<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-14-1511-2017</article-id><title-group><article-title>Copepod faecal pellet transfer through the meso- and bathypelagic layers in
the Southern Ocean in spring</article-title>
      </title-group><?xmltex \runningtitle{Copepod faecal pellet transfer through the meso- and bathypelagic layers}?><?xmltex \runningauthor{A. Belcher et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Belcher</surname><given-names>Anna</given-names></name>
          <email>a.belcher@noc.soton.ac.uk</email>
        <ext-link>https://orcid.org/0000-0002-9583-5910</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Manno</surname><given-names>Clara</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Ward</surname><given-names>Peter</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Henson</surname><given-names>Stephanie A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Sanders</surname><given-names>Richard</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Tarling</surname><given-names>Geraint A.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>National Oceanography Centre, Southampton, SO14 3ZH, UK</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>University of Southampton, Southampton, SO14 3ZH, UK</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>British Antarctic Survey, Cambridge, CB3 0ET, UK</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Anna Belcher (a.belcher@noc.soton.ac.uk)</corresp></author-notes><pub-date><day>24</day><month>March</month><year>2017</year></pub-date>
      
      <volume>14</volume>
      <issue>6</issue>
      <fpage>1511</fpage><lpage>1525</lpage>
      <history>
        <date date-type="received"><day>1</day><month>December</month><year>2016</year></date>
           <date date-type="rev-request"><day>2</day><month>December</month><year>2016</year></date>
           <date date-type="rev-recd"><day>3</day><month>March</month><year>2017</year></date>
           <date date-type="accepted"><day>12</day><month>March</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017.html">This article is available from https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017.pdf</self-uri>


      <abstract>
    <p>The faecal pellets (FPs) of zooplankton can be important
vehicles for the transfer of particulate organic carbon (POC) to the deep
ocean, often making large contributions to carbon sequestration. However,
the routes by which these FPs reach the deep ocean have yet to be fully
resolved. We address this by comparing estimates of copepod FP production to
measurements of copepod FP size, shape, and number in the upper mesopelagic
(175–205 m) using Marine Snow Catchers, and in the bathypelagic using
sediment traps (1500–2000 m). The study is focussed on the Scotia Sea,
which contains some of the most productive regions in the Southern Ocean,
where epipelagic FP production is likely to be high. We found that, although
the size distribution of the copepod community suggests that high numbers of
small FPs are produced in the epipelagic, small FPs are rare in the deeper
layers, implying that they are not transferred efficiently to depth.
Consequently, small FPs make only a minor contribution to FP fluxes in the
meso- and bathypelagic, particularly in terms of carbon. The dominant FPs in
the upper mesopelagic were cylindrical and elliptical, while ovoid FPs were
dominant in the bathypelagic. The change in FP morphology, as well as size
distribution, points to the repacking of surface FPs in the mesopelagic and
in situ production in the lower meso- and bathypelagic, which may be
augmented by inputs of FPs via zooplankton vertical migrations. The flux of
carbon to the deeper layers within the Southern Ocean is therefore strongly
modulated by meso- and bathypelagic zooplankton, meaning that the community
structure in these zones has a major impact on the efficiency of FP transfer
to depth.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>The biological carbon pump (BCP) from the atmosphere to the deep ocean is an
important process by which carbon can be sequestered for millennia or longer
(Volk and Hoffert, 1985). About 10 % of surface ocean
primary production sinks out (is exported) of the surface ocean, with the
remainder being remineralised in situ. However, only a small fraction of
this material (<inline-formula><mml:math id="M1" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 %) reaches the deep ocean
(Sarmiento and Gruber, 2006), with most of it being respired by
grazers or bacteria (Azam et al., 1983) in the upper
mesopelagic (Martin et al., 1987). Nevertheless, it is
estimated that the BCP keeps atmospheric CO<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> around 200 ppm lower than
preindustrial levels (Parekh et al., 2006). Small changes
in the BCP, such as a change in the depth at which sinking material is
remineralised can result in large changes to the climate system; if the
depth at with 63 % of sinking carbon is respired is increased by 24 m
globally, this could decrease atmospheric CO<inline-formula><mml:math id="M3" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> by 10–27 ppm
(Kwon et al., 2009). For this reason, the nature of particles
occurring at different depths is important to understand.</p>
      <p>The repackaging of slow-sinking individual phytoplankton cells into
fast-sinking faecal pellets (FPs) can promote efficient export of particulate organic carbon (POