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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-4659-2016</article-id><title-group><article-title>Inorganic carbon cycling and biogeochemical processes <?xmltex \hack{\newline}?>in an Arctic inland
sea (Hudson Bay)</article-title>
      </title-group><?xmltex \runningtitle{Inorganic carbon cycling and biogeochemical processes}?><?xmltex \runningauthor{W. J. Burt et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Burt</surname><given-names>William J.</given-names></name>
          <email>wburt@eos.ubc.ca</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Thomas</surname><given-names>Helmuth</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6720-8434</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Miller</surname><given-names>Lisa A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Granskog</surname><given-names>Mats A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Papakyriakou</surname><given-names>Tim N.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Pengelly</surname><given-names>Leah</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Oceanography, Dalhousie University, Halifax, Nova
Scotia, Canada</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Earth, Ocean and Atmospheric Sciences, University of
British Columbia, Vancouver, <?xmltex \hack{\newline}?>British Columbia, Canada</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney,
British Columbia, Canada</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Norwegian Polar Institute, Fram Centre, 9296 Tromsø, Norway</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Centre for Earth Observation Science, University of Manitoba,
Winnipeg, Manitoba, Canada</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">William J. Burt (wburt@eos.ubc.ca)</corresp></author-notes><pub-date><day>19</day><month>August</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>16</issue>
      <fpage>4659</fpage><lpage>4671</lpage>
      <history>
        <date date-type="received"><day>11</day><month>May</month><year>2016</year></date>
           <date date-type="rev-request"><day>18</day><month>May</month><year>2016</year></date>
           <date date-type="rev-recd"><day>2</day><month>August</month><year>2016</year></date>
           <date date-type="accepted"><day>3</day><month>August</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016.html">This article is available from https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016.pdf</self-uri>


      <abstract>
    <p>The distributions of carbonate system parameters in Hudson Bay,
which not only receives nearly one-third of Canada's river discharge but
is also subject to annual cycles of sea-ice formation and melt,
indicate that the timing and magnitude of freshwater inputs play an
important role in carbon biogeochemistry and acidification in this unique
Arctic ecosystem. This study uses basin-wide measurements of dissolved
inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope
tracers (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, to provide a
detailed assessment of carbon cycling processes within the bay. Surface
distributions of carbonate parameters reveal the particular importance of
freshwater inputs in the southern portion of the bay. Based on TA, we
surmise that the deep waters in the Hudson Bay are largely of Pacific
origin. Riverine TA end-members vary significantly both regionally and with
small changes in near-surface depths, highlighting the importance of careful
surface water sampling in highly stratified waters. In an along-shore
transect, large increases in subsurface DIC are accompanied by equivalent
decreases in <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> with no discernable change in TA,
indicating a respiratory DIC production on the order of 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> DIC during deep water circulation around the bay.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Bathymetric map of the Hudson Bay system showing stations sampled
during the 2010 ArcticNet mission (black dots). Shaded areas denote
ice-covered regions as of 12 July  2010, determined using weekly
regional ice extent maps (Environment Canada, Canadian Ice Service,
<uri>http://www.ec.gc.ca/glaces-ice/</uri>). The location of the 185 m sill in the
central channel connecting Hudson Bay with Foxe Strait and Hudson Strait is
marked with a black star. The dashed box around the Nelson and Hayes River
estuaries includes the stations shown in Fig. 5.</p></caption>
      <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016-f01.png"/>

    </fig>

<?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>The Arctic Ocean is particularly vulnerable to “ocean acidification”
(defined as the combined results of decreasing pH and increasing calcium
carbonate solubility), because changes in pH and carbonate ion concentration
in response to a given uptake of atmospheric CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> are more pronounced in
cold, low-alkalinity waters compared to warm waters with high alkalinity.
Furthermore, inflowing Pacific water with naturally high CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
concentrations, as well as dilution from sea-ice melt and river waters,
exacerbates the so-called “vulnerability” of polar waters (AMAP, 2013;
Shadwick et al., 2013). Freshwater input can directly reduce the buffering
capacity of seawater, and dilutes carbonate ions, thereby decreasing the
saturation states of calcite (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ca</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and aragonite (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, minerals that many important marine species require to form their
shells (e.g., Chierici and Fransson, 2009; Yamamoto-Kawai et al., 2009).
Therefore, regions of the Arctic Ocean are predicted to be among the first
to experience the damaging effects of ocean acidification (Orr et al., 2005;
Fabry et al., 2009).</p>
      <p>The Hudson Bay system receives nearly one-third of Canada's river discharge,
and Hudson Bay itself goes from complete ice cover in winter to open water
in summer, culminating in an annual freshwater yield from river runoff and
sea-ice melt that is more than double that of the Arctic Ocean (Granskog et
al., 2011). Organic matter respiration releases dissolved inorganic carbon
(DIC) and consumes total alkalinity (TA), which decreases the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ca</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deep waters. In addition to the organic
matter generated in the euphotic zone by primary producers, local riverine
inputs of organic matter are injected into deep waters during sea-ice
formation (Mundy et al., 2010; Granskog et al., 2011). Furthermore, at the
mouth of Hudson Bay, shallow sills restrict the exchange of deep water
between the bay and the relatively well ventilated waters from the adjacent
Hudson Strait or Foxe Strait (Granskog et al., 2011). Given these
characteristics, Hudson Bay may be particularly vulnerable to ocean
acidification. In support of this, Azetsu-Scott et al. (2014) recently
provided the first basin-wide overview of the Hudson Bay carbonate system in
fall 2005, reporting that surface waters in southeastern Hudson Bay, where
freshwater inputs are highest, were undersaturated with respect to aragonite
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> &lt; 1), as were up to two-thirds of Hudson Bay
bottom waters.</p>
      <p>With air temperatures rising, sea-ice coverage declining, and increasing
river diversion for hydroelectricity generation, conditions in the Arctic,
and Hudson Bay in particular, are changing much more rapidly than in much of
the world's oceans. The Hudson Bay system is one of the richest eco-regions
for marine mammals in the world and is critical for both resident and
migratory species (Wilkinson et al., 2009). Regime shifts in this ecosystem
could therefore result in cascading effects impacting multiple organisms and
coastal communities. The 2005 fall survey by Azetsu-Scott et al. (2014)
provided an initial baseline for understanding of the state of the CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
system in Hudson Bay, yet significant uncertainties remain regarding the
biogeochemical processes responsible for the observed state of the marine
carbonate system and how the system and its controlling processes have
changed, or may continue to change, over time.</p>
      <p>Here, we present recent (July 2010) seawater measurements of the marine
carbonate system along with stable isotope ratios of oxygen in seawater
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O) and DIC (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> across Hudson
Bay. Surface distributions highlight the impact of different freshwater
inputs on the carbonate system. Relationships of DIC and TA with salinity in
deep water provide insight into the origin of waters in Hudson Bay, while
similar relationships in shallow water describe key sources and sinks of
carbon. We also evaluate the evolution of water mass properties during
transit around Hudson Bay and the importance of precise sampling techniques
when working in highly stratified waters.</p>
</sec>
<sec id="Ch1.S2">
  <title>The Hudson Bay system</title>
      <p>The Hudson Bay system, which includes James Bay to the south, and both Foxe
and Hudson straits to the north, is shown in Fig. 1. Hudson Bay itself is
the largest inland sea in North America (Martini, 1986), covering an area of
841 000 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> (Kuzyk et al., 2009). Hudson Bay is relatively shallow,
with an average depth of 125 m and a maximum depth of 250 m, while areas of
Foxe Strait and Hudson Strait reach depths of 400 m (Prinsenberg, 1987;
Saucier et al., 2004). Water enters the Hudson Bay system from two channels.
Waters that are predominantly of Pacific origin enter from the north,
flowing from the Canadian Archipelago into Foxe Basin and Foxe Strait via
the Fury and Hecla Strait, while Atlantic waters enter from the east,
flowing from the Labrador Sea into the Hudson Strait (Ingram and
Prinsenberg, 1998). Hudson Bay is connected to Foxe and Hudson straits via
four main channels. The narrow channel west of Southampton Island is only 50 m deep but is considered an important source of water to the northwest
corner of the bay (Prinsenberg, 1986). The majority of water exchange occurs
via three channels located between southwest Southampton Island and the east
coast of Hudson Bay. The outer channels are only 130 m deep; thus, exchange
of deep waters is likely limited to the central channel, which contains a
sill at 185 m depth (Fig. 1, black star).</p>
      <p>Within Hudson Bay, the circulation is generally cyclonic (counterclockwise),
with a mean summertime current velocity of
0.05 m s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Martini, 1986; Prinsenberg, 1986). During transit, coastal
surface waters are substantially modified by river inputs, which total
approximately 760 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Déry et al., 2011). The vast
majority of this input enters via James Bay (47 % of the total) and from
rivers along the southern coast (from the Churchill to the Great Whale; see
Fig. 1) that drain directly into Hudson Bay (32 % of the total input).
The peak river input (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> day<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> occurs in
May, while the minimum (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> day<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> occurs in
March (Déry et al., 2011). Freshwater is also added to surface waters
via sea-ice melt (SIM). Hudson Bay is completely ice-covered for 8–9 months
of the year and becomes completely ice-free in the summer. Sea ice can reach
a maximum thickness of about 1 m in James Bay, 1.5 m in Hudson Bay, and 2 m
in Foxe Basin (Martini, 1986). In Hudson Bay, peak inputs from SIM are from
June to mid-July, and during this time SIM usually provides more freshwater
to surface waters than river runoff (Prinsenberg, 1988; Granskog et al.,
2011). The pulse of meltwater also creates strong vertical stratification,
which suppresses mixing of heat and nutrients into the surface waters
(Prinsenberg, 1988; Else et al., 2008). Ice formation is also responsible
for brine formation due to salt rejection (Saucier et al., 2004; Granskog et
al., 2011).</p>
</sec>
<sec id="Ch1.S3">
  <title>Methods</title>
      <p>We collected samples at 55 stations, including 16 rivers, across the Hudson
Bay system from 7 to 30 July 2010, during leg 1a of the 2010
ArcticNet cruise aboard the CCGS <italic>Amundsen</italic> (Fig. 1). Water samples for
salinity, DIC, TA, and stable isotopes of both oxygen in seawater (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O) and DIC (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were collected at various
depths using 12 L Niskin bottles mounted on a 24-bottle rosette fit with a
Sea-Bird SBE911 conductivity–temperature–depth (CTD) profiler. Niskin bottles
were held at each depth for 1 min before closing to allow for adequate
flushing. A small subset of samples collected in the Nelson River estuary,
as well as river samples, were taken using either a single 3 L Niskin bottle
hand-lowered to 1 m depth (for DIC, TA, and associated salinities) or a bucket hand-lowered to less than 1 m depth (for <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O, <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula>, and associated salinities).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Surface distributions of salinity <bold>(a)</bold>, TA <bold>(b)</bold>, DIC <bold>(c)</bold>, aragonite
saturation state (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> <bold>(d)</bold>, sea-ice-melt fraction
(<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM) <bold>(e)</bold>, meteoric water fraction (<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_MW)
<bold>(f)</bold>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> (<bold>g</bold>, samples only collected during first
half of the cruise). Nelson River is shown as a blue line. Note that <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(d)</bold> is above 1 at all stations.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016-f02.png"/>

      </fig>

      <p>Samples for DIC and TA determination were taken directly from the Niskin
bottles into borosilicate glass bottles: 250 or 500 mL bottles with
ground-glass stoppers and elastic closures or 250 mL screw-cap bottles. All
DIC and TA samples were poisoned with 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L of a saturated
HgCl<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> solution to halt biological activity and were stored in the dark
at either room temperature or 4 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until being processed ashore. The
DIC and TA determinations were conducted at both Dalhousie University in
Halifax, Nova Scotia, and the Institute of Ocean Sciences (IOS) in Sidney,
British Columbia. Both labs analyzed samples for DIC coulometrically
followed by TA determination from the same bottle using potentiometric
titrations. At Dalhousie, both DIC and TA were measured using a VINDTA 3C
(Versatile Instrument for the Determination of Titration Alkalinity,
Marianda), whereas IOS measured DIC using a SOMMA (Single-Operator
Multiparameter Metabolic Analyzer) and TA with a custom-built titration
system. The analytical methods followed the recommendations of Dickson et al. (2007). Both labs used certified reference materials (CRM batches 101
and 81) supplied by A. G. Dickson (Scripps Institution of Oceanography) to
consistently calibrate the instruments. Samples measured by the IOS lab have
an analytical precision better than 0.9 for DIC and 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for TA. An equivalent precision computation could not be
done for samples analyzed at Dalhousie due to a lack of duplicate samples,
but, historically, precision of the Dalhousie VINDTA system has been
consistently better than 3 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (e.g., Shadwick et al.,
2011). We computed the aragonite saturation state (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from
the DIC and TA data using the CO2SYS program of Lewis and Wallace (1998), with the
equilibrium constants of Mehrbach et al. (1973) refit by Dickson and Millero (1987).</p>
      <p>At station 740 in central Hudson Bay (Fig. 1), an inter-calibration between
the IOS and Dalhousie labs was conducted wherein duplicate samples were
taken from all 12 Niskin bottles, with each lab producing independent depth
profiles of both DIC and TA. Anomalously high deviations in both DIC and TA
were measured at the bottom-most sample, and CTD profiles at this station
reveal distinct changes in temperature and salinity in the bottom 4 m of the water column, suggesting the presence of a bottom nepheloid
layer. Given that the bottom Niskin bottle was closed within this layer, the
large deviations in both DIC and TA between duplicate samples may be due to
large geochemical gradients or high concentrations of suspended material in
the Niskin bottle. Not including these bottom samples, mean absolute
differences in DIC and TA samples between the two labs were 2.4 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.9 and 12.6 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6.8 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively.
