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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-13-6305-2016</article-id><title-group><article-title>Quantifying soil carbon accumulation in Alaskan terrestrial ecosystems
during the last 15 000 years</article-title>
      </title-group><?xmltex \runningtitle{Quantifying soil carbon accumulation in Alaskan terrestrial ecosystems}?><?xmltex \runningauthor{S.~Wang et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Wang</surname><given-names>Sirui</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2204-4990</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Zhuang</surname><given-names>Qianlai</given-names></name>
          <email>qzhuang@purdue.edu</email>
        <ext-link>https://orcid.org/0000-0002-4536-9851</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Yu</surname><given-names>Zicheng</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2358-2712</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Earth, Atmospheric, and Planetary Sciences, Purdue
University, West Lafayette, Indiana 47907, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Agronomy, Purdue University, West Lafayette, Indiana 47907, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Earth and Environmental Sciences, Lehigh
University, Bethlehem, Pennsylvania 18015, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Qianlai Zhuang (qzhuang@purdue.edu)</corresp></author-notes><pub-date><day>25</day><month>November</month><year>2016</year></pub-date>
      
      <volume>13</volume>
      <issue>22</issue>
      <fpage>6305</fpage><lpage>6319</lpage>
      <history>
        <date date-type="received"><day>7</day><month>July</month><year>2016</year></date>
           <date date-type="rev-request"><day>14</day><month>July</month><year>2016</year></date>
           <date date-type="rev-recd"><day>10</day><month>November</month><year>2016</year></date>
           <date date-type="accepted"><day>10</day><month>November</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016.html">This article is available from https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016.pdf</self-uri>


      <abstract>
    <p>Northern high latitudes contain large amounts of soil organic carbon (SOC),
of which Alaskan terrestrial ecosystems account for a substantial proportion.
In this study, the SOC accumulation in Alaskan terrestrial ecosystems over
the last 15 000 years was simulated using a process-based biogeochemistry
model for both peatland and non-peatland ecosystems. Comparable with the
previous estimates of 25–70 Pg C in peatland and 13–22 Pg C in
non-peatland soils within 1 m depth in Alaska using peat-core data, our
model estimated a total SOC of 36–63 Pg C at present, including
27–48 Pg C in peatland soils and 9–15 Pg C in non-peatland soils.
Current vegetation stored 2.5–3.7 Pg C in Alaska, with 0.3–0.6 Pg C in
peatlands and 2.2–3.1 Pg C in non-peatlands. The simulated average rate of
peat C accumulation was 2.3 Tg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, with a peak value of
5.1 Tg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> during the Holocene Thermal Maximum (HTM) in the early
Holocene, 4-fold higher than the average rate of 1.4 Tg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> over
the rest of the Holocene. The SOC accumulation slowed down, or even ceased,
during the neoglacial climate cooling after the mid-Holocene, but increased
again in the 20th century. The model-estimated peat depths ranged from 1.1 to
2.7 m, similar to the field-based estimate of 2.29 m for the region. We
found that the changes in vegetation and their distributions were the main
factors in determining the spatial variations of SOC accumulation during
different time periods. Warmer summer temperature and stronger radiation
seasonality, along with higher precipitation in the HTM and the 20th century,
might have resulted in the extensive peatland expansion and carbon
accumulation.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>The P-TEM (Peatland-Terrestrial Ecosystem Model) framework includes
a soil thermal module (STM), a hydrologic module (HM), a carbon/nitrogen
dynamic model (CNDM), and a methane dynamics module (MDM) (Wang et al.,
2016).</p></caption>
      <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f01.png"/>

    </fig>

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Global surface air temperature has been increasing since the middle of the
19th century (Jones and Mogberg, 2003; Manabe and Wetherald, 1980, 1986).
Since 1970, the warming trend has accelerated at a rate of
0.35<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> decade<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in northern high latitudes (Euskirchen et al.,
2007; McGuire et al., 2009). It is predicted that the warming will continue
in the next 100 years (Juday, 2005; Intergovernmental Panel on Climate Change
(IPCC), 2013, 2014). The land surface in northern high latitudes
(<inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 45<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N) occupies 22 % of the global surface and stores over
40 % of the global soil organic carbon (SOC) (McGuire et al., 1995;
Melillo et al., 1995; McGuire and Hobbie, 1997). Specifically, the northern
high latitudes were estimated to store 200–600 Pg C (1 Pg C <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn>15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> g C) in peatland soils depending on the depth considered
(Gorham, 1990, 1991; Yu, 2012), 750 Pg C in non-peatland soils (within
3 m) (Schuur et al., 2008; Tarnocai et al., 2009; Hugelius et al., 2014),
and an additional 400 Pg C in frozen loess deposits of Siberia (Zimov et
al., 2006). Peatland area is around 40 million hectares in Alaska compared
with total 350 million hectares in northern high latitudes (Kivinen and
Pakarinen, 1981). Alaskan peatlands account for the most peatland area in the
USA and cover at least 8 % of the total land area (Bridgham et al.,
2006). To date, the regional soil C and its responses to the climate change
are still with large uncertainties (McGuire et al., 2009; Loisel et al.,
2014).</p>
      <p>The warming climate could increase C input to soils as litters by stimulating
plant net primary productivity (NPP) (Loisel et al., 2012). However, it can
also decrease the SOC by increasing soil respiration (Yu et al., 2009).
Warming can also draw down the water table in peatlands by increasing
evapotranspiration, resulting in higher decomposition as the aerobic
respiration has a higher rate than anaerobic respiration in general (Hobbie
et al., 2000). SOC accumulates where the rate of soil C input is higher than
decomposition. The variation of climate may switch the role of soils between
a C sink and a C source (Davidson and Janssens, 2006; Davidson et al., 2000;
Jobbágy and Jackson, 2000). Unfortunately, due to the data gaps of field
measurement and uncertainties in estimating regional C stock (Yu, 2012), with
limited understanding of both peatlands and non-peatlands and their responses
to climate change, there is no consensus on the sink and source activities of
these ecosystems (Frolking et al., 2011; Belyea, 2009; McGuire et al., 2009).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Description of sites and variables used for parameterizing the core
carbon and nitrogen module (CNDM).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="142.26378pt"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="119.501575pt"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="128.037402pt"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Site<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">Vegetation</oasis:entry>  
         <oasis:entry colname="col3">Observed variables for CNDM <?xmltex \hack{\hfill\break}?>parameterization</oasis:entry>  
         <oasis:entry colname="col4">References</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">APEXCON</oasis:entry>  
         <oasis:entry colname="col2">Moderately rich open fen with sedges (<italic>Carex</italic> sp.), spiked rushes (<italic>Eleocharis </italic>sp.), <italic>Sphagnum</italic> spp., and brown mosses (e.g., <italic>Drepanocladus aduncus</italic>)</oasis:entry>  
         <oasis:entry colname="col3">Mean annual aboveground <?xmltex \hack{\hfill\break}?>NPP in 2009 <?xmltex \hack{\hfill\break}?>Mean annual belowground <?xmltex \hack{\hfill\break}?>NPP in 2009 <?xmltex \hack{\hfill\break}?>Aboveground biomass in <?xmltex \hack{\hfill\break}?>2009</oasis:entry>  
         <oasis:entry colname="col4">Chivers et al. (2009), <?xmltex \hack{\hfill\break}?>Turetsky et al. (2008), <?xmltex \hack{\hfill\break}?>Kane et al. (2010), <?xmltex \hack{\hfill\break}?>Churchill et al. (2011)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">APEXPER</oasis:entry>  
         <oasis:entry colname="col2">Peat plateau bog with black spruce (<italic>Picea mariana</italic>), <italic>Sphagnum</italic> spp., and feather mosses</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> The Alaskan Peatland Experiment (APEX) site is adjacent to the Bonanza
Creek Experimental Forest (BCEF) site, approximately 35 km southwest of
Fairbanks, AK. The area is classified as continental boreal climate with a
mean annual temperature of <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn>2.9</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and annual precipitation of 269 mm, of which 30 % is snow (Hinzman et al., 2006).</p></table-wrap-foot></table-wrap>

