Ziegler, and other Freiland group members for technical
support; Ina Burjack for providing an aerial map and growing-season
partitioning scheme with vegetation phenology, as well as for assisting with
field and lab work; Marcus Wildner, Carsten Schaller, and Fanny Kittler for
assisting with field work; Mirco Migliavacca for advice on data analysis;
Ines Hilke and other RoMA group members for soil analysis; Silvana Schott for
assisting with plotting; and Julia McMillan for the language editing. We
ordered our authors according to both the first–last author emphasis and
equal contribution (i.e., alphabetical sequence) methods (Tscharntke et al.,
2007). <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> The article processing charges for
this open-access <?xmltex \hack{\newline}?> publication were covered by the Max Planck
Society. <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: P. Stoy<?xmltex \hack{\newline}?>
Reviewed by: three anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>Abbott, B. W., Jones, J. B., Schuur, E. A. G., Chapin III, F. S., Bowden, W.
B., Bret-Harte, M. S., Epstein, H. E., Flannigan, M. D., Harms, T. K.,
Hollingsworth, T. N., Mack, M. C., McGuire, A. D., Natali, S. M., Rocha, A.
V, Tank, S. E., Turetsky, M. R., Vonk, J. E., Wickland, K. P., Aiken, G. R.,
Alexander, H. D., Amon, R. M. W., Benscoter, B. W., Bergeron, Y., Bishop, K.,
Blarquez, O., Breen, A. L., Buffam, I., Cai, Y., Carcaillet, C., Carey, S.
K., Chen, J. M., Chen, H. Y. H., Christensen, T. R., Cooper, L. W.,
Cornelissen, J. H. C., de Groot, W. J., DeLuca, T. H., Dorrepaal, E.,
Fetcher, N., Finlay, J. C., Forbes, B. C., French, N. H. F., Gauthier, S.,
Girardin, M. P., Goetz, S. J., Goldammer, J. G., Gough, L., Grogan, P., Guo,
L., Higuera, P. E., Hinzman, L., Hu, F. S., Hugelius, G., Jafarov, E. E.,
Jandt, R., Johnstone, J. F., Kasischke, E. S., Kattner, G., Kelly, R.,
Keuper, F., Kling, G. W., Kortelainen, P., Kouki, J., Kuhry, P., Laudon, H.,
Laurion, I., Macdonald, R. W., Mann, P. J., Martikainen, P. J., McClelland,
J. W., Molau, U., Oberbauer, S. F., Olefeldt, D., Paré, D., Parisien,
M.-A., Payette, S., Peng, C., Pokrovsky, O. S., Rastetter, E. B., Raymond, P.
A., Raynolds, M. K., Rein, G., Reynolds, J. F., Robards, M., Rogers, B. M.,
Schädel, C., Schaefer, K., Schmidt, I. K., Shvidenko, A., Sky, J.,
Spencer, R. G. M., Starr, G., Striegl, R. G., Teisserenc, R., Tranvik, L. J.,
Virtanen, T., Welker, J. M., and Zimov, S.: Biomass offsets little or none of
permafrost carbon release from soils, streams, and wildfire: an expert
assessment, Environ. Res. Lett., 11, 034014,
<ext-link xlink:href="http://dx.doi.org/10.1088/1748-9326/11/3/034014" ext-link-type="DOI">10.1088/1748-9326/11/3/034014</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>
Abu-Hamdeh, N. H.: Thermal properties of soils as affected by density and
water content, Biosyst. Eng., 86, 97–102,
2003.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>
Allan, J. D.: Channels and flow, in: Stream Ecology: Structure and Function of
Running Waters,  1–22, Chapman and Hall, 1995.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>
Atanasiu, L.: Photosynthesis and respiration of three mosses at winter low
temperatures, Bryologist, 74, 23–27,  1971.</mixed-citation></ref>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>
Baptist, F. and Choler, P.: A simulation of the importance of length of
growing season and canopy functional properties on the seasonal gross primary
production of temperate alpine meadows, Ann. Bot., 101, 549–559,
2008.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>
Barr, A. G., Black, T. A., Hogg, E. H., Kljun, N., Morgenstern, K., and Nesic,
Z.: Inter-annual variability in the leaf area index of a boreal
aspen-hazelnut forest in relation to net ecosystem production, Agric. For.
Meteorol., 126, 237–255, 2004.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>Belshe, F., Schuur, E. A. G., and Bolker, B. M.: Tundra ecosystems observed to
be CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> sources due to differential amplification of the carbon cycle, Ecol.
Lett., 16, 1307–1315,  2013.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>
Billings, W. D., Luken, J. O., Mortensen, D. A. and Peterson, K. M.: Arctic
tundra a source or sink for atmospheric carbon dioxide in a changing
environmnet?, Oecologia, 53, 7–11, 1982.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>
Bintanja, R. and Selten, F. M.: Future increases in Arctic precipitation
linked to local evaporation and sea-ice retreat, Nature, 509,
479–482, 2014.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>
Blok, D., Heijmans, M. M. P. D., Schaepman-Strub, G., Kononov, A. V.,
Maximov, T. C., and Berendse, F.: Shrub expansion may reduce summer permafrost
thaw in Siberian tundra, Glob. Change Biol., 16, 1296–1305,
2010.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>
Bond-Lamberty, B. and Thomson, A.: Temperature-associated increases in the
global soil respiration record, Nature, 464, 579–582,
2010.</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>Bonfils, C. J. W., Phillips, T. J., Lawrence, D. M., Cameron-Smith, P.,
Riley, W. J., and Subin, Z. M.: On the influence of shrub height and expansion
on northern high latitude climate, Environ. Res. Lett., 7, 015503,
<ext-link xlink:href="http://dx.doi.org/10.1088/1748-9326/7/1/015503" ext-link-type="DOI">10.1088/1748-9326/7/1/015503</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>
Boone, R. D., Nadelhoffer, K. J., Canary, J. D., and Kaye, J. P.: Roots exert
a strong influence on the temperature sensitivity of soil respiration,
Nature, 396, 570–572,  1998.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>
Chapin, F. S., Matson, P. A., and Vitousek, P. M.: Plant carbon budgets, in
Principles of terrestrial ecosystem ecology,  Springer New
York, 157–182, 2012a.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>
Chapin, F. S., Matson, P. A., and Vitousek, P. M.: Temporal dynamics, in
Principles of terrestrial ecosystem ecology,   Springer New
York, 339–367, 2012b.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>Christensen, T. R., Friborg, T., Sommerkorn, M., Kaplan, J., Illeris, L.,
Soegaard, H., Nordstroem, C., and Jonasson, S.: Trace gas exchange in a
high-Arctic valley: 1. Variationsin CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> flux between tundra
vegetation types, Global Biogeochem. Cy., 14, 701–713,
2000.</mixed-citation></ref>
      <ref id="bib1.bib17"><label>17</label><mixed-citation>
Collins, M., Knutti, R., Arblaster, J., Dufresne, J.-L., Fichefet, T.,
Friedlingstein, P., Gao, X., Gutowski, W. J., Johns, T., Krinner, G.,
Shongwe, M., Tebaldi, C., Weaver, A. J., and Wehne, M.: Long-term Climate
Change: Projections, Commitments and Irreversibility, in Climate Change 2013:
The Physical Science Basis. Contribution of Working Group I to the Fifth
Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge
University Press, Cambridge and New York, 2013.</mixed-citation></ref>
      <ref id="bib1.bib18"><label>18</label><mixed-citation>
Corradi, C., Kolle, O., Walter, K., Zimov, S. A., and Schulze, E. D.: Carbon
dioxide and methane exchange of a north-east Siberian tussock tundra, Glob.
Change Biol., 11, 1910–1925,  2005.</mixed-citation></ref>
      <ref id="bib1.bib19"><label>19</label><mixed-citation>
Coyne, P. I. and Kelley, J. J.: Release of carbon dioxide from frozen soil to
the Arctic atmosphere, Nature, 234, 407–408,  1971.</mixed-citation></ref>
      <ref id="bib1.bib20"><label>20</label><mixed-citation>
Curtis, J., Wendler, G., Stone, R., and Dutton, E.: Precipitation decrease in
the western Arctic, with special emphasis on Barrow and Barter Island,
Alaska, Int. J. Climatol., 18, 1687–1707, 1998.</mixed-citation></ref>
      <ref id="bib1.bib21"><label>21</label><mixed-citation>Epstein, H. E., Raynolds, M. K., Walker, D. A., Bhatt, U. S., Tucker, C. J.,
and Pinzon, J. E.: Dynamics of aboveground phytomass of the circumpolar
Arctic tundra during the past three decades, Environ. Res. Lett.,
7, 015506, <ext-link xlink:href="http://dx.doi.org/10.1088/1748-9326/7/1/015506" ext-link-type="DOI">10.1088/1748-9326/7/1/015506</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib22"><label>22</label><mixed-citation>
Friborg, T., Christensen, T. R., and Søgaard, H.: Rapid response of
greenhouse gas emission to early spring thaw in a subarctic mire as shown by
micrometeorological techniques, Geophys. Res. Lett., 24, 3061–3064,
1997.</mixed-citation></ref>
      <ref id="bib1.bib23"><label>23</label><mixed-citation>
Green, J. C.: Modelling flow resistance in vegetated streams: review and
development of new theory, Hydrol. Process., 19, 1245–1259,
2005.</mixed-citation></ref>
      <ref id="bib1.bib24"><label>24</label><mixed-citation>
Hobbie, S. E.: Temperature and plant species control over litter
decomposition in Alaskan tundra, Ecol. Monogr., 66, 503–522,
2008.</mixed-citation></ref>
      <ref id="bib1.bib25"><label>25</label><mixed-citation>
Högberg, P., Nordgren, A., Buchmann, N., Taylor, A. F., Ekblad, A.,
Högberg, M. N., Nyberg, G., Ottosson-Löfvenius, M., and Read, D. J.:
Large-scale forest girdling shows that current photosynthesis drives soil
respiration, Nature, 411, 789–792,  2001.</mixed-citation></ref>
      <ref id="bib1.bib26"><label>26</label><mixed-citation>Huemmrich, K. F., Kinoshita, G., Gamon, J. A., Houston, S., Kwon, H., and
Oechel, W. C.: Tundra carbon balance under varying temperature and moisture
regimes, J. Geophys. Res., 115, G00I02, <ext-link xlink:href="http://dx.doi.org/10.1029/2009JG001237" ext-link-type="DOI">10.1029/2009JG001237</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib27"><label>27</label><mixed-citation>Hugelius, G., Strauss, J., Zubrzycki, S., Harden, J. W., Schuur, E. A. G.,
Ping, C.-L., Schirrmeister, L., Grosse, G., Michaelson, G. J., Koven, C. D.,
O'Donnell, J. A., Elberling, B., Mishra, U., Camill, P., Yu, Z., Palmtag, J.,
and Kuhry, P.: Estimated stocks of circumpolar permafrost carbon with
quantified uncertainty ranges and identified data gaps, Biogeosciences,
11, 6573–6593, <ext-link xlink:href="http://dx.doi.org/10.5194/bg-11-6573-2014" ext-link-type="DOI">10.5194/bg-11-6573-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib28"><label>28</label><mixed-citation>
Huntington, T. G.: Evidence for intensification of the global water cycle:
Review and synthesis, J. Hydrol., 319, 83–95,
2006.</mixed-citation></ref>
      <ref id="bib1.bib29"><label>29</label><mixed-citation>
Idso, S. B., Schmugge, T. J., Jackson, R. D., and Reginato, R. J.: The utility
of surface temperature measurements for the remote sensing of surface soil
water status, J. Geophys. Res., 80, 3044–3049,
1975.</mixed-citation></ref>
      <ref id="bib1.bib30"><label>30</label><mixed-citation>Jia, G. J.: Greening of arctic Alaska, 1981–2001, Geophys. Res. Lett.,
30, 2067, <ext-link xlink:href="http://dx.doi.org/10.1029/2003GL018268" ext-link-type="DOI">10.1029/2003GL018268</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bib31"><label>31</label><mixed-citation>
Johnson, L. C., Shaver, G. R., Giblin, A. E., Nadelhoffer, K. J., Rastetter,
E. R., Laundre, J. A., and Murray, G. L.: Effects of drainage and temperature
on carbon balance of tussock tundra microcosms, Oecologia, 108,
737–748, 1996.</mixed-citation></ref>
      <ref id="bib1.bib32"><label>32</label><mixed-citation>Johnston, C. E., Ewing, S. A., Harden, J. W., Varner, R. K., Wickland, K. P.,
Koch, J. C., Fuller, C. C., Manies, K., and Jorgenson, M. T.: Effect of
permafrost thaw on CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> exchange in a western Alaska peatland
chronosequence, Environ. Res. Lett., 9, 085004,
<ext-link xlink:href="http://dx.doi.org/10.1088/1748-9326/9/8/085004" ext-link-type="DOI">10.1088/1748-9326/9/8/085004</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib33"><label>33</label><mixed-citation>Jorgenson, M. T., Shur, Y. L., and Pullman, E. R.: Abrupt increase in
permafrost degradation in Arctic Alaska, Geophys. Res. Lett., 33,
L02503, <ext-link xlink:href="http://dx.doi.org/10.1029/2005GL024960" ext-link-type="DOI">10.1029/2005GL024960</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bib34"><label>34</label><mixed-citation>
Kattsov, V. M. and Walsh, J. E.: Twentieth-century trends of Arctic
precipitation from observational data and a climate model simulation, J.
Clim., 13, 1362–1370,  2000.</mixed-citation></ref>
      <ref id="bib1.bib35"><label>35</label><mixed-citation>
Kelley, J. J., Weaver, D. F., and Smith, B. P.: The variation of carbon
dioxide under the snow in the Arctic, Ecology, 49, 358–361,
1968.</mixed-citation></ref>
      <ref id="bib1.bib36"><label>36</label><mixed-citation>Kim, Y.: Effect of thaw depth on fluxes of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in manipulated Arctic
coastal tundra of Barrow, Alaska, Sci. Total Environ., 505, 385–389,
2015.</mixed-citation></ref>
      <ref id="bib1.bib37"><label>37</label><mixed-citation>
Kirtman, B., Power, S. B., Adedoyin, J. A., Boer, G. J., Bojariu, R.,
Camilloni, I., Doblas-Reyes, F. J., Fiore, A. M., Kimoto, M., Meehl, G. A.,
Prather, M., Sarr, A., Schär, C., Sutton, R., Oldenborgh, G. J. van,
Vecchi, G., and Wan, H. J.: Near-term Climate Change: Projections and
Predictability, in Climate Change 2013: The Physical Science Basis,
Contribution of Working Group I to the Fifth Assessment Report of the
Intergovernmental Panel on Climate Change, Cambridge University Press,
Cambridge and New York, 2013.</mixed-citation></ref>
      <ref id="bib1.bib38"><label>38</label><mixed-citation>
Koven, C. D., Ringeval, B., Friedlingstein, P., Ciais, P., Cadule, P.,
Khvorostyanov, D., Krinner, G., and Tarnocai, C.: Permafrost carbon-climate
feedbacks accelerate global warming, P. Natl. Acad. Sci. USA,
108, 14769–14774,  2011.</mixed-citation></ref>
      <ref id="bib1.bib39"><label>39</label><mixed-citation>
Lakshmi, V., Jackson, T. J., and Zehrfuhs, D.: Soil moisture-temperature
relationships: results from two field experiments, Hydrol. Process., 17,
3041–3057,  2003.</mixed-citation></ref>
      <ref id="bib1.bib40"><label>40</label><mixed-citation>
Lawrence, W. T. and Oechel, W. C.: Effects of soil temperature on the carbon
exchange of taiga seedlings, II. Photosynthesis, respiration, and
conductance, Can. J. For. Res., 13, 850–859,  1983.</mixed-citation></ref>
      <ref id="bib1.bib41"><label>41</label><mixed-citation>
Lee, H., Schuur, E. A. G., Inglett, K. S., Lavoie, M., and Chanton, J. P.: The
rate of permafrost carbon release under aerobic and anaerobic conditions and
its potential effects on climate, Glob. Change Biol., 18,
515–527,  2012.</mixed-citation></ref>
      <ref id="bib1.bib42"><label>42</label><mixed-citation>
Liljedahl, A. K., Boike, J., Daanen, R. P., Fedorov, A. N., Frost, G. V.,
Grosse, G., Hinzman, L. D., Iijma, Y., Jorgenson, J. C., Matveyeva, N.,
Necsoiu, M., Raynolds, M. K., Romanovsky, V. E., Schulla, J., Tape, K. D.,
Walker, D. A., Wilson, C. J., Yabuki, H., and Zona, D.: Pan-Arctic ice-wedge
degradation in warming permafrost and its influence on tundra hydrology, Nat.
Geosci., 9, 312–318,  2016.</mixed-citation></ref>
      <ref id="bib1.bib43"><label>43</label><mixed-citation>Luus, K. A. and Lin, J. C.: The Polar Vegetation Photosynthesis and
Respiration Model: a parsimonious, satellite-data-driven model of
high-latitude CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> exchange, Geosci. Model Dev., 8, 2655–2674,
<ext-link xlink:href="http://dx.doi.org/10.5194/gmd-8-2655-2015" ext-link-type="DOI">10.5194/gmd-8-2655-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib44"><label>44</label><mixed-citation>Mahadevan, P., Wofsy, S. C., Matross, D. M., Xiao, X., Dunn, A. L., Lin, J.
C., Gerbig, C., Munger, J. W., Chow, V. Y., and Gottlieb, E. W.: A
satellite-based biosphere parameterization for net ecosystem CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> exchange:
Vegetation Photosynthesis and Respiration Model (VPRM), Global Biogeochem.
Cy., 22, GB2005, <ext-link xlink:href="http://dx.doi.org/10.1029/2006GB002735" ext-link-type="DOI">10.1029/2006GB002735</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bib45"><label>45</label><mixed-citation>
Mastepanov, M., Sigsgaard, C., Dlugokenchy, E. J., Houweling, S., Ström,
L., Tamstorf, M. P., and Christensen, T. R.: Large tundra methane burst
during onset of freezing, Nature, 456, 628–630, 2008.</mixed-citation></ref>
      <ref id="bib1.bib46"><label>46</label><mixed-citation>Mastepanov, M., Sigsgaard, C., Tagesson, T., Ström, L., Tamstorf, M. P.,
Lund, M., and Christensen, T. R.: Revisiting factors controlling methane
emissions from high-Arctic tundra, Biogeosciences, 10, 5139–5158,
<ext-link xlink:href="http://dx.doi.org/10.5194/bg-10-5139-2013" ext-link-type="DOI">10.5194/bg-10-5139-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib47"><label>47</label><mixed-citation>McEwing, K. R., Fisher, J. P., and Zona, D.: Environmental and vegetation
controls on the spatial variability of CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> emission from wet-sedge and
tussock tundra ecosystems in the Arctic, Plant Soil, 388, 37–52,
2015.</mixed-citation></ref>
      <ref id="bib1.bib48"><label>48</label><mixed-citation>Merbold, L., Kutsch, W. L., Corradi, C., Kolle, O., Rebmann, C., Stoy, P. C.,
Zimov, S. A., and Schulze, E. D.: Artificial drainage and associated carbon
fluxes (CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) in a tundra ecosystem, Glob. Change Biol., 15,
2599–2614, 2009.</mixed-citation></ref>
      <ref id="bib1.bib49"><label>49</label><mixed-citation>
Myneni, R. B., Keeling, C. D., Tucker, C. J., Asrar, G., and Nemani, R. R.:
Increased plant growth in the northern high latitudes from 1981 to 1991,
Nature, 386, 698–702, 1997.</mixed-citation></ref>
      <ref id="bib1.bib50"><label>50</label><mixed-citation>Natali, S. M., Schuur, E. A. G., Mauritz, M., Schade, J., Celis, G., Crummer,
G., Johnston, C., Krapek, J., Pegoraro, E., Salmon, V., and Webb, E.:
Permafrost thaw and soil moisture drive CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> release from upland
tundra, J. Geophys. Res.-Biogeo., 120, 525–537,
2015.</mixed-citation></ref>
      <ref id="bib1.bib51"><label>51</label><mixed-citation>
Niinemets, Ü.: Responses of forest trees to single and multiple
environmental stresses from seedlings to mature plants: Past stress history,
stress interactions, tolerance and acclimation, For. Ecol. Manage., 260,
1623–1639,  2010.</mixed-citation></ref>
      <ref id="bib1.bib52"><label>52</label><mixed-citation>
O'Donnell, J. A., Jorgenson, M. T., Harden, J. W., McGuire, A. D., Kanevskiy,
M. Z., and Wickland, K. P.: The effects of permafrost thaw on soil hydrologic,
thermal, and carbon dynamics in an Alaskan peatland, Ecosystems,
15, 213–229, 2011.</mixed-citation></ref>
      <ref id="bib1.bib53"><label>53</label><mixed-citation>Oechel, W. C., Vourlitis, G. L., Hastings, S. J., Ault, R. P., and Bryant, P.:
The effects of water table manipulation and elevated temperature on the net
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux of wet sedge tundra ecosystems, Glob. Change Biol., 4,
77–90,  1998.</mixed-citation></ref>
      <ref id="bib1.bib54"><label>54</label><mixed-citation>Oechel, W. C., Vourlitis, G. L., Hastings, S. J., Zulueta, R. C., Hinzman,
L.,
and Kane, D.: Acclimation of ecosystem CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> exchange in the Alaskan Arctic in
response to decadal climate warming, Nature, 406, 978–981, 2000.</mixed-citation></ref>
      <ref id="bib1.bib55"><label>55</label><mixed-citation>Olivas, P. C., Oberbauer, S. F., Tweedie, C. E., Oechel, W. C., and Kuchy, A.:
Responses of CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux components of Alaskan Coastal Plain tundra to shifts in
water table, J. Geophys. Res., 115, G00I05, <ext-link xlink:href="http://dx.doi.org/10.1029/2009jg001254" ext-link-type="DOI">10.1029/2009jg001254</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib56"><label>56</label><mixed-citation>
Overland, J. E., Wang, M., Walsh, J. E., and Stroeve, J. C.: Future Arctic
climate changes: Adaptation and mitigation time scales, Earth's Futur.,
2, 68–74,  2014.</mixed-citation></ref>
      <ref id="bib1.bib57"><label>57</label><mixed-citation>Panikov, N. S. and Dedysh, S. N.: Cold season CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> and CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission from
boreal peat bogs (West Siberia): Winter fluxes and thaw activation dynamics,
Global Biogeochem. Cy., 14, 1071–1080,
2000.</mixed-citation></ref>
      <ref id="bib1.bib58"><label>58</label><mixed-citation>
Parkin, T. B. and Venterea, R. T.: Chamber-based trace gas flux measurements,
in: Sampling protocols, edited by: Follett, R. F.,  3.1–3.39., 2010.</mixed-citation></ref>
      <ref id="bib1.bib59"><label>59</label><mixed-citation>Peterson, K. M., Billings, W. D., and Reynolds, D. N.: Influence of
water-table and atmospheric CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration on the carbon balance of Arctic
tundra, Arct. Alp. Res., 16, 331–335,  1984.</mixed-citation></ref>
      <ref id="bib1.bib60"><label>60</label><mixed-citation>R Core Team: R: A language and environment for statistical computing,
available from: <uri>http://www.r-project.org</uri> (last access: 20 June 2016), 2013.</mixed-citation></ref>
      <ref id="bib1.bib61"><label>61</label><mixed-citation>
Reginato, R. J., Idso, S. B., Vedder, J. F., Jackson, R. D., Blanchard, M.
B.,
and Goettelman, R.: Soil water content and evaporation determined by thermal
parameters obtained from ground-based and remote measurements, J. Geophys.