Deviations in TA between the 11 duplicate samples (bottom sample not
included) were not consistently positive or negative; thus, an offset
correction could not be applied to either dataset prior to merging. Although
this average TA difference represents significant variability between the
two datasets, TA alterations of this magnitude do not alter the key results
of this study and thus are not important in the context of this discussion.
For example, a <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>12.6 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> change in surface water TA
at all stations results in an average change in surface water <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.12, with no visible change in spatial patterns
throughout the Hudson Bay and with no stations moving from supersaturation
to undersaturation, or vice versa. Also, patterns in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> along
the coastal transect in Hudson Bay, including the depth of the saturation
horizon, do not change significantly given a 12.6 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> change
in TA. Furthermore, it has to be noted that the sampling strategy used in
this study was not ideal for intercalibration purposes, since it took place
in highly variable, relatively shallow waters as opposed to stable deep ocean waters.</p>
      <p>Samples for <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> determination were collected in 30 mL
vacuum-sealed glass vials and spiked with 60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L of saturated HgCl<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
solution to halt biological activity. Measurement of <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> was conducted at Yale University using continuous-flow
isotope-ratio-monitoring mass spectrometry (CF-irmMS) on Thermo Finnigan MAT
253 gas mass spectrometers coupled to a Thermo Electron GasBench II via a
Thermo Electron Conflo IV split interface. The analytical method has a
reproducibility of better than <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.1 ‰. Samples
for the oxygen isotopic composition of water (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O) were
collected in 20 mL borosilicate glass vials, sealed with Parafilm to
minimize evaporation, and stored at 4 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Measurements were conducted at
the G.G. Hatch Stable Isotope Laboratory (University of Ottawa) using a
Finnigan MAT Delta plus XP <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> GasBench. A 0.2 to 0.6 mL subsample was
flushed with 2 % CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in helium before being stored for at least 18 h to achieve equilibration. Stable carbon and oxygen isotope ratios are
expressed in the usual delta (<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula>) notation as per mil
(‰) deviation relative to the international VPDB
(Vienna Pee Dee Belemnite) and V-SMOW (Vienna Standard Mean Ocean Water)
standards, respectively. Salinity samples were analyzed on board the
<italic>Amundsen</italic> using a Guildline 8004B Autosal Laboratory salinometer calibrated
with standard seawater from the International Association for the Physical
Sciences of the Oceans (IAPSO).</p>
      <p>The fractions of sea-ice meltwater (<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM) and meteoric
water (<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_MW) are calculated using bottle salinities and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O in a three-end-member mixing model. The methods,
equations, and end-member values (for seawater, sea-ice meltwater, and
meteoric water) used in the model are identical to those described by
Granskog et al. (2011).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Data summary for Hudson Bay rivers. NA: data not available.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">River</oasis:entry>  
         <oasis:entry colname="col2">Discharge<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">Date sampled</oasis:entry>  
         <oasis:entry colname="col4">Salinity</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">DOC<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">[‰]</oasis:entry>  
         <oasis:entry colname="col6">This study [‰]</oasis:entry>  
         <oasis:entry colname="col7">Previous [‰]</oasis:entry>  
         <oasis:entry colname="col8">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>]</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Northeast</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Polemund</oasis:entry>  
         <oasis:entry colname="col2">NA</oasis:entry>  
         <oasis:entry colname="col3">10-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.82</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.53</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.64 (Aug-07)</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Povungnituk</oasis:entry>  
         <oasis:entry colname="col2">11.6</oasis:entry>  
         <oasis:entry colname="col3">10-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.13</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>15.69</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.97 (Sep-05)</oasis:entry>  
         <oasis:entry colname="col8">194</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Kogaluc</oasis:entry>  
         <oasis:entry colname="col2">4.9</oasis:entry>  
         <oasis:entry colname="col3">10-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.56</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.58</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.26 (Aug-07)</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Innuksuac</oasis:entry>  
         <oasis:entry colname="col2">3.3</oasis:entry>  
         <oasis:entry colname="col3">11-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.85</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12.72 (Sep-05)</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Southeast</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Nastapoca</oasis:entry>  
         <oasis:entry colname="col2">7.9</oasis:entry>  
         <oasis:entry colname="col3">12-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">0.02</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.86</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.27</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.86 (Jun-06)</oasis:entry>  
         <oasis:entry colname="col8">256 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Little Whale</oasis:entry>  
         <oasis:entry colname="col2">3.7</oasis:entry>  
         <oasis:entry colname="col3">12-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.69</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.48</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.84 (Jun-06)</oasis:entry>  
         <oasis:entry colname="col8">304 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Great Whale</oasis:entry>  
         <oasis:entry colname="col2">19.8</oasis:entry>  
         <oasis:entry colname="col3">13-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">0.33</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.17</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.64 (Jun-06)</oasis:entry>  
         <oasis:entry colname="col8">268 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 4)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Northwest</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Wilson</oasis:entry>  
         <oasis:entry colname="col2">NA</oasis:entry>  
         <oasis:entry colname="col3">18-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.95</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.93</oasis:entry>  
         <oasis:entry colname="col7">NA</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Ferguson</oasis:entry>  
         <oasis:entry colname="col2">2.6</oasis:entry>  
         <oasis:entry colname="col3">18-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.93</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>16.22</oasis:entry>  
         <oasis:entry colname="col7">NA</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Tha-anne</oasis:entry>  
         <oasis:entry colname="col2">6.2</oasis:entry>  
         <oasis:entry colname="col3">19-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.56</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>16.82</oasis:entry>  
         <oasis:entry colname="col7">NA</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Thlewiaza</oasis:entry>  
         <oasis:entry colname="col2">6.9</oasis:entry>  
         <oasis:entry colname="col3">19-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.18</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>16.08</oasis:entry>  
         <oasis:entry colname="col7">NA</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Southwest</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Churchill</oasis:entry>  
         <oasis:entry colname="col2">20.6</oasis:entry>  
         <oasis:entry colname="col3">20-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12.71</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.59 (Oct-05)</oasis:entry>  
         <oasis:entry colname="col8">1180</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Severn</oasis:entry>  
         <oasis:entry colname="col2">21.2</oasis:entry>  
         <oasis:entry colname="col3">28-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.01</oasis:entry>  
         <oasis:entry colname="col7">NA</oasis:entry>  
         <oasis:entry colname="col8">NA</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Winisk</oasis:entry>  
         <oasis:entry colname="col2">14.7</oasis:entry>  
         <oasis:entry colname="col3">27-Jul-10</oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.76</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.68 (Oct-05)</oasis:entry>  
         <oasis:entry colname="col8">199</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Hayes</oasis:entry>  
         <oasis:entry colname="col2">18.6</oasis:entry>  
         <oasis:entry colname="col3">24-Jul-10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.45</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12.40 (Jul-05)</oasis:entry>  
         <oasis:entry colname="col8">935</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Nelson</oasis:entry>  
         <oasis:entry colname="col2">94.2</oasis:entry>  
         <oasis:entry colname="col3">24-Jul-10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">NA</oasis:entry>  
         <oasis:entry colname="col5">NA</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.81</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.64 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.52<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">814</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula> Assumed sampling date (actual sampling date was not recorded).