      <p>Both observation and model simulation studies have been applied to understand
the long-term peat C accumulation in northern high latitudes. Most field
estimations are based on series of peat-core samples (Turunen et al., 2002;
Roulet et al., 2007; Yu et al., 2009; Tarnocai et al., 2009). However, those
core analyses may not be adequate for estimating the regional C accumulation
due to their limited spatial coverage. To date, a number of model simulations
have also been carried out. For instance, Frolking et al. (2010) developed a
peatland model considering the effects of plant community, hydrological
dynamics and peat properties on SOC accumulation. The simulated results were
compared with peat-core data. They further analyzed the contributions of
different plant functional types (PFTs) to the peat C accumulation. However,
this 1-D model has not been evaluated with respect to soil moisture,
water-table depth, methane fluxes, and carbon and nitrogen fluxes and has not
been used in large spatial-scale simulations by considering other
environmental factors (e.g., temperature, vapor pressure, and radiation). In
contrast, Spahni et al. (2013) used a dynamic global vegetation and land
surface process model (LPX), based on LPJ (Sitch et al., 2003), imbedded with
a peatland module, which considered the nitrogen feedback on plant
productivity (Xu-Ri and Prentice, 2008) and plant biogeography, to simulate
the SOC accumulation rates of northern peatlands. However, climatic effects
on SOC were not fully explained, presumably due to its inadequate
representation of ecosystem processes (Stocker et al., 2011, 2014; Kleinen et
al., 2012). The Terrestrial Ecosystem Model (TEM) has been applied to study C
and nitrogen dynamics in the Arctic (Zhuang et al., 2001, 2002, 2003, 2015;
He et al., 2014). However, the model has not been calibrated and evaluated
with peat-core C data, and has not been applied to investigate the regional
peatland C dynamics. Building upon these efforts, recently we fully evaluated
the peatland version of TEM (P-TEM) including modules of hydrology (HM), soil
thermal (STM), C and nitrogen dynamics (CNDM) for both upland and peatland
ecosystems (Wang et al., 2016).</p>
      <p>Here we used the peatland-core data for various peatland ecosystems to
parameterize and test P-TEM (Fig. 1). The model was then used to quantify
soil C accumulation of both peatland and non-peatland ecosystems across the
Alaskan landscape since the last deglaciation. This study is among the first
to examine the peatland and non-peatland C dynamics and their distributions
and peat depths using core data at regional scales.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Overview</title>
      <p>To conduct regional simulations of carbon accumulation for both uplands and
peatlands, we first parameterized the P-TEM for representative ecosystems in
Alaska. Second, we organized the regional vegetation and peatland
distribution data, spatial basal age data for all peatland grid cells based
on site-level soil core data, and climate data for each period during the
Holocene. Finally, we conducted the regional simulations and sensitivity
analysis.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Model description</title>
      <p>In P-TEM (Wang et al., 2016), peatland soil organic C (SOC) accumulation is
determined by the difference between NPP and aerobic and anaerobic
decomposition. Peatlands accumulate C where NPP is greater than
decomposition, resulting in positive net ecosystem production (NEP):
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mtext>NEP</mml:mtext><mml:mo>=</mml:mo><mml:mtext>NPP</mml:mtext><mml:mo>-</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>H</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:msub><mml:mtext>CH</mml:mtext><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>CWM</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>CM</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>COM</mml:mtext></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          P-TEM was developed based on the Terrestrial Ecosystem Model (TEM) at a
monthly step (Zhuang et al., 2003, 2015). It explicitly considers the process
of aerobic decomposition (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>H</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> related to the variability of
water-table depth; net methane emission after methane oxidation
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:msub><mml:mtext>CH</mml:mtext><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>; CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emission due to methane oxidation
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>CWM</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (Zhuang et al., 2015); CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> release accompanied by the
methanogenesis (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>CM</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (Tang et al., 2010; Conrad, 1999); and
CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> release from other anaerobic processes (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>COM</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, e.g.,
fermentation, terminal electron acceptor (TEA) reduction) (Keller and
Bridgham, 2007; Keller and Takagi, 2013). For upland soils, we only
considered the heterotrophic respiration under aerobic conditions (Raich et
al., 1991). For a detailed model description, see Wang et al. (2016).</p>
      <p>We modeled peatland soils as a two-layer system for a hydrological module
(HM) while keeping the three-layer system for upland soils (Zhuang et al.,
2002). The soil layers above the lowest water-table position are divided into
(1) a moss (or litter) organic layer (0–10 cm) and (2) a humic organic
layer (10–30 cm) (Wang et al., 2016). Based on the total amount of water
content within those two unsaturated layers, the actual water-table depth
(WTD) is estimated. The water content at each 1 cm above the water table can
then be determined after solving the water balance equations (Zhuang et al.,
2004).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Carbon pools and fluxes used for calibration of CMDM.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right" colsep="1"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col3" align="center"><italic>Sphagnum</italic> open fen </oasis:entry>  
         <oasis:entry rowsep="1" namest="col4" nameend="col5" align="center"><italic>Sphagnum</italic>–black spruce bog </oasis:entry>  
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Annual carbon fluxes or pools<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">Observation</oasis:entry>  
         <oasis:entry colname="col3">Simulation</oasis:entry>  
         <oasis:entry colname="col4">Observation</oasis:entry>  
         <oasis:entry colname="col5">Simulation</oasis:entry>  
         <oasis:entry colname="col6">References</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">NPP</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mrow><mml:mn>445</mml:mn><mml:mo>±</mml:mo><mml:mn>260</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">410</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mrow><mml:mn>433</mml:mn><mml:mo>±</mml:mo><mml:mn>107</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">390</oasis:entry>  
         <oasis:entry colname="col6">Turetsky et al. (2008),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Aboveground vegetation carbon</oasis:entry>  
         <oasis:entry colname="col2">149–287</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">423</oasis:entry>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6">Churchill (2011),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Belowground vegetation carbon</oasis:entry>  
         <oasis:entry colname="col2">347–669</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">987</oasis:entry>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6">Saarinen (1996),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Total vegetation carbon density</oasis:entry>  
         <oasis:entry colname="col2">496–856</oasis:entry>  
         <oasis:entry colname="col3">800</oasis:entry>  
         <oasis:entry colname="col4">1410</oasis:entry>  
         <oasis:entry colname="col5">1300</oasis:entry>  
         <oasis:entry colname="col6">Moore et al. (2002),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Litter fall carbon flux</oasis:entry>  
         <oasis:entry colname="col2">300</oasis:entry>  
         <oasis:entry colname="col3">333</oasis:entry>  
         <oasis:entry colname="col4">300</oasis:entry>  
         <oasis:entry colname="col5">290</oasis:entry>  
         <oasis:entry colname="col6">Zhuang et al. (2002),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Methane emission flux</oasis:entry>  
         <oasis:entry colname="col2">19.5</oasis:entry>  
         <oasis:entry colname="col3">19.2</oasis:entry>  
         <oasis:entry colname="col4">9.7</oasis:entry>  
         <oasis:entry colname="col5">12.8</oasis:entry>  
         <oasis:entry colname="col6">Tarnocai et al. (2009),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6">Kuhry and Vitt (1996)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> Units for annual net primary production (NPP) and litter
fall carbon are g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Units for vegetation carbon
density are g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Units for methane emissions are
g C–CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The simulated total annual methane
fluxes were compared with the observations at APEXCON in 2005 and SPRUCE in
2012. A ratio of 0.47 was used to convert vegetation biomass to carbon
(Raich, 1991).</p></table-wrap-foot></table-wrap>

