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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-14-1123-2017</article-id><title-group><article-title><?xmltex \vspace*{0.5cm}?>Manganese in the west Atlantic Ocean in the context of the first global
ocean circulation model of manganese</article-title>
      </title-group><?xmltex \runningtitle{Manganese in the Atlantic Ocean}?><?xmltex \runningauthor{M.~van~Hulten et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff6">
          <name><surname>van Hulten</surname><given-names>Marco</given-names></name>
          <email>mvhulten@lsce.ipsl.fr</email>
        <ext-link>https://orcid.org/0000-0002-3045-4949</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3 aff4">
          <name><surname>Middag</surname><given-names>Rob</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3326-530X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Dutay</surname><given-names>Jean-Claude</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3306-9015</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff5">
          <name><surname>de Baar</surname><given-names>Hein</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Roy-Barman</surname><given-names>Matthieu</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Gehlen</surname><given-names>Marion</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9688-0692</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Tagliabue</surname><given-names>Alessandro</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Sterl</surname><given-names>Andreas</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Laboratoire des Sciences du Climat et de l'Environnement (LSCE), IPSL,
CEA–Orme des Merisiers, 91191 Gif-sur-Yvette, France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Chemistry, NIWA/University of Otago Research Centre for
Oceanography, Dunedin 9054, New Zealand</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Ocean Sciences &amp; Institute of Marine Sciences,
University of California Santa Cruz, CA 95064, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>NIOZ Royal Netherlands Institute for Sea Research, Department of Ocean
Systems, and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, the Netherlands</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>University of Groningen (RUG), Postbus 72, 9700 AB Groningen, the Netherlands</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Royal Netherlands Meteorological Institute (KNMI), Utrechtseweg 297, 3731 GA De Bilt, the Netherlands</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>University of Liverpool, 4 Brownlow Street, Liverpool L69 3GP, UK</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Marco van Hulten (mvhulten@lsce.ipsl.fr)</corresp></author-notes><pub-date><day>9</day><month>March</month><year>2017</year></pub-date>
      
      <volume>14</volume>
      <issue>5</issue>
      <fpage>1123</fpage><lpage>1152</lpage>
      <history>
        <date date-type="received"><day>6</day><month>July</month><year>2016</year></date>
           <date date-type="rev-request"><day>11</day><month>July</month><year>2016</year></date>
           <date date-type="rev-recd"><day>8</day><month>February</month><year>2017</year></date>
           <date date-type="accepted"><day>10</day><month>February</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017.html">This article is available from https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017.pdf</self-uri>


      <abstract>
    <p>Dissolved manganese (Mn) is a biologically essential element.
Moreover, its oxidised form is involved in removing itself and several other trace
elements from ocean waters.
Here we report the longest thus far (17 500 km length) full-depth ocean section
of dissolved Mn in the west Atlantic Ocean, comprising 1320 data values of high
accuracy.
This is the GA02 transect that is part of the GEOTRACES
programme, which aims to understand trace element distributions.
The goal of this study is to combine these new observations with new,
state-of-the-art, modelling to give a first assessment of the main sources and
redistribution of Mn throughout the ocean.
To this end, we simulate the distribution of dissolved Mn using a
global-scale circulation model.
This first model includes simple parameterisations to account
for the sources, processes and sinks of Mn in the ocean.
Oxidation and (photo)reduction, aggregation and settling, as well as biological
uptake and remineralisation by plankton are included in the model.
Our model provides, together with the observations, the following insights:
<list list-type="bullet"><list-item><p>The high surface concentrations of manganese are caused by the
combination of photoreduction and sources contributing to the upper ocean.
The most important sources are sediments, dust, and, more locally,
rivers.</p></list-item><list-item><p>Observations and model simulations suggest that surface Mn in the Atlantic
Ocean moves downwards into the southward-flowing North Atlantic Deep Water
(NADW), but because of strong removal rates there is no elevated concentration
of Mn visible any more in the NADW south of 40<inline-formula><mml:math id="M1" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N.</p></list-item><list-item><p>The model predicts lower dissolved Mn in surface waters of the
Pacific Ocean than the observed concentrations.
The intense oxygen minimum zone (OMZ) in subsurface waters is deemed to be a
major source of dissolved Mn also mixing upwards into surface waters, but the
OMZ is not well represented by the model.
Improved high-resolution simulation of the OMZ may solve this problem.</p></list-item><list-item><p>There is a mainly homogeneous background concentration of dissolved Mn of
about 0.10–0.15 <inline-formula><mml:math id="M2" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> throughout most of the deep ocean. The model
reproduces this by means of a threshold on particulate manganese oxides of
25 <inline-formula><mml:math id="M3" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>, suggesting that a minimal concentration of particulate Mn is
needed before aggregation and removal become efficient.</p></list-item><list-item><p>The observed distinct hydrothermal signals are produced by assuming both a
strong source and a strong removal of Mn near hydrothermal vents.</p></list-item></list></p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Dissolved manganese (<inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) is taken up by phytoplankton,
because Mn is crucial for photosynthesis and other biological functions
<xref ref-type="bibr" rid="bib1.bibx88" id="paren.1"/>.
Furthermore, its oxidised form
(<inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) plays an important role in the removal of several
other trace metals from seawater <xref ref-type="bibr" rid="bib1.bibx126" id="paren.2"/>.
While in the open ocean, manganese (Mn) exists in small concentrations, it is the
twelfth most plentiful element in the Earth's crust <xref ref-type="bibr" rid="bib1.bibx124" id="paren.3"/>.
In seawater, Mn occurs in many forms, including the bioavailable dissolved
form.
After phytoplankton death, incorporated Mn sinks downwards
together with the dead material, but most of the organic material is
remineralised before reaching the sea floor <xref ref-type="bibr" rid="bib1.bibx32" id="paren.4"/>,
releasing Mn back to the water.</p>
      <p>Another important mechanism of storing Mn in particles, besides biological
incorporation, is the removal of dissolved Mn via larger colloids on which the Mn
is oxidised to insoluble Mn(IV) (and possibly the other Mn(III) oxidation
state), and the subsequent aggregation by particulate matter.
Oxidation
occurs everywhere in the ocean where oxygen is available.
This process can be
strongly accelerated by Mn(II)-oxidising microorganisms, primarily bacteria and
fungi <xref ref-type="bibr" rid="bib1.bibx107 bib1.bibx108 bib1.bibx113" id="paren.5"/>, but the role of these organisms is not well understood <xref ref-type="bibr" rid="bib1.bibx85" id="paren.6"/>.
The reverse process is the reduction of Mn oxides to bioavailable
dissolved Mn(II), i.e. Mn<inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup><mml:mtext>(aq)</mml:mtext></mml:mrow></mml:math></inline-formula>.
The full oxidation–reduction (redox) equilibrium reaction, in its most simple
form, is given by <xref ref-type="bibr" rid="bib1.bibx32" id="text.7"/>:
          <disp-formula id="R1" content-type="numbered reaction"><mml:math id="M7" display="block"><mml:mrow><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mn</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><?xmltex \hspace{3mm}?><mml:mi mathvariant="italic">⇋</mml:mi><?xmltex \hspace{3mm}?><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">MnO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msup><mml:mi mathvariant="normal">H</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Reduction is significantly faster under the influence of sunlight.
It is hence referred to as <italic>photoreduction</italic> when irradiance is the major
contributor.
The relative rate of reduction compared to oxidation
is important for Mn(II) availability.
An overall net higher oxidation rate implies more particle formation, hence more Mn export.</p>
      <p>Manganese enters the open ocean through lithogenic dust deposition <xref ref-type="bibr" rid="bib1.bibx5" id="paren.8"/> and
lateral advection from reducing sediments <xref ref-type="bibr" rid="bib1.bibx41" id="paren.9"/>.
Sediments along the relatively shallow (<inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> m depth) ocean margins tend to
receive more organic deposition and hence, by enhanced microbial decomposition, they are
more anoxic and a stronger source of reduced Mn than deep sea sediments.
Surface <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is especially high in the central Atlantic Ocean and up
to at least 30<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N
because of high dust input from the Sahara in combination with photoreduction
<xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx45 bib1.bibx37 bib1.bibx4 bib1.bibx25 bib1.bibx125" id="paren.10"/>.
Similarly,
<inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is high in the northern Indian Ocean <xref ref-type="bibr" rid="bib1.bibx123" id="paren.11"/>.
Dissolved Mn diffuses out of oxygen-deprived sediments, because sediment microorganisms reduce
<inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> if there is no more oxygen or nitrate left
<xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx55 bib1.bibx109 bib1.bibx78" id="paren.12"/>.
As long as there is oxygen in the sediment, the organic carbon is remineralised by
using this oxygen as an electron acceptor <xref ref-type="bibr" rid="bib1.bibx32" id="paren.13"/>.</p>
      <p>Rivers are another source of Mn to the ocean <xref ref-type="bibr" rid="bib1.bibx30 bib1.bibx1" id="paren.14"/>.
While much of the fluvial Mn is removed within the estuaries into the sediments by scavenging and
aggregation, a large part may finally be transported to the ocean by diffusion
from and resuspension of the sediments <xref ref-type="bibr" rid="bib1.bibx43 bib1.bibx20" id="paren.15"/>.
Typically, the smaller sediment particles (0.5–4 <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>)
have a high Mn content, and, because of their small size, are able to reach
the open ocean <xref ref-type="bibr" rid="bib1.bibx127 bib1.bibx110 bib1.bibx115" id="paren.16"/>.
Manganese may also flux into the ocean by melting sea ice <xref ref-type="bibr" rid="bib1.bibx77" id="paren.17"/>.
Finally, overwhelming evidence is found of manganese fluxing out of hydrothermal vents
<xref ref-type="bibr" rid="bib1.bibx50 bib1.bibx51 bib1.bibx42 bib1.bibx52 bib1.bibx76 bib1.bibx77 bib1.bibx35" id="paren.18"/>.</p>
      <p>Downward fluxes of settling particles that have been collected in sediment traps show a
strong correlation between lithogenic particles and authigenic Mn
<xref ref-type="bibr" rid="bib1.bibx94" id="paren.19"/>.
Therefore, lithogenic particles are likely to play a
significant role in the removal (oxidation, scavenging and aggregation) of Mn
<xref ref-type="bibr" rid="bib1.bibx29" id="paren.20"/>.
Here the ballast effect of lithogenic particles, which typically have a density
of about twice of that of
seawater, is likely playing a major role in rapid settling of
agglomerates of biogenic and lithogenic particles including Mn-oxide coatings
<xref ref-type="bibr" rid="bib1.bibx6" id="paren.21"/>.
This is consistent with the fact that most suspended particles are small (less
than 2 <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>), but the larger aggregates are deemed to be the
significant contributors to the vertical flux <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx10" id="paren.22"/>.
The complete process may be more complicated than described above
<xref ref-type="bibr" rid="bib1.bibx14" id="paren.23"/>, e.g. because Mn binds to dissolved ligands such that more of it may
stay in solution <xref ref-type="bibr" rid="bib1.bibx99 bib1.bibx67 bib1.bibx64" id="paren.24"/>.
Manganese oxides are important scavengers of other trace metals like iron,
cobalt, nickel and zinc <xref ref-type="bibr" rid="bib1.bibx126 bib1.bibx84 bib1.bibx73 bib1.bibx98 bib1.bibx114" id="paren.25"/>,
as well as insoluble radionuclides such as thorium and protactinium
<xref ref-type="bibr" rid="bib1.bibx89 bib1.bibx40 bib1.bibx44" id="paren.26"><named-content content-type="pre">e.g.</named-content></xref>.
Therefore, Mn availability does not only directly impact primary production but
may also play a role in removing other elements from the surface ocean.
These elements include biologically essential trace metals as well as
many more trace elements.</p>
      <p>Published observational studies, like the results of <xref ref-type="bibr" rid="bib1.bibx125" id="text.27"/>,
show low, relatively constant <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations of around
0.15 <inline-formula><mml:math id="M16" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> away from the boundaries.
Towards the surface there is a sharp increase of <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
Other notable elevations are near oceanic ridges.
These elevations of <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at mid-depths can be ascribed to
hydrothermal activity near those regions.
The hydrothermal plumes typically extend in the order of 1000 <inline-formula><mml:math id="M19" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx76 bib1.bibx77" id="paren.28"/>, or reach even up to
3000 <inline-formula><mml:math id="M20" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx90" id="paren.29"/>.</p>
      <p>What makes the distribution of <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> relatively homogeneous in
the interior of the ocean?
How can this be reconciled with localised features where <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is
very elevated compared to that stable “background concentration”?
Until now only local model simulations of the Mn ocean cycle have been
performed which focus on the processes most relevant for the respective
regions.
In other words, the different features of the <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution
have not been brought together in a unified model.</p>
      <p>The case of hydrothermal activity has been studied by
<xref ref-type="bibr" rid="bib1.bibx59" id="text.30"/> who modelled Mn in the deep ocean near hydrothermal
vents.
They included four Mn tracers, namely a dissolved form, small particles
associated with bacteria, larger aggregate particles, and one in
sediments as the model includes benthic fluxes.
They found that “more than 80 % of the hydrothermal Mn is deposited
within several hundred kilometres of the ridge crest though dissolved Mn
concentrations beyond that distance exceed background levels by many
times”.
This illustrates a high Mn input and removal from hydrothermal vents, as well
as the previously mentioned large plume extension.</p>
      <p>The <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution in the North Pacific Ocean has
been modelled by <xref ref-type="bibr" rid="bib1.bibx46" id="text.31"/>, in a 1-D vertical model neglecting
horizontal transport.
Their oxidation model depends on the oxygen concentration and the hydroxide activity.
Their region of interest was on the upper and intermediate depth ocean,
and their goal was to reproduce the <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> maximum in
the oxygen minimum zone (OMZ).
Besides the North Pacific, the OMZ is also present in other basins, including
the northwestern Indian Ocean <xref ref-type="bibr" rid="bib1.bibx96 bib1.bibx62" id="paren.32"/>.
<xref ref-type="bibr" rid="bib1.bibx46" id="text.33"/> found that the combination of remineralisation rates and
decreased oxidation in the OMZ explained the <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
subsurface maximum in their profiles, whereas a flux from the continental margin
sediments did not appear to be responsible.
In the euphotic zone <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was incorporated in
phytoplankton, while remineralised <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the aphotic
(and disphotic) zone was lost by oxidation and scavenging.</p>
      <p>While these modelling efforts are useful for their purposes, no studies
exist in which the global ocean <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution is modelled.
To arrive at a more integrated understanding of the behaviour of pelagic Mn,
we include a Mn model in a global ocean general circulation model.
Specifically, we will test a simple mechanism that should be able to give
insight into the apparently stable <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration, and its
contrast to strong Mn sources.
This is the first time that a global ocean model for manganese has been written and
assessed.
It is a basic model that should give a starting point for further studies.
At the moment there is no mechanistic evidence for typical
uptake–remineralisation processes as is the case for, e.g. iron.
However, as there is of course uptake of Mn by phytoplankton, and sometimes it
can even be a limiting nutrient <xref ref-type="bibr" rid="bib1.bibx79" id="paren.34"/>, we include a biological
cycle of Mn in the model.
While we perform a model simulation on a global scale, we give more
attention to the <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution in the Atlantic Ocean.
We will compare our simulations in detail, and quantitatively, with the
highly accurate dataset from the GEOTRACES programme reported here,
namely the GA02 section in the west Atlantic Ocean.
Here <italic>accuracy</italic> refers to the proximity of the measurements to the true
values, as confirmed by (i) the compliance of reference samples with
international consensus values (Table 1), and (ii) the agreement at the crossover
station (Fig. <xref ref-type="fig" rid="Ch1.F1"/>) with the US section GA03, and (iii) the
agreement of the two independent methods, flow injection analysis (FIA) and inductively coupled plasma mass spectrometry (ICP-MS), for the data of
section GA02 (Fig. <xref ref-type="fig" rid="Ch1.F2"/>).
In addition, the North Atlantic GA03 <xref ref-type="bibr" rid="bib1.bibx125" id="paren.35"/> and the Zero-Meridian
Southern Ocean GIPY5 <xref ref-type="bibr" rid="bib1.bibx76" id="paren.36"/> transects will be used for
further detailed visual comparison.
Furthermore, in those regions we can study important properties of the ocean
geochemistry of manganese and the interaction with circulation, including the
Atlantic overturning circulation and hydrothermal activity.</p>
      <p>In this study our goal is to assess the fundamental processes that are the most
important to accurately simulate <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, including
the aforementioned properties of the dissolved Mn distribution.
In this case, <italic>accuracy</italic> refers to the proximity of the model to the
observations.
For clarity we will always qualify if this relates to the closeness of the model
simulation to the observations instead of the proximity of the measurements to
the true values.
To this end, we will first introduce our Mn model with its processes, sources and sinks.
We will show the results of a reference simulation, which will be
compared with recent high-accuracy observations.
Also, several sensitivity simulations will be presented, studying the effects of
the biological cycle, the intense nature of hydrothermal vents and the strong
removal of manganese from the seawater.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Observations in the west Atlantic Ocean</title>
<sec id="Ch1.S2.SS1.SSS1">
  <title>Sample collection</title>
      <p>For the determination of trace metal concentrations,
samples were collected along the GEOTRACES Atlantic
meridional GA02 transect of the Netherlands (Fig. <xref ref-type="fig" rid="Ch1.F5"/>).
Sampling was done with an all-titanium ultraclean conductivity–temperature–depth probe (CTD) sampling
system for trace metals <xref ref-type="bibr" rid="bib1.bibx24" id="paren.37"/> with novel polyvinylidene difluoride (PVDF) filter samplers
<xref ref-type="bibr" rid="bib1.bibx92 bib1.bibx80 bib1.bibx81" id="paren.38"/>.
Immediately upon recovery, the complete titanium frame with its 24 PVDF samplers
was placed inside a clean room environment where the sub-samples
for trace metal analysis were collected. The water was filtered from the PVDF
samplers over a 0.2 <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> filter cartridge (Sartobran-300,
Sartorius) under pressure (1.5 atm) of (inline prefiltered) nitrogen gas.
Sub-samples for dissolved metals were taken in cleaned <xref ref-type="bibr" rid="bib1.bibx75" id="paren.39"><named-content content-type="pre">see</named-content><named-content content-type="post">for cleaning
procedure</named-content></xref> LDPE sample bottles. All sample bottles were rinsed five
times with the sample seawater. Seawater samples were acidified with HCl to a
concentration of 0.024 M HCl which results in a pH of 1.7 to 1.8 with
BASELINE<sup>®</sup> Hydrochloric Acid (SEASTAR CHEMICALS Inc.).</p>
</sec>
<sec id="Ch1.S2.SS1.SSS2">
  <title>Analysis of dissolved Mn</title>
      <p>Analyses of dissolved manganese were performed shipboard with the method
developed by <xref ref-type="bibr" rid="bib1.bibx26" id="text.40"/>, with some slight modifications in the preparation
and brands of the chemicals used.
Notably, samples were buffered in-line
with an ammonium borate sample buffer to a pH of <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mn mathvariant="normal">8.5</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>.
This buffer was produced by dissolving
30.9 g of boric acid (Suprapure, Merck) in 1 L MQ water (Millipore Milli-Q)
deionised water <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">18.2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mi mathvariant="normal">M</mml:mi><mml:mi mathvariant="normal">Ω</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and adjusting the pH
to 9.4 with ammonium hydroxide (Suprapure, Merck).</p>
      <p>The buffered sample was pre-concentrated for 150 s on a Toyopearl AF-Chelate
650M (TosoHaas, Germany) column. Hereafter the column was rinsed for 60 s with
MQ water to remove interfering salts. The Mn was
subsequently eluted from the column for 200 s with a solution of 0.1 M
three-times quartz-distilled formic acid (reagent grade, Merck) containing
0.1 M hydrogen peroxide (Suprapure, Merck) and 12 mM ammonium hydroxide
(Suprapure, Merck). The pH of this carrier solution was adjusted to <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.9</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>. The eluate with the dissolved Mn passed a second column of immobilised
8-hydroxyquinoline <xref ref-type="bibr" rid="bib1.bibx57" id="paren.41"/> to remove interfering iron ions in the
carrier solution <xref ref-type="bibr" rid="bib1.bibx26" id="paren.42"/>. Hereafter the carrier mixed
with 0.7 M ammonium hydroxide (Suprapure Merck) and a luminol solution. The
latter luminol solution was made by diluting 600 <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> luminol
stock solution and 10 <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> TETA (triethylenetetramine, Merck) in
1 <inline-formula><mml:math id="M40" display="inline"><mml:mi mathvariant="normal">L</mml:mi></mml:math></inline-formula> MQ. The luminol stock solution was made by diluting 270 mg luminol
(3-aminophtalhydrazide, Aldrich) and 500 mg potassium carbonate in 15 mL MQ.
The resulting mixture of carrier solution, ammonium hydroxide and luminol
solution had a pH of <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mn mathvariant="normal">10.2</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula> and entered a 3 m length mixing coil
placed in a water bath of 25 <inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Hereafter the chemiluminescence was
detected with a Hamamatsu HC135 Photon counter.  Concentrations of dissolved Mn
were calculated in nanomole per litre (nM) from the photon emission peak height
of triplicate measurements.</p>
      <p>The system was calibrated using standard additions from a 5000 nM Mn stock
solution (Fluka) to filtered acidified seawater of low Mn concentration that was
collected in the sampling region. A five-point calibration line (0, 0.1, 0.2, 0.6
and 1.2 nM standard additions) and blank determination were made every day. The
three lowest points (0, 0.1 and 0.2 nM) of the calibration line were measured
in triplicate and the two highest points (0.6 and 1.2 nM) in duplicate in order
to add more weight to the lower part of the calibration line.  The blank was
determined by measuring acidified MQ which was below the detection limit and
subsequently no blank was subtracted. The limit of detection defined as 3
times the standard deviation of the lowest value observed was <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula> nM. The
flow injection system was rinsed every day with a 0.5 M HCl solution.</p>
      <p>An internal reference sample was measured in triplicate every day. This was a
sub-sample of a 25 <inline-formula><mml:math id="M44" display="inline"><mml:mi mathvariant="normal">L</mml:mi></mml:math></inline-formula> volume of filtered seawater that was taken at the
beginning of Leg 1 (also used during Leg 2, i.e. Iceland to the Equator) and Leg 3
(Punta Arenas, Chile, to the Equator). The relative standard deviation (i.e.
the precision) of this replicate analysis seawater sample that was analysed 40
times on different days in triplicate was 2.57 % (Leg 1 and 2) and 1.21 %
for 17 analyses during Leg 3. The relative standard deviation on single days was
on average 1.37 % and the absolute values were 0.45 and 0.61 nM for the first
two legs and Leg 3, respectively.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>Compliance with the international GEOTRACES reference samples program.
In the left column are the international consensus values. In the right column are the values
reported here as part of the GA02 dataset.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:mi mathvariant="normal">nmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">kg</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Consensus</oasis:entry>  
         <oasis:entry colname="col3">
                      <xref ref-type="bibr" rid="bib1.bibx81" id="text.43"/>
                    </oasis:entry>  
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">SAFe D2</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.35</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.33</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>(</mml:mo><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">24</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GEOTRACES S</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.46</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.14</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.47</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.03</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GEOTRACES D</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.21</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.03</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.18</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>As an external comparison, the international reference samples collected on the
GEOTRACES Intercalibration Cruise (<uri>www.geotraces.org</uri>) as well as
from the SAFe cruise <xref ref-type="bibr" rid="bib1.bibx47" id="paren.44"/> were analysed for Mn.
At different locations, large volumes of seawater were sampled of which
subsamples were analysed by various laboratories, resulting in different
reference values.
These labs include the Royal Netherlands Institute for Sea Research (NIOZ), who
also analysed the GA02 transect data.
An independent referee removed outliers and averaged the reference values,
resulting for each of the sample locations in a consensus value,
which is here considered as the true value.
These consensus values are listed in Table <xref ref-type="table" rid="Ch1.T1"/>, together with
the values determined by NIOZ.
The distributions of the measurements from NIOZ lie within the precision of the
consensus values.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p><inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at the 16 June 2010 (NL) and the
19 November 2011 (US) occupations of the crossover site of the Bermuda Atlantic
Time Series (BATS) station.
There is good agreement between the two sets of samples, as well as the two
different analytical methods, the shipboard FIA by NIOZ for the NL2010 samples,
and the lab ICP-MS at UCSC for both the NL2010 and the US2011 samples.
Each lab had its own independently prepared lab standards, further confirming
the overall accuracy.
Analyses by Rob Middag at NIOZ in 2010 and in 2011 at UCSC.
</p></caption>
            <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f01.png"/>