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Average and standard deviation of 344 samples taken between January 2010 and July 2013, from Smith et
al. (2015).
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> From Déry et al. (2005).
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> From Granskog et al. (2011). Date (mm-yr) when sample was collected is shown in brackets.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> From Mundy et al. (2010). Some values are averaged from multiple data sources (indicated with an “<inline-formula><mml:math display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>” value).</p></table-wrap-foot></table-wrap>

</sec>
<sec id="Ch1.S4">
  <title>Results and discussions</title>
<sec id="Ch1.S4.SS1">
  <title>Surface distributions</title>
      <p>Surface distributions within Hudson Bay (Fig. 2) reveal the dominant role
that freshwater input plays in altering the carbonate system parameters of
surface waters, particularly in the southern and eastern parts of the bay.
Distributions of TA (Fig. 2b), DIC (Fig. 2c), and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. 2d)
mimic that of salinity (Fig. 2a), with maxima in the high-salinity waters of
the Hudson and Foxe straits and minima along the southern coast of Hudson
Bay. One notable exception, however, is near the Nelson River (Fig. 1),
where stations exhibit low salinities but relatively high DIC, TA, and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. The dilution of carbonate parameters by freshwater is more
pronounced for sea-ice melt (DIC and TA 300–600 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; e.g.,
Miller et al., 2011) compared to river outflow (river DIC and TA
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 700–1800 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Azetsu-Scott et al., 2014, and
this study), and thus distributions of DIC, TA, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in the
southern Hudson Bay likely reflect the variable impacts of river runoff and
sea-ice melt on the carbonate system.</p>
      <p>The Nelson River has the highest freshwater discharge of any single river in the
Hudson Bay system, and nearly half of the river runoff into Hudson Bay
enters via James Bay. These hydrographical features are well illustrated by
the distribution of meteoric water fractions (<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_MW)
throughout the region (Fig. 2f). In contrast, the fractions of sea-ice melt
(<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM) are highest along the southern coast of Hudson Bay
(Fig. 2e), near the comparatively small Severn and Winisk rivers (with
respective discharges one-quarter and one-sixth that of the Nelson River, Table 1). This region of high <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM corresponds well to the
observed sea-ice distributions shown in Fig. 1. It is important to note that
the high positive <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM observed near the Nelson River is due
to the use of a single flow-averaged <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O end-member for
meteoric water (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14 ‰, Granskog et al., 2011) near a
river with a considerably higher <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.8 ‰, Table 1). Overall, riverine <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O
signatures measured here agree well with those observed in previous studies,
especially when comparing measurements made in/around the month of July
(Table 1). Also note that, despite considerable freshwater input near James
Bay, aragonite remains supersaturated (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> &gt; 1) at
all stations in surface waters (Fig. 2d).</p>
      <p>The surface distributions shown in Fig. 2 also align with the general
circulation patterns of the Hudson Bay system. For example, differences can
be seen between stations in the northern part of Hudson Strait, where
Labrador Sea waters with characteristically high salinity, DIC, and TA flow
into the Hudson Bay system, and stations at the southern side of the strait,
where Hudson Bay outflow with lower salinity and TA, as well as higher
<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_MW, travels east towards the Labrador Sea. The high-salinity water in northwestern Hudson Bay represents water recently
introduced from Foxe and Hudson straits, with salinities generally
decreasing in a counterclockwise fashion due to freshwater inputs. At the
mouth of James Bay, the salinity and carbonate parameters are higher on the
western edge, where waters enter the bay, compared to the eastern edge,
where waters altered by large James Bay rivers exit back into Hudson Bay. At
the eastern edge of the mouth of James Bay, we recorded the minimum salinity
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 21.71), TA (1705 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and DIC (1624 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, as well as the second lowest <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (1.04), among the
“seawater” samples from our entire study.</p>
      <p>The surface distributions of carbonate parameters throughout the Hudson Bay
system are similar to those reported by Azetsu-Scott et al. (2014) for
September 2005. Concentrations within Hudson Strait and Foxe Strait are
comparable, and the north–south gradient within Hudson Strait is apparent in
both years. Within Hudson Bay, concentrations are distinctively lower than
in waters outside the bay, with values decreasing further from the northwest
toward the southeast. Aragonite saturation (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in surface
waters does not show any significant differences between 2005 and 2010, with
surface waters approaching saturation at the mouth of James Bay in both
years. However, subtle differences do exist between these datasets. Stations
in southern Hudson Bay have lower salinity, DIC, TA, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in
2010, whereas stations located further downstream, near the eastern edge of
the bay, have lower values in 2005. Rather than reflecting basin-wide
changes over the 5-year period, these differences can be ascribed to the
seasonal timing of sample collection and general circulation patterns. That
is, stations along the southern coast are impacted by substantial SIM in
July as the remaining ice is melting, and the cyclonic circulation is
capable of transporting such low-salinity water along the eastern edge of
Hudson Bay over a 2-month period (i.e., from July to September; cf.
Granskog et al., 2009).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Deep (&gt; 100 m) water TA <bold>(a)</bold> and DIC <bold>(b)</bold> against
salinity throughout the Hudson Bay system. The * represents the end-member
properties of Pacific-origin Upper Halocline Water (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 33.1, TA <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2283 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
DIC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2236 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and the black “x”
represents Atlantic Water (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 34.8, TA <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2301 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
DIC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2154 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, as defined by Shadwick et al. (2011).