      <p>In the STM module, the soil vertical profile is divided into four layers:
(1) snowpack in winter, (2) a moss (or litter) organic layer, and (3) upper
and (4) lower humic organic soil (Wang et al., 2016). Each of these soil
layers is characterized by a distinct soil thermal conductivity and heat
capacity. We used the observed water content to drive the STM (Zhuang et al.,
2001).</p>
      <p>The methane dynamics module (MDM) (Zhuang et al., 2004) considers the
processes of methanogenesis, methanotrophy, and the transportation pathways,
including (1) diffusion through the soil profile, (2) plant-aided
transportation and (3) ebullition. The soil temperatures calculated from STM,
after interpolation into 1 cm sub-layers, are input to the MDM. The
water-table depth and soil water content in the unsaturated zone for methane
production and emission are obtained from HM, and NPP is calculated from the
CNDM. Soil-water pH is prescribed from observed data and the root
distribution determines the redox potential (Zhuang et al., 2004).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Model parameterization</title>
      <p>We have parameterized the key parameters of the individual modules, including
HM, STM, and MDM in Wang et al. (2016). The parameters in CNDM for upland
soils and vegetation have been optimized in the previous studies (Zhuang et
al 2002, 2003; Tang and Zhuang, 2008). Here we parameterized P-TEM for
peatland ecosystems using data from a moderately rich <italic>Sphagnum</italic> spp.
open fen (APEXCON) and a <italic>Sphagnum–</italic>black spruce (<italic>Picea mariana</italic>) bog (APEXPER) (Table 1). Both are located in the Alaskan Peatland
Experiment (APEX) study area, where <italic>Picea mariana</italic> is the only tree
species above breast height in APEXPER. Three water-table position
manipulations were established in APEX, including control, lowered, and
raised water-table plots (Chivers et al., 2009; Turetsky et al., 2008; Kane
et al., 2010; Churchill et al., 2011). There were also several internal
collapse scars that formed with thaw of surface permafrost, including non,
old, and new collapse plots. APEXCON represents the control manipulation and
APEXPER represents the non-collapse plot. The annual NPP and aboveground
biomass at both sites were measured in 2009. There were no belowground
observations at APEX, however, at a Canadian peatland, Mer Bleue, which
includes <italic>Sphagnum</italic> spp. dominated bog (dominated by shrubs and
<italic>Sphagnum</italic>) and pool fen (dominated by sedges and herbs and
<italic>Sphagnum</italic>). The belowground biomass was also observed at Suurisuo
mire complex, southern Finland, a sedge fen site dominated by <italic>Carex rostrate</italic>. We used the ratio (70 %) of belowground biomass to total
biomass from these two study sites to calculate the missing belowground
biomass values at APEXCON and APEXPER (Table 2). We conducted 100 000 Monte
Carlo ensemble simulations to calibrate the model for each site using a
Bayesian approach, and parameter values with the modes in their posterior
distributions were selected (Tang and Zhuang, 2008, 2009).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Alaskan vegetation distribution maps reconstructed from fossil
pollen data during <bold>(a)</bold> 15–11 ka, <bold>(b)</bold> 11–10 ka,
<bold>(c)</bold> 10–9 ka, <bold>(d)</bold> 9 ka–1900 AD, and
<bold>(e)</bold> 1900–2000 AD (He et al., 2014). Symbols represent the basal
age of peat samples (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>102</mml:mn></mml:mrow></mml:math></inline-formula>) in Gorham et al. (2012). Each symbol indicates
one to three peat samples in the map. Peat samples with basal age 9–5 k and
5 k–19th are shown in map <bold>(d)</bold> as there is no change in vegetation
distribution during 9 k–19th. Barren refers to mountain range and large
water body areas that can not be interpolated.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f02.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p>Assignment of biomized fossil pollen data to the vegetation types
in TEM (He et al., 2014).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">TEM upland vegetation</oasis:entry>  
         <oasis:entry colname="col2">TEM peatland vegetation</oasis:entry>  
         <oasis:entry colname="col3">BIOMISE code</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Alpine tundra</oasis:entry>  
         <oasis:entry colname="col2"><italic>Sphagnum </italic>spp. open fen</oasis:entry>  
         <oasis:entry colname="col3">CUSH DRYT PROS</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Moist tundra</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">DWAR SHRU</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Boreal evergreen needleleaf and mixed forest</oasis:entry>  
         <oasis:entry colname="col2"><italic>Sphagnum</italic>–black spruce bog</oasis:entry>  
         <oasis:entry colname="col3">TAIG COCO CLMX COMX</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Boreal deciduous broadleaf forest</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">CLDE</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><caption><p>Relations between peatland basal age and vegetation distribution.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="156.490157pt"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="156.490157pt"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Peatland basal age</oasis:entry>  
         <oasis:entry colname="col2">Vegetation types</oasis:entry>  
         <oasis:entry colname="col3">Location in Alaska</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">15–11 ka</oasis:entry>  
         <oasis:entry colname="col2">alpine tundra</oasis:entry>  
         <oasis:entry colname="col3">southern, northwestern, and southeastern coasts</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">11–10 ka</oasis:entry>  
         <oasis:entry colname="col2">moist tundra <?xmltex \hack{\hfill\break}?>boreal evergreen needleleaf forest <?xmltex \hack{\hfill\break}?>boreal deciduous broadleaf forest</oasis:entry>  
         <oasis:entry colname="col3">southern, northern, and southeastern coasts <?xmltex \hack{\hfill\break}?>eastern central part</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">10–9 ka</oasis:entry>  
         <oasis:entry colname="col2">moist tundra <?xmltex \hack{\hfill\break}?>boreal evergreen needleleaf forest <?xmltex \hack{\hfill\break}?>boreal deciduous broadleaf forest</oasis:entry>  
         <oasis:entry colname="col3">southern and northern coasts <?xmltex \hack{\hfill\break}?>central part</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">9–5 ka</oasis:entry>  
         <oasis:entry colname="col2">moist tundra <?xmltex \hack{\hfill\break}?>boreal evergreen needleleaf forest</oasis:entry>  
         <oasis:entry colname="col3">central part</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">5 ka–1900 AD</oasis:entry>  
         <oasis:entry colname="col2">moist tundra <?xmltex \hack{\hfill\break}?>boreal evergreen needleleaf forest</oasis:entry>  
         <oasis:entry colname="col3">western coast</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS4">
  <title>Regional model input data</title>
      <p>The Alaskan C stock was simulated through the Holocene driven with vegetation
data reconstructed for four time periods, including a time period
encompassing a millennial-scale warming event during the last deglaciation
known as the Bølling–Allerød at 15–11 ka (1 ka <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1000 cal yr
before present), Holocene Thermal Maximum (HTM) during the early Holocene at
11–10 and 10–9 ka, and the mid (9–5 ka) and late Holocene
(5 ka–1900 AD) (He et al., 2014). We used the modern vegetation
distribution for the simulation during the period 1900–2000 AD (Fig. 2). We
assumed that the vegetation distribution remained static within each
corresponding time period. Upland ecosystems were classified into boreal
deciduous broadleaf forest, boreal evergreen needleleaf and mixed forest,
alpine tundra, wet tundra, and barren lands (Table 3). By using the same
vegetation distribution map, we reclassified the upland ecosystems into two
peatland types, including <italic>Sphagnum</italic> spp. poor fens (SP) dominated by
tundra and <italic>Sphagnum</italic> spp.–black spruce (<italic>Picea mariana</italic>)
bog/peatland (SBP) dominated by forest ecosystems (Table 3).</p>
      <p>The upland and peatland ecosystem distribution for each grid cell was
determined using the wetland inundation data extracted from the NASA/GISS
global natural wetland dataset (Matthews and Fung, 1987). The resolution was
resampled to <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mn>0.5</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn>0.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> from <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>. Given the same topography of Alaska during the Holocene, we
assumed that the wetland distribution remained the same throughout the
Holocene. The inundation fraction was assumed to be the same within each grid
through time and the land grids not covered by peatland were treated as
uplands. We calculated the total area of modern Alaskan peatlands to be
302 410 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>, which was within the range from 132 000 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> (Bridgham
et al., 2006) to 596 000 km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> (Kivinen and Pakarinen, 1981). The soil
water pH data were extracted from Carter and Scholes (2000), and the
elevation data were derived from Zhuang et al. (2007).</p>
      <p>Our regional simulations considered the effects of basal ages on carbon
accumulation. To obtain the spatially explicit basal age data for all
peatland grid cells, we first categorized the observed basal ages of peat
samples from Gorham et al. (2012) into different time periods, including
15–11, 11–10, 10–9, and 9 ka–19th (Fig. 2). For each time period, the
areas dominated by different vegetation types were assigned with varying
peatland basal ages. To do that, we examined the association of peat basal
ages and vegetation types from peat-core data. For instance, we found that
peatland initiations during 15–11 ka occurred in the regions that were
dominated by alpine tundra at the southern, northwestern, and southeastern
coasts. We thus assign the different peatland basal ages for the grid cells
according to their vegetation types for each time slice (Table 4).</p>
      <p>Climate data were bias-corrected from ECBilt-CLIO model output (Timm and
Timmermann, 2007) to minimize the difference from CRU data (He et al., 2014).
Climate fields include monthly precipitation, monthly air temperature,
monthly net incoming solar radiation, and monthly vapor pressure at a
resolution of <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mn>2.5</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn>2.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>. We used the same
time-dependent forcing atmospheric carbon dioxide concentration data for
model input as were used in ECBilt-CLIO transient simulations from the Taylor
Dome (Timm and Timmermann, 2007). The historical climate data used for the
simulation through the 20th century were monthly CRU2.0 data (Mitchell et
al., 2004).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5" specific-use="star"><caption><p>Sites used for comparison of carbon accumulation rates between
simulation and observation (Jones and Yu, 2010).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Site name</oasis:entry>  
         <oasis:entry colname="col2">Location</oasis:entry>  
         <oasis:entry colname="col3">Peatland</oasis:entry>  
         <oasis:entry colname="col4">Latitude</oasis:entry>  
         <oasis:entry colname="col5">Longitude</oasis:entry>  
         <oasis:entry colname="col6">Dating</oasis:entry>  
         <oasis:entry colname="col7">No. of</oasis:entry>  
         <oasis:entry colname="col8">Basal age</oasis:entry>  
         <oasis:entry colname="col9">Time-weighted Holocene</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">type</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6">method</oasis:entry>  
         <oasis:entry colname="col7">dates</oasis:entry>  
         <oasis:entry colname="col8">(cal yr BP)</oasis:entry>  
         <oasis:entry colname="col9">accumulation rates</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>  
         <oasis:entry colname="col9">(g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Kenai Gasfield</oasis:entry>  
         <oasis:entry colname="col2">Alaska, USA</oasis:entry>  
         <oasis:entry colname="col3">fen</oasis:entry>  
         <oasis:entry colname="col4">60<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>27<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">151<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>14<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col6">AMS</oasis:entry>  
         <oasis:entry colname="col7">12</oasis:entry>  
         <oasis:entry colname="col8">11 408</oasis:entry>  
         <oasis:entry colname="col9">13.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">No Name Creek</oasis:entry>  
         <oasis:entry colname="col2">Alaska, USA</oasis:entry>  
         <oasis:entry colname="col3">fen</oasis:entry>  
         <oasis:entry colname="col4">60<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>38<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">151<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>04<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col6">AMS</oasis:entry>  
         <oasis:entry colname="col7">11</oasis:entry>  
         <oasis:entry colname="col8">11 526</oasis:entry>  
         <oasis:entry colname="col9">12.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Horsetrail fen</oasis:entry>  
         <oasis:entry colname="col2">Alaska, USA</oasis:entry>  
         <oasis:entry colname="col3">rich fen</oasis:entry>  
         <oasis:entry colname="col4">60<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>25<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">150<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>54<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col6">AMS</oasis:entry>  
         <oasis:entry colname="col7">10</oasis:entry>  
         <oasis:entry colname="col8">13 614</oasis:entry>  
         <oasis:entry colname="col9">10.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Swanson fen</oasis:entry>  
         <oasis:entry colname="col2">Alaska, USA</oasis:entry>  
         <oasis:entry colname="col3">poor fen</oasis:entry>  
         <oasis:entry colname="col4">60<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>47<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">150<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>49<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col6">AMS</oasis:entry>  
         <oasis:entry colname="col7">9</oasis:entry>  
         <oasis:entry colname="col8">14 225</oasis:entry>  
         <oasis:entry colname="col9">5.7</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Simulated paleo-climate and other input data from 15 ka to
2000 AD: <bold>(a)</bold> mean monthly and <bold>(b)</bold> mean annual net incoming
solar radiation (NIRR, W m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(c)</bold> mean monthly and
<bold>(d)</bold> mean annual air temperature (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>), and <bold>(e)</bold> mean
monthly and <bold>(f)</bold> mean annual precipitation (mm) (Timm and Timmermann,
2007; He et al., 2014).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS5">
  <title>Simulations and sensitivity test</title>
      <p>Simulations for pixels located on the Kenai Peninsula from 15 to 5 ka were
first conducted with the parameterized model. The peat-core data from four
peatlands on the Kenai Peninsula, Alaska (Jones and Yu, 2010; Yu et al.,
2010) (Table 5; also see Table 3 in Wang et al., 2016) were used to compare
with the simulations. The observed data include the peat depth, bulk density
of both organic and inorganic matters at 1 cm interval, and age
determinations. The simulated C accumulation rates represent the actual
(“true”) rates at different times in the past. However, the calculated
accumulation rates from peat cores are considered “apparent” accumulation
rates, as peat would continue to decompose since the time of formation until
the present when the measurement was made (Yu, 2012). To facilitate
comparison between simulated and observed accumulation rates, we converted
the simulated “true” accumulation rates to “apparent” rates, following
the approach by Spahni et al. (2013). That is, we summed the annual net C
accumulation over each 500-year interval and deducted the total amount of C
decomposition from that time period, then dividing by 500 years.</p>
      <p>Second, we conducted a transient regional simulation driven with monthly
climatic data (Fig. 3) from 15 ka to 2000 AD. The simulation was conducted
assuming all grid cells were taken up by upland ecosystems to get the upland
soil C spatial distributions during different time periods. We then conducted
the second simulation assuming all grid cells were dominated by peatland
ecosystems following Table 3 to obtain the distributions of peat SOC
accumulation. Finally, we used the inundation fraction map to extract both
uplands and peatlands and estimated the corresponding SOC stocks within each
grid, which were then summed up to represent the Alaskan SOC stock. We also
used the observed mean C content of 46.8 % in peat mass and bulk density
of 166 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 76 kg m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in Alaska (Loisel et al., 2014) to
estimate peat depth distribution from the simulated peat SOC density
(kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p>Third, we conducted a series of extra simulations to further examine how
uncertain climates and vegetation distribution affect our results. We used
the original forcing data as the standard scenario and the warmer (monthly
temperature <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) and cooler (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) as other two scenarios
while keeping the rest of the forcing data unchanged. Similarly, we used the
original forcing data as the standard scenario and the wetter (monthly
precipitation <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>10 mm) and drier (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10 mm) to test the effect from
precipitation. To further study whether vegetation distribution has stronger