Res., 81, 1617–1620, 1976.</mixed-citation></ref>
      <ref id="bib1.bib62"><label>62</label><mixed-citation>
Richards, J. A. and Xiuping, J.: Supervised classification techniques, in
Remote sensing digital image analysis: an introduction,
Springer-Verlag Berlin Heidelberg, 181–222, 1999.</mixed-citation></ref>
      <ref id="bib1.bib63"><label>63</label><mixed-citation>
Rochette, P. and Hutchinson, G. L.: Measurement of soil respiration in situ:
chamber techniques, in Micrometeorology in Agricultural Systems,
American Society of Agronomy, Madison, USA, 247–286, 2005.</mixed-citation></ref>
      <ref id="bib1.bib64"><label>64</label><mixed-citation>
Saugier, B., Roy, J., and Mooney, H. A.: Estimations of global terrestrial
productivity: converging toward a single number?, in: Terrestrial Global
Productivity,   Elsevier, 543–557, 2001.</mixed-citation></ref>
      <ref id="bib1.bib65"><label>65</label><mixed-citation>
Schädel, C., Schuur, E. A. G., Bracho, R., Elberling, B., Knoblauch, C.,
Lee, H., Luo, Y., Shaver, G. R., and Turetsky, M. R.: Circumpolar assessment
of permafrost C quality and its vulnerability over time using long-term
incubation data, Glob. Change Biol., 20, 641–652,
2014.</mixed-citation></ref>
      <ref id="bib1.bib66"><label>66</label><mixed-citation>
Schaefer, K., Zhang, T., Bruhwiler, L., and Barrett, A. P.: Amount and timing
of permafrost carbon release in response to climate warming, Tellus B,
63, 165–180,  2011.</mixed-citation></ref>
      <ref id="bib1.bib67"><label>67</label><mixed-citation>
Schuur, E. A. G., Bockheim, J., Canadell, J. G., Euskirchen, E., Field, C.
B., Goryachkin, S. V., Hagemann, S., Kuhry, P., Lafleur, P. M., Lee, H.,
Mazhitova, G., Nelson, F. E., Rinke, A., Romanovsky, V. E., Shiklomanov, N.,
Tarnocai, C., Venevsky, S., Vogel, J. G., and Zimov, S. A.: Vulnerability of
permafrost carbon to climate change: Implications for the global carbon
cycle, Bioscience, 58, 701–714, 2008.</mixed-citation></ref>
      <ref id="bib1.bib68"><label>68</label><mixed-citation>
Schuur, E. A. G., Vogel, J. G., Crummer, K. G., Lee, H., Sickman, J. O., and
Osterkamp, T. E.: The effect of permafrost thaw on old carbon release and net
carbon exchange from tundra, Nature, 459, 556–559,
2009.</mixed-citation></ref>
      <ref id="bib1.bib69"><label>69</label><mixed-citation>
Schuur, E. A. G., McGuire, A. D., Schädel, C., Grosse, G., Harden, J. W.,
Hayes, D. J., Hugelius, G., Koven, C. D., Kuhry, P., Lawrence, D. M., Natali,
S. M., Olefeldt, D., Romanovsky, V. E., Schaefer, K., Turetsky, M. R., Treat,
C. C., and Vonk, J. E.: Climate change and the permafrost carbon feedback,
Nature, 520, 171–179, 2015.</mixed-citation></ref>
      <ref id="bib1.bib70"><label>70</label><mixed-citation>
Schwarz, P. A., Fahey, T. J., and Dawson, T. E.: Seasonal air and soil
temperature effects on photosynthesis in red spruce (Picea rubens) saplings,
Tree Physiol., 17, 187–194,  1997.</mixed-citation></ref>
      <ref id="bib1.bib71"><label>71</label><mixed-citation>
Serreze, M. C., Walsh, J. E., III, F. S. C., Osterkamp, T., Dyurgerov, M.,
Romanovsky, V., Oechel, W. C., Morison, J., Zhang, T., and Barry, R. G.:
Observational evidence of recent change in the northern high-latitude
environment, Climate Change, 46, 159–207,
2000.</mixed-citation></ref>
      <ref id="bib1.bib72"><label>72</label><mixed-citation>
Shaver, G. R. and Jonasson, S.: Productivity of Arctic ecosystems, in:
Terrestrial Global Productivity,  Elsevier,  189–210, 2001.</mixed-citation></ref>
      <ref id="bib1.bib73"><label>73</label><mixed-citation>
Stafford, J. M., Wendler, G., and Curtis, J.: Temperature and precipitation of
Alaska: 50 year trend analysis, Theor. Appl. Climatol., 67, 33–44,
2000.</mixed-citation></ref>
      <ref id="bib1.bib74"><label>74</label><mixed-citation>Tarnocai, C., Canadell, J. G., Schuur, E. A. G., Kuhry, P., Mazhitova, G.,
Zimov, S., Tamocai, C., Canadell, J. G., Schuur, E. A. G., Kuhry, P.,
Mazhitova, G., Zimov, S., Tarnocai, C., Canadell, J. G., Schuur, E. A. G.,
Kuhry, P., Mazhitova, G., and Zimov, S.: Soil organic carbon pools in the
northern circumpolar permafrost region, Global Biogeochem. Cy., 23, GB2023,
<ext-link xlink:href="http://dx.doi.org/10.1029/2008GB003327" ext-link-type="DOI">10.1029/2008GB003327</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bib75"><label>75</label><mixed-citation>Tscharntke, T., Hochberg, M. E., Rand, T. A., Resh, V. H., and Krauss, J.:
Author sequence and credit for contributions in multiauthored publications,
PLoS Biol., 5, e18, <ext-link xlink:href="http://dx.doi.org/10.1371/journal.pbio.0050018" ext-link-type="DOI">10.1371/journal.pbio.0050018</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bib76"><label>76</label><mixed-citation>Webb, E. E., Schuur, E. A. G., Natali, S. M., Oken, K. L., Bracho, R.,
Krapek, J. P., Risk, D., and Nickerson, N. R.: Increased wintertime CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> loss
as a result of sustained tundra warming, J. Geophys. Res., 121,
249–265, 2016.</mixed-citation></ref>
      <ref id="bib1.bib77"><label>77</label><mixed-citation>
White, M. A., Running, S. W., and Thornton, P. E.: The impact of
growing-season length variability on carbon assimilation and
evapotranspiration over 88 years in the eastern US deciduous forest, Int. J.
Biometeorol., 42, 139–145, 1999.</mixed-citation></ref>
      <ref id="bib1.bib78"><label>78</label><mixed-citation>
Xia, J., Niu, S., Ciais, P., Janssens, I. A., Chen, J., Ammann, C., Arain,
A., Blanken, P. D., Cescatti, A., Bonal, D., Buchmann, N., Curtis, P. S.,
Chen, S., Dong, J., Flanagan, L. B., Frankenberg, C., Georgiadis, T., Gough,
C. M., Hui, D., Kiely, G., Li, J., Lund, M., Magliulo, V., Marcolla, B.,
Merbold, L., Montagnani, L., Moors, E. J., Olesen, J. E., Piao, S., Raschi,
A., Roupsard, O., Suyker, A. E., Urbaniak, M., Vaccari, F. P., Varlagin, A.,
Vesala, T., Wilkinson, M., Weng, E., Wohlfahrt, G., Yan, L., and Luo, Y.:
Joint control of terrestrial gross primary productivity by plant phenology
and physiology, P. Natl. Acad. Sci. USA, 112, 2788–2793,
2015.</mixed-citation></ref>
      <ref id="bib1.bib79"><label>79</label><mixed-citation>
Xu, L., Myneni, R. B., Chapin III, F. S., Callaghan, T. V., Pinzon, J. E.,
Tucker, C. J., Zhu, Z., Bi, J., Ciais, P., Tømmervik, H., Euskirchen, E.