Hud Bay: Hudson Bay samples; Foxe: Foxe Strait samples; Hud
Strait: Hudson Strait samples.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016-f03.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <title>Hudson Bay source waters</title>
      <p>The main conduits for Pacific and Atlantic waters to the Hudson Bay system
(HBS) are Fury and Hecla Strait (located north of Foxe Strait) and Hudson
Strait, respectively. Yet it remains unclear whether Hudson Bay is composed
primarily of Pacific or Atlantic waters. Jones et al. (2003) surmised that
Pacific waters were more prevalent in Hudson Bay but were unable to provide
conclusive evidence, due to limitations in the quantity and quality of their
data. In regions like Hudson Bay, with multiple seawater and freshwater
end-members, mass-balance calculations for unraveling freshwater components
are particularly complicated, and in contrast to systems such as the coastal
Beaufort Sea, where three rather distinct end-members (the Mackenzie River,
sea-ice melt, and a primarily Pacific polar mixed layer) can be defined by
two tracers (Macdonald et al., 1995), a similarly rigorous analysis in
Hudson Bay would require additional end-members and tracers.</p>
      <p>When examining the relationship between TA and salinity throughout the HBS
(Fig. 3a), waters below 100 m depth in Hudson Bay are indistinguishable from
those in Foxe Strait, and both are distinctly different from deep waters in
Hudson Strait. Furthermore, data from Hudson Bay and Foxe Strait are well
aligned with the Pacific water end-member, while data from Hudson Strait
fall along a mixing line with the Atlantic water end-member (Shadwick et
al., 2011; Fig. 3a). This indicates that deep water from Hudson Strait does
not enter Foxe Strait and that the vast majority of water that flows over
the 185 m sill into Hudson Bay is likely of Pacific origin. In addition,
some samples in the Hudson Bay/Foxe Strait dataset have higher salinity and
TA than the Pacific water end-member, yet still fall along the extension of
the general mixing line (Fig. 3a), suggesting an additional source of both
TA and salinity. One plausible source of excess TA and salinity in deep
waters is from brine rejection. It is known that deep water formation occurs
in Foxe Basin polynyas, and this water can flow into Foxe Strait and
potentially further into Hudson Bay (Defossez et al., 2010). However, there
is evidence in Hudson Bay that deep waters can also form locally due to
brine rejection (Granskog et al., 2011). The same general patterns are shown
in a plot of deep water DIC against salinity (Fig. 3b), except that
distinctly higher DIC is observed in Hudson Bay compared to Foxe Strait due
to the build-up of respiratory DIC in Hudson Bay, which is discussed in
greater detail below.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Hudson Bay TA vs. salinity (<inline-formula><mml:math display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>) in the upper 60 m of the water
column (which should contain seasonal freshwater inputs; see Granskog et
al., 2011). Hudson Bay stations (black diamonds, regression line TA <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 48.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> 689.2) do not include the station located northeast of the sill
in the central channel (see Fig. 1). Stations in southwestern Hudson Bay
(red squares, regression line TA <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 50.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> 225.8) refer to
“705”
stations (see Fig. 5), and station 706 slightly further north (see Fig. 1),
while inner Nelson River estuary stations (“Inner-NRE”; blue triangles, regression line
TA <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 9.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> 1870.0) refer to “B” stations shown in Fig. 5. Riverine
end-members (TA at zero salinity, or TA<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and their corresponding
uncertainties are calculated using linear least-squares regression and the
error associated with the linear fit, respectively. Inset: Hudson Bay
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O vs. salinity with same sample legend as the main figure
(symbols are filled for clarity). The regression line (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>–11.6) is placed through Hudson Bay samples. It is important to note
that, for some surface water samples, <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O and its corresponding
salinity were collected independently of TA and its corresponding
salinity; therefore, high <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM (calculated using <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O) may not be present in TA samples. This may explain why some
samples with high <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM show little to no negative deviation
in TA (purple circles).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016-f04.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS3">
  <title>Freshwater inputs</title>
      <p>Prior studies have revealed the importance of watershed geology in governing
the highly variable compositions of Hudson Bay rivers (Mundy et al., 2010;
Granskog et al., 2011; Azetsu-Scott et al., 2014; see also Thomas and
Schneider, 1999), yet relatively little is known regarding the impact of
varying river inputs on the inorganic carbon system of Hudson Bay.
Variations in TA with salinity in the top 60 m of the water column of Hudson
Bay (Fig. 4) reveal two distinct freshwater end-members: a lower TA
end-member of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 700 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, corresponding to the
vast majority of stations in the bay, and a high-TA end-member of
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1900 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for samples collected within the
Nelson River estuary (NRE, Figs. 1 and 5). Figure 4 also highlights the
various impacts of sea-ice melt, as samples with high <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM
(purple circles) show distinct positive deviations from the <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O vs. salinity mixing line (Fig. 4, inset), as well as negative
deviations from the TA vs. salinity mixing line, due to the enriched <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O signature (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>SIM</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0 ‰)
and low TA concentration characteristic of sea-ice melt. The negative TA
deviation in sea-ice meltwaters also indicates that there is no significant
source of TA from the dissolution of ikaite (CaCO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> during sea-ice melt
(see Rysgaard et al., 2011) in this area.</p>
      <p>Considering that samples with potential inputs of brine (i.e., deeper
waters) and discernable sea-ice melt input (i.e., stations with
<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.05) are not included in the best-fit
regressions, the lower alkalinity end-member (that is, TA <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 689 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> likely represents the average riverine TA for the entire Hudson
Bay. This end-member aligns with the prior estimate for “rivers” of 754 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, also derived from regression lines of samples collected
within the bay and not from the rivers, themselves, along the eastern shore
of Hudson Bay (Azetsu-Scott et al., 2014). Stations in southwestern Hudson
Bay, nearest to the Churchill, Nelson, and Hayes rivers (Fig. 4, red
squares, “705” stations and station 706; see Figs. 1 and 5), have a similar
salinity–TA relationship to that observed throughout Hudson Bay but are
vertically offset to a slightly elevated TA. This TA offset is not related
to the merging of the two TA datasets, as the stations labeled as “SW
Hudson Bay” (see Fig. 4) comprise a small subset of the TA data measured at
IOS. Also, the magnitude of this vertical TA offset (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is much larger than the average deviation observed between
the datasets. Instead, this offset likely indicates input of carbonate ion
from the dissolution of carbonate minerals. For salinity vs. DIC, the same
offset is visible but is less pronounced, which also points towards benthic
carbonate ion addition. Azetsu-Scott et al. (2014) attributed their
observations of high TA in the deep waters of southwestern Hudson Bay to
dissolution the carbonate-rich bedrock (defined as the Hudson Bay Lowland)
that underlies this area of the bay, as well as much of the Nelson River
drainage basin.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Salinity cross section (top 10 m) in the Nelson River estuary
(NRE). Location of transect is shown by the inset map in the lower right
(see Fig. 1 for location of the NRE within Hudson Bay). Vertical black lines
represent CTD profiles, while black dots (depths <inline-formula><mml:math display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 1 m) represent
samples taken independently using the single 3 L Niskin (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 m
depth, stations B6, B8, B12) and samples taken using the bucket
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.3 m depth at stations 705 a, b, c). Black X's show the
depth where surface Niskin bottles were closed, as recorded by the CTD's
pressure sensor, while the black vertical arrows extend to the depth where
salinities in the Niskin bottles match the salinity recorded by the CTD.
Prior to closing each Niskin bottle, the rosette was held at the target
depth for 1 min to allow for adequate flushing and stabilization (Y.
Gratton, personal communication, 2016). At all three rosette stations (705 a, b, c), Niskin
bottle salinities are markedly higher than the CTD salinities at the closure
depth, suggesting that higher-salinity waters were entrained into surface
waters by the rosette system.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016-f05.png"/>

        </fig>

      <p>We attribute the high-TA end-member (1870 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to the Nelson
River. A similarly high TA end-member has been reported for the Mackenzie
River (1540 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Cooper et al., 2008) and time-series
measurements collected from the Churchill River (Fig. 1) during the summer
of 2007 reveal an average TA of 1394 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 80 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(Stainton, 2009). According to Mundy et al. (2010), the Churchill, Nelson,
and Hayes rivers (Fig. 1) have dissolved organic carbon (DOC) concentrations
that are 2–6 times greater than other Hudson Bay rivers (Table 1), and these
authors attributed variability in riverine DOC to the vastly differing
watershed geologies throughout the Hudson Bay region. The weathering of
organic-rich soils throughout the extensive Nelson River drainage basin
would contribute to higher riverine DIC and TA compared to rivers further
north with drainage basins in the relatively organic-poor Arctic tundra.
Furthermore, weathering processes become more active in subarctic, or even
temperate, regions of the Hudson Bay drainage area, yielding higher TA inputs
from those regions than from polar regions. This regional dependence on
riverine composition is also observed in the <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O signatures,
both across the basin and within a single river catchment, with the
southwestern rivers having distinctly less depleted <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O
signatures than the rivers further north (Table 1; see also Granskog et al.,
2011, and Smith et al., 2015). Nevertheless, the TA end-member calculated
here is substantially higher than the prior estimate for the Nelson River
(1022 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Azetsu-Scott et al., 2014), and we think this
discrepancy is due to sampling depth within this highly stratified system,
as well as to the fact that our samples extended further up the estuary,
into fresher waters.</p>
      <p>Data obtained via rosette sampling in southwestern Hudson Bay (Fig. 4, red
squares) yield a riverine TA end-member of
710 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and the uncertainty on this value places it in the
same range as the end-member calculated for the rest of Hudson Bay.
According to the CTD data, samples from southwestern Hudson Bay were
collected between 1.4 and 10.3 m depth, with the former being considered
“surface” samples. In contrast, samples collected from the surface in the
inner NRE using the small barge yield an end-member of 1870 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Given the close proximity of these inner NRE stations to others
in southwestern Hudson Bay, the discrepancy in end-members indicates that
surface samples collected via the rosette captured a different water mass
than those collected via the small barge. This is illustrated further using
a cross section of salinity in the NRE (Fig. 5).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Variations in TA <bold>(a)</bold>, DIC <bold>(b)</bold>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula>
<bold>(c)</bold> with in situ density anomaly (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, observed density – 1000 kg m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> along the northwest–northeast (A–B)
coastal transect (inset map of
transect is shown in lower panel). Dashed ellipses surround data within the
NRE, while solid ellipses surround data with <inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.05 (located along southern coastline). Vertical arrows illustrate
differences in DIC and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> between waters in western
Hudson Bay (blue–purple points) and eastern Hudson Bay (red–yellow points).
Note that <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> was not sampled during the latter part
of the cruise (i.e., along the southern coast). <bold>(d)</bold> Cross section of <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> along the coastal transect with isopycnals of in situ
density anomaly (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, kg m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. <bold>(e)</bold> Cross section of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> with solid line representing the aragonite saturation horizon
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/4659/2016/bg-13-4659-2016-f06.png"/>

        </fig>

      <p>Salinity across the NRE, as measured in situ by the CTD attached to the
rosette system, and as measured from discrete surface bottle samples
collected either from the barge or using a bucket dropped from the bow, is
shown in Fig. 5. At stations 705a, b, and c, salinity samples collected from
surface waters via bucket have considerably lower salinities than any waters
measured by the CTD. Furthermore, according to the CTD pressure data,
surface Niskin bottles from stations 705a, b, and c were closed at 1.6, 1.6
and 1.4 m respectively (Fig. 5, black X's), but the salinities measured in
these Niskin bottles correspond to the CTD salinities observed at depths of
2.5, 3.6, and 7.1 m, respectively (Fig. 5, vertical black arrows), indicating
that the Niskin bottles contained some deeper waters entrained into the
surface by the upward-moving rosette. This highlights the importance of
taking bottle salinity samples from Niskins in parallel with parameters such
as DIC and TA, particularly in highly stratified waters. Here, all DIC and
TA samples collected in southwestern Hudson Bay are accompanied by a
high-precision salinity sample taken from the same Niskin bottle.</p>
      <p>At stations B6, B8, and B12 (Fig. 5), salinities measured using the 3 L
Niskin bottles (deployed to 1 m depth from the small barge) are very low and
show an increasing salinity with distance away from the Nelson River mouth
that is consistent with the bucket samples collected at stations 705a, b, and
c. Clearly, the samples collected from the small boats (barge and Zodiac)
captured low-salinity waters very near the surface, while the “surface”
rosette bottles captured water from a deeper layer with considerably higher
salinities. Assuming the low-salinity layer represents the Nelson River
plume, this water is only accurately captured using the samples taken via
small boats, which explains why samples taken via barge in the inner NRE
have a markedly different TA vs. salinity relationship from samples taken
via rosette throughout the remainder of Hudson Bay (Fig. 4). Additionally,
at station 705c (Fig. 5), the bucket sample near the surface does not appear
to have captured the low-salinity river plume, demonstrating the extent to
which river inputs are constrained to the coastline during cyclonic
transport around the bay (Fig. 1). Large CTD salinity gradients in the upper
2 m were observed at other stations along the southern coast, suggesting
that data from the surface Niskin bottle at these stations may also not
fully reflect the true “surface water” properties.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Coastal transect</title>
      <p>Hudson Bay waters undergo significant compositional changes during their
cyclonic transit around the basin (Granskog et al., 2009; Mundy et al.,
2010). Here, we focus specifically on changes in the carbonate system along
a coastal transect that follows the general counterclockwise circulation
pattern from northwestern Hudson Bay to the northeast (Fig. 6, transect A–B).
For stations within this transect, TA, DIC, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula>
are plotted against in situ density anomaly (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, observed
density <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1000 kg m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to illustrate deviations at constant density
levels (Fig. 6a–c). For TA (Fig. 6a), there is little variability between
stations along the transect and the vast majority of the data fall along the
river mixing line. There are, however, two notable exceptions: the first
being high-TA deviations at stations within the NRE that we attribute to
dissolution of carbonate minerals, and the second being low-TA deviations in
samples with high sea-ice melt fractions (<inline-formula><mml:math display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>_SIM <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.05),
all of which are measured at or near the surface along the southern coast.</p>
      <p>For along-transect DIC (Fig. 6b), the impacts of both freshwater input and
biological activity are apparent. Similar to TA, positive deviations from a
general river mixing line are observed in the NRE, as are negative
deviations along the southern coast, but a distinct increase in DIC is also
visible along the transect due to a build-up of respiratory DIC in
subsurface waters. The maximum offset between waters along the west coast
(blue–purple points) and the east coast (red–yellow points) is between the
24 and 26 kg m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> horizons, indicating that organic
matter respiration rates are highest at these density levels. The structures
of these density horizons along the coastal transect are shown in Fig. 6d.
The lack of any visible offset in bottom water TA suggests that any products
of anaerobic respiration that may be produced in sediments are not
transported into the water column.</p>
      <p>Unlike TA and DIC, freshwater input appears to play a relatively minor role
in governing variability in the stable carbon isotope signature of DIC
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of Hudson Bay waters (Fig. 6c). This may be due
to the fact that Hudson Bay rivers are very isotopically enriched (average
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.2 ‰, Table 1) compared
to other coastal regions (North Sea <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>16 ‰; Burt et al., 2016) and thus are much closer to
typical seawater values (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0–2 ‰).
Biogenic soils are highly depleted in <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula>
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 ‰), while carbonate bedrock has a
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> near 0 ‰ (Spiker, 1980). Given
that the majority of Hudson Bay rivers have rather low DOC (Mundy et al.,
2010) and that much of the bedrock surrounding the bay is carbonate-rich
(Ross et al., 2011), it is unsurprising that Hudson Bay rivers are
isotopically enriched compared to other regions. However, <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> was not sampled along the southern coast; thus, the
Churchill, Nelson, and Hayes rivers, which are likely more depleted in
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula>, are not included in Table 1 and are not well
represented in Fig. 6c and d.</p>
      <p>Conversely, the <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> distributions in Fig. 6c do
highlight the impact of biological activity along the coastal transect.
Waters become isotopically lighter during their transit around the basin,
because respiration of organic matter releases isotopically light DIC into
the water column. In accordance with Fig. 6b, relative changes between
waters along the western shore (blue–purple points) and eastern shore
(red–yellow points) are greatest in intermediate waters. In the North Sea,
Burt et al. (2016) showed that a respiratory DIC increase of 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> could be roughly equated to a 0.012 ‰ decrease
in <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula>. Taking this ratio, and assuming that waters
are transported along lines of constant density, changes in <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> at intermediate depths (between <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 25 and 50 m,
at <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 25 kg m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; see Fig. 6c and d) between western
and eastern waters equate to an addition of approximately 110 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> DIC. Observed increases in DIC at the same density level (Fig. 6b)
are approximately 90 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which is comparable given the
rough nature of this calculation. In deeper waters (between <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 40 and 100 m, at <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 26 kg m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; see Fig. 6d), both observed
DIC increases (shown in Fig. 6b) and increases based on differences in
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> (shown in Fig. 6c) equate to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 70 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. It is important to note that the ratio taken from Burt
et al. (2016) assumes that all respired organic matter is of marine origin,
and although the <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> derived from respired terrestrial
organic matter may have a similar isotopic signature to that of
marine-derived material, it is not clear how a significant fraction of
terrestrial material in the organic matter pool would affect this
first-order calculation. However, in the coastal marine system, the organic
matter turnover (i.e., cycles of production and respiration) is generally
rapid, and thus any terrestrial signature within the organic matter pool
will quickly become difficult to detect.</p>
      <p>The effects of biological activity, sea-ice melt, and variable riverine
input on the carbonate system of Hudson Bay are well summarized in the
coastal transect of aragonite saturation state (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> shown in
Fig. 6e. In surface waters, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is high in the northwest but
decreases along the southern coast due to the dilution of both TA and DIC by
freshwater input. In the NRE, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> remains high despite low
salinities (see Fig. 2a, d) because of carbonate dissolution either in the
drainage basin (as visible in the high alkalinity of the Nelson River) or
in the sediments in the estuary (Fig. 4). Surface waters near James Bay show
minima in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, likely due to the strong sea-ice melt signal in
these waters, as well as large inflows of low-alkalinity river waters (see
Fig. 2). Along the eastern shore, surface water <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is
comparable to (i.e., only slightly lower than) values along the west coast.
This is likely due to the fact that the sea-ice meltwaters, which dilute TA
and DIC to a much greater degree than river input, have yet to be
transported to these stations. In September 2005, surface water <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> along the southern coast was higher than observed here, while
further downstream along the eastern coast, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was lower than
observed here (Azetsu-Scott et al., 2014). This may simply reflect the
transport of low-<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> sea-ice meltwaters from the southern
coast in July to the eastern shore by September. In accordance with this,
Granskog et al. (2009) noted that in October 2005, virtually no sea-ice melt
was observed along the southern shore, further suggesting that these waters
had been transported northeast by the coastal current.</p>
      <p>Focusing on subsurface waters along the transect, the saturation horizon
shoals significantly from 60–70 m along the west coast to 30–40 m along the
east coast. Furthermore, deep waters along the west coast are only slightly
undersaturated, while deep waters along the east coast are heavily
undersaturated. These patterns likely reflect the build-up of respiratory
DIC in deep waters during transit around Hudson Bay, as aerobic respiration
releases DIC while consuming TA, thus causing a relatively strong decrease
in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. Deep waters along the eastern shore are likely older
than waters along the western shore, allowing the products of aerobic
respiration to build up over time. Exchange with open ocean waters is
limited by the shallow sills at the mouth of Hudson Bay, and very low
saturation states are observed at deeper stations in the central Bay, as
well as in the coastal transect (Fig. 6e).</p>
      <p>Subsurface <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, both along the coastal transect (Fig. 6e) and
in a cross-basin section (not shown), is very similar to the 2005
distributions shown by Azetsu-Scott et al. (2014), suggesting that the
acidification state of Hudson Bay had not changed discernibly between 2005
and 2010. However, with only two such datasets taken at slightly different
times of the year, more information is required to make conclusive
statements regarding acidification rates in this region.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p>This work contributes insight into important carbon cycling processes in a
region of the Arctic where biogeochemical data are sparse. The Hudson Bay is
home to a vast number of ecologically important species; thus, an improved
understanding of the key processes affecting the carbonate system, and
thereby the ecosystem, in the bay is crucial. Surface distributions reveal
the importance of variable freshwater inputs from runoff and sea-ice melt in
altering the carbonate system, especially in the southern part of Hudson
Bay. Rivers draining into Hudson Bay have highly variable DIC and TA, a
highly enriched <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>DIC</mml:mtext></mml:msub></mml:math></inline-formula> signature compared to other
regions, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O signatures that show a strong regional
dependence. Given these results, we suggest that future studies in Hudson
Bay undergo extensive sampling that is dedicated to making robust estimates
of multiple, regionally defined riverine <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn>18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O end-members. This
study also shows that the deep Hudson Bay (a) is primarily filled with waters
of Pacific origin from the Canadian Arctic Archipelago and (b) thus has
limited interaction with Atlantic waters in the deep Hudson Strait, which
supports the preliminary findings of Jones et al. (2003). Within Hudson Bay,
the salinity vs. TA relationship indicates mixing between the Pacific waters
and river waters with relatively low TA, compared to rivers at lower
latitudes. Negative deviations from the mixing line are due to dilution from
sea-ice melt, whereas positive deviations in the Nelson River estuary point
to carbonate mineral dissolution. Direct sampling of river DIC and TA
throughout the bay, as well as detailed surface water sampling (i.e., from
multiple platforms) in highly stratified estuarine waters, is needed to
better understand exactly how river inputs alter the carbonate system
parameters of Hudson Bay. This is especially important given that river
input into Hudson Bay is likely changing significantly due to climate change
and, perhaps more importantly, continued hydroelectric development in the
region. Finally, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in deep waters show no discernable change
from 2005 levels, and slight changes in surface water <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ω</mml:mi><mml:mtext>Ar</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> can
be attributed to seasonal variability.</p>
</sec>
<sec id="Ch1.S6">
  <title>Data availability</title>
      <p>The dataset is currently being prepared for submission to the Carbon Dioxide
Information Analysis Center (CDIAC). The full dataset is also available via
email to the corresponding author (William J. Burt). Furthermore, the data
has been made available to the ArcticNet community, as is required by the
funding agency.</p>
</sec>

      
      </body>
    <back><notes notes-type="authorcontribution">

      <p>William J. Burt – primary data analysis, primary writer of
manuscript. Helmuth Thomas – assistance in data analysis, writing, and editing.
Lisa A. Miller – collection and quality control of IOS data, assistance in data
analysis, writing, and editing. Mats A. Granskog, Tim N. Papakyriakou, and Leah Pengelly – manuscript preparation, writing, and editorial assistance.</p>
  </notes><ack><title>Acknowledgements</title><p>Thank you to the ArcticNet community for support and helpful feedback. Also, thanks to
Conrad Koziol for collecting DIC and TA samples and to Marty Davelaar for sample analyses, as well as the captain, crew,
and ArcticNet scientists abroad the CCGS <italic>Amundsen</italic>. Finally, thank you to L. W. Cooper and the second anonymous reviewer for
thoughtful suggestions, which led to significant improvements in the revised manuscript. Mats A. Granskog was supported
by the Centre for Ice, Climate and Ecosystems at the Norwegian Polar Institute and the Fram Centre Ocean Acidification Flagship
research program funded by the Ministry of Climate and Environment of Norway. This research was supported by grants from NSERC
and ArcticNet, as well as by Fisheries and Oceans Canada. The majority of figures were produced using Ocean Data View.
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: J. Middelburg<?xmltex \hack{\newline}?>
Reviewed by: L. W. Cooper and one anonymous referee</p></ack><ref-list>
    <title>References</title>

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  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Inorganic carbon cycling and biogeochemical processes in an Arctic inland
sea (Hudson Bay)</article-title-html>
<abstract-html><p class="p">The distributions of carbonate system parameters in Hudson Bay,
which not only receives nearly one-third of Canada's river discharge but
is also subject to annual cycles of sea-ice formation and melt,
indicate that the timing and magnitude of freshwater inputs play an
important role in carbon biogeochemistry and acidification in this unique
Arctic ecosystem. This study uses basin-wide measurements of dissolved
inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope
tracers (<i>δ</i><sup>18</sup>O and <i>δ</i><sup>13</sup>C<sub>DIC</sub>), to provide a
detailed assessment of carbon cycling processes within the bay. Surface
distributions of carbonate parameters reveal the particular importance of
freshwater inputs in the southern portion of the bay. Based on TA, we
surmise that the deep waters in the Hudson Bay are largely of Pacific
origin. Riverine TA end-members vary significantly both regionally and with
small changes in near-surface depths, highlighting the importance of careful
surface water sampling in highly stratified waters. In an along-shore
transect, large increases in subsurface DIC are accompanied by equivalent
decreases in <i>δ</i><sup>13</sup>C<sub>DIC</sub> with no discernable change in TA,
indicating a respiratory DIC production on the order of 100 µmol kg<sup>−1</sup> DIC during deep water circulation around the bay.</p></abstract-html>
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Prinsenberg, S. J.: Ice-cover and ice-ridge contributions to the freshwater
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Ross, M., Lajeunesse, P., and Kosar, K. G. A.: The subglacial record of
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Rysgaard, S., Bendtsen, J., Delille, B., Dieckmann, G. S., Glud, R. N.,
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J.-L.: Sea ice contribution to the air-sea CO<sub>2</sub> exchange in the Arctic and
Southern Oceans, Tellus, 63B, 823–30,
<a href="http://dx.doi.org/10.1111/j.1600-0889.2011.00571.x" target="_blank">doi:10.1111/j.1600-0889.2011.00571.x</a>, 2011.
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Saucier, F. J., Senneville, S., Prinsenberg, S., Roy, F., Smith, G., Gachon,
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Hudson Bay, Foxe Basin and Hudson Strait, Canada, Clim. Dynam., 23, 303–326,
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Arctic Archipelago to the North Atlantic, Cont. Shelf Res., 31, 806–816,
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</mixed-citation></ref-html>
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