effects on SOC accumulation than climate in Alaska, we simply replaced SBP
with SP and replaced the upland forests with tundra at the beginning of
15 ka. We then conducted the simulation under “warmer” and “wetter”
conditions simultaneously as described before while keeping the vegetation
distribution unchanged.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Simulated and observed carbon accumulation rates from 15 to 5 ka in
20-year bins <bold>(a)</bold> and 500-year bins with standard
deviation <bold>(b)</bold> for No Name Creek, Horse Trail Fen, Kenai Gasfield,
and Swanson Fen. Peat-core data were from Jones and Yu (2010).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f04.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>Simulated peatland carbon accumulation rates at site level</title>
      <p>Our paleosimulations showed a large peak of peat C accumulation rates at
11–9 ka during the HTM (Fig. 4). The simulated “true” and “apparent”
rates captured this primary feature in peat-core data at almost all sites
(Jones and Yu, 2010; see Wang et al., 2016, Table 3 for site details). We
simulated an average of the peat SOC “apparent” accumulation rate of
11.4 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from 15 to 5 ka, which was slightly higher
than the observations at four sites (10.45 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The
simulated rate during the HTM was 26.5 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, up to 5
times higher than the rest of the Holocene (5.04 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
This corresponded to the observed average rate of 20 C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
from 11.5 to 8.6 ka, which is 4 times higher than 5 C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
over the rest of the Holocene.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Simulated <bold>(a)</bold> mean vegetation carbon density
(kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) of different vegetation types, <bold>(b)</bold> annual NPP
(g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and <bold>(c)</bold> long-term NPP
(g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Total C (Pg C) stored in Alaskan vegetation for different time
periods.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Vegetation carbon</title>
      <p>Model simulations showed an overall low vegetation C before the HTM
(15–11 ka) (Fig. 5a) parallel to the relatively low annual and long-term
NPP (Fig. 5b and c). The lowest amount of C
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.8 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was stored in <italic>Sphagnum</italic>-dominated
peatland. <italic>Sphagnum</italic>–black spruce peatland also had low vegetation C
density (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Upland vegetation showed a generally
higher C storage, of which boreal evergreen needleleaf forest ranked first
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Highest NPP accompanied by highest vegetation
carbon appeared during the HTM (11–9 ka) (Fig. 5a and b). Lower annual C
uptake along with lower C was found during the mid and late Holocene
(9 ka–19th), where peatland ecosystems exhibited the most obvious drops
(Fig. 5a and b).</p>
      <p>In general, vegetation held about 2 Pg C before the HTM (Fig. 6). Upland
tundra ecosystems accounted for the highest amount of C. During the HTM,
boreal evergreen needleleaf forest reached its peak and had an overwhelming
proportion over total C. Similarly, a peak of total vegetation C appeared at
the same time, averaging around 4.3 Pg C. A large decrease occurred at the
mid-Holocene and a slight decline continued till the late Holocene. We
estimated a total of 2.9 Pg C stored in modern Alaskan vegetation, with
0.4 Pg in peatlands and 2.5 Pg in non-peatlands. The uncertainties during
the model calibration (Table 2) resulted in 0.3–0.6 and 2.2–3.1 Pg C in
peatlands (see Wang et al., 2016, for model parameters) and non-peatland
vegetation (see Tang and Zhuang, 2008, for uncertainty analyses for upland
vegetation), respectively. Our estimation of 2.5–3.7 Pg C stored in the
Alaskan vegetation was lower than the previous estimate of 5 Pg (Balshi et
al., 2007; McGuire et al., 2009), presumably due to the prior ranges of model
parameters used from Tang and Zhuang (2008). Our overestimation of peatland
area may also lead to a reduction of Alaskan non-peatland area.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Average non-peatland (mineral) SOC density (kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
during <bold>(a)</bold> 15–11 ka, <bold>(b)</bold> 11–10 ka,
<bold>(c)</bold> 10–9 ka, <bold>(d)</bold> 9–5 ka, <bold>(e)</bold> 5 ka–1900 AD,
and <bold>(f)</bold> 1900–2000 AD. The period of 9 k–19th in Fig. 2d is
separated into 9–5 k and 5 k–19th.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f07.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p>Peatland area expansion and peat soil C accumulation per 1000 years
(kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> kyr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> during <bold>(a)</bold> 15–11 ka,
<bold>(b)</bold> 11–10 ka, <bold>(c)</bold> 10–9 ka, <bold>(d)</bold> 9–5 ka,
<bold>(e)</bold> 5 ka–1900 AD, and <bold>(f)</bold> 1900–2000 AD. The amount of
C represents the C accumulation as the difference between the peat C amount
in the final year and the first year in each time slice. The period of
9 k–19th in Fig. 2d is separated into 9–5 k and 5 k–19th.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f08.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>Soil carbon</title>
      <p>Carbon storage in Alaskan non-peatland soils varied spatially (Fig. 7). Moist
tundra had the highest SOC density (12–25 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, followed by
deciduous broadleaf forest (8–13 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and evergreen
needleleaf forest (3–8 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> through all time slices between
15 ka and 2000 AD. Dramatic changes in vegetation types have occurred in
Alaska during different periods (Fig. 2). Before the HTM (15–11 ka), the
terrestrial ecosystem was dominated by tundra. The northwestern coast and the
eastern interior were covered by moist tundra. Southwestern Alaska and the
interior south of the Brooks Range were dominated by alpine tundra (Fig. 2a).
The basal ages of peat samples from Gorham et al. (2012) suggested that
peatlands were likely to form from the (alpine) tundra ecosystems, although
patches of boreal deciduous broadleaf forest and boreal evergreen needleleaf
and mixed forest appeared at the north of the Alaska Range. Initially, only
<italic>Sphagnum</italic> open peatland (SP) existed, with less C
(<inline-formula><mml:math display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) sequestrated in the southeastern Brooks Range
in comparison with southwestern and northwestern coastal parts
(<inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 15 kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) (Fig. 8a). Approximately <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>4.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> area was covered by peatlands at the beginning of the HTM
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 11 ka) (Fig. 9). During the HTM (11–9 ka), boreal deciduous
broadleaf and boreal evergreen needleleaf and mixed forests expanded (Fig. 8b
and c). Coastal tundra (moist wet tundra) covered north of the Brooks Range
between 11 and 10 ka, where SP continued its expansion (Fig. 8b).
<italic>Sphagnum</italic>–black spruce forested peatland began forming in the
southwestern coast and eastern interior regions, with a rapid increase in
total peatland area to about <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>13</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> (Fig. 9). At
10–9 ka, boreal deciduous forest expanded to north of the Brooks Range,
making forest the dominant biome in Alaska (Fig. 2c). Prevailing forest
ecosystems indicated a large expansion of peatland, with SBP covering the
interior of Alaska (Fig. 8c). During the mid-Holocene (9–5 ka), the
terrestrial landscape generally resembled present-day ecosystems (Bigelow et
al., 2003). Boreal evergreen needleleaf and mixed forest prevailed in
southern and interior Alaska, with tundra returning to north of the Brooks
Range and western Alaska (Fig. 2d and e). Although SP kept forming towards
the west, some areas dominated by SBP in interior Alaska ceased accumulating
C (Fig. 8d). At 5k–19th, almost all the peatlands have formed, with some
interior regions exhibiting a C loss (Fig. 8e). C accumulation increased
again in the last century, averaging about
20 kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> kyr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 8f). We found that the
distribution of SOC densities of both upland and peatland varied greatly
depending on the vegetation distribution within each time slice, indicating
that vegetation composition might be a major factor controlling regional C
dynamics.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p>Peatland expansion area (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>) in different time
slices.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f09.png"/>