          </fig>

      <p>The vertical profiles of the BATS station for the Netherlands sampling on
13 June 2010 and the US sampling at 19 November 2011 are presented in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>.
For both occupations the samples were analysed by ICP-MS by Rob Middag at UCSC.
Moreover, the same analyst had done shipboard FIAs during the 2010 cruise.
There was no statistical difference within analytical uncertainty between the
three datasets in the deep waters <xref ref-type="bibr" rid="bib1.bibx81" id="paren.45"/>.
Small differences within the upper <inline-formula><mml:math id="M54" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 500 m between the Netherlands sampling
and the US sampling are deemed to be real due to the seasonal variability over
the more than 1 year time difference of sampling.
Furthermore, these Mn profiles are also consistent with the profiles determined
by <xref ref-type="bibr" rid="bib1.bibx58" id="text.46"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>The correlation between the two methods of analysis for the
determination of <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at GA02 (shipboard and laboratory
mass spectrometry): <bold>(a)</bold> at Bermuda; <bold>(b)</bold> all 55 west Atlantic stations.
</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f02.pdf"/>

          </fig>

      <p>Besides the shipboard FIA, we also analysed samples
using mass spectrometer analysis.
Figure <xref ref-type="fig" rid="Ch1.F2"/> shows the correlation between the two methods of
analysis for the determination of <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, shipboard and
laboratory measurements.
There is a very good agreement between the shipboard and mass spectrometer
analyses, which strongly suggests a high observational accuracy.
For the GIPY5 transect in the Southern Ocean, we analysed
<inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> only through FIA.
Since we want to plot GA02 together with the GIPY5 in this study, we use the
observational data obtained from the shipboard FIA for the comparison with the
model simulations.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Model description</title>
      <p>In order to simulate the three-dimensional (3-D) distribution of dissolved Mn,
we use the general circulation model “Océan PArallélisé” (OPA)
that is part of NEMO, a framework for ocean models <xref ref-type="bibr" rid="bib1.bibx66" id="paren.47"/>.
We use the ORCA2-LIM configuration of NEMO.
The spatial resolution is 2<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> by 2<inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (where <inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="italic">ϕ</mml:mi></mml:math></inline-formula>
is the latitude) with an increased meridional resolution to 0.5<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in the
equatorial domain <xref ref-type="bibr" rid="bib1.bibx65" id="paren.48"/>.
The model has 30 vertical layers, with an increased vertical thickness from
10 <inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at the surface to 500 <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at 5000 <inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> depth.
Representation of the topography is based on the partial-step thickness
<xref ref-type="bibr" rid="bib1.bibx8" id="paren.49"/>.
Lateral mixing along isopycnal surfaces is performed both on tracers and
momentum <xref ref-type="bibr" rid="bib1.bibx61" id="paren.50"/>.
The parameterisation of <xref ref-type="bibr" rid="bib1.bibx34" id="text.51"/> is applied from 10<inline-formula><mml:math id="M66" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> poleward to
represent the effects of non-resolved mesoscale eddies.
Vertical mixing is modelled using the turbulent kinetic energy (TKE) scheme of
<xref ref-type="bibr" rid="bib1.bibx33" id="text.52"/>, as modified by <xref ref-type="bibr" rid="bib1.bibx66" id="text.53"/>.
The fluid dynamics used to drive our model is identical to that used in
<xref ref-type="bibr" rid="bib1.bibx3" id="text.54"/>.</p>
      <p>The model contains two tracers of Mn, referred to as dissolved
(<inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and oxidised (<inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) manganese.
These tracers are driven by the equations set out in this section, as well as
the velocity fields obtained from OPA.
Instead of calculating the dynamical variables of the model (velocity and
mixing), we run it off-line, using a climatology with a resolution of 5 days.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Model scheme:
biology in green; redox and scavenging in blue; circulation and mixing
(dynamics) in grey; and the sources dust, rivers, hydrothermal and sediment
are in light brown, light blue, dark brown and red, respectively.
<inline-formula><mml:math id="M69" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the dissolved and <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the oxidised Mn.
</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f03.pdf"/>

        </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F3"/> presents the conceptual scheme of our
manganese model.
The internal processes include biological uptake and remineralisation (green
arrows), reduction, oxidation, aggregation and burial (blue arrows in the
figure), and are described in the following subsections.
Manganese sources from rivers, the atmosphere, sediments and hydrothermal vents
are presented as arrows at the top and bottom of the figure.
These four Mn sources are presented in Fig. <xref ref-type="fig" rid="Ch1.F4"/>, and
Table <xref ref-type="table" rid="Ch1.T2"/> lists the absolute
contributions to the different basins by each of these sources, as well as
the relative contribution of every source to the world ocean.
The model parameters are summarised in Table <xref ref-type="table" rid="Ch1.T3"/>.
In the following subsections we will describe how the different sources and
processes are included in the model.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Sources of Mn to the ocean: effective <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> input flux <inline-formula><mml:math id="M72" display="inline"><mml:mi mathvariant="normal">Φ</mml:mi></mml:math></inline-formula>.
Three-dimensional fields are vertically integrated, such that dimensions
are molar fluxes.
Ranges vary between the different sources.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f04.pdf"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Absolute amount of effective annual input by an imposed Mn flux from
sediments, rivers and hydrothermal vents into each basin
(<inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mi mathvariant="normal">Mmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
The Southern Ocean is defined as the ocean south of 58.7<inline-formula><mml:math id="M74" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.
The line “total amount” denotes how much worldwide Mn is added to the
ocean due to a specific flux; “relative amount” is normalised to the
total Mn input flux.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Basin</oasis:entry>  
         <oasis:entry colname="col2">Dust</oasis:entry>  
         <oasis:entry colname="col3">Rivers</oasis:entry>  
         <oasis:entry colname="col4">Sediment</oasis:entry>  
         <oasis:entry colname="col5">Hydrothermal</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Atlantic Ocean</oasis:entry>  
         <oasis:entry colname="col2">2200</oasis:entry>  
         <oasis:entry colname="col3">127</oasis:entry>  
         <oasis:entry colname="col4">924</oasis:entry>  
         <oasis:entry colname="col5">13 917</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Pacific Ocean</oasis:entry>  
         <oasis:entry colname="col2">1183</oasis:entry>  
         <oasis:entry colname="col3">94</oasis:entry>  
         <oasis:entry colname="col4">1237</oasis:entry>  
         <oasis:entry colname="col5">59 846</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Indian Ocean</oasis:entry>  
         <oasis:entry colname="col2">1506</oasis:entry>  
         <oasis:entry colname="col3">25</oasis:entry>  
         <oasis:entry colname="col4">442</oasis:entry>  
         <oasis:entry colname="col5">18 653</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Southern Ocean</oasis:entry>  
         <oasis:entry colname="col2">14</oasis:entry>  
         <oasis:entry colname="col3">0</oasis:entry>  
         <oasis:entry colname="col4">206</oasis:entry>  
         <oasis:entry colname="col5">7 601</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Arctic Ocean</oasis:entry>  
         <oasis:entry colname="col2">23</oasis:entry>  
         <oasis:entry colname="col3">19</oasis:entry>  
         <oasis:entry colname="col4">463</oasis:entry>  
         <oasis:entry colname="col5">2 269</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Mediterranean Sea</oasis:entry>  
         <oasis:entry colname="col2">673</oasis:entry>  
         <oasis:entry colname="col3">12</oasis:entry>  
         <oasis:entry colname="col4">91</oasis:entry>  
         <oasis:entry colname="col5">0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">total amount (Mmol yr<inline-formula><mml:math id="M75" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">5598</oasis:entry>  
         <oasis:entry colname="col3">277</oasis:entry>  
         <oasis:entry colname="col4">3363</oasis:entry>  
         <oasis:entry colname="col5">102 286</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">relative amount (%)</oasis:entry>  
         <oasis:entry colname="col2">5.0</oasis:entry>  
         <oasis:entry colname="col3">0.2</oasis:entry>  
         <oasis:entry colname="col4">3.0</oasis:entry>  
         <oasis:entry colname="col5">91.7</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p>Mn model parameters for the <italic>Reference</italic> simulation.
The settling velocity <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is given by Eq. (<xref ref-type="disp-formula" rid="Ch1.E11"/>).
In <italic>LowHydro</italic> the hydrothermal flux and the maximum settling speed are
both reduced by a factor of 10 (<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:msup><mml:mo>:</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow><mml:mtext>,hydro</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>≡</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
In the sensitivity simulation <italic>NoThreshold</italic> the aggregation threshold
<inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is set to zero.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="113.811024pt"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Parameter</oasis:entry>  
         <oasis:entry colname="col2">Symbol</oasis:entry>  
         <oasis:entry colname="col3">Value used</oasis:entry>  
         <oasis:entry colname="col4">Known range</oasis:entry>  
         <oasis:entry colname="col5">References</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Mass fraction of Mn in dust</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>Mn,dust</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">880 ppm</oasis:entry>  
         <oasis:entry colname="col4">696–880 ppm</oasis:entry>  
         <oasis:entry colname="col5"><xref ref-type="bibr" rid="bib1.bibx124" id="text.55"/>,  and<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx74" id="text.56"/></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Dust Mn solubility</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M82" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">40 %</oasis:entry>  
         <oasis:entry colname="col4">10–70 %</oasis:entry>  
         <oasis:entry colname="col5">
                      <xref ref-type="bibr" rid="bib1.bibx4" id="text.57"/>
                    </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Sediment-source <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow></mml:math></inline-formula> ratio</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mtext>Mn:Fe,sed</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">0.2</oasis:entry>  
         <oasis:entry colname="col4">uncertain</oasis:entry>  
         <oasis:entry colname="col5"><xref ref-type="bibr" rid="bib1.bibx11" id="text.58"/>, and<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx102" id="text.59"/></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">River-source <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow></mml:math></inline-formula> ratio</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mtext>Mn:Fe,river</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">0.214</oasis:entry>  
         <oasis:entry colname="col4">uncertain</oasis:entry>  
         <oasis:entry colname="col5">
                      <xref ref-type="bibr" rid="bib1.bibx100" id="text.60"/>
                    </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Hydrothermal <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:msup><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula> ratio</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:msup><mml:mo>:</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow><mml:mo>,</mml:mo><mml:mtext>hydro</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.10</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">uncertain</oasis:entry>  
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Settling speed of <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">1–10 <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">0.9–1.4 <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">
                      <xref ref-type="bibr" rid="bib1.bibx93" id="text.61"/>
                    </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Oxidation rate constant</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.341</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">uncertain</oasis:entry>  
         <oasis:entry colname="col5"><xref ref-type="bibr" rid="bib1.bibx17" id="text.62"/>, and <?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx108" id="text.63"/></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Photoreduction rate constant</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,light</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:mn mathvariant="normal">98</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">(50–150)<inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">
                      <xref ref-type="bibr" rid="bib1.bibx108" id="text.64"/>
                    </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Aphotic reduction rate</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.70</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">(0.98–14.3)<inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><xref ref-type="bibr" rid="bib1.bibx17" id="text.65"/>, and<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx108" id="text.66"/></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Aggregation threshold</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">25 <inline-formula><mml:math id="M108" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">hypothetical</oasis:entry>  
         <oasis:entry colname="col5">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:math></inline-formula> incorporation ratio</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>Mn:P</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">(0.2–1.5)<inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><xref ref-type="bibr" rid="bib1.bibx76" id="text.67"/>, and <?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx116" id="text.68"/></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<sec id="Ch1.S2.SS2.SSS1">
  <title>Atmospheric source</title>
      <p>Manganese is added to the pool of <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the upper model layer, according to
              <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M114" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>dust</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>⋅</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mtext>Mn,dust</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mi>m</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="normal">Φ</mml:mi><mml:mtext>dust</mml:mtext></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M115" display="inline"><mml:mi mathvariant="script">D</mml:mi></mml:math></inline-formula> is the dissolved Mn concentration, <inline-formula><mml:math id="M116" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> is
the solubility of Mn in dust, <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>Mn,dust</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the mass fraction of Mn
in dust, <inline-formula><mml:math id="M118" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula> is the molar mass of Mn, and <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M120" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> is the upper model layer thickness.
The lithogenic dust deposition flux, <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Φ</mml:mi><mml:mtext>dust</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, is derived from
the Interaction with Chemistry and Aerosols (INCA) model <xref ref-type="bibr" rid="bib1.bibx38" id="paren.69"/>.
Here we use a 12 month climatology of INCA's output as a forcing.</p>
      <p>The average mass fraction of Mn in the Earth's upper
crust is 527 ppm <xref ref-type="bibr" rid="bib1.bibx124" id="paren.70"/>.
However, the fraction measured in Saharan dust is 880 ppm
<xref ref-type="bibr" rid="bib1.bibx74" id="paren.71"/>, consistent with <xref ref-type="bibr" rid="bib1.bibx37" id="text.72"/> and
<xref ref-type="bibr" rid="bib1.bibx104" id="text.73"/>.
Since most of the dust deposited on the Atlantic Ocean originates from
the Sahara and our focus is the Atlantic Ocean, the value of 880 ppm is
used for <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>Mn,dust</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>The solubility of Mn from dust is uncertain and relatively high compared
to most other trace metals.
Here <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> % of the Mn in dust is assumed to
dissolve, largely consistent with the values reported by
<xref ref-type="bibr" rid="bib1.bibx37" id="text.74"/>, <xref ref-type="bibr" rid="bib1.bibx45" id="text.75"/>, <xref ref-type="bibr" rid="bib1.bibx4" id="text.76"/>, <xref ref-type="bibr" rid="bib1.bibx25" id="text.77"/> and <xref ref-type="bibr" rid="bib1.bibx18" id="text.78"/>.
Several studies report even higher values (<inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> %), which are,
however, mainly from anthropogenic or otherwise processed dust, while
the lower reported values (<inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> %) are from natural dust, mainly of
Saharan origin.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F4"/>a presents the average Mn dissolution flux
of the 12 month climatology.
Globally this is 5.6 <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:mi mathvariant="normal">Gmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> of Mn.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <title>River source</title>
      <p>The manganese river source is modelled analogously to iron, which is part of the
biogeochemical model PISCES <xref ref-type="bibr" rid="bib1.bibx3" id="paren.79"/>.
This means that our manganese influx is proportional to the total dissolved
(organic and inorganic) carbon flux, just like for iron <xref ref-type="bibr" rid="bib1.bibx3" id="paren.80"/>.
Hence, the modelled concentration change of <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> caused by
river input is given by
              <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M128" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>rivers</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mtext>Mn:Fe,river</mml:mtext></mml:msub><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow><mml:mtext>diss</mml:mtext></mml:msub><mml:mo>]</mml:mo></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>rivers</mml:mtext></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow><mml:mtext>diss</mml:mtext></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is the dissolved iron concentration, and
<inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mtext>Mn:Fe,river</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the effective manganese<inline-formula><mml:math id="M131" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>iron
flux ratio, here set to 0.214, based on river-dissolved concentrations
<xref ref-type="bibr" rid="bib1.bibx100" id="paren.81"><named-content content-type="post">p. 2</named-content></xref>.
For comparison, the <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow></mml:math></inline-formula> flux ratio is much higher than the crustal ratio,
which is around 0.02 <xref ref-type="bibr" rid="bib1.bibx124" id="paren.82"/>, but probably underestimated as we do
not consider external sources of particulate manganese.
The effective <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> input into the ocean by rivers is
presented in Fig. <xref ref-type="fig" rid="Ch1.F4"/>b.
The global, effective river flux of Mn is 0.28 <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mi mathvariant="normal">Gmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS3">
  <title>Sediment source</title>
      <p>The largest contribution of Mn to the upper ocean is dust deposition, but over
large shelf and slope regions (e.g. polar oceans) the flux of
<inline-formula><mml:math id="M135" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from the sediment can be of the same order of magnitude
as, or higher than, the dust deposition flux <xref ref-type="bibr" rid="bib1.bibx79" id="paren.83"><named-content content-type="pre">e.g.</named-content><named-content content-type="post">for the Southern
Ocean</named-content></xref>.
The redox reactions in the sediment are not explicitly modelled, since
the sediment is not part of our model domain.
Therefore, Mn addition from the sediment is modelled as a prescribed
source.
Since we do not have global maps of <inline-formula><mml:math id="M136" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sediment–seawater flux, we
parameterise the flux based on existing parameterisations of nitrate and iron.</p>
      <p><xref ref-type="bibr" rid="bib1.bibx82" id="text.84"/> derived an empirical model for calculating the
denitrification rate as a function of the seafloor depth:
              <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M137" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ζ</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.9543</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.7662</mml:mn><mml:mo>⋅</mml:mo><mml:mi>ln⁡</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.235</mml:mn><mml:mo>⋅</mml:mo><mml:mi>ln⁡</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ζ</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the natural logarithm of the denitrification flux
(<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> of carbon) and <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
is a function of bathymetry.
<xref ref-type="bibr" rid="bib1.bibx3" id="text.85"/> used this model for their sediment source of dissolved Fe in
the PISCES model.
They used a high-resolution bathymetric map to account for the shallow shelves,
and modulated the seafloor depth (<inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>→</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) as follows:
              <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M142" display="block"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mfenced close=")" open="("><mml:mn mathvariant="normal">8</mml:mn><mml:mo>,</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>z</mml:mi><mml:mrow><mml:mn mathvariant="normal">500</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            We set the maximum iron flux to 1 <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
following <xref ref-type="bibr" rid="bib1.bibx2" id="text.86"/>.
We assume a porewater ratio <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mtext>Mn:Fe,sed</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>, and follow the same
method as <xref ref-type="bibr" rid="bib1.bibx3" id="text.87"/>.
Our final sediment addition of <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> into bottom water is given
by the following:
              <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M146" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>sediments</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">0.2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>z</mml:mi><mml:mtext>sed</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn><mml:msup><mml:mtext>e</mml:mtext><mml:mrow><mml:msub><mml:mi mathvariant="italic">ζ</mml:mi><mml:mtext>Fsed</mml:mtext></mml:msub></mml:mrow></mml:msup><mml:mo>)</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mtext>sed</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the grid box thickness of the bottom grid box (just above
the seafloor) in metres.
With this prescribed source, the Mn flux is limited to a maximum of about
75 <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
This can be seen in Fig. <xref ref-type="fig" rid="Ch1.F4"/>c: the
higher-than-70 <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> regions on the
shelves are especially notable as it falls in the upper (red) part of
the colour scale.
The global sediment flux of Mn is 3.4 <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:mi mathvariant="normal">Gmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS4">
  <title>Hydrothermal source</title>
      <p>Hydrothermal vent <inline-formula><mml:math id="M151" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> fluxes are modelled proportionally to that
of <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula> in <xref ref-type="bibr" rid="bib1.bibx95" id="text.88"/> and <xref ref-type="bibr" rid="bib1.bibx28" id="text.89"/>.
This approach is shown to have worked for iron
<xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx27 bib1.bibx112 bib1.bibx90" id="paren.90"/>.
The basic equation for the change of <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from hydrothermal
vent influx is
              <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M154" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>hydrothermal</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:msup><mml:mo>:</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow><mml:mo>,</mml:mo><mml:mtext>hydro</mml:mtext></mml:mrow></mml:msub><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi mathvariant="normal">Mn</mml:mi><mml:msup><mml:mo>:</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">hydro</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is the ratio between the
<inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula> effective inflow from hydrothermal vents
into the model domain. Recent observational studies found
<inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:msup><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula> concentration ratios of <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:mn mathvariant="normal">4.0</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx48" id="paren.91"/> and <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx90" id="paren.92"/> at
observational sites close to hydrothermal outflux regions. To satisfy this,
we assume that a dissolved fraction of 4 % is left when the hydrothermal
plume reaches these two observational sites.</p>
      <p>This high “solubility fraction” means that the hydrothermal vents are a large source of
<inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> compared to <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx112 bib1.bibx90" id="paren.93"/>.
The integrated Mn flux is 102 <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:mi mathvariant="normal">Gmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
In our simulations we will show that we need to assume such a large flux to
explain the observations.
This choice also relates to the fast modelled removal rate of <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> near the
depth of hydrothermal vents (explained later).
The hydrothermal <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source is presented in
Fig. <xref ref-type="fig" rid="Ch1.F4"/>d.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS5">
  <title>Redox processes</title>
      <p>Reduction and oxidation of <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> within the water column is a combination of several
processes.
Here we assume that <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is subject to reduction with a constant
rate, but significantly stimulated by sunlight <xref ref-type="bibr" rid="bib1.bibx108" id="paren.94"><named-content content-type="pre">e.g.</named-content></xref>.
This is taken into account in the model by using different <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for the
euphotic and aphotic zones of the ocean.
However, there are other processes playing a role that can locally be important.
Those include the microbial enhancement of the rate of oxidation in regions
where <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> supply is high <xref ref-type="bibr" rid="bib1.bibx108 bib1.bibx113" id="paren.95"/>, and the
dependence on the <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration and pH <xref ref-type="bibr" rid="bib1.bibx46 bib1.bibx91" id="paren.96"><named-content content-type="post">for Fe at
GA02</named-content></xref>.
However, at this stage we decide to not include a dependency on <inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
in the model.
Hence, here we choose to model Mn following a pseudo-first-order reaction
where <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are pseudo-first-order rate
constants <xref ref-type="bibr" rid="bib1.bibx105" id="paren.97"><named-content content-type="pre">conventional primes omitted, e.g.</named-content></xref>:
<?xmltex \hack{\newpage}?>

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M174" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E7"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>redox</mml:mtext></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E8"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">X</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>redox</mml:mtext></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where <inline-formula><mml:math id="M175" display="inline"><mml:mi mathvariant="script">X</mml:mi></mml:math></inline-formula> is the particulate oxidised Mn concentration, and
              <disp-formula id="Ch1.E9" content-type="numbered"><mml:math id="M176" display="block"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable class="cases" rowspacing="0.2ex" columnspacing="1em" columnalign="left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,light</mml:mtext></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>in the euphotic zone</mml:mtext></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mtext>elsewhere</mml:mtext></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,light</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the reduction rate in the euphotic zone and
<inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the reduction rate in the aphotic zone.
The euphotic zone is defined as the depths where the sunlight intensity is at
least 1 %.
The value for <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,light</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is taken from <xref ref-type="bibr" rid="bib1.bibx108" id="text.98"/> who found a
mean dissolution rate of natural Mn oxides of
<inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mn mathvariant="normal">98</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">23</mml:mn><mml:mo>)</mml:mo><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
The <inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value is much smaller and much more uncertain (varying by a
factor of 15 in <xref ref-type="bibr" rid="bib1.bibx108" id="altparen.99"/>).
As we have both dissolved and particulate <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> in our model, we chose to
fit the <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,light</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> to
<inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> from observations, resulting in a value
within the observational range of <xref ref-type="bibr" rid="bib1.bibx108" id="text.100"/>.
At the time of this study only <xref ref-type="bibr" rid="bib1.bibx17" id="text.101"/> was known to us as reporting
accurate dissolved and particulate Mn for the same samples (at the VERTEX-IV
station).
From this, <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was calculated, and as <xref ref-type="bibr" rid="bib1.bibx17" id="text.102"/> also sampled the
deep ocean, <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was derived from that study as well
(Table <xref ref-type="table" rid="Ch1.T3"/>).</p>
      <p>For one simulation, we will introduce a threshold on the oxidation process of
<inline-formula><mml:math id="M188" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
In that case, oxidation only takes place when <inline-formula><mml:math id="M189" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is higher
than a certain threshold value <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>; in other words,
<inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is multiplied by <inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="script">D</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mtext>thr</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
The Heaviside step function <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> equals zero where <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> and 1 where <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>.
Based on observations, we have estimated <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mtext>thr</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.125</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M197" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>, corresponding to the observed deep ocean background
value away from the influence of hydrothermal sources.
The value can be reproduced by first sorting the <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
concentrations.
Then we cut off the third quartile to remove the high values (above
0.42 <inline-formula><mml:math id="M199" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>), and chose a low value for a typical background
concentration (0.13 <inline-formula><mml:math id="M200" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> is the first quartile).
The reason for not choosing simply the minimum value is that values close to that
can be lower than the “background value” because of local removal processes.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS6">
  <title>Settling and burial</title>
      <p>Manganese oxides settle, resulting in a concentration change according to
              <disp-formula id="Ch1.E10" content-type="numbered"><mml:math id="M201" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">X</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>settling</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">X</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the settling velocity, set to a constant
1 <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> as long as <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">25</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">pM</mml:mi></mml:mrow></mml:math></inline-formula>.
If <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M206" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>, the settling velocity
is not a constant any more but a function of depth.
Still, in the mixed layer <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, but
if <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M210" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula> the sinking speed
increases linearly such that it reaches a value of 10 <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> at
2.5 <inline-formula><mml:math id="M212" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> depth.
The manganese oxide is buried when arriving at the ocean floor, which
means that it is removed from the model domain.</p>
      <p>The rationale for increasing the settling velocity
above a certain threshold is that if <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is large enough, dense
aggregates form that have faster sinking rates.
This is not unlike increasing velocities of detritus in some models
<xref ref-type="bibr" rid="bib1.bibx54 bib1.bibx3" id="paren.103"/>.
Notably mineral particles (sand, clay, carbonate) of high density in the
order of 2–3 times that of seawater are responsible for this <xref ref-type="bibr" rid="bib1.bibx71" id="paren.104"/>.
Particulate organic carbon may play an important role as well <xref ref-type="bibr" rid="bib1.bibx87" id="paren.105"/>.
In this way, <inline-formula><mml:math id="M214" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> does not go to zero while still
providing a deep ocean sink.
As long as this critical particulate Mn concentration of 25 <inline-formula><mml:math id="M215" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula> is
not reached, aggregation of small <inline-formula><mml:math id="M216" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> particles does not yet
occur.
The choice of the critical concentration of 25 <inline-formula><mml:math id="M217" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>, also referred
to as the <italic>aggregation threshold</italic>, is derived from the redox rate constants
in combination with a typical, low value of the observed dissolved Mn
concentration (here chosen as 0.125 <inline-formula><mml:math id="M218" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>):
<inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>⋅</mml:mo><mml:mn mathvariant="normal">0.125</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M220" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M222" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>.
More precisely, settling of <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> follows
Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>)
with the settling velocity

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M224" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">9</mml:mn><mml:mo>⋅</mml:mo><mml:mtext>max</mml:mtext><mml:mfenced open="(" close=")"><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">MLD</mml:mi></mml:mrow><mml:mrow><mml:mn mathvariant="normal">2.5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E11"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm} }?><mml:mo>⋅</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="script">X</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where <inline-formula><mml:math id="M225" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> is the depth, MLD is the mixed layer depth, and
<inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the aggregation threshold set to 25 <inline-formula><mml:math id="M227" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Transect (or expedition) names corresponding to station colours:
GIPY11 (green) in the Arctic Ocean;
GIPY4 (violet) and GIPY5 (green) in the Atlantic sector of the Southern Ocean;
GI04 (blue) in the Indian Ocean;
GA02 (red) in the west Atlantic Ocean;
GA03 (blue) in the North Atlantic Ocean;
VERTEX-4 (blue) in the North Pacific Ocean;
EUCFe (violet) in the equatorial Pacific Ocean;
CLIVAR P16 (yellow) in the Pacific Ocean;
GP16 (black) in the South Pacific;
CoFeMUG (black) in the South Atlantic Ocean.
See Table <xref ref-type="table" rid="Ch1.T5"/> for an overview with references
and the number of observations.
</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f05.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS2.SSS7">
  <title>Biological cycle</title>
      <p>Manganese is incorporated into phytoplankton during growth.
To this end, we run the PISCES-v2 biogeochemical ocean model
<xref ref-type="bibr" rid="bib1.bibx3" id="paren.106"/> together with our manganese model.
The biological processes where Mn is involved are modelled in proportion to the
change in phosphate concentration, thus it is given by the following:
              <disp-formula id="Ch1.E12" content-type="numbered"><mml:math id="M228" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>biology</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mtext>Mn:P</mml:mtext></mml:msub><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>]</mml:mo></mml:mrow></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mo mathsize="1.5em">|</mml:mo><mml:mtext>biology</mml:mtext></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M229" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is the phosphate concentration.
The extended Redfield ratio for Mn, <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>Mn:P</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>,
is set to <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, the value that was determined from data at
the GIPY5 Zero Meridian section <xref ref-type="bibr" rid="bib1.bibx76" id="paren.107"/>.
This is a typical value for the manganese to phosphorus ratio in phytoplankton,
though the full range of synchrotron X-ray fluorescence determined ratios,
i.e. those that correspond to intracellular concentrations, is
<inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx116" id="paren.108"/>.</p>
      <p>There is no growth limitation of phytoplankton by shortage of dissolved Mn,
i.e. in the model, manganese does not affect the biological carbon cycle.</p>
      <p>There are four types of plankton in PISCES: nanophytoplankton,
diatoms, microzooplankton and mesozooplankton
(presented in Fig. <xref ref-type="fig" rid="Ch1.F3"/> as the box “living”).
There are two detrital pools, namely small particles settling with
2 <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and large particles
settling in our model configuration with 50 <inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (box
“detrital”).
Manganese is incorporated in the four living pools according to the
PISCES equations for phosphorus.
Through other processes they become part of detrital material or particulate
organic matter.
These pools are, however, not explicitly followed.
Only the biological sources and sinks of <inline-formula><mml:math id="M236" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are modelled,
entailing the conversion of <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to the two phytoplankton
pools, and from all particle pools to <inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Simulations</title>
      <p>The <italic>Reference</italic> simulation was spun up for 600 <inline-formula><mml:math id="M239" display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula> to reach a steady state.
From year 100 onwards two sensitivity simulations were forked off to run in
parallel with <italic>Reference</italic> for another 500 <inline-formula><mml:math id="M240" display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula>.
These simulations are variations of the <italic>Reference</italic> simulation that uses
the parameters listed in Table <xref ref-type="table" rid="Ch1.T3"/>.
Table <xref ref-type="table" rid="Ch1.T4"/> lists the simulations and their key parameters.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><caption><p>List of simulations with the parameters changed compared to the reference simulation in boldface.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Simulation name</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi mathvariant="normal">Mn</mml:mi><mml:msup><mml:mo>:</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">hydro</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>/(<inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M245" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M247" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>Mn:P</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>Reference</italic></oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.10</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">1–10</oasis:entry>  
         <oasis:entry colname="col4">25</oasis:entry>  
         <oasis:entry colname="col5">0</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>NoBio</italic></oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.10</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">1–10</oasis:entry>  
         <oasis:entry colname="col4">25</oasis:entry>  
         <oasis:entry colname="col5">0</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M252" display="inline"><mml:mn mathvariant="bold">0</mml:mn></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>LowHydro</italic></oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:mn mathvariant="bold">0.01</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="bold">10</mml:mn><mml:mn mathvariant="bold">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M254" display="inline"><mml:mn mathvariant="bold">1</mml:mn></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">–</oasis:entry>  
         <oasis:entry colname="col5">0</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>NoThreshold</italic></oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.10</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">1–10</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M257" display="inline"><mml:mn mathvariant="bold">0</mml:mn></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">0</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>OxidThreshold</italic></oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.10</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">1–10</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M260" display="inline"><mml:mn mathvariant="bold">0</mml:mn></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M261" display="inline"><mml:mn mathvariant="bold">0.125</mml:mn></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>Our second simulation is without a biological cycle of Mn (<italic>NoBio</italic>).
In this simulation Eq. (<xref ref-type="disp-formula" rid="Ch1.E12"/>) is removed from the model, or,
equivalently, <inline-formula><mml:math id="M263" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>Mn:P</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is set to zero.
This simulation should illustrate the consequences of the (lack of) biological
incorporation and subsequent remineralisation of Mn.</p>
      <p>The goal of <italic>LowHydro</italic> is to investigate whether the combination of the
high hydrothermal input of <inline-formula><mml:math id="M264" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and strong aggregation
(modelled as a high settling velocity), is needed to obtain an accurate
representation of the distribution of <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, i.e. one where the
predicted concentrations compare well with the observed concentrations.
Specifically, we want to explain the sharp observed Mn plumes.
To this end, we first decreased the settling velocity to a constant
1 <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (or, equivalently,
<inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub><mml:mo>→</mml:mo><mml:mi mathvariant="normal">∞</mml:mi></mml:mrow></mml:math></inline-formula>), which, as expected, resulted in a
wide spreading of <inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and a too high <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
almost everywhere in the deep ocean (not presented).
Decreasing only hydrothermal input would trivially result in a proportionally
smaller <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> near the vents.
For this reason <italic>LowHydro</italic> contains two changes compared to the
<italic>Reference</italic> simulation: a tenfold decrease in both the hydrothermal flux
and the maximum settling velocity.</p>
      <p>In our fourth simulation, <italic>NoThreshold</italic>, we want to see if an aggregation
threshold is needed for an accurate <inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> simulation.
The threshold is removed by setting <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in
Eq. (<xref ref-type="disp-formula" rid="Ch1.E11"/>) to zero.</p>
      <p>The fifth and final simulation, <italic>OxidThreshold</italic>, is one that has a
threshold in the oxidation process instead of the particle sinking, setting effectively
a minimum concentration of dissolved Mn.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Model validation</title>
      <p>In this study we mainly use data from the GEOTRACES programme, but
for a worldwide global ocean comparison one also has to rely on data
that were collected in the era before the reference samples of SAFe and
GEOTRACES were available.
Table <xref ref-type="table" rid="Ch1.T5"/> lists the datasets from GEOTRACES expeditions,
as well as several other
datasets; Fig. <xref ref-type="fig" rid="Ch1.F5"/> shows the coordinates of the stations.</p>
      <p>Most of these <ext-link xlink:href="http://www.geotraces.org/">GEOTRACES</ext-link> datasets are
part of the publicly available
<ext-link xlink:href="http://www.bodc.ac.uk/geotraces/data/idp2014/">GEOTRACES
Intermediate Data Product (IDP) 2014</ext-link> <xref ref-type="bibr" rid="bib1.bibx70" id="paren.109"/>, except for GP16
<xref ref-type="bibr" rid="bib1.bibx90" id="paren.110"/> that will be released as part of the
<ext-link xlink:href="http://www.geotraces.org/dp/intermediate-data-product-2017">GEOTRACES
IDP 2017</ext-link>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5" specific-use="star"><caption><p>Observational <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> used for comparison with the model simulations.
GEOTRACES datasets are indicated by GEOTRACES transect codes.
Their accuracies are approved by GEOTRACES on the basis of results
of reference samples and cross-over stations.
At the time there were no reference samples available for the other
datasets, or they were not used for Mn.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Transect</oasis:entry>  
         <oasis:entry colname="col2">Year</oasis:entry>  
         <oasis:entry colname="col3">Expedition</oasis:entry>  
         <oasis:entry colname="col4">Ocean basin</oasis:entry>  
         <oasis:entry colname="col5">Citation</oasis:entry>  
         <oasis:entry colname="col6">#</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col6">GEOTRACES transects </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GIPY11</oasis:entry>  
         <oasis:entry colname="col2">2007</oasis:entry>  
         <oasis:entry colname="col3">ARK XXII/2</oasis:entry>  
         <oasis:entry colname="col4">Arctic Ocean</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx77" id="text.111"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">773</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GIPY4</oasis:entry>  
         <oasis:entry colname="col2">2008</oasis:entry>  
         <oasis:entry colname="col3">MD166 BONUS-GoodHope</oasis:entry>  
         <oasis:entry colname="col4">Southern Ocean</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx13" id="text.112"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">233</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GIPY5</oasis:entry>  
         <oasis:entry colname="col2">2008</oasis:entry>  
         <oasis:entry colname="col3">ANT XXIV/3</oasis:entry>  
         <oasis:entry colname="col4">Southern Ocean</oasis:entry>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">a) Zero Meridian</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx76" id="text.113"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">468</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">b) Weddell Sea</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx79" id="text.114"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">176</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">c) Drake Passage</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx78" id="text.115"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">221</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GI04</oasis:entry>  
         <oasis:entry colname="col2">2009/2010</oasis:entry>  
         <oasis:entry colname="col3">KH-09-5</oasis:entry>  
         <oasis:entry colname="col4">Indian Ocean</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx123" id="text.116"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">233</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GA02</oasis:entry>  
         <oasis:entry colname="col2">2010</oasis:entry>  
         <oasis:entry colname="col3">64 PE 319</oasis:entry>  
         <oasis:entry colname="col4">Northwest Atlantic Ocean</oasis:entry>  
         <oasis:entry colname="col5">this study</oasis:entry>  
         <oasis:entry colname="col6">384</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GA02</oasis:entry>  
         <oasis:entry colname="col2">2010</oasis:entry>  
         <oasis:entry colname="col3">64 PE 321</oasis:entry>  
         <oasis:entry colname="col4">Northwest Atlantic Ocean</oasis:entry>  
         <oasis:entry colname="col5">this study</oasis:entry>  
         <oasis:entry colname="col6">504</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GA02</oasis:entry>  
         <oasis:entry colname="col2">2011</oasis:entry>  
         <oasis:entry colname="col3">JC 057</oasis:entry>  
         <oasis:entry colname="col4">Southwest Atlantic Ocean</oasis:entry>  
         <oasis:entry colname="col5">this study</oasis:entry>  
         <oasis:entry colname="col6">432</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GA03</oasis:entry>  
         <oasis:entry colname="col2">2010</oasis:entry>  
         <oasis:entry colname="col3">US GT10</oasis:entry>  
         <oasis:entry colname="col4">North Atlantic</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx125" id="text.117"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">91</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">GA03</oasis:entry>  
         <oasis:entry colname="col2">2011</oasis:entry>  
         <oasis:entry colname="col3">US GT11</oasis:entry>  
         <oasis:entry colname="col4">North Atlantic</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx125" id="text.118"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">578</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">GP16</oasis:entry>  
         <oasis:entry colname="col2">2013</oasis:entry>  
         <oasis:entry colname="col3">US EPZT</oasis:entry>  
         <oasis:entry colname="col4">South Pacific</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx90" id="text.119"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">874</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col6">Other expeditions and datasets </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">–</oasis:entry>  
         <oasis:entry colname="col2">1983</oasis:entry>  
         <oasis:entry colname="col3">VERTEX-IV</oasis:entry>  
         <oasis:entry colname="col4">North Pacific Ocean</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx56" id="text.120"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">27</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">–</oasis:entry>  
         <oasis:entry colname="col2">2006</oasis:entry>  
         <oasis:entry colname="col3">EUCFe (RV <italic>Kilo Moana</italic>)</oasis:entry>  
         <oasis:entry colname="col4">Pacific Ocean</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx101" id="text.121"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">349</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">–</oasis:entry>  
         <oasis:entry colname="col2">2005/2006</oasis:entry>  
         <oasis:entry colname="col3">CLIVAR P16</oasis:entry>  
         <oasis:entry colname="col4">Pacific Ocean</oasis:entry>  
         <oasis:entry colname="col5">Milne and Landing (unpublished data)</oasis:entry>  
         <oasis:entry colname="col6">174</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">–</oasis:entry>  
         <oasis:entry colname="col2">2007</oasis:entry>  
         <oasis:entry colname="col3">CoFeMUG</oasis:entry>  
         <oasis:entry colname="col4">South Atlantic</oasis:entry>  
         <oasis:entry colname="col5">
                    <xref ref-type="bibr" rid="bib1.bibx86" id="text.122"/>
                  </oasis:entry>  
         <oasis:entry colname="col6">429</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry namest="col1" nameend="col5">Total number of dissolved Mn measurements: </oasis:entry>  
         <oasis:entry colname="col6">5742</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p><?xmltex \hack{\newpage}?>These observations are used for a visual global ocean data–model comparison.
Details on the statistical and visual model–data comparison are presented in
Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>.
Of these observations, only the west Atlantic Ocean data (the GEOTRACES GA02
transect, consisting of 64 PE 319,
PE 321 and JC 057; 1320 points) and the Zero-Meridian Southern Ocean data
(GIPY5; 468 points) have been used for statistical comparison with the model.
Moreover, only the data of the shipboard FIA have
been used, which have five stations fewer than the on-shore mass spectrometry
determinations (ICP-MS having 120 more measurements, thus 1440 in total).
The focus of this study is the west Atlantic Ocean for several reasons.
Firstly, recent measurements have been carried out in that region,
resulting in a large consistent (one-method) dataset.
Other regions generally contain fewer measurements and are mainly based on
different methods by different analysts.
Secondly, the west Atlantic Ocean is of importance to the Atlantic
meridional overturning circulation, and hence the deep ocean cycling of for
example the major nutrients.
Therefore the west Atlantic Ocean was chosen as a key site for the
<inline-formula><mml:math id="M274" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 18 000 <inline-formula><mml:math id="M275" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> long GEOTRACES GA02 transect for the
collection of data for dissolved Mn and a suite of other trace elements and
isotopes.
The GEOTRACES GIPY5 transect at the Zero Meridian in the Southern Ocean
complements the GA02 transect up to Antarctica, giving a more complete picture
of the ocean circulation.
For these reasons in this study we focus on the GA02 and GIPY5 transects.</p>
      <p>The particulate <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> measurements from <xref ref-type="bibr" rid="bib1.bibx56" id="text.123"/>
were used to tune the redox model.
The data from the CLIVAR P16 cruise are unpublished; sampling is from the
surface up to 1000 <inline-formula><mml:math id="M277" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> depth; its methods of analysis
are described by <xref ref-type="bibr" rid="bib1.bibx83" id="text.124"/>.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Observations in the west Atlantic Ocean</title>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Observations of <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) along the
GEOTRACES GA02 transect in the west Atlantic Ocean.
Dots are the locations of the measurements.
Upper 500 m.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f06.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Observations of <inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) along the
GEOTRACES GA02 transect in the west Atlantic Ocean.
The dots denote the locations of the measurements.
Below 500 m.
The red, dashed lines indicate samples with high dissolved
iron concentrations after <xref ref-type="bibr" rid="bib1.bibx91" id="text.125"/>.
Similarly, the blue, dashed lines represent high dissolved aluminium
concentrations, and are after <xref ref-type="bibr" rid="bib1.bibx80" id="text.126"/>.
Note that the concentrations are generally much smaller than in the
surface, and that the colour scale is different from that of
Fig. <xref ref-type="fig" rid="Ch1.F6"/>.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f07.png"/>

        </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F6"/> shows the west Atlantic GEOTRACES transect at
the top 500 m.
The concentration of <inline-formula><mml:math id="M280" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> near the ocean surface is high, going
up to 4 <inline-formula><mml:math id="M281" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> and beyond.
The highest surface concentrations are observed in the regions of high dust
deposition, as previously observed for aluminium <xref ref-type="bibr" rid="bib1.bibx80" id="paren.127"/> and
consistent with dust as the main source of Mn to the surface open ocean.
The <inline-formula><mml:math id="M282" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution is mainly homogeneous in the intermediate
and deep ocean, where dissolved Mn has a concentration of about
0.10 to 0.15 <inline-formula><mml:math id="M283" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>.</p>
      <p>North of 40<inline-formula><mml:math id="M284" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, high concentrations of dissolved Mn reach deeper than
the top couple of hundred metres, apparently because of vertical mixing.
As can be seen in Fig. <xref ref-type="fig" rid="Ch1.F7"/>, some of it seems to go all the way
down to about 3000 m.
However, other sources may be (partly) responsible as well, including
advection from diffusive sediments and hydrothermal vents.
By plotting all deep waters at enhanced resolution of concentration
(Fig. <xref ref-type="fig" rid="Ch1.F7"/>), the Mn maxima of hydrothermal plumes and the
<inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> minimum zones are more discernible.
Since Mn and Fe have a very similar redox chemistry in the oceans, not
surprisingly the maxima of Mn and Fe <xref ref-type="bibr" rid="bib1.bibx91" id="paren.128"/> generally overlap
(the red dashed and black solid ellipses in Fig. <xref ref-type="fig" rid="Ch1.F7"/>).
Some of the Mn may be transported southwards by North Atlantic Deep Water (NADW),
but this cannot be deduced from this transect: already around 35<inline-formula><mml:math id="M286" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N,
<inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> approaches near-constant deep background concentrations
such that the NADW plume is no longer discernible.
Similarly, at about 35<inline-formula><mml:math id="M288" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, around 1000 m depth, we observe elevated
concentrations in the northward advecting Antarctic Intermediate Water (AAIW),
but once again concentrations already reach the typical background concentration
around 20<inline-formula><mml:math id="M289" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.
In the Northern Hemisphere, the subsurface waters underlying the high dust
deposition region near the Equator have relatively elevated <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
concentrations down to 750–1000 m depth, implying some influence of the dust
deposition and particle export on the subsurface Mn concentrations, but yet
again, the typical background concentration is reached further down.
Elevated local features are located at almost 2 <inline-formula><mml:math id="M291" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> depth on the
Zero Meridian at 50<inline-formula><mml:math id="M292" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S <xref ref-type="bibr" rid="bib1.bibx76" id="paren.129"><named-content content-type="post">their Fig. 2; also presented as dots from
52<inline-formula><mml:math id="M293" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S on our Fig. <xref ref-type="fig" rid="Ch1.F9"/></named-content></xref>
and almost 3 <inline-formula><mml:math id="M294" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> depth in the west Atlantic transect at, and just south
of, the Equator, and at the Denmark Strait overflow (Fig. <xref ref-type="fig" rid="Ch1.F7"/>).
The elevated Mn in the Denmark Strait Overflow Water (DSOW) for a small part coincides with
elevated aluminium attributed to sediment resuspension
<xref ref-type="bibr" rid="bib1.bibx119 bib1.bibx80" id="paren.130"/>.
However, there is a mismatch between the highest Al concentrations observed
around 45<inline-formula><mml:math id="M295" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and the highest Mn in the northernmost part of the transect
<xref ref-type="bibr" rid="bib1.bibx80" id="paren.131"/>.
This implies the source of Mn is related to the DSOW rather than the sediment
resuspension occurring while the DSOW advects into the North Atlantic Ocean.
The elevated deep Mn at the other locations match with elevated Fe and is most
likely of hydrothermal origin <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx36" id="paren.132"/>.
Finally, at low latitudes, in the very deep ocean, <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
decreases with depth, suggesting a slower circulation in that region or an
additional and/or enforced export of Mn to the sediment.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Reference simulation</title>
      <p>After 600 years, both the upper 100 m and the deep ocean relative Mn
content changed by less than 25 ppm over a period of 10 years in the
<italic>Reference</italic> simulation.
This is about a factor of 4 less compared to the decadal change of 100 years ago.
The small and reducing drift suggests that the simulation is practically in a
steady state.
Model output data are available on <ext-link xlink:href="https://doi.org/10.1594/PANGAEA.871981">PANGAEA</ext-link>
<xref ref-type="bibr" rid="bib1.bibx120" id="paren.133"/>.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F8"/> shows the modelled and measured dissolved Mn
concentrations at four depths; observations are shown as coloured dots (same scale).
The dissolved Mn concentration is high in the surface of the Atlantic, Indian
and Arctic oceans, mostly consistent with the observations
(Fig. <xref ref-type="fig" rid="Ch1.F8"/>a).
The model also reproduces the latitudinal gradient of <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in
the Atlantic and Indian oceans, reflecting
dust deposition patterns (Fig. <xref ref-type="fig" rid="Ch1.F4"/>a).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p><inline-formula><mml:math id="M298" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) at four depth layers in the
world ocean for the reference simulation (<italic>Reference</italic>) after 500 <inline-formula><mml:math id="M299" display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula>
(annual average).
Observations are presented as coloured dots; white is the land mask of
the model grid.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f08.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p><inline-formula><mml:math id="M300" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) at the Zero-Meridian section
component of the GIPY5 dataset, and the
west Atlantic GA02 GEOTRACES transects for <italic>Reference</italic> after
500 <inline-formula><mml:math id="M301" display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula> (annual average).
Observations are presented as coloured dots.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f09.pdf"/>

        </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F9"/> shows the dissolved Mn concentrations
at full depth in the Zero-Meridian Southern Ocean and the west Atlantic Ocean
from the <italic>Reference</italic> simulation; observations are shown as coloured dots.
Lower concentrations in the deep ocean are
reproduced by the model (Figs. <xref ref-type="fig" rid="Ch1.F8"/>b–d
and <xref ref-type="fig" rid="Ch1.F9"/>).
Both the model and observations present a mainly homogeneous distribution of
just over 0.1 <inline-formula><mml:math id="M302" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>, though there are a number of sub-0.1 <inline-formula><mml:math id="M303" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>
measurements in the polar oceans.
The <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are generally higher near the surface
compared to the deep ocean, both in the observations and the model.
This is caused by a combination of dust deposition and photoreduction.
Also the penetration of <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from Mn-rich surface waters into the deep ocean
at around 50<inline-formula><mml:math id="M306" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N is reproduced by the model, but this is scavenged quickly
before traversing southward in the NADW,
which is consistent with early studies <xref ref-type="bibr" rid="bib1.bibx9" id="paren.134"><named-content content-type="pre">e.g.</named-content></xref>.
Finally, the <italic>Reference</italic> simulation reproduces the measurements near
hydrothermal vents in the Atlantic and Indian oceans
(Figs. <xref ref-type="fig" rid="Ch1.F8"/>c and <xref ref-type="fig" rid="Ch1.F9"/>).</p>
      <p>Still, at many places, the <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration is
underestimated by the model, with the most notable exceptions of the Southern
and Arctic oceans.
The underestimation is especially pronounced at the surface of the
Pacific Ocean (Fig. <xref ref-type="fig" rid="Ch1.F8"/>a).
Furthermore, in the model the Mn-rich water from the Amazon does not reach the
GA02 transect as opposed to the observations.
This potentially explains the underestimated concentration of <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
in that region.
The simulation overestimates measured <inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in the Arctic
Ocean, except for some coordinates like near the Gakkel Ridge (the dark red dot
in Fig. <xref ref-type="fig" rid="Ch1.F8"/>c at 90<inline-formula><mml:math id="M310" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E) <xref ref-type="bibr" rid="bib1.bibx77" id="paren.135"/>.
The Gakkel Ridge is not in our hydrothermal forcing field (Fig. <xref ref-type="fig" rid="Ch1.F4"/>d).</p>
      <p><?xmltex \hack{\newpage}?>Figure <xref ref-type="fig" rid="Ch1.F10"/> presents <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> of
the GA03 west to east transect.
Observations from <xref ref-type="bibr" rid="bib1.bibx125" id="text.136"/> are presented as coloured dots.
Again, the general patterns are captured, but the concentration of
<inline-formula><mml:math id="M312" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> very close to the Mid-Atlantic Ridge is underestimated,
while above the ridge (at about 2–3 km depth) it is overestimated.
In other words, the modelled hydrothermal <inline-formula><mml:math id="M313" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> gradient is not
as sharp as in the observations.
It is difficult to improve this feature because of the low vertical model
resolution at that depth.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p><inline-formula><mml:math id="M314" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) at the North Atlantic GA03
GEOTRACES transect for <italic>Reference</italic> after 600 <inline-formula><mml:math id="M315" display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula>
(annual average).
Observations are presented as coloured dots.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f10.pdf"/>

        </fig>

      <p>To more objectively compare the different simulations to each other, we list
several goodness-of-fit statistics in Table <xref ref-type="table" rid="Ch1.T6"/>.
They compare the model simulations to observational data from the
GEOTRACES GA02 transect.
The model–data <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> Pearson correlation coefficient <inline-formula><mml:math id="M317" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> has
a value of 0.78 for the <italic>Reference</italic> simulation.
The reliability index, the average factor by which model predictions differ
from observations, shows that on average the model differs by a factor of
1.76 from observations <xref ref-type="bibr" rid="bib1.bibx106" id="paren.137"><named-content content-type="post">and Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/></named-content></xref>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T6" specific-use="star"><caption><p>Statistical model–data comparison for <inline-formula><mml:math id="M318" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at the
GEOTRACES west Atlantic GA02 transect.
The significance errors in the entries of <italic>Reference</italic> are <inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">σ</mml:mi></mml:mrow></mml:math></inline-formula> from
Monte Carlo samplings (Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>).
Bold-face values denote significant worsening compared with <italic>Reference</italic>;
deviations of other values from the <italic>Reference</italic> value are insignificant.
The last two columns are the total modelled Mn in seawater, and the
Mn oxides as a portion of the total.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left" colsep="1"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Simulation</oasis:entry>  
         <oasis:entry colname="col2">Correlation</oasis:entry>  
         <oasis:entry colname="col3">RMS deviation (<inline-formula><mml:math id="M320" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">Reliability index</oasis:entry>  
         <oasis:entry colname="col5">Mn (<inline-formula><mml:math id="M321" display="inline"><mml:mi mathvariant="normal">Gmol</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6">Percentage <inline-formula><mml:math id="M322" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>Reference</italic></oasis:entry>  
         <oasis:entry colname="col2">0.78 (<inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3">0.46 (<inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">1.76 (<inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">440</oasis:entry>  
         <oasis:entry colname="col6">14.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>NoBio</italic></oasis:entry>  
         <oasis:entry colname="col2">0.79 (<inline-formula><mml:math id="M326" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3">0.45 (<inline-formula><mml:math id="M327" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">1.76 (<inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">409</oasis:entry>  
         <oasis:entry colname="col6">14.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>LowHydro</italic></oasis:entry>  
         <oasis:entry colname="col2"><bold>0.64</bold> (<inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.07</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3"><bold>0.60</bold> (<inline-formula><mml:math id="M330" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4"><bold>2.90</bold> (<inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">1023</oasis:entry>  
         <oasis:entry colname="col6">15.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>NoThreshold</italic></oasis:entry>  
         <oasis:entry colname="col2">0.78 (<inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3">0.46 (<inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4"><bold>2.03</bold> (<inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.11</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">373</oasis:entry>  
         <oasis:entry colname="col6">13.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>OxidThreshold</italic></oasis:entry>  
         <oasis:entry colname="col2">0.78 (<inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3">0.46 (<inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">1.82 (<inline-formula><mml:math id="M337" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.09</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">405</oasis:entry>  
         <oasis:entry colname="col6">12.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS3">
  <title>Biological cycle disabled</title>
      <p>As Mn plays an important role as a trace nutrient, it is likely that biology has an
impact on <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at the ocean surface.
Therefore, a simulation has been performed where biological incorporation and
remineralisation of <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was not included, henceforth named
<italic>NoBio</italic>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p>The effect of biological incorporation on <inline-formula><mml:math id="M340" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
at four depths: <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext mathvariant="italic">Reference</mml:mtext><mml:mo>-</mml:mo><mml:mtext mathvariant="italic">NoBio</mml:mtext><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mtext mathvariant="italic">NoBio</mml:mtext></mml:mrow></mml:math></inline-formula>.
Grey is the land mask of the model domain; the black contour is that of the real
continental coasts.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f11.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><caption><p>Annual average of <inline-formula><mml:math id="M342" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) at two depths in the
world ocean for the simulation without a Mn biological cycle (<italic>NoBio</italic>)
of year 500 after forking from <italic>Reference</italic>.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f12.png"/>

        </fig>

      <p>Across much of the surface
ocean, the biological cycle of Mn in <italic>Reference</italic> causes a notable decrease
of <inline-formula><mml:math id="M343" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> compared to <italic>NoBio</italic>, though in the Pacific
Ocean there is an increase at around 20<inline-formula><mml:math id="M344" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and especially around
20<inline-formula><mml:math id="M345" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S (Fig. <xref ref-type="fig" rid="Ch1.F11"/>).
The decrease in the Pacific Ocean is up to 100 % near the Equator and up to
80 % at 40<inline-formula><mml:math id="M346" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.
In the Atlantic Ocean, <inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> has not changed much between the
two model simulations, explaining the insignificant change in the model–data
comparison (Table <xref ref-type="table" rid="Ch1.T6"/>).
Deeper in the Pacific Ocean, <inline-formula><mml:math id="M348" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is higher in
<italic>Reference</italic> compared to <italic>NoBio</italic>.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F12"/> shows <inline-formula><mml:math id="M349" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> of the model
compared with the observations at two depths for the <italic>NoBio</italic> simulation.
The changes between the simulations are only big in the Pacific Ocean
(Fig. <xref ref-type="fig" rid="Ch1.F12"/>).
Elsewhere biology does not appear to have a big effect on the
<inline-formula><mml:math id="M350" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration.
At the surface of the equatorial Pacific Ocean, concentrations are higher in the
<italic>NoBio</italic> simulation.
Since in <italic>Reference</italic> <inline-formula><mml:math id="M351" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is too low compared to the
US East Pacific Zonal Transect (EPZT) (GP16), <italic>NoBio</italic> compares better
with the observations.
Deeper in the Pacific Ocean, <italic>Reference</italic> has higher
<inline-formula><mml:math id="M352" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, and hence is better than in <italic>NoBio</italic>.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Hydrothermal flux and export reduced</title>
      <p>We have shown that the <italic>Reference</italic> simulation gives an adequate
representation of the effects of hydrothermal vents and the background
concentration in the deep ocean.
This is achieved by setting a large <inline-formula><mml:math id="M353" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> flux from hydrothermal
vents and a big maximum settling velocity at the depth of the vents to remove
the hydrothermal Mn away from the source.
The simulation presented in this section, <italic>LowHydro</italic>, is meant to test if
the high flux is necessary for an accurately modelled <inline-formula><mml:math id="M354" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><caption><p>Result from the simulation with hydrothermal vent Mn input
decreased and settling velocity decreased (<italic>LowHydro</italic>).
Relative difference in <inline-formula><mml:math id="M355" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (%) between <italic>Reference</italic>
and <italic>LowHydro</italic>: (<italic>LowHydro</italic>–<italic>Reference</italic>)/<italic>Reference</italic>.
To represent the changes of much larger than 100 %, the scale is
increased from <inline-formula><mml:math id="M356" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>50 % upwards.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f13.png"/>

        </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F13"/> shows the relative change
in <inline-formula><mml:math id="M357" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at four depths when both the hydrothermal
input and the maximum settling velocity are decreased by a factor of 10
(<italic>LowHydro</italic>).
In the surface ocean (Fig. <xref ref-type="fig" rid="Ch1.F13"/>a)
there are both moderate increases and decreases.
However, there are very
large increases in places with deep convection that connect with the deep ocean
(over 500 % in the Weddell Sea).
In the deep ocean below about 1 <inline-formula><mml:math id="M358" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> depth, such a large
increase is not limited to the Weddell Sea but stretches over much of
the Atlantic and Indian oceans (Fig. <xref ref-type="fig" rid="Ch1.F13"/>c and d).
Exceptions are the locations near the oceanic ridges, where there is
hydrothermal activity.
At those locations <inline-formula><mml:math id="M359" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> decreased by up to 80 %.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><caption><p><inline-formula><mml:math id="M360" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (nM) from the simulation with
hydrothermal vent Mn input decreased and settling velocity decreased
(<italic>LowHydro</italic>)
at the west Atlantic GA02 and at the Southern Ocean Zero-Meridian part of the
GIPY5 GEOTRACES transects.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f14.pdf"/>

        </fig>

      <p>The <inline-formula><mml:math id="M361" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> transects in Fig. <xref ref-type="fig" rid="Ch1.F14"/> show that
<italic>LowHydro</italic> performs worse than the <italic>Reference</italic> simulation.
For instance, the high <inline-formula><mml:math id="M362" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> with a clear hydrothermal
origin at 54<inline-formula><mml:math id="M363" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S has disappeared, while at the same time the deep
ocean filled up with <inline-formula><mml:math id="M364" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, resulting in a consistent
overestimation of about a factor of 5 in most of the deep west
Atlantic Ocean.
In the South Pacific Ocean and the Indian Ocean the signature of hydrothermal
input of <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is – though smaller and worse than in <italic>Reference</italic>
– still clearly present, with <inline-formula><mml:math id="M366" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> values
near the ridges distinctly different from the “background” concentration
(results not presented).
Furthermore, the statistics on the points at the west Atlantic GA02
transect of <italic>LowHydro</italic> compared to <italic>Reference</italic> unambiguously
show that <inline-formula><mml:math id="M367" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> worsened (Table <xref ref-type="table" rid="Ch1.T6"/>).
The <italic>LowHydro</italic> simulation is significantly worse in all three statistics:
the gradients from hydrothermal vents have disappeared, and
<inline-formula><mml:math id="M368" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is much too high throughout the ocean compared to
<italic>Reference</italic>.</p>
</sec>
<sec id="Ch1.S3.SS5">
  <title>Aggregation threshold disabled</title>
      <p>The simulation <italic>NoThreshold</italic> does not impose the aggregation threshold,
meaning that settling is unconstrained in this simulation.
Figure <xref ref-type="fig" rid="Ch1.F15"/> presents <inline-formula><mml:math id="M369" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
from <italic>NoThreshold</italic> at the GA02 and GIPY5 transects.
In the intermediate and deep ocean south of 40<inline-formula><mml:math id="M370" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N the concentration of
<inline-formula><mml:math id="M371" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is generally more than 50 % smaller than that in
<italic>Reference</italic> (Fig. <xref ref-type="fig" rid="Ch1.F9"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15" specific-use="star"><caption><p>[Mn<inline-formula><mml:math id="M372" display="inline"><mml:msub><mml:mi/><mml:mtext>diss</mml:mtext></mml:msub></mml:math></inline-formula>] (nM) at the west Atlantic GA02 and at the Southern
Ocean Zero Meridian part of the GIPY5 GEOTRACES transects.
Simulation without threshold (<italic>NoThreshold</italic>).
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f15.pdf"/>

        </fig>

      <p>The homogeneous, already low background concentration of <inline-formula><mml:math id="M373" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
is reduced to close to zero (at least in the deep South Atlantic Ocean), while
the hydrothermal signals are still correctly represented in the
<italic>NoThreshold</italic> simulation.
This explains that neither the correlation coefficient nor the root-mean-square
deviation, based on the west Atlantic GA02 data, of <inline-formula><mml:math id="M374" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in
<italic>NoThreshold</italic> differ significantly from those of <italic>Reference</italic>.
This means that away from ocean ridges the spatial variation of the modelled
<inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is similar to that of the observations <xref ref-type="bibr" rid="bib1.bibx106" id="paren.138"/>.
However, the reliability index, the average factor by which model predictions
differ from observations, here also based on the GA02 data, has changed from
1.76 to 2.03, a change that is significant by six standard deviations
(Table <xref ref-type="table" rid="Ch1.T6"/>).
Therefore, the <italic>NoThreshold</italic> simulation is much worse than the
<italic>Reference</italic> simulation.</p>
</sec>
<sec id="Ch1.S3.SS6">
  <title>Oxidation threshold enabled</title>
      <p>As a final simulation, we limited the oxidation, rather than the settling of the
manganese oxides.
The resulting dissolved Mn concentrations are similar to those of
<italic>Reference</italic> which has an aggregation threshold.
Figure <xref ref-type="fig" rid="Ch1.F16"/> shows the
<inline-formula><mml:math id="M376" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M377" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula><inline-formula><mml:math id="M378" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration ratio of the
two simulations as well as observations at (155<inline-formula><mml:math id="M379" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W, 28<inline-formula><mml:math id="M380" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N).
The blue squares represent the ratios between the particulate and dissolved Mn
measurements taken during the VERTEX-IV cruise <xref ref-type="bibr" rid="bib1.bibx17" id="paren.139"/>.
The left panel shows that this ratio lies near 0.005 in the upper
100 <inline-formula><mml:math id="M381" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, and the right panel shows the deep ocean that has higher
values.
The green line is the <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration
ratio from the <italic>Reference</italic> simulation, and the red, dashed line is the
<italic>OxidThreshold</italic> simulation.
For the <italic>Reference</italic> simulation,
the modelled <inline-formula><mml:math id="M383" display="inline"><mml:mrow><mml:mi mathvariant="script">X</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="script">D</mml:mi></mml:mrow></mml:math></inline-formula> generally lies at
the lower end of the observed ratio, while only between 200 and 400 m are particles
overestimated compared to dissolved Mn.
Whereas in the upper 100 <inline-formula><mml:math id="M384" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> of the ocean both simulations are
consistent with those from the VERTEX-IV cruise, in the deep ocean only the
<italic>Reference</italic> simulation compares well with the observations.
In <italic>OxidThreshold</italic> the ratio is underestimated.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16"><caption><p><inline-formula><mml:math id="M385" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in the
Pacific Ocean at the VERTEX-IV station in the upper 110 m (left)
and at full depth (right).
Blue squares are observations, the green line is the <italic>Reference</italic>
simulation, and the red dashed line is the ratio from <italic>OxidThreshold</italic>.
</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f16.pdf"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
      <p>Many of the features of the <inline-formula><mml:math id="M386" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution in the
world ocean are reproduced by our <italic>Reference</italic> simulation
(Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>).
However, some discussion on the assumptions of the underlying processes in the
model is required.</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S4.SS1">
  <title>Margin sediments</title>
      <p>We have chosen to use a simple sediment flux parameterisation for this study.
In our model, <inline-formula><mml:math id="M387" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is added to bottom water from anoxic
sediments analogously to the iron flux in the model PISCES
<xref ref-type="bibr" rid="bib1.bibx3" id="paren.140"/>.</p>
      <p>On the one hand, our model may underestimate the flux.
In fact, with Mn reduction a larger free energy is released compared to
Fe reduction, so that Mn oxides reduce more easily <xref ref-type="bibr" rid="bib1.bibx32" id="paren.141"/>.
Furthermore, high benthic Mn fluxes have been observed from eastern North
Pacific marine sediments <xref ref-type="bibr" rid="bib1.bibx72" id="paren.142"/>.
On the other hand, at some large-shelf regions, like in parts of the Arctic
Ocean, the Mn flux is overestimated, because the low model resolution does not
handle shelf regions well.
This problem is similar for iron <xref ref-type="bibr" rid="bib1.bibx3" id="paren.143"><named-content content-type="post">their Fig. 8c, d</named-content></xref>.</p>
      <p><xref ref-type="bibr" rid="bib1.bibx102" id="text.144"/> measured pore water concentrations of dissolved Fe and Mn.
The <inline-formula><mml:math id="M388" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow></mml:math></inline-formula> ratios based on their pore water concentrations typically range from
0.2 to 0.5, but sometimes up to 2.5.
The reduction rate found by their reaction–diffusion model yields a <inline-formula><mml:math id="M389" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow></mml:math></inline-formula>
reduction rate ratio of 0.02 to 0.2.
<xref ref-type="bibr" rid="bib1.bibx7" id="text.145"/> reports fluxes from sediment to bottom water of dissolved Mn
and Fe that yield an average ratio of 0.5.
The value that we used, 0.2, lies between the intermediate and lower
end of the reported values.
This choice is mainly due to the fact that the crude iron flux parameterisation
results in increases of the Mn flux that are out of proportion in some regions
of the ocean, like the eastern Arctic Ocean and the Indonesian throughflow.
This is a known shortcoming of this parameterisation that can also be seen in the
modelled iron distribution <xref ref-type="bibr" rid="bib1.bibx111" id="paren.146"/>.
In the Arctic Ocean, a higher sedimentary Mn input would induce an even stronger
overestimation than it already does with <inline-formula><mml:math id="M390" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Fe</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>
(Fig. <xref ref-type="fig" rid="Ch1.F4"/>c).
The shortcoming had also been concluded by <xref ref-type="bibr" rid="bib1.bibx118" id="text.147"/> who presented a
sensitivity study that used the same parameterisation for aluminium sediment
input as for Mn here.</p>
      <p>Nevertheless, a higher <inline-formula><mml:math id="M391" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> input would be beneficial for the
simulation in the Atlantic, and especially the Pacific
Ocean, where
<inline-formula><mml:math id="M392" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is underestimated everywhere but south of
50<inline-formula><mml:math id="M393" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S.
This general underestimation may be due to underestimation of the enhanced
dissolved Mn as previously measured in coastal upwelling regions and their
underlying OMZs.
Reports of elevated dissolved Mn in major Pacific coastal upwelling regions are
in the California Current of the northeast Pacific
<xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx21" id="paren.148"/>, and the Peru Current (also known as the Humboldt Current) of the southeast
Pacific (GP16, <xref ref-type="bibr" rid="bib1.bibx90 bib1.bibx39" id="altparen.149"/>).
The mobilisation of Mn in these two Pacific upwelling systems is comparable to
the elevated dissolved Mn in two other classical upwelling systems, off Namibia
in the southeast Atlantic (CoFeMUG, <xref ref-type="bibr" rid="bib1.bibx86" id="altparen.150"/>), and in the northwest
Indian Ocean (GI04, <xref ref-type="bibr" rid="bib1.bibx96 bib1.bibx123" id="altparen.151"/>).
Indeed in the surface waters (Fig. <xref ref-type="fig" rid="Ch1.F8"/>a) the model does
predict elevated dissolved Mn off California and off Peru, but simulated
concentrations in the <inline-formula><mml:math id="M394" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.6</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M396" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> range are lower
than measured values up to 4 or even 10 nM off California, and up to <inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3.4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M398" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> off Peru (Fig. <xref ref-type="fig" rid="Ch1.F8"/>a).
Otherwise off Namibia there appears to be more agreement between the simulated
and the measured dissolved Mn in surface waters.
The upwelling regions are also characterised by an extensive OMZ in the subsurface
waters.
In the eastern Pacific a tongue of very low dissolved <inline-formula><mml:math id="M399" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is most apparent
at around 300 m depth <xref ref-type="bibr" rid="bib1.bibx39" id="paren.152"><named-content content-type="post">their Fig. 1</named-content></xref> and would yield
elevated dissolved Mn.
In our model at the 500 m depth horizon (Fig. <xref ref-type="fig" rid="Ch1.F8"/>b)
this is indeed seen off California and off Namibia, but is not reproduced very well
off Peru where some higher measured Mn up to <inline-formula><mml:math id="M400" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 nM was in fact observed.
The very low dissolved <inline-formula><mml:math id="M401" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and high dissolved Mn in these OMZ waters
lead to strong spatial gradients, and a more fine resolution of the model in
upwelling and OMZ regions would be required.</p>
      <p>To summarise, we had chosen to use a simple sediment flux parameterisation,
which is not completely adequate for representing <inline-formula><mml:math id="M402" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> fluxes
from OMZ sediments.
For future work a finer regional resolution of the model in upwelling and/or OMZ
regions, better parameterisation or even an explicit sediment submodel should
be taken into consideration.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Biological cycle</title>
<sec id="Ch1.S4.SS2.SSS1">
  <title>General discussion and the GIPY5 transect</title>
      <p>Our model includes biological processes involving manganese in a way very similar to
that of phosphorus, but the rate variables are multiplied by a typical <inline-formula><mml:math id="M403" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:math></inline-formula> ratio
based on the measured plankton content ratio.
We had chosen to follow all phosphorus cycling as described by <xref ref-type="bibr" rid="bib1.bibx3" id="text.153"/> for
consistency reasons.
We did not want to evaluate all potential details of biology but rather
take a simple approach.</p>
      <p>At this stage, we lack observational constraints allowing us to develop a more
complex representation of the biological Mn cycle.
Specifically, even though in the upper waters of the Southern Ocean the uptake and
remineralisation cycle of <inline-formula><mml:math id="M404" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> correlates well with the
nutrients <inline-formula><mml:math id="M405" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M406" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx76" id="paren.154"/>, there
is no mechanistic evidence for how exactly the uptake–remineralisation process
should work for Mn.
Of course, Mn plays an important role in biology
<xref ref-type="bibr" rid="bib1.bibx22 bib1.bibx76 bib1.bibx79 bib1.bibx15" id="paren.155"/>.
Whereas the trace nutrient iron often appears more significant <xref ref-type="bibr" rid="bib1.bibx19" id="paren.156"/>,
manganese might even be limiting to primary production in parts of the Southern Ocean.
This is at least suggested by the observational data: at the Zero-Meridian
GIPY5 transect south of 58<inline-formula><mml:math id="M407" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, the dissolved Mn concentration is very low at
the surface, and from <inline-formula><mml:math id="M408" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 to 250 <inline-formula><mml:math id="M409" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> there is a maximum of
<inline-formula><mml:math id="M410" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F9"/>, left transect).
This is probably due to remineralised particulate organic matter
<xref ref-type="bibr" rid="bib1.bibx76" id="paren.157"/>.
The maximum is not found in the model.
For instance, near 66<inline-formula><mml:math id="M411" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S at 1000 <inline-formula><mml:math id="M412" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> upwards, the modelled
<inline-formula><mml:math id="M413" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> decreases monotonically,
which suggests that biology does not explain the subsurface maximum.
However, our model may not be adequate.
Firstly, it may be unreasonable to treat Mn biologically identical to P.
Secondly, the subsurface maximum can be a direct consequence of a low oxygen
concentration, because that would decrease the oxidation rate <inline-formula><mml:math id="M414" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and
our redox model does not depend on <inline-formula><mml:math id="M415" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
This is not the most probable hypothesis, because at least during the
ANT XXIV/3 expedition only a slight oxygen minimum occurred around 300–400 m
depth which lies well below the Mn maximum <xref ref-type="bibr" rid="bib1.bibx76" id="paren.158"/>.
Thirdly, there could be problems with the underlying model.
For instance, if the vertical mixing in the underlying circulation model is too strong,
low-<inline-formula><mml:math id="M416" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> waters mix from the deep Southern Ocean
upwards through the 100 <inline-formula><mml:math id="M417" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> to 200 <inline-formula><mml:math id="M418" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> region, possibly removing
the vertical gradient of <inline-formula><mml:math id="M419" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p>The model suggests that a Mn biological cycle following P may have an important
contribution to the Southern Hemisphere, especially in the Pacific Ocean
(Fig. <xref ref-type="fig" rid="Ch1.F11"/>).
This should be tested further through field experiments and more sophisticated
model simulations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F17" specific-use="star"><caption><p>Manganese fluxes at 100 m depth
(<inline-formula><mml:math id="M420" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>):
<bold>(a)</bold> oxidised Mn and <bold>(b)</bold> biologically incorporated Mn.
</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1123/2017/bg-14-1123-2017-f17.pdf"/>

          </fig>

      <p>The biologically incorporated portion of the particulate Mn fraction contributes
most to the sinking Mn flux.
The oxidised fraction has only a significant, though still smaller, contribution
near hydrothermal vents compared to incorporated Mn (not presented).
It appears that, especially for low latitudes, biological incorporation is more
important than oxidation.
The flux patterns at 100 <inline-formula><mml:math id="M421" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> depth for incorporated (organic) and oxidised Mn are
quite different (Fig. <xref ref-type="fig" rid="Ch1.F17"/>).
The organic Mn flux pattern is similar to that of POC and the major nutrients,
whereas the oxidised Mn flux is typically higher, especially in the northern
seas.
However, in the low-latitude Pacific Ocean, the <inline-formula><mml:math id="M422" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> flux is much
smaller than the organic Mn flux.
So biology strongly influences the already-low <inline-formula><mml:math id="M423" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> at the
surface of the Pacific Ocean.</p>
</sec>
<sec id="Ch1.S4.SS2.SSS2">
  <title>Relation to redox and settling</title>
      <p>Our model yields small <inline-formula><mml:math id="M424" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in surface waters of
the eastern Pacific Ocean.
Either (i) the supply of dissolved Mn from the extensive OMZ in subsurface
waters of this region <xref ref-type="bibr" rid="bib1.bibx39" id="paren.159"><named-content content-type="post">their Fig. 1</named-content></xref> is too low, thus not
adequately simulated by the model, or (ii) the loss due to biological uptake is
too high.
For the OMZ the observed vertical and lateral gradients of both dissolved
<inline-formula><mml:math id="M425" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and dissolved Mn are very large, and would require a higher resolution
of the model grid in the OMZ regions.
This would require major revisions of the model and for the time being is merely
recommended for future work.
On the other hand, the hypothesis of perhaps too much biological removal has been
tested by simply turning off the biological module. The difference in east
Pacific surface waters (Fig. <xref ref-type="fig" rid="Ch1.F11"/>) shows a large
negative offset in exactly those surface waters that overlie the strong OMZ at
300 m depth <xref ref-type="bibr" rid="bib1.bibx39" id="paren.160"><named-content content-type="post">their Fig. 1</named-content></xref>.
Also in Fig. <xref ref-type="fig" rid="Ch1.F12"/> we see that a model run without
biological incorporation shows surface water Mn off California and off Peru that
tend to better agree with the observations than in the model
(Fig. <xref ref-type="fig" rid="Ch1.F8"/>), and also again the lateral distribution
mimics the distribution of the underlying OMZ subsurface waters.
Thus overall it appears that the discrepancy is more due to inadequate
simulation of the OMZ regions, than due to too-strong removal by the simulated
biology.</p>
      <p>Overall, the amount of manganese (<inline-formula><mml:math id="M426" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) in the
world ocean is slightly larger with biology (440 <inline-formula><mml:math id="M427" display="inline"><mml:mi mathvariant="normal">Gmol</mml:mi></mml:math></inline-formula>) compared to
without (409 <inline-formula><mml:math id="M428" display="inline"><mml:mi mathvariant="normal">Gmol</mml:mi></mml:math></inline-formula>, Table <xref ref-type="table" rid="Ch1.T6"/>).
This is not expected, because biological incorporation would give an extra sink
of Mn incorporated in particulate organic matter.
The explanation of this paradox lies in the interaction between the biological
cycle and the settling process of <inline-formula><mml:math id="M429" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the model.</p>
      <p>We apply a concentration-dependent sinking speed, which generates an
approximately homogeneous distribution of dissolved manganese of around
0.125 <inline-formula><mml:math id="M430" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> in much of the deep ocean.
There is a finite range of input fluxes where this works.
If the input flux gets above a certain value, <inline-formula><mml:math id="M431" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> exceeds
this background value, as it occurs in the Atlantic Ocean north of
35<inline-formula><mml:math id="M432" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N.
However, if the input flux is low enough, <inline-formula><mml:math id="M433" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> decreases
below this background value because of slow <inline-formula><mml:math id="M434" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> settling, like
it does in the east Pacific Ocean.
Inflow of higher <inline-formula><mml:math id="M435" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> waters by large-scale circulation also
counts as a source that can elevate Mn, but the currents in the deep Pacific
Ocean are slow.</p>
      <p>The biological processes modify this behaviour.
In PISCES there are two types of particulate carbon: one of large
particles that sinks with 50 <inline-formula><mml:math id="M436" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (in our version) and one of
small particles that sinks with 2 <inline-formula><mml:math id="M437" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
Most carbon, and thus also manganese, is present in the pool of small particles.
Even though, at least in the model, the Mn sources in the Pacific Ocean are small,
there is a lot of <inline-formula><mml:math id="M438" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the surface ocean that would ultimately be
<inline-formula><mml:math id="M439" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> if it were mixed down below the photic zone
depth.
However, with the biological cycle enabled, phytoplankton incorporates a part of
the <inline-formula><mml:math id="M440" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
Particulate organic Mn (just like POC) sinks down into the deep ocean.
During the downward propagation of the organic Mn particles, they remineralise,
releasing <inline-formula><mml:math id="M441" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the deep ocean.
A part of this <inline-formula><mml:math id="M442" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is converted to <inline-formula><mml:math id="M443" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> that
sinks down inefficiently (1 <inline-formula><mml:math id="M444" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) when <inline-formula><mml:math id="M445" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> has
not yet reached the equilibrium concentration <inline-formula><mml:math id="M446" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">X</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.
The remineralised Mn fills up, through oxidation, the
<inline-formula><mml:math id="M447" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> pool in the deep ocean.</p>
      <p>Biological processes store Mn in plankton, which is preserved from strong
Mn oxide settling (in the model).
This new pool of manganese fills the pools of dissolved and oxidised Mn in
the deep ocean.
This new pool is provided by the plankton that took it from the
<inline-formula><mml:math id="M448" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> pool in the photic zone.
Without biology this would be available for oxidation to <inline-formula><mml:math id="M449" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
during night.
Adding this extra Mn to the integrated total yields a higher Mn
quantity in <italic>Reference</italic> than in <italic>NoBio</italic>.</p>
</sec>
<sec id="Ch1.S4.SS2.SSS3">
  <title>Atlantic–Pacific contrast</title>
      <p>We saw a strong relative effect of biological incorporation in the Pacific Ocean
but not in the Atlantic Ocean.
This is because of the fact that <inline-formula><mml:math id="M450" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is already quite low in
the Pacific Ocean.
The added modelled sink of biological incorporation in the surface ocean, simply
following P uptake, quickly drains <inline-formula><mml:math id="M451" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations towards
zero.
In reality, <inline-formula><mml:math id="M452" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is still quite high in the surface of the
Pacific Ocean.
The high observed surface concentration is primarily caused by strong Mn sources
from anoxic sediments in the southeast Pacific Ocean, in combination with low
<inline-formula><mml:math id="M453" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in juxtaposed waters inhibiting manganese oxidation.
The discrepancy of the model versus the observations of <inline-formula><mml:math id="M454" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
is primarily due to the underestimation of those sources, and because in the
model oxidation does not explicitly depend on <inline-formula><mml:math id="M455" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
At the western boundary of the Atlantic Ocean the Mn source is higher, but one
would actually expect a high Mn source at eastern boundaries where upwelling
occurs.</p>
      <p>As dust deposition and dissolution are uncertain, we can also not exclude the
possibility that we underestimate the Mn dust flux into the (South) Pacific Ocean.
A preliminary simulation with the <xref ref-type="bibr" rid="bib1.bibx68" id="text.161"/> dust flux that is
especially higher in the Pacific Ocean, shows more realistic
<inline-formula><mml:math id="M456" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> throughout the Pacific Ocean.
Nonetheless, we decided to use the flux from <xref ref-type="bibr" rid="bib1.bibx38" id="text.162"/> that is,
supposedly, more state-of-the-art.
Furthermore, the <xref ref-type="bibr" rid="bib1.bibx68" id="text.163"/> dust flux did not fully solve the issue of
the low <inline-formula><mml:math id="M457" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations near the upwelling regions.</p>
</sec>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Redox rates</title>
      <p>Although we chose to model <inline-formula><mml:math id="M458" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> reduction and oxidation as
first-order-reaction kinetics, redox of <inline-formula><mml:math id="M459" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> within the water column is a
combination of several processes.
Firstly, <inline-formula><mml:math id="M460" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is subject to non-biological reduction,
significantly stimulated by sunlight <xref ref-type="bibr" rid="bib1.bibx108" id="paren.164"><named-content content-type="pre">e.g.</named-content></xref>.
This is taken into account by using different <inline-formula><mml:math id="M461" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for the
euphotic and aphotic zones of the ocean.
Secondly, the rate of oxidation is enhanced by microbes (bacteria and
fungi) in regions where <inline-formula><mml:math id="M462" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> supply is high
<xref ref-type="bibr" rid="bib1.bibx108 bib1.bibx113" id="paren.165"/>, and it depends on the <inline-formula><mml:math id="M463" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
concentration and pH.
This has been observed in the North Pacific Ocean <xref ref-type="bibr" rid="bib1.bibx46" id="paren.166"><named-content content-type="post">and references
therein</named-content></xref>, as well as in some GEOTRACES transects in the
Atlantic Ocean.
Measurements from the west Atlantic Ocean and Zero-Meridian Southern Ocean
GEOTRACES cruises show some variations with depth, e.g. near
10<inline-formula><mml:math id="M464" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and near 40–47<inline-formula><mml:math id="M465" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N (top of Fig. <xref ref-type="fig" rid="Ch1.F7"/>).
This corresponds to the maximum of dissolved Fe associated with the oxygen
minimum as reported for the same cruise by <xref ref-type="bibr" rid="bib1.bibx91" id="text.167"/>.
Our model does not reproduce such a maximum of dissolved Mn, because in the
model the Mn oxidation rate does not depend on <inline-formula><mml:math id="M466" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
Furthermore, fluxes from reducing sediments are not expected to reproduce the
feature either <xref ref-type="bibr" rid="bib1.bibx46" id="paren.168"/>.
This means that at least for those regions it would be logical to include a
dependence on <inline-formula><mml:math id="M467" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
However, this is not the pattern that attracts the most attention when
looking at the full transect.
The striking patterns are rather the high concentration at the
surface and near the Equator around 2.5 to 3 <inline-formula><mml:math id="M468" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> depth
(Fig. <xref ref-type="fig" rid="Ch1.F7"/>).
For this reason we have not included a dependency on <inline-formula><mml:math id="M469" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> to the
model.
In other words, while <inline-formula><mml:math id="M470" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> depends on oxygen, we assumed here that the
oxygen concentration is generally so high that its variation does not
affect <inline-formula><mml:math id="M471" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>In our model, oxidation takes place everywhere with the same
<inline-formula><mml:math id="M472" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.341</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M473" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
Based on the underestimation of the concentrations in the surface of the
Atlantic and Pacific oceans, one may think that <inline-formula><mml:math id="M474" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is too
high compared to <inline-formula><mml:math id="M475" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
In other words, assuming approximate equilibrium, the ratio
<inline-formula><mml:math id="M476" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mtext>red</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> could be too high.
However, the <inline-formula><mml:math id="M477" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> values in our model are chosen to get values consistent with the
ratio of concentration measurements of <inline-formula><mml:math id="M478" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M479" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
To this end we set <inline-formula><mml:math id="M480" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,light</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> to the mean value found by
<xref ref-type="bibr" rid="bib1.bibx108" id="text.169"/>, then used the dissolved and particulate profiles in Fig. 4
of <xref ref-type="bibr" rid="bib1.bibx17" id="text.170"/> to derive <inline-formula><mml:math id="M481" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M482" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>red,dark</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.
If we were to ignore that ratio, and increase the first-order rate constants for
reduction with a factor of 5 (a factor of 3 higher than the upper value
of the range found by <xref ref-type="bibr" rid="bib1.bibx108" id="altparen.171"/>), the model would still not yield sufficiently
high <inline-formula><mml:math id="M483" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> (results not presented).</p>
      <p>Still, one may introduce a threshold on the oxidation process (instead of the
settling of the particles).
The purpose would be to find out if this would result in higher surface
<inline-formula><mml:math id="M484" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, without having a significant effect on the ratio
between the dissolved manganese and the oxides.
In such a model simulation, oxidation only takes place when
<inline-formula><mml:math id="M485" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is higher than a certain threshold
<inline-formula><mml:math id="M486" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">D</mml:mi><mml:mtext>thr</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, equal to 0.125 <inline-formula><mml:math id="M487" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> in
<italic>OxidThreshold</italic>.
While this yields a distribution of <inline-formula><mml:math id="M488" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> not
significantly worse in the west Atlantic Ocean than that in <italic>Reference</italic>, the
<inline-formula><mml:math id="M489" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration ratio around
500 <inline-formula><mml:math id="M490" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> and below is then strongly underestimated compared to the
VERTEX data (Fig. <xref ref-type="fig" rid="Ch1.F16"/>, right panel, red dashed line).
While <inline-formula><mml:math id="M491" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> stays at realistic values, <inline-formula><mml:math id="M492" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
does not and approaches zero.
This is an argument for using an aggregation rather than an oxidation threshold.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Export dynamics</title>
      <p>The very homogeneous low dissolved concentration of Mn at <inline-formula><mml:math id="M493" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M494" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula>
in the deep waters of the west Atlantic GA02
section is remarkable (Fig. <xref ref-type="fig" rid="Ch1.F8"/>).
Such deep water values of <inline-formula><mml:math id="M495" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M496" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> were also found in the
deep waters of the Antarctic Ocean
<xref ref-type="bibr" rid="bib1.bibx76 bib1.bibx78 bib1.bibx79" id="paren.172"/>, as well as deep
waters of the Mediterranean Sea (2013 cruise, data will be published at
<uri>http://www.geotraces.org/dp/intermediate-data-product-2017</uri> IDP 2017).
For the Atlantic Ocean, these deep concentrations are much lower than the
dissolved Mn values of <inline-formula><mml:math id="M497" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5–0.6 <inline-formula><mml:math id="M498" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> reported for
deep samples at several Atlantic stations in the 1990s
<xref ref-type="bibr" rid="bib1.bibx97 bib1.bibx103 bib1.bibx104" id="paren.173"/>.
The sampling resolution is too coarse to exclude spatial variation,
but it appears the values produced by pioneering efforts to study the oceanic Mn
distributions are overestimations.</p>
      <p>The new ultraclean sampling methods <xref ref-type="bibr" rid="bib1.bibx92" id="paren.174"/>, rigorous
calibrations and excellent accuracy at the Bermuda crossover station for 12
trace metals <xref ref-type="bibr" rid="bib1.bibx81" id="paren.175"/> now yield a much larger database of uniformly
very low Mn <inline-formula><mml:math id="M499" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M500" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> in deep waters.
Given these very uniform and much lower background Mn concentrations, the
hydrothermal Mn plumes are better discernible and much more widespread than
realised in the 1990s.
Exactly over or very near the ridge crest this has recently been shown dramatically in
a plume more than 500 <inline-formula><mml:math id="M501" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> wide over the Gakkel Ridge in the
high-latitude Arctic
Ocean <xref ref-type="bibr" rid="bib1.bibx77" id="paren.176"/>, and in the Antarctic Ocean with a plume that
extends more than 1000 km, at a site near the Bouvet triple junction where three
ocean ridges meet <xref ref-type="bibr" rid="bib1.bibx76" id="paren.177"/>.
A similar long-range extent of the Mn hydrothermal plume has recently been
discerned in the Pacific Ocean <xref ref-type="bibr" rid="bib1.bibx90" id="paren.178"/>.</p>
      <p>Although the west Atlantic GA02 section is quite far west from the Mid-Atlantic
Ridge, the impact of the hydrothermal plume is still visible.
Dissolved Mn reaches a maximum of 0.2–0.3 <inline-formula><mml:math id="M502" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> in the
2500 to 3000 <inline-formula><mml:math id="M503" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> depth range just south of the Equator.
This is consistent with observations along two zonal (east–west) sections across
the Mid-Atlantic Ridge.
These are (i) the part of the GEOTRACES GA03 section that passes over
the TAG hydrothermal site (USGT11-16 at 26.14<inline-formula><mml:math id="M504" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 44.83<inline-formula><mml:math id="M505" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W)
<xref ref-type="bibr" rid="bib1.bibx125" id="paren.179"/>, and (ii) at <inline-formula><mml:math id="M506" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 12<inline-formula><mml:math id="M507" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S in the South Atlantic Ocean
<xref ref-type="bibr" rid="bib1.bibx86" id="paren.180"><named-content content-type="post">their Fig. 1</named-content></xref>.
In both sections a plume of dissolved Mn is visible that extends for
500 <inline-formula><mml:math id="M508" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> in both zonal directions.</p>
      <p>Remarkably, the background concentration of dissolved Mn is quite uniform in the
0.10 to 0.15 nM range.
Preliminary equilibrium calculations predict an equilibrium of 0.19 nM total
dissolved Mn with the solid phase pyrochroite <inline-formula><mml:math id="M509" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">OH</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">s</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
This total dissolved equilibrium concentration is quite close to the observed
0.10 to 0.15 nM background range measured in the oceans.
Please note that in pyrochroite the Mn is divalent Mn(II) just as the dissolved Mn forms.
Disregarding organic complexes, the latter dissolved equilibrium Mn(II) forms
would comprise 0.148 nM (78 %) free <inline-formula><mml:math id="M510" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mn</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> ion, 0.027 nM (<inline-formula><mml:math id="M511" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">14</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula>) <inline-formula><mml:math id="M512" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">MnCl</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> ion, 0.011 nM (<inline-formula><mml:math id="M513" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">5.8</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula>) <inline-formula><mml:math id="M514" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">MnCl</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="normal">aq</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
and a very low abundance 0.000028 nM (<inline-formula><mml:math id="M515" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.0015 %) <inline-formula><mml:math id="M516" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">MnOH</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> ion.
The above most simple Reaction (<xref ref-type="disp-formula" rid="R1"/>) for oxidation removal from
seawater may perhaps be split into several reaction steps as
follows:


                <disp-formula specific-use="align" content-type="numbered reaction"><mml:math id="M517" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mn</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow><mml:munder><mml:mi mathvariant="italic">⇋</mml:mi><mml:mtext>equil.</mml:mtext></mml:munder><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">MnOH</mml:mi><mml:mo>+</mml:mo></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">aq</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:munder><mml:mo>⟶</mml:mo><mml:mtext>slow</mml:mtext></mml:munder><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">OH</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">s</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:munder><mml:mo>⟶</mml:mo><mml:mtext>fast</mml:mtext></mml:munder></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E13"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">III</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">IV</mml:mi><mml:mo>)</mml:mo><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="normal">solid</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi mathvariant="normal">state</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">s</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where the dominant (78 %) dissolved <inline-formula><mml:math id="M518" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mn</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> species is via the minor
dissolved <inline-formula><mml:math id="M519" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">MnOH</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> species converted to solid <inline-formula><mml:math id="M520" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">OH</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and next
this is oxidised to one or several of various oxide forms, for example
hausmannite <inline-formula><mml:math id="M521" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> that is a mixed valency state (III, IV) Mn-oxide, or
<inline-formula><mml:math id="M522" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">IV</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> pyrolusite or birnessite.
Please note that in the <italic>Reference</italic> simulation an aggregation threshold for
particulate Mn at 25 pM was invoked, which via redox rate constants is based on
typical background dissolved Mn concentrations that was chosen at 0.125 nM.
The latter threshold value of 0.125 nM was required to have the model simulate
the observed data, and is quite close to the equilibrium concentration of
0.19 nM versus pyrochroite.
The notion of perhaps an equilibrium control is not new.
Previous pioneering measurements led to an apparent background concentration of
Mn of 0.4 nM or higher, that is now shown to be too high, yet otherwise
attempts were made to compare these values in terms of equilibrium versus
hausmannite <inline-formula><mml:math id="M523" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx49" id="paren.181"/>. A reaction mechanism was
proposed by <xref ref-type="bibr" rid="bib1.bibx121" id="text.182"/> which also involves conversion
of <inline-formula><mml:math id="M524" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Mn</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> via <inline-formula><mml:math id="M525" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">OH</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> as in the above Reaction (<xref ref-type="disp-formula" rid="Ch1.E13"/>).
Further research is needed to verify and confirm the hypothesis
of equilibrium of dissolved Mn at <inline-formula><mml:math id="M526" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.19</mml:mn></mml:mrow></mml:math></inline-formula> nM versus pyrochroite discussed here.</p>
      <p>In the <italic>NoThreshold</italic> simulation
<inline-formula><mml:math id="M527" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is underestimated in much of the ocean.
When removing the threshold,
the RMSD significantly worsens: it appears that the threshold
is needed to reasonably simulate <inline-formula><mml:math id="M528" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
But there are several alternatives to the aggregation threshold that may keep
<inline-formula><mml:math id="M529" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at a relatively homogeneous concentration.</p>
      <p>Firstly, instead of an aggregation threshold, a criterion on oxidation
may be imposed, because, hypothetically, there may be a lower limit below which
oxidising microbes would not proliferate and the pseudo-first-order rate
constant would then be lower.
The simulation with an oxidation threshold based on this idea gives similar
<inline-formula><mml:math id="M530" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> as the aggregation threshold; but as we saw in the
previous section, it would significantly influence the
<inline-formula><mml:math id="M531" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration ratio in the deep ocean,
making for a less realistic simulation.
Therefore, this alternative should probably not be pursued.</p>
      <p>Secondly, the process of oxidation is strongly mediated by adsorption
onto particles, after which they form larger aggregates that settle
faster.
This is now parameterised by increasing the settling velocity of
particles with depth.
However, a more explicit model for adsorption/desorption could be useful.
Possibly, much of the <inline-formula><mml:math id="M532" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> does not settle efficiently.
In that case, another tracer of adsorbed Mn is needed that would export oxidised
Mn (in adsorbed or aggregated form), but not too fast to account for the
background <inline-formula><mml:math id="M533" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.
The adsorption should not take place onto a homogeneous pool of
particles as is effectively done in our model, but rather onto a
component, for example calcium carbonate (<inline-formula><mml:math id="M534" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CaCO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)
<xref ref-type="bibr" rid="bib1.bibx69 bib1.bibx31" id="paren.183"/> and lithogenic particles
<xref ref-type="bibr" rid="bib1.bibx93" id="paren.184"/>.
Sediment samples show a strong correlation between authigenic manganese
and lithogenic particles, though Mn does not show any correlation with
biogenic silica, POC or <inline-formula><mml:math id="M535" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CaCO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> according to recent observations
and modelling <xref ref-type="bibr" rid="bib1.bibx93" id="paren.185"/>.
On the one hand, this suggests that only lithogenic particles are a scavenger of
Mn.
On the other hand, we do not know whether the correlation comes from Mn
adsorption onto lithogenic particles, or if it is lithogenic in itself.</p>
      <p>Thirdly, oxidation is mediated by microbes (mainly bacteria)
<xref ref-type="bibr" rid="bib1.bibx108 bib1.bibx121 bib1.bibx113 bib1.bibx31" id="paren.186"/>.
They possibly prolong the time of <inline-formula><mml:math id="M536" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> particles spent in the
euphotic zone, but this has not been tested.
In the model we assume that these processes are included in the redox rate
constant.
If we want the redox rate constants to depend on inhomogeneously
distributed quantities like the bacterial distribution or the oxygen
concentration, the equations need to be modified, and
our model may need to be extended.
Subsequently, more Mn would stay suspended.</p>
      <p>Fourthly, it has been suggested that dissolved Mn ligands keep Mn in
solution <xref ref-type="bibr" rid="bib1.bibx99 bib1.bibx67 bib1.bibx64" id="paren.187"/>.
That would result in less conversion to manganese oxide aggregates, and hence
may solve the removal problem, but this would yield wrong
<inline-formula><mml:math id="M537" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration ratios like we saw for
<italic>OxidThreshold</italic>.
Similarly, nanoparticles, which have a size that falls within the operationally
defined dissolved Mn, keep Mn afloat as long as they do not aggregate.</p>
<sec id="Ch1.S4.SS4.SSS1">
  <title>Hydrothermal activity</title>
      <p>In the model, hydrothermal <inline-formula><mml:math id="M538" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is added to the ocean
based on a model proxy of <inline-formula><mml:math id="M539" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx28" id="paren.188"/>.
For the <italic>Reference</italic> simulation the hydrothermal <inline-formula><mml:math id="M540" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
flux was set to <inline-formula><mml:math id="M541" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.10</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole <inline-formula><mml:math id="M542" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> for each mole of <inline-formula><mml:math id="M543" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula>.
There is no reference to literature values in Table <xref ref-type="table" rid="Ch1.T3"/>
since these are very uncertain.
For instance,
<xref ref-type="bibr" rid="bib1.bibx49" id="text.189"/> note that “<xref ref-type="bibr" rid="bib1.bibx23" id="text.190"/> reported that
the <inline-formula><mml:math id="M544" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> : <inline-formula><mml:math id="M545" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mi mathvariant="normal">He</mml:mi></mml:mrow></mml:math></inline-formula> ratios vary by over a factor of 2 in the
Galapagos vents, and as we discuss below, similar variations are found
at 21<inline-formula><mml:math id="M546" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N”.
We have chosen a value to yield an acceptable distribution of <inline-formula><mml:math id="M547" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>The goal of <italic>LowHydro</italic> is to investigate whether the combination of the
high hydrothermal input of <inline-formula><mml:math id="M548" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and strong aggregation is
needed to get a more accurate simulation of the distribution of
<inline-formula><mml:math id="M549" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, namely that of <italic>Reference</italic>.
To this end, we chose to decrease hydrothermal input and also to
decrease the settling velocity in <italic>LowHydro</italic>.
In <italic>LowHydro</italic> the spatial distribution of <inline-formula><mml:math id="M550" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>
becomes more homogeneous.
Neither the low background concentration nor the high hydrothermal vent
concentrations are reproduced any more (Fig. <xref ref-type="fig" rid="Ch1.F14"/>).
Decreasing hydrothermal input and the settling velocity by a smaller factor
than 10 results in a <inline-formula><mml:math id="M551" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> distribution that is better than
<italic>LowHydro</italic> but not as good as in <italic>Reference</italic> (not presented).
In any case, the main result is that a high hydrothermal input very similar to
or higher than that used in the <italic>Reference</italic> simulation is needed to
reproduce <inline-formula><mml:math id="M552" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p>According to observations, a negligible amount of Mn from hydrothermal
vents reaches the surface ocean.
As <xref ref-type="bibr" rid="bib1.bibx16" id="text.191"/> put it:
“The hydrothermal input of iron and manganese [...] is essentially all
scavenged and removed in the deep sea prior to having a chance to mix back
into the surface waters”.
However, this is what we have thought about iron while there are now
doubts about this <xref ref-type="bibr" rid="bib1.bibx112" id="paren.192"/>.
Similarly, hydrothermal Mn may not be completely removed from the ocean before
reaching the surface by currents and vertical mixing.
There are different potential reasons for this.
The oxidation of Mn(II) is thermodynamically favoured, but the large
activation energy of Mn(II) oxidation renders Mn(II) stable in
aquatic environments <xref ref-type="bibr" rid="bib1.bibx85" id="paren.193"/>.
Other potential reasons for <inline-formula><mml:math id="M553" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> stability are already given on
the previous page.
The low <inline-formula><mml:math id="M554" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations away from hydrothermal vents are
established in our model by removing <inline-formula><mml:math id="M555" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from the high
hydrothermal Mn input down to 25 <inline-formula><mml:math id="M556" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>.</p>
      <p>Interestingly, in this way, in <italic>Reference</italic>, hydrothermal flux accounts
for 92 % of the total Mn input.
Dust deposition is 18 times and sediment flux 31 times as small as hydrothermal
input, and still <inline-formula><mml:math id="M557" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in the upper 1000 m of the ocean is
dominated by <inline-formula><mml:math id="M558" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> release from marginal sediments and
dissolution from deposited dust.
Nonetheless, some of the hydrothermally derived <inline-formula><mml:math id="M559" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> reaches
the ocean surface.
In our model, 8 % of <inline-formula><mml:math id="M560" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> in the surface is hydrothermal in origin.
The reason for the importance of sediment and dust is that in the model the
settling velocity of <inline-formula><mml:math id="M561" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is much higher near hydrothermal vents
(up to 10 <inline-formula><mml:math id="M562" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) than in the surface ocean
(<inline-formula><mml:math id="M563" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>s</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M564" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).
The modelling study by <xref ref-type="bibr" rid="bib1.bibx59" id="text.194"/> suggests a
settling velocity much higher than our <inline-formula><mml:math id="M565" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.
They used a model with an additional tracer of large particles
(aggregate products) that had settling speeds of up to
175 <inline-formula><mml:math id="M566" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (near hydrothermal vents, as they model those
regions).
This shows that using an increasing settling velocity is justified.
Moreover, it suggests that at least two particle tracers are needed in
the model.
It is worth investigating in future studies if this would make for a more
accurate and reliable model.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p>This is the first study in which the 3-D distribution of <inline-formula><mml:math id="M567" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
has been modelled and compared to the recent observations from the
GEOTRACES programme.
A combination of photoreduction and Mn sources to the upper ocean yields
high surface concentrations of dissolved manganese.
However, the concentration is at several locations underestimated by the model.
The Mn sources to the ocean surface and the sinks are uncertain and could
therefore be adjusted for a more accurate simulation.
The most important sources for the upper ocean are sediments, dust, and,
more locally, rivers, whereas hydrothermal vents are the most important in the
deep ocean.
The observed sharp hydrothermal signals are produced by assuming both a
strong source and a strong removal of Mn near hydrothermal vents.
Our model further shows that the Mn at the surface in the Atlantic Ocean moves
downwards into the North Atlantic Deep Water, but because of strong removal the
Mn signal does not propagate southwards.</p>
      <p>There is a mainly homogeneous background concentration of dissolved Mn
of about 0.10–0.15 <inline-formula><mml:math id="M568" display="inline"><mml:mi mathvariant="normal">nM</mml:mi></mml:math></inline-formula> throughout most of the deep ocean.
Our model reproduces this by means of a threshold on solid manganese oxides of
25 <inline-formula><mml:math id="M569" display="inline"><mml:mi mathvariant="normal">pM</mml:mi></mml:math></inline-formula>,
suggesting that a minimal concentration of particulate Mn is needed before
aggregation and removal become efficient.
An aggregation threshold, as applied in our model, appears reasonable, and does
not affect the modelled <inline-formula><mml:math id="M570" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentration ratio.
An oxidation threshold is more troublesome as it affects this ratio in an
undesirable way.
Since the settling condition as a sole threshold already appears to mitigate most
of the removal, it is reasonable to further develop the model with the
aggregation threshold and without the oxidation threshold.
Still, the simplified redox and subsequent settling of <inline-formula><mml:math id="M571" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is incomplete
and could be too imprecise, as future studies might show.</p>
      <p>Our model includes biology, and this has a big impact in the Pacific Ocean.
However, we have at the moment no clear evidence for typical
uptake–remineralisation processes as we do for iron.
At the same time, we are missing dominant sources from anoxic sediments,
especially in upwelling regions like at the east Pacific boundary.
Those sources, once adequately represented in the simulation, might be large
enough to compensate for the effect of our biological Mn uptake at the surface.
Such a source, and possibly
biological incorporation, should be improved in future versions of the model.
Besides these processes, it may also be necessary to
model microbial activity throughout the ocean, as that is not
homogeneously distributed.
The ocean-wide chemical first-order reaction may be inadequate to represent such
microbial activity in certain regions.</p>
      <p>Hydrothermal fluxes of <inline-formula><mml:math id="M572" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> were set to such a high rate that we must
assume 96 % is scavenged near the outflow of the vents.
This choice was made to account for the local high <inline-formula><mml:math id="M573" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> near
the oceanic ridges.
This was combined with a high <inline-formula><mml:math id="M574" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>ox</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in the deep ocean to prevent
hydrothermal <inline-formula><mml:math id="M575" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> spreading far away from the oceanic ridges in
a too-high concentration.
As an alternative, settling may not need to be set as high as
10 <inline-formula><mml:math id="M576" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in the deep ocean, but then it is unclear how to
simulate the local nature of <inline-formula><mml:math id="M577" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> anomalies near the
ocean ridges.
One possibility is to include extra species of <inline-formula><mml:math id="M578" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula>, which may include a very
fast sinking particle and a very reactive <inline-formula><mml:math id="M579" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> species.</p>
      <p>Process studies of <inline-formula><mml:math id="M580" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> are necessary to determine the rate constants, and
possibly thresholds, for redox, scavenging and aggregation.
More measurements of particulate <inline-formula><mml:math id="M581" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">ox</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations would be
useful as well.
When measuring particulate Mn, it needs to be clear what is measured exactly.
It would for instance be useful if (1) a range of particle sizes were
measured, and (2) a structural analysis of the particles were performed,
such that one can unambiguously say onto which particle <inline-formula><mml:math id="M582" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Mn</mml:mi></mml:mrow></mml:math></inline-formula> is adsorbed
or into which particle it is incorporated.</p>
</sec>
<sec id="Ch1.S6">
  <title>Code availability</title>
      <p>We used NEMO 3.6 svn 7036, which can be downloaded through this command:
<preformat><![CDATA[$ svn checkout -r 7036 \
http://forge.ipsl.jussieu.fr/nemo/svn/
branches/2015/nemo_v3_6_STABLE]]></preformat>
However, the latest stable version of NEMO is usually advisable.
A login will be asked that you can create on the
<ext-link xlink:href="http://www.nemo-ocean.eu/">NEMO website</ext-link>.
The manganese module comes as part of different Fortran 90/95 source code files
that are to be found in the electronic supplement.
Those should be put in <monospace>NEMOGCM/CONFIG/*/MY_SRC/</monospace> that adds and
overrides symlinks in <monospace>NEMOGCM/CONFIG/*/WORK/</monospace>.
The asterisk must be replaced with your configuration name that should be based
on <monospace>ORCA2_OFF_PISCES</monospace>.</p>
      <p>Both NEMO and the manganese model are available under the
<ext-link xlink:href="http://www.cecill.info/">CeCILL licence</ext-link>.</p>
      <p>Model output data are available at <uri>https://doi.org/10.1594/PANGAEA.871981</uri>.</p><?xmltex \hack{\clearpage}?>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <title>Data–model comparison</title>
      <p>We quantitatively compare our model results with the observations at the GA02
GEOTRACES transect in the west Atlantic Ocean.
First the model output is horizontally interpolated onto the station
coordinates, keeping the vertical model grid (10 <inline-formula><mml:math id="M583" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at the surface up
to 500 <inline-formula><mml:math id="M584" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> thickness near the bottom).
Then the modelled <inline-formula><mml:math id="M585" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> that lie closest to each of the
observations are associated with each other.
To be precise, for each observation, we take the shallowest grid box whose upper
bound lies deeper than the observation,
after which residuals can be defined as <inline-formula><mml:math id="M586" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>O</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
where <inline-formula><mml:math id="M587" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the observed and <inline-formula><mml:math id="M588" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> the modelled <inline-formula><mml:math id="M589" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>,
for each <inline-formula><mml:math id="M590" display="inline"><mml:mrow><mml:mi>i</mml:mi><mml:mo>∈</mml:mo><mml:mo mathvariant="italic">{</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mi>N</mml:mi><mml:mo mathvariant="italic">}</mml:mo></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M591" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> the number of data points.
The interpolation introduces a representative error that is taken to be
part of the residual <xref ref-type="bibr" rid="bib1.bibx117" id="paren.195"/>.
Then several statistics are determined, namely the Root Mean Square
Deviation (RMSD), the Reliability Index (RI) and the Pearson correlation
coefficient <inline-formula><mml:math id="M592" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>.</p>
      <p>In addition to classical statistical indices (Pearson correlation index
<inline-formula><mml:math id="M593" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>, root mean square error RMS), another
additional performance indicator has been used as suggested in previous skill
assessment studies <xref ref-type="bibr" rid="bib1.bibx106 bib1.bibx122" id="paren.196"/>: the reliability index
<xref ref-type="bibr" rid="bib1.bibx60" id="paren.197"/>.
The reliability index “quantifies
the average factor by which model predictions differ from observations”
<xref ref-type="bibr" rid="bib1.bibx106" id="paren.198"/>.
It is in essence the root-mean-square deviation, but it uses the logarithm of
the residual.
This is useful when both large and small values need to be considered (as for
this case).
The RI is given by
          <disp-formula id="App1.Ch1.E1" content-type="numbered"><mml:math id="M594" display="block"><mml:mrow><mml:mi mathvariant="normal">RI</mml:mi><mml:mo>=</mml:mo><mml:mi>exp⁡</mml:mi><mml:msqrt><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:msup><mml:mfenced open="(" close=")"><mml:mi>log⁡</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msqrt><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M595" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the measured concentration with index <inline-formula><mml:math id="M596" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M597" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the model
prediction associated with the respective observation <inline-formula><mml:math id="M598" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M599" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> is the number of observations.</p>
      <p><?xmltex \hack{\newpage}?>Furthermore, for each sensitivity simulation the significance of the
change in each goodness-of-fit statistic compared with the corresponding
reference simulation is calculated.
This is determined by means of a Monte Carlo simulation on the reference
simulation for which a subsample of 400 is randomly selected from
the original set of 1320 data–model points.
They are the pairs of observations and model output, both on the model
grid.
This is done 50 000 times, and from this the <inline-formula><mml:math id="M600" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">σ</mml:mi></mml:mrow></mml:math></inline-formula> confidence
interval is calculated (the mean <inline-formula><mml:math id="M601" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> two times the standard
deviation).
Suppose that we want to simulate <inline-formula><mml:math id="M602" display="inline"><mml:mi>q</mml:mi></mml:math></inline-formula>, and assume <inline-formula><mml:math id="M603" display="inline"><mml:mi>q</mml:mi></mml:math></inline-formula> is in a steady state.
Given a reference simulation <inline-formula><mml:math id="M604" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>, for any model simulation <inline-formula><mml:math id="M605" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> resulting in
<inline-formula><mml:math id="M606" display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>Y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the RMSD of
<inline-formula><mml:math id="M607" display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>Y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> must be outside the <inline-formula><mml:math id="M608" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">σ</mml:mi></mml:mrow></mml:math></inline-formula> confidence range of the
RMSD distribution of <inline-formula><mml:math id="M609" display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>X</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to say that <inline-formula><mml:math id="M610" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> is a significant
improvement or worsening compared to <inline-formula><mml:math id="M611" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>.</p>
      <p>The statistics tell us how high the modelling accuracies of our simulations
are.
Moreover, these statistics are illustrated with comparison plots and an
extensive discussion of those.
For the visual comparison between model and observations, horizontal and
vertical cross-sections of the model data are presented.
Using the same colour scale, observations are plotted as coloured dots
to directly compare the model with the observations.
Horizontal <inline-formula><mml:math id="M612" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> sections are presented for four
different depths, where “surface” signifies the average over the upper
45 <inline-formula><mml:math id="M613" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, “500 <inline-formula><mml:math id="M614" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>” is 400–600 <inline-formula><mml:math id="M615" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> averaged,
“2500 <inline-formula><mml:math id="M616" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>” is 2100–2900 <inline-formula><mml:math id="M617" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> averaged and
“4500 <inline-formula><mml:math id="M618" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>” is 4000–5000 <inline-formula><mml:math id="M619" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> averaged.
The colour scale is not linear, to better show the main features at both
low and high concentrations of <inline-formula><mml:math id="M620" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
The vertical <inline-formula><mml:math id="M621" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">diss</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> sections are calculated from the
3-D model data by converting the ORCA2 gridded model data to a
rectilinear mapping and interpolating the rectilinear data onto the
cruise track coordinates.</p><?xmltex \hack{\clearpage}?><supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-14-1123-2017-supplement" xlink:title="zip">doi:10.5194/bg-14-1123-2017-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
</app>
  </app-group><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p>We would like to thank several people in particular who helped in different
ways in this study. Angela Milne, William Landing and Joseph Resing kindly
provided their manganese data from the Pacific Ocean. We thank
Caroline Slomp, Catherine Jeandel and Micha Rijkenberg for the useful
discussion. Loes Gerringa has kindly provided speciation calculations on
manganese. Loes Gerringa and Micha Rijkenberg organised and served as
expedition leaders of the three cruises of the GA02 section. This research
was funded by the <ext-link xlink:href="http://www.nwo.nl/en/">NWO</ext-link> (grant 839.08.410:
GEOTRACES, Global Change and Microbial Oceanography in the West
Atlantic Ocean, and grant 820.01.014: GEOTRACES Netherlands–USA Joint
Effort on Trace Metals in the Atlantic Ocean). This study was partly
supported by a Swedish Research Council grant (349-2012-6287) in the
framework of the French–Swedish cooperation in the common research training
programme in the climate, environment and energy agreement between VR and
LSCE, for the project “Particle transport derived from isotope tracers and
its impact on ocean biogeochemistry: a GEOTRACES project in the
Arctic Ocean”. The sampling and analysis of the data of Milne and Landing
(unpublished data) were supported by <ext-link xlink:href="http://www.nsf.gov/">NSF</ext-link> grants
OCE-0223378, OCE-0550317 and OCE-0649639.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
<italic>Postprints may be found at</italic>: <ext-link xlink:href="https://arxiv.org/abs/1606.07128">arXiv:1606.07128</ext-link>.
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: C. Heinze<?xmltex \hack{\newline}?>
Reviewed by: three anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Manganese in the west Atlantic Ocean in the context of the first global ocean circulation model of manganese</article-title-html>
<abstract-html><p class="p">Dissolved manganese (Mn) is a biologically essential element.
Moreover, its oxidised form is involved in removing itself and several other trace
elements from ocean waters.
Here we report the longest thus far (17 500 km length) full-depth ocean section
of dissolved Mn in the west Atlantic Ocean, comprising 1320 data values of high
accuracy.
This is the GA02 transect that is part of the GEOTRACES
programme, which aims to understand trace element distributions.
The goal of this study is to combine these new observations with new,
state-of-the-art, modelling to give a first assessment of the main sources and
redistribution of Mn throughout the ocean.
To this end, we simulate the distribution of dissolved Mn using a
global-scale circulation model.
This first model includes simple parameterisations to account
for the sources, processes and sinks of Mn in the ocean.
Oxidation and (photo)reduction, aggregation and settling, as well as biological
uptake and remineralisation by plankton are included in the model.
Our model provides, together with the observations, the following insights:
<ul class="itemize"><li class="item"><p class="p">The high surface concentrations of manganese are caused by the
combination of photoreduction and sources contributing to the upper ocean.
The most important sources are sediments, dust, and, more locally,
rivers.</p></li><li class="item"><p class="p">Observations and model simulations suggest that surface Mn in the Atlantic
Ocean moves downwards into the southward-flowing North Atlantic Deep Water
(NADW), but because of strong removal rates there is no elevated concentration
of Mn visible any more in the NADW south of 40° N.</p></li><li class="item"><p class="p">The model predicts lower dissolved Mn in surface waters of the
Pacific Ocean than the observed concentrations.
The intense oxygen minimum zone (OMZ) in subsurface waters is deemed to be a
major source of dissolved Mn also mixing upwards into surface waters, but the
OMZ is not well represented by the model.
Improved high-resolution simulation of the OMZ may solve this problem.</p></li><li class="item"><p class="p">There is a mainly homogeneous background concentration of dissolved Mn of
about 0.10–0.15 nM throughout most of the deep ocean. The model
reproduces this by means of a threshold on particulate manganese oxides of
25 pM, suggesting that a minimal concentration of particulate Mn is
needed before aggregation and removal become efficient.</p></li><li class="item"><p class="p">The observed distinct hydrothermal signals are produced by assuming both a
strong source and a strong removal of Mn near hydrothermal vents.</p></li></ul></p></abstract-html>
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