S., Forbes, B. C., Piao, S. L., Anderson, B. T., Ganguly, S., Nemani, R. R.,
Goetz, S. J., Beck, P. S. A., Bunn, A. G., Cao, C., and Stroeve, J. C.:
Temperature and vegetation seasonality diminishment over northern lands,
Nature Climatic Change, 3, 581–586,  2013.</mixed-citation></ref>
      <ref id="bib1.bib80"><label>80</label><mixed-citation>Zhou, T., Shi, P., Hui, D., and Luo, Y.: Global pattern of temperature
sensitivity of soil heterotrophic respiration (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mn>10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and its implications for
carbon-climate feedback, J. Geophys. Res., 114, G02016,
<ext-link xlink:href="http://dx.doi.org/10.1029/2008JG000850" ext-link-type="DOI">10.1029/2008JG000850</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bib81"><label>81</label><mixed-citation>Zimov, S. A., Semiletov, I. P., Daviodov, S. P., Voropaev, Y. V.,
Prosyannikov, S. F., Wong, C. S., and Chan, Y.-H.: Wintertime CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission
from soils of northeastern Siberia, Arctic, 46, 197–204,
1993.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib82"><label>82</label><mixed-citation>Zimov, S. A., Davidov, S. P., Voropaev, Y. V., Prosiannikov, S. F.,
Semiletov, I. P., Chapin, M. C., and Chapin, F. S.: Siberian CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> efflux in
winter as a CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> source and cause of seasonality in atmospheric CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>,
Climate
Change, 33, 111–120,  1996.</mixed-citation></ref>
      <ref id="bib1.bib83"><label>83</label><mixed-citation>Zona, D., Lipson, D. A., Zulueta, R. C., Oberbauer, S. F., and Oechel, W. C.:
Microtopographic controls on ecosystem functioning in the Arctic Coastal
Plain, J. Geophys. Res., 116, G00I08, <ext-link xlink:href="http://dx.doi.org/10.1029/2009JG001241" ext-link-type="DOI">10.1029/2009JG001241</ext-link>, 2011.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Long-term drainage reduces CO<sub>2</sub> uptake and increases CO<sub>2</sub> emission
on a Siberian floodplain due to shifts in vegetation community and soil
thermal characteristics</article-title-html>
<abstract-html><p class="p">With increasing air temperatures and changing precipitation patterns forecast
for the Arctic over the coming decades, the thawing of ice-rich permafrost is
expected to increasingly alter hydrological conditions by creating mosaics of
wetter and drier areas. The objective of this study is to investigate how 10
years of lowered water table depths of wet floodplain ecosystems would affect
CO<sub>2</sub> fluxes measured using a closed chamber system, focusing on the role
of long-term changes in soil thermal characteristics and vegetation community
structure. Drainage diminishes the heat capacity and thermal conductivity of
organic soil, leading to warmer soil temperatures in shallow layers during
the daytime and colder soil temperatures in deeper layers, resulting in a
reduction in thaw depths. These soil temperature changes can intensify
growing-season heterotrophic respiration by up to 95 %. With decreased
autotrophic respiration due to reduced gross primary production under these
dry conditions, the differences in ecosystem respiration rates in the present
study were 25 %. We also found that a decade-long drainage installation
significantly increased shrub abundance, while decreasing <i>Eriophorum
angustifolium </i> abundance resulted in <i>Carex </i> sp. dominance. These
two changes had opposing influences on gross primary production during the
growing season: while the increased abundance of shrubs slightly increased
gross primary production, the replacement of <i>E. angustifolium</i> by
<i>Carex </i> sp.  significantly decreased it. With the effects of
ecosystem respiration and gross primary production combined, net CO<sub>2</sub>
uptake rates varied between the two years, which can be attributed to
<i>Carex</i>-dominated plots' sensitivity to climate. However, underlying
processes showed consistent patterns: 10 years of drainage increased soil
temperatures in shallow layers and replaced <i>E. angustifolium</i> by
<i>Carex</i> sp., which increased CO<sub>2</sub> emission and reduced CO<sub>2</sub>
uptake rates. During the non-growing season, drainage resulted in 4 times
more CO<sub>2</sub> emissions, with high sporadic fluxes; these fluxes were induced
by soil temperatures, <i>E. angustifolium</i> abundance, and air pressure.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Abbott, B. W., Jones, J. B., Schuur, E. A. G., Chapin III, F. S., Bowden, W.
B., Bret-Harte, M. S., Epstein, H. E., Flannigan, M. D., Harms, T. K.,
Hollingsworth, T. N., Mack, M. C., McGuire, A. D., Natali, S. M., Rocha, A.
V, Tank, S. E., Turetsky, M. R., Vonk, J. E., Wickland, K. P., Aiken, G. R.,
Alexander, H. D., Amon, R. M. W., Benscoter, B. W., Bergeron, Y., Bishop, K.,
Blarquez, O., Breen, A. L., Buffam, I., Cai, Y., Carcaillet, C., Carey, S.
K., Chen, J. M., Chen, H. Y. H., Christensen, T. R., Cooper, L. W.,
Cornelissen, J. H. C., de Groot, W. J., DeLuca, T. H., Dorrepaal, E.,
Fetcher, N., Finlay, J. C., Forbes, B. C., French, N. H. F., Gauthier, S.,
Girardin, M. P., Goetz, S. J., Goldammer, J. G., Gough, L., Grogan, P., Guo,
L., Higuera, P. E., Hinzman, L., Hu, F. S., Hugelius, G., Jafarov, E. E.,
Jandt, R., Johnstone, J. F., Kasischke, E. S., Kattner, G., Kelly, R.,
Keuper, F., Kling, G. W., Kortelainen, P., Kouki, J., Kuhry, P., Laudon, H.,
Laurion, I., Macdonald, R. W., Mann, P. J., Martikainen, P. J., McClelland,
J. W., Molau, U., Oberbauer, S. F., Olefeldt, D., Paré, D., Parisien,
M.-A., Payette, S., Peng, C., Pokrovsky, O. S., Rastetter, E. B., Raymond, P.
A., Raynolds, M. K., Rein, G., Reynolds, J. F., Robards, M., Rogers, B. M.,
Schädel, C., Schaefer, K., Schmidt, I. K., Shvidenko, A., Sky, J.,
Spencer, R. G. M., Starr, G., Striegl, R. G., Teisserenc, R., Tranvik, L. J.,
Virtanen, T., Welker, J. M., and Zimov, S.: Biomass offsets little or none of
permafrost carbon release from soils, streams, and wildfire: an expert
assessment, Environ. Res. Lett., 11, 034014,
<a href="http://dx.doi.org/10.1088/1748-9326/11/3/034014" target="_blank">doi:10.1088/1748-9326/11/3/034014</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Abu-Hamdeh, N. H.: Thermal properties of soils as affected by density and
water content, Biosyst. Eng., 86, 97–102,
2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Allan, J. D.: Channels and flow, in: Stream Ecology: Structure and Function of
Running Waters,  1–22, Chapman and Hall, 1995.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Atanasiu, L.: Photosynthesis and respiration of three mosses at winter low
temperatures, Bryologist, 74, 23–27,  1971.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Baptist, F. and Choler, P.: A simulation of the importance of length of
growing season and canopy functional properties on the seasonal gross primary
production of temperate alpine meadows, Ann. Bot., 101, 549–559,
2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
Barr, A. G., Black, T. A., Hogg, E. H., Kljun, N., Morgenstern, K., and Nesic,
Z.: Inter-annual variability in the leaf area index of a boreal
aspen-hazelnut forest in relation to net ecosystem production, Agric. For.
Meteorol., 126, 237–255, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
Belshe, F., Schuur, E. A. G., and Bolker, B. M.: Tundra ecosystems observed to
be CO<sub>2</sub> sources due to differential amplification of the carbon cycle, Ecol.
Lett., 16, 1307–1315,  2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
Billings, W. D., Luken, J. O., Mortensen, D. A. and Peterson, K. M.: Arctic
tundra a source or sink for atmospheric carbon dioxide in a changing
environmnet?, Oecologia, 53, 7–11, 1982.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Bintanja, R. and Selten, F. M.: Future increases in Arctic precipitation
linked to local evaporation and sea-ice retreat, Nature, 509,
479–482, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Blok, D., Heijmans, M. M. P. D., Schaepman-Strub, G., Kononov, A. V.,
Maximov, T. C., and Berendse, F.: Shrub expansion may reduce summer permafrost
thaw in Siberian tundra, Glob. Change Biol., 16, 1296–1305,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Bond-Lamberty, B. and Thomson, A.: Temperature-associated increases in the
global soil respiration record, Nature, 464, 579–582,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Bonfils, C. J. W., Phillips, T. J., Lawrence, D. M., Cameron-Smith, P.,
Riley, W. J., and Subin, Z. M.: On the influence of shrub height and expansion
on northern high latitude climate, Environ. Res. Lett., 7, 015503,
<a href="http://dx.doi.org/10.1088/1748-9326/7/1/015503" target="_blank">doi:10.1088/1748-9326/7/1/015503</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Boone, R. D., Nadelhoffer, K. J., Canary, J. D., and Kaye, J. P.: Roots exert
a strong influence on the temperature sensitivity of soil respiration,
Nature, 396, 570–572,  1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Chapin, F. S., Matson, P. A., and Vitousek, P. M.: Plant carbon budgets, in
Principles of terrestrial ecosystem ecology,  Springer New
York, 157–182, 2012a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
Chapin, F. S., Matson, P. A., and Vitousek, P. M.: Temporal dynamics, in
Principles of terrestrial ecosystem ecology,   Springer New
York, 339–367, 2012b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Christensen, T. R., Friborg, T., Sommerkorn, M., Kaplan, J., Illeris, L.,
Soegaard, H., Nordstroem, C., and Jonasson, S.: Trace gas exchange in a
high-Arctic valley: 1. Variationsin CO<sub>2</sub> and CH<sub>4</sub> flux between tundra
vegetation types, Global Biogeochem. Cy., 14, 701–713,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>17</label><mixed-citation>
Collins, M., Knutti, R., Arblaster, J., Dufresne, J.-L., Fichefet, T.,
Friedlingstein, P., Gao, X., Gutowski, W. J., Johns, T., Krinner, G.,
Shongwe, M., Tebaldi, C., Weaver, A. J., and Wehne, M.: Long-term Climate
Change: Projections, Commitments and Irreversibility, in Climate Change 2013:
The Physical Science Basis. Contribution of Working Group I to the Fifth
Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge
University Press, Cambridge and New York, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>18</label><mixed-citation>
Corradi, C., Kolle, O., Walter, K., Zimov, S. A., and Schulze, E. D.: Carbon
dioxide and methane exchange of a north-east Siberian tussock tundra, Glob.
Change Biol., 11, 1910–1925,  2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>19</label><mixed-citation>
Coyne, P. I. and Kelley, J. J.: Release of carbon dioxide from frozen soil to
the Arctic atmosphere, Nature, 234, 407–408,  1971.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>20</label><mixed-citation>
Curtis, J., Wendler, G., Stone, R., and Dutton, E.: Precipitation decrease in
the western Arctic, with special emphasis on Barrow and Barter Island,
Alaska, Int. J. Climatol., 18, 1687–1707, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>21</label><mixed-citation>
Epstein, H. E., Raynolds, M. K., Walker, D. A., Bhatt, U. S., Tucker, C. J.,
and Pinzon, J. E.: Dynamics of aboveground phytomass of the circumpolar
Arctic tundra during the past three decades, Environ. Res. Lett.,
7, 015506, <a href="http://dx.doi.org/10.1088/1748-9326/7/1/015506" target="_blank">doi:10.1088/1748-9326/7/1/015506</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>22</label><mixed-citation>
Friborg, T., Christensen, T. R., and Søgaard, H.: Rapid response of
greenhouse gas emission to early spring thaw in a subarctic mire as shown by
micrometeorological techniques, Geophys. Res. Lett., 24, 3061–3064,
1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>23</label><mixed-citation>
Green, J. C.: Modelling flow resistance in vegetated streams: review and
development of new theory, Hydrol. Process., 19, 1245–1259,
2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>24</label><mixed-citation>
Hobbie, S. E.: Temperature and plant species control over litter
decomposition in Alaskan tundra, Ecol. Monogr., 66, 503–522,
2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>25</label><mixed-citation>
Högberg, P., Nordgren, A., Buchmann, N., Taylor, A. F., Ekblad, A.,
Högberg, M. N., Nyberg, G., Ottosson-Löfvenius, M., and Read, D. J.:
Large-scale forest girdling shows that current photosynthesis drives soil
respiration, Nature, 411, 789–792,  2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>26</label><mixed-citation>
Huemmrich, K. F., Kinoshita, G., Gamon, J. A., Houston, S., Kwon, H., and
Oechel, W. C.: Tundra carbon balance under varying temperature and moisture
regimes, J. Geophys. Res., 115, G00I02, <a href="http://dx.doi.org/10.1029/2009JG001237" target="_blank">doi:10.1029/2009JG001237</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>27</label><mixed-citation>
Hugelius, G., Strauss, J., Zubrzycki, S., Harden, J. W., Schuur, E. A. G.,
Ping, C.-L., Schirrmeister, L., Grosse, G., Michaelson, G. J., Koven, C. D.,
O'Donnell, J. A., Elberling, B., Mishra, U., Camill, P., Yu, Z., Palmtag, J.,
and Kuhry, P.: Estimated stocks of circumpolar permafrost carbon with
quantified uncertainty ranges and identified data gaps, Biogeosciences,
11, 6573–6593, <a href="http://dx.doi.org/10.5194/bg-11-6573-2014" target="_blank">doi:10.5194/bg-11-6573-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>28</label><mixed-citation>
Huntington, T. G.: Evidence for intensification of the global water cycle:
Review and synthesis, J. Hydrol., 319, 83–95,
2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>29</label><mixed-citation>
Idso, S. B., Schmugge, T. J., Jackson, R. D., and Reginato, R. J.: The utility
of surface temperature measurements for the remote sensing of surface soil
water status, J. Geophys. Res., 80, 3044–3049,
1975.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>30</label><mixed-citation>
Jia, G. J.: Greening of arctic Alaska, 1981–2001, Geophys. Res. Lett.,
30, 2067, <a href="http://dx.doi.org/10.1029/2003GL018268" target="_blank">doi:10.1029/2003GL018268</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>31</label><mixed-citation>
Johnson, L. C., Shaver, G. R., Giblin, A. E., Nadelhoffer, K. J., Rastetter,
E. R., Laundre, J. A., and Murray, G. L.: Effects of drainage and temperature
on carbon balance of tussock tundra microcosms, Oecologia, 108,
737–748, 1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>32</label><mixed-citation>
Johnston, C. E., Ewing, S. A., Harden, J. W., Varner, R. K., Wickland, K. P.,
Koch, J. C., Fuller, C. C., Manies, K., and Jorgenson, M. T.: Effect of
permafrost thaw on CO<sub>2</sub> and CH<sub>4</sub> exchange in a western Alaska peatland
chronosequence, Environ. Res. Lett., 9, 085004,
<a href="http://dx.doi.org/10.1088/1748-9326/9/8/085004" target="_blank">doi:10.1088/1748-9326/9/8/085004</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>33</label><mixed-citation>
Jorgenson, M. T., Shur, Y. L., and Pullman, E. R.: Abrupt increase in
permafrost degradation in Arctic Alaska, Geophys. Res. Lett., 33,
L02503, <a href="http://dx.doi.org/10.1029/2005GL024960" target="_blank">doi:10.1029/2005GL024960</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>34</label><mixed-citation>
Kattsov, V. M. and Walsh, J. E.: Twentieth-century trends of Arctic
precipitation from observational data and a climate model simulation, J.
Clim., 13, 1362–1370,  2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>35</label><mixed-citation>
Kelley, J. J., Weaver, D. F., and Smith, B. P.: The variation of carbon
dioxide under the snow in the Arctic, Ecology, 49, 358–361,
1968.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>36</label><mixed-citation>
Kim, Y.: Effect of thaw depth on fluxes of CO<sub>2</sub> and CH<sub>4</sub> in manipulated Arctic
coastal tundra of Barrow, Alaska, Sci. Total Environ., 505, 385–389,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>37</label><mixed-citation>
Kirtman, B., Power, S. B., Adedoyin, J. A., Boer, G. J., Bojariu, R.,
Camilloni, I., Doblas-Reyes, F. J., Fiore, A. M., Kimoto, M., Meehl, G. A.,
Prather, M., Sarr, A., Schär, C., Sutton, R., Oldenborgh, G. J. van,
Vecchi, G., and Wan, H. J.: Near-term Climate Change: Projections and
Predictability, in Climate Change 2013: The Physical Science Basis,
Contribution of Working Group I to the Fifth Assessment Report of the
Intergovernmental Panel on Climate Change, Cambridge University Press,
Cambridge and New York, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>38</label><mixed-citation>
Koven, C. D., Ringeval, B., Friedlingstein, P., Ciais, P., Cadule, P.,
Khvorostyanov, D., Krinner, G., and Tarnocai, C.: Permafrost carbon-climate
feedbacks accelerate global warming, P. Natl. Acad. Sci. USA,
108, 14769–14774,  2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>39</label><mixed-citation>
Lakshmi, V., Jackson, T. J., and Zehrfuhs, D.: Soil moisture-temperature
relationships: results from two field experiments, Hydrol. Process., 17,
3041–3057,  2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>40</label><mixed-citation>
Lawrence, W. T. and Oechel, W. C.: Effects of soil temperature on the carbon
exchange of taiga seedlings, II. Photosynthesis, respiration, and
conductance, Can. J. For. Res., 13, 850–859,  1983.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>41</label><mixed-citation>
Lee, H., Schuur, E. A. G., Inglett, K. S., Lavoie, M., and Chanton, J. P.: The
rate of permafrost carbon release under aerobic and anaerobic conditions and
its potential effects on climate, Glob. Change Biol., 18,
515–527,  2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>42</label><mixed-citation>
Liljedahl, A. K., Boike, J., Daanen, R. P., Fedorov, A. N., Frost, G. V.,
Grosse, G., Hinzman, L. D., Iijma, Y., Jorgenson, J. C., Matveyeva, N.,
Necsoiu, M., Raynolds, M. K., Romanovsky, V. E., Schulla, J., Tape, K. D.,
Walker, D. A., Wilson, C. J., Yabuki, H., and Zona, D.: Pan-Arctic ice-wedge
degradation in warming permafrost and its influence on tundra hydrology, Nat.
Geosci., 9, 312–318,  2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>43</label><mixed-citation>
Luus, K. A. and Lin, J. C.: The Polar Vegetation Photosynthesis and
Respiration Model: a parsimonious, satellite-data-driven model of
high-latitude CO<sub>2</sub> exchange, Geosci. Model Dev., 8, 2655–2674,
<a href="http://dx.doi.org/10.5194/gmd-8-2655-2015" target="_blank">doi:10.5194/gmd-8-2655-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>44</label><mixed-citation>
Mahadevan, P., Wofsy, S. C., Matross, D. M., Xiao, X., Dunn, A. L., Lin, J.
C., Gerbig, C., Munger, J. W., Chow, V. Y., and Gottlieb, E. W.: A
satellite-based biosphere parameterization for net ecosystem CO<sub>2</sub> exchange:
Vegetation Photosynthesis and Respiration Model (VPRM), Global Biogeochem.
Cy., 22, GB2005, <a href="http://dx.doi.org/10.1029/2006GB002735" target="_blank">doi:10.1029/2006GB002735</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>45</label><mixed-citation>
Mastepanov, M., Sigsgaard, C., Dlugokenchy, E. J., Houweling, S., Ström,
L., Tamstorf, M. P., and Christensen, T. R.: Large tundra methane burst
during onset of freezing, Nature, 456, 628–630, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>46</label><mixed-citation>
Mastepanov, M., Sigsgaard, C., Tagesson, T., Ström, L., Tamstorf, M. P.,
Lund, M., and Christensen, T. R.: Revisiting factors controlling methane
emissions from high-Arctic tundra, Biogeosciences, 10, 5139–5158,
<a href="http://dx.doi.org/10.5194/bg-10-5139-2013" target="_blank">doi:10.5194/bg-10-5139-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>47</label><mixed-citation>
McEwing, K. R., Fisher, J. P., and Zona, D.: Environmental and vegetation
controls on the spatial variability of CH<sub>4</sub> emission from wet-sedge and
tussock tundra ecosystems in the Arctic, Plant Soil, 388, 37–52,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>48</label><mixed-citation>
Merbold, L., Kutsch, W. L., Corradi, C., Kolle, O., Rebmann, C., Stoy, P. C.,
Zimov, S. A., and Schulze, E. D.: Artificial drainage and associated carbon
fluxes (CO<sub>2</sub> ∕ CH<sub>4</sub>) in a tundra ecosystem, Glob. Change Biol., 15,
2599–2614, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>49</label><mixed-citation>
Myneni, R. B., Keeling, C. D., Tucker, C. J., Asrar, G., and Nemani, R. R.:
Increased plant growth in the northern high latitudes from 1981 to 1991,
Nature, 386, 698–702, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>50</label><mixed-citation>
Natali, S. M., Schuur, E. A. G., Mauritz, M., Schade, J., Celis, G., Crummer,
G., Johnston, C., Krapek, J., Pegoraro, E., Salmon, V., and Webb, E.:
Permafrost thaw and soil moisture drive CO<sub>2</sub> and CH<sub>4</sub> release from upland
tundra, J. Geophys. Res.-Biogeo., 120, 525–537,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>51</label><mixed-citation>
Niinemets, Ü.: Responses of forest trees to single and multiple
environmental stresses from seedlings to mature plants: Past stress history,
stress interactions, tolerance and acclimation, For. Ecol. Manage., 260,
1623–1639,  2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>52</label><mixed-citation>
O'Donnell, J. A., Jorgenson, M. T., Harden, J. W., McGuire, A. D., Kanevskiy,
M. Z., and Wickland, K. P.: The effects of permafrost thaw on soil hydrologic,
thermal, and carbon dynamics in an Alaskan peatland, Ecosystems,
15, 213–229, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>53</label><mixed-citation>
Oechel, W. C., Vourlitis, G. L., Hastings, S. J., Ault, R. P., and Bryant, P.:
The effects of water table manipulation and elevated temperature on the net
CO<sub>2</sub> flux of wet sedge tundra ecosystems, Glob. Change Biol., 4,
77–90,  1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>54</label><mixed-citation>
Oechel, W. C., Vourlitis, G. L., Hastings, S. J., Zulueta, R. C., Hinzman,
L.,
and Kane, D.: Acclimation of ecosystem CO<sub>2</sub> exchange in the Alaskan Arctic in
response to decadal climate warming, Nature, 406, 978–981, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>55</label><mixed-citation>
Olivas, P. C., Oberbauer, S. F., Tweedie, C. E., Oechel, W. C., and Kuchy, A.:
Responses of CO<sub>2</sub> flux components of Alaskan Coastal Plain tundra to shifts in
water table, J. Geophys. Res., 115, G00I05, <a href="http://dx.doi.org/10.1029/2009jg001254" target="_blank">doi:10.1029/2009jg001254</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>56</label><mixed-citation>
Overland, J. E., Wang, M., Walsh, J. E., and Stroeve, J. C.: Future Arctic
climate changes: Adaptation and mitigation time scales, Earth's Futur.,
2, 68–74,  2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>57</label><mixed-citation>
Panikov, N. S. and Dedysh, S. N.: Cold season CH<sub>4</sub> and CO<sub>2</sub> emission from
boreal peat bogs (West Siberia): Winter fluxes and thaw activation dynamics,
Global Biogeochem. Cy., 14, 1071–1080,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>58</label><mixed-citation>
Parkin, T. B. and Venterea, R. T.: Chamber-based trace gas flux measurements,
in: Sampling protocols, edited by: Follett, R. F.,  3.1–3.39., 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>59</label><mixed-citation>
Peterson, K. M., Billings, W. D., and Reynolds, D. N.: Influence of
water-table and atmospheric CO<sub>2</sub> concentration on the carbon balance of Arctic
tundra, Arct. Alp. Res., 16, 331–335,  1984.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>60</label><mixed-citation>
R Core Team: R: A language and environment for statistical computing,
available from: <a href="http://www.r-project.org" target="_blank">http://www.r-project.org</a> (last access: 20 June 2016), 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>61</label><mixed-citation>
Reginato, R. J., Idso, S. B., Vedder, J. F., Jackson, R. D., Blanchard, M.
B.,
and Goettelman, R.: Soil water content and evaporation determined by thermal
parameters obtained from ground-based and remote measurements, J. Geophys.
Res., 81, 1617–1620, 1976.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>62</label><mixed-citation>
Richards, J. A. and Xiuping, J.: Supervised classification techniques, in
Remote sensing digital image analysis: an introduction,
Springer-Verlag Berlin Heidelberg, 181–222, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>63</label><mixed-citation>
Rochette, P. and Hutchinson, G. L.: Measurement of soil respiration in situ:
chamber techniques, in Micrometeorology in Agricultural Systems,
American Society of Agronomy, Madison, USA, 247–286, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>64</label><mixed-citation>
Saugier, B., Roy, J., and Mooney, H. A.: Estimations of global terrestrial
productivity: converging toward a single number?, in: Terrestrial Global
Productivity,   Elsevier, 543–557, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>65</label><mixed-citation>
Schädel, C., Schuur, E. A. G., Bracho, R., Elberling, B., Knoblauch, C.,
Lee, H., Luo, Y., Shaver, G. R., and Turetsky, M. R.: Circumpolar assessment
of permafrost C quality and its vulnerability over time using long-term
incubation data, Glob. Change Biol., 20, 641–652,
2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>66</label><mixed-citation>
Schaefer, K., Zhang, T., Bruhwiler, L., and Barrett, A. P.: Amount and timing
of permafrost carbon release in response to climate warming, Tellus B,
63, 165–180,  2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>67</label><mixed-citation>
Schuur, E. A. G., Bockheim, J., Canadell, J. G., Euskirchen, E., Field, C.
B., Goryachkin, S. V., Hagemann, S., Kuhry, P., Lafleur, P. M., Lee, H.,
Mazhitova, G., Nelson, F. E., Rinke, A., Romanovsky, V. E., Shiklomanov, N.,
Tarnocai, C., Venevsky, S., Vogel, J. G., and Zimov, S. A.: Vulnerability of
permafrost carbon to climate change: Implications for the global carbon
cycle, Bioscience, 58, 701–714, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>68</label><mixed-citation>
Schuur, E. A. G., Vogel, J. G., Crummer, K. G., Lee, H., Sickman, J. O., and
Osterkamp, T. E.: The effect of permafrost thaw on old carbon release and net
carbon exchange from tundra, Nature, 459, 556–559,
2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>69</label><mixed-citation>
Schuur, E. A. G., McGuire, A. D., Schädel, C., Grosse, G., Harden, J. W.,
Hayes, D. J., Hugelius, G., Koven, C. D., Kuhry, P., Lawrence, D. M., Natali,
S. M., Olefeldt, D., Romanovsky, V. E., Schaefer, K., Turetsky, M. R., Treat,
C. C., and Vonk, J. E.: Climate change and the permafrost carbon feedback,
Nature, 520, 171–179, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib70"><label>70</label><mixed-citation>
Schwarz, P. A., Fahey, T. J., and Dawson, T. E.: Seasonal air and soil
temperature effects on photosynthesis in red spruce (Picea rubens) saplings,
Tree Physiol., 17, 187–194,  1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib71"><label>71</label><mixed-citation>
Serreze, M. C., Walsh, J. E., III, F. S. C., Osterkamp, T., Dyurgerov, M.,
Romanovsky, V., Oechel, W. C., Morison, J., Zhang, T., and Barry, R. G.:
Observational evidence of recent change in the northern high-latitude
environment, Climate Change, 46, 159–207,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib72"><label>72</label><mixed-citation>
Shaver, G. R. and Jonasson, S.: Productivity of Arctic ecosystems, in:
Terrestrial Global Productivity,  Elsevier,  189–210, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib73"><label>73</label><mixed-citation>
Stafford, J. M., Wendler, G., and Curtis, J.: Temperature and precipitation of
Alaska: 50 year trend analysis, Theor. Appl. Climatol., 67, 33–44,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib74"><label>74</label><mixed-citation>
Tarnocai, C., Canadell, J. G., Schuur, E. A. G., Kuhry, P., Mazhitova, G.,
Zimov, S., Tamocai, C., Canadell, J. G., Schuur, E. A. G., Kuhry, P.,
Mazhitova, G., Zimov, S., Tarnocai, C., Canadell, J. G., Schuur, E. A. G.,
Kuhry, P., Mazhitova, G., and Zimov, S.: Soil organic carbon pools in the
northern circumpolar permafrost region, Global Biogeochem. Cy., 23, GB2023,
<a href="http://dx.doi.org/10.1029/2008GB003327" target="_blank">doi:10.1029/2008GB003327</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib75"><label>75</label><mixed-citation>
Tscharntke, T., Hochberg, M. E., Rand, T. A., Resh, V. H., and Krauss, J.:
Author sequence and credit for contributions in multiauthored publications,
PLoS Biol., 5, e18, <a href="http://dx.doi.org/10.1371/journal.pbio.0050018" target="_blank">doi:10.1371/journal.pbio.0050018</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib76"><label>76</label><mixed-citation>
Webb, E. E., Schuur, E. A. G., Natali, S. M., Oken, K. L., Bracho, R.,
Krapek, J. P., Risk, D., and Nickerson, N. R.: Increased wintertime CO<sub>2</sub> loss
as a result of sustained tundra warming, J. Geophys. Res., 121,
249–265, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib77"><label>77</label><mixed-citation>
White, M. A., Running, S. W., and Thornton, P. E.: The impact of
growing-season length variability on carbon assimilation and
evapotranspiration over 88 years in the eastern US deciduous forest, Int. J.
Biometeorol., 42, 139–145, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib78"><label>78</label><mixed-citation>
Xia, J., Niu, S., Ciais, P., Janssens, I. A., Chen, J., Ammann, C., Arain,
A., Blanken, P. D., Cescatti, A., Bonal, D., Buchmann, N., Curtis, P. S.,
Chen, S., Dong, J., Flanagan, L. B., Frankenberg, C., Georgiadis, T., Gough,
C. M., Hui, D., Kiely, G., Li, J., Lund, M., Magliulo, V., Marcolla, B.,
Merbold, L., Montagnani, L., Moors, E. J., Olesen, J. E., Piao, S., Raschi,
A., Roupsard, O., Suyker, A. E., Urbaniak, M., Vaccari, F. P., Varlagin, A.,
Vesala, T., Wilkinson, M., Weng, E., Wohlfahrt, G., Yan, L., and Luo, Y.:
Joint control of terrestrial gross primary productivity by plant phenology
and physiology, P. Natl. Acad. Sci. USA, 112, 2788–2793,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib79"><label>79</label><mixed-citation>
Xu, L., Myneni, R. B., Chapin III, F. S., Callaghan, T. V., Pinzon, J. E.,
Tucker, C. J., Zhu, Z., Bi, J., Ciais, P., Tømmervik, H., Euskirchen, E.
S., Forbes, B. C., Piao, S. L., Anderson, B. T., Ganguly, S., Nemani, R. R.,
Goetz, S. J., Beck, P. S. A., Bunn, A. G., Cao, C., and Stroeve, J. C.:
Temperature and vegetation seasonality diminishment over northern lands,
Nature Climatic Change, 3, 581–586,  2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib80"><label>80</label><mixed-citation>
Zhou, T., Shi, P., Hui, D., and Luo, Y.: Global pattern of temperature
sensitivity of soil heterotrophic respiration (<i>Q</i><sub>10</sub>) and its implications for
carbon-climate feedback, J. Geophys. Res., 114, G02016,
<a href="http://dx.doi.org/10.1029/2008JG000850" target="_blank">doi:10.1029/2008JG000850</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib81"><label>81</label><mixed-citation>
Zimov, S. A., Semiletov, I. P., Daviodov, S. P., Voropaev, Y. V.,
Prosyannikov, S. F., Wong, C. S., and Chan, Y.-H.: Wintertime CO<sub>2</sub> emission
from soils of northeastern Siberia, Arctic, 46, 197–204,
1993.

</mixed-citation></ref-html>
<ref-html id="bib1.bib82"><label>82</label><mixed-citation>
Zimov, S. A., Davidov, S. P., Voropaev, Y. V., Prosiannikov, S. F.,
Semiletov, I. P., Chapin, M. C., and Chapin, F. S.: Siberian CO<sub>2</sub> efflux in
winter as a CO<sub>2</sub> source and cause of seasonality in atmospheric CO<sub>2</sub>,
Climate
Change, 33, 111–120,  1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib83"><label>83</label><mixed-citation>
Zona, D., Lipson, D. A., Zulueta, R. C., Oberbauer, S. F., and Oechel, W. C.:
Microtopographic controls on ecosystem functioning in the Arctic Coastal
Plain, J. Geophys. Res., 116, G00I08, <a href="http://dx.doi.org/10.1029/2009JG001241" target="_blank">doi:10.1029/2009JG001241</a>, 2011.
</mixed-citation></ref-html>--></article>