        </fig>

      <p>An average peat SOC “apparent” accumulation rate of
13 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (2.3 Tg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the whole of
Alaska) was estimated from 15 ka to 2000 AD (Fig. 10), lower than
18.6 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> as estimated from peat cores for northern
peatlands (Yu et al., 2010), and slightly higher than the observed rate of
13.2 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from four peatlands in Alaska (Jones and
Yu, 2010). A simulated peak occurred during the HTM with the rate
29.1 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (5.1 Tg C yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which was
slightly higher than the observed 25 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for
northern peatlands and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for Alaska
(Yu et al., 2010). It was almost 4 times higher than the rate
6.9 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (1.4 Tg C yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> over the rest of
the Holocene, which corresponded to the peat-core-based observations of
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The mid and late Holocene showed
much slower C accumulation at a rate of approximately 5-fold lower than
during the HTM. This corresponded to the observation of a 6-fold decrease in
the rate of new peatland formation after 8.6 ka (Jones and Yu, 2010). The C
accumulation rates increased abruptly to 39.2 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
during the last century, within the field-measured average apparent rate
range of 20–50 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> over the last 2000 years (Yu et
al., 2010).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><caption><p>Bars of peatland mean C accumulation rates from 15 ka to 2000 AD
for <bold>(a)</bold> the weighted average of all peatlands,
<bold>(b)</bold> <italic>Sphagnum</italic> open peatlands, and
<bold>(c)</bold> <italic>Sphagnum</italic>–black spruce peatlands.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f10.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><caption><p>Total C stock accumulated from 15 ka to 2000 AD for all peatlands,
<italic>Sphagnum</italic> open peatlands, <italic>Sphagnum</italic>–black spruce peatlands,
and upland soils.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f11.png"/>

        </fig>

      <p>The SOC stock of northern peatlands has been estimated in many studies,
ranging from 210 to 621 Pg (Oechel, 1989; Gorham, 1991; Armentano and
Menges, 1986; Turunen et al., 2002; Yu et al., 2010; see Yu, 2012, for a
review). Assuming Alaskan peatlands were representative of northern peatlands
and using the area of Alaskan peatlands (<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>0.45</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>;
Kivinen and Pakarinen, 1981) divided by the total area of northern peatlands
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn> 4</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>; Maltby and Immirzi, 1993), we estimated a
SOC stock of 23.6–69.9 Pg C for Alaskan peatlands. Our model estimated
27–48 Pg C (23.9 Pg C in SP and 13.5 Pg C in SBP) had been accumulated
from 15 ka to 2000 AD (Fig. 11), due to uncertain parameters (Table 2; see
Wang et al., 2016, for model parameters). The uncertainty can also have
resulted from peat basal age distributions and the estimation of total
peatland area using modern inundation data as discussed above. By
incorporating the observed basal age distribution to determine the expansion
of peatland through time, we estimated that approximately 68 % of Alaskan
peatlands had formed by the end of the HTM, similar to the estimation from
observed basal peat ages that 75 % peatlands had formed by 8.6 ka (Jones
and Yu, 2010).</p>
      <p>The northern circumpolar soils were estimated to cover approximately
<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>18.78</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> (Tarnocai et al., 2009). The non-peatland soil
C stock was estimated to be in the range of 150–191 Pg C for boreal
forests (Apps et al., 1993; Jobbágy and Jackson, 2000) and 60–144 Pg C
for tundra in the 0–100 cm depth (Apps et al., 1993; Gilmanov and Oechel,
1995; Oechel et al., 1993); <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>1.24</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> non-peatland area
was estimated from the total land area of Alaska (<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>1.69</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Therefore, Alaska non-peatland soil contained
17–27 Pg C by using the ratio of Alaskan over northern non-peatland. In
comparison, we modeled 9–15 Pg C (within 1 m depth), depending on the
prior ranges of model parameters from Tang and Zhuang (2008).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><caption><p>Spatial distribution of <bold>(a)</bold> total peat SOC density
(kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(b)</bold> total mineral SOC density
(kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(c)</bold> total peat depth (m), and
<bold>(d)</bold> area-weighted total (peatlands plus non-peatlands) SOC density
(kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in Alaska from 15 ka to 2000 AD.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f12.png"/>

        </fig>

      <p>The simulated modern SOC distribution (Fig. 12c) was largely consistent with
the study of Hugelius et al. (2014) (see Fig. 3 in the paper). The model
captured the SOC density on the northern and southwestern coasts of Alaska,
with most grids <inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 40 kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> on average. Those regions also
showed high SOC density (<inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 75 kg C m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which was also
exhibited in our result. The eastern part and the western coast had the
lowest SOC densities, corresponding to the simulation result that most grids
had SOC values between 20 and 40 kg C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. We estimated an average
peat depth of 1.9 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.8 m considering the uncertainties within dry
bulk densities. It was similar to the observed mean depth of 2.29 m for
Alaskan peatlands (Gorham et al., 1991, 2012). Our estimates (Fig. 12d)
showed a relatively high correlation with the 64 observed peat samples,
especially with higher depths (Fig. 13) (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.45</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The large intercept
of the regression line (101 cm) suggested that the model might have not
performed well in estimating the grids with low peat depths (<inline-formula><mml:math display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 50 cm).
The peat characteristics (e.g., bulk density) from location to location may
differ greatly, even within the same small region. Thus, it is difficult to
capture the observed variations of peat depths, as we used the averaged bulk
density of the whole of Alaska.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Effects of climate on ecosystem carbon accumulation</title>
      <p>The simulated climate by the ECBilt-CLIO model showed that among the six time
periods, the coolest temperature appeared at 15–11 ka, followed by the mid
and late Holocene (5 ka–1900 AD). Those two periods were also generally
dry (Fig. 3f). The former represented colder and drier climates before the
onset of the Holocene and the HTM (Barber and Finney, 2000; Edwards et al.,
2001). The latter represented post-HTM neoglacial cooling, which has caused
permafrost aggradation across northern high latitudes (Oksanen et al., 2001;
Zoltai, 1995).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><caption><p>Field-based estimates and model simulations for peat depths in
Alaska: the observed and simulated data are extracted from the same grids on
the map. The linear regression line (cyan) is compared with the 1 : 1 line. The
linear regression is significant (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>&lt;</mml:mo><mml:mn>0.001</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn>64</mml:mn></mml:mrow></mml:math></inline-formula>) with <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn>0.45</mml:mn></mml:mrow></mml:math></inline-formula>,
slope <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.65, and intercept <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 101.05 cm. The observations
of <inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1000 cm are treated as outliers.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f13.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><caption><p>Temperature and precipitation effects on <bold>(a, b)</bold> annual NPP,
<bold>(c, d)</bold> annual SOC decomposition rate (aerobic plus anaerobic), and
<bold>(e, f)</bold> the annual SOC accumulation rate of Alaska. A 10-year moving
average was applied.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/13/6305/2016/bg-13-6305-2016-f14.jpg"/>

        </fig>

      <p>Despite the relatively large inter-annual NPP variation that resulted from
the annual fluctuations of the climate forcing (Fig. 5b), the long-term NPP,
vegetation C density and storage were highest during the HTM (Fig. 5a and c).
Annual C accumulation rates also reached their peak (Figs. 5–11). The
long-term variation of NPP has a similar pattern of the climate (see Fig. 3
for climate variables), where higher NPP, along with higher vegetation C,
coincided with warmer temperatures and enhanced precipitation during the HTM
compared to other time periods. ECBilt-CLIO simulated a warmest summer and a
prolonged growing season, leading to a stronger seasonality of temperature
during the HTM (Kaufman et al., 2004, 2016), in line with the orbitally
induced maximum summer insolation (Berger and Loutre, 1991; Renssen et al.,
2009). The coincidence between the highest vegetation C uptake and SOC
accumulation rates and the warmest summer and the wetter-than-before
conditions indicated a strong link between those climate variables and C
dynamics in Alaska. Enhanced climate seasonality characterized by warmer
summer, enhanced summer precipitation and possibly earlier snowmelt during
the HTM accelerated the photosynthesis and subsequently increased NPP (Tucker
et al., 2001; Kimball et al., 2004; Linderholm, 2006). As shown in our
sensitivity test, annual NPP was increased by 40 and
20 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> under the warmer and wetter scenarios,
respectively (Fig. 14a, b). Meanwhile, warmer condition could positively
affect the SOC decomposition (Nobrega et al., 2007). However, it could be
offset to a certain extent via the hydrological effect, as higher
precipitation could raise the water-table position, allowing less space for
aerobic heterotrophic respiration. Our sensitivity test results indicated
that warmer and wetter conditions could lead to an increase in decomposition
of up to 35 and 15 g C m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively (Fig. 14c,
d). We did not find a decrease in total heterotrophic respiration throughout
Alaska from the higher precipitation. It was presumably due to a much larger
area of upland soils (<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>1.3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> than peatland soils
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>0.26</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>), as higher precipitation would cause
higher aerobic respiration in the unsaturated zone of upland soils and
consequently stimulate the SOC decomposition. The relatively low NPP and
vegetation C density, along with the lower total soil C stocks, were
consistent with the unfavorable cool and dry climate conditions at 15–11 ka
and during the mid and late Holocene. Statistical analysis indicated that
temperature had the most significant effect on peat SOC accumulation rate,
followed by the seasonality of NIRR (Wang et al., 2016). The seasonality of
temperature, the interaction of temperature and precipitation, and
precipitation alone also showed significance. The strong link between climate
factors and C dynamics may explain the lower SOC accumulation during the
neoglacier cooling period (Marcott et al., 2013; Vitt et al., 2000; Peteet et
al., 1998; Yu et al., 2010). The rapid peat SOC accumulation during the 20th
century under warming and wetter climate may suggest a continuous C sink in
this century, as concluded in Spahni et al. (2013). However, the rising
temperature in the future may have positive effects on heterotrophic
respiration and simultaneously increase evapotranspiration and lower the
water table. This could increase aerobic decomposition and thus switch the
Alaskan peatland from a C sink into a C source. Moreover, the increasing
anthropogenic activities including land use will probably increase drought
and subsequently enhance the risk of fire, releasing carbon to the
atmosphere. The fate of Alaskan SOC stock and the biogeochemical cycling of
the terrestrial ecosystems under future scenarios need further investigation.</p>
</sec>
<sec id="Ch1.S3.SS5">
  <title>Effects of vegetation distribution on ecosystem carbon
accumulation</title>
      <p>Climate variables significantly affect C dynamics within each time slice.
However, different vegetation distributions during various periods led to
clear step changes, suggesting vegetation composition was likely to be
another primary factor (Figs. 6, 7, 8, and 11). As key parameters controlling
C dynamics in the model (e.g., maximum rate of photosynthesis, litter fall C,
maximum rate of monthly NPP) are ecosystem type specific, vegetation
distribution changes may drastically affect regional plant productivity and C
storage. Our sensitivity test indicated that by replacing all vegetation
types with forests, there was a total increase of 36.9 Pg in upland plus
peatland soils. There was also an increase of 48.8 Pg C under warmer and
wetter conditions, suggesting that both climate and vegetation distribution
may have played important roles in carbon accumulation.</p>
      <p>The vegetation changes reconstructed from fossil pollen data during different
time periods followed the general climate history during the last
15 000 years. For instance, the migration of dark boreal forests over
snow-covered tundra during the HTM was probably induced by the warmer and
wetter climate that resulted from the insolation changes (He et al., 2014).
The cooler and drier climate after the mid-Holocene limited the growth of
boreal broadleaf conifers (Prentice et al., 1992), and therefore resulted in
the replacement of broadleaf forest with needleleaf forest and tundra
ecosystems. Since the parameters of our model for individual vegetation type
were static, parameterizing the model using modern site-level observations
might have introduced uncertainty to parameters, which may result in regional
simulation uncertainties. Assuming each parameter as constant (e.g., the
lowest water-table boundary; see Wang et al., 2016, for details) over time
may also weaken the model's response to different climate scenarios.
Furthermore, applying static vegetation maps at millennial scales and using
modern elevation and pH data may simplify the complicated changes in
landscape and terrestrial ecosystems, as vegetation can shift within hundreds
of years (Ager and Brubake, 1985; see He et al., 2014, discussion section).
Relatively coarse spatial resolution (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mn>0.5</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn>0.5</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in
P-TEM simulations may also introduce uncertainties. In addition, because we
used the modern inundation map to delineate the peatland and upland within
each grid cell, we might have overestimated the total peatland area since not
all inundated areas are peatlands. Linking field-estimated basal ages of peat
cores to the vegetation types during each period involves large uncertainties
due to the limitation of the peat classification and insufficient peat
samples. Thus, the estimated spatially explicit basal age data shall also
introduce a large uncertainty to our regional quantification of carbon
accumulation.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p>We used a biogeochemistry model for both peatland and non-peatland ecosystems
to quantify the C stock and its changes over time in Alaskan terrestrial
ecosystems during the last 15 000 years. The simulated peat SOC accumulation
rates were compared with peat-core data from four peatlands on the Kenai
Peninsula in southern Alaska. The model estimated the peat SOC accumulation
rate trajectory throughout the Holocene well. Our regional simulation showed
that 36–63 Pg C had been accumulated in Alaskan land ecosystems starting
15 000 years ago, including 27–48 Pg C in peatlands and 9–15 Pg C in
non-peatlands (within 1 m depth). We also estimated that 2.5–3.7 Pg C was
stored in contemporary Alaskan vegetation, with 0.3–0.6 Pg C in peatlands
and 2.2–3.1 Pg C in non-peatlands. The estimated average rate of peat C
accumulation was 2.3 Tg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> with a peak (5.1 Pg C yr<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in
the HTM, 4-fold higher than the rate of 1.4 Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> over the rest of
the Holocene. The 20th century represented another high SOC accumulation
period after a much lower accumulation period of the late Holocene. We
estimated an average depth of 1.9 m of peat in current Alaskan peatlands,
similar to the observed mean depth. The changes in vegetation distribution
were found to be the major control on the spatial variations of SOC
accumulation in different time periods. The warming in the HTM characterized
by the increased summer temperature and increased seasonality of solar
radiation, as well as the higher precipitation, might have played an
important role in the high C accumulation.</p>
</sec>
<sec id="Ch1.S5">
  <title>Data availability</title>
      <p>Data presented in this paper are publicly accessible: ECBilt-CLIO
Paleosimulation (<uri>http://apdrc.soest.hawaii.edu/datadoc/sim2bl.php</uri>),
CRU2.0 (<uri>http://www.cru.uea.ac.uk/data</uri>). Model parameter data and the
model evaluation process are in Wang et al. (2016). Other simulation data
including model codes are available upon request from the corresponding
author (qzhuang@purdue.edu).</p>
</sec>

      
      </body>
    <back><ack><title>Acknowledgements</title><p>We acknowledge the funding support from NSF project IIS-1027955 and DOE
project DE-SC0008092. We also acknowledge the SPRUCE project for allowing us
to use its data. <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by:
A. V. Eliseev<?xmltex \hack{\newline}?> Reviewed by: two anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Quantifying soil carbon accumulation in Alaskan terrestrial ecosystems during the last 15 000 years</article-title-html>
<abstract-html><p class="p">Northern high latitudes contain large amounts of soil organic carbon (SOC),
of which Alaskan terrestrial ecosystems account for a substantial proportion.
In this study, the SOC accumulation in Alaskan terrestrial ecosystems over
the last 15 000 years was simulated using a process-based biogeochemistry
model for both peatland and non-peatland ecosystems. Comparable with the
previous estimates of 25–70 Pg C in peatland and 13–22 Pg C in
non-peatland soils within 1 m depth in Alaska using peat-core data, our
model estimated a total SOC of 36–63 Pg C at present, including
27–48 Pg C in peatland soils and 9–15 Pg C in non-peatland soils.
Current vegetation stored 2.5–3.7 Pg C in Alaska, with 0.3–0.6 Pg C in
peatlands and 2.2–3.1 Pg C in non-peatlands. The simulated average rate of
peat C accumulation was 2.3 Tg C yr<sup>−1</sup>, with a peak value of
5.1 Tg C yr<sup>−1</sup> during the Holocene Thermal Maximum (HTM) in the early
Holocene, 4-fold higher than the average rate of 1.4 Tg C yr<sup>−1</sup> over
the rest of the Holocene. The SOC accumulation slowed down, or even ceased,
during the neoglacial climate cooling after the mid-Holocene, but increased
again in the 20th century. The model-estimated peat depths ranged from 1.1 to
2.7 m, similar to the field-based estimate of 2.29 m for the region. We
found that the changes in vegetation and their distributions were the main
factors in determining the spatial variations of SOC accumulation during
different time periods. Warmer summer temperature and stronger radiation
seasonality, along with higher precipitation in the HTM and the 20th century,
might have resulted in the extensive peatland expansion and carbon
accumulation.</p></abstract-html>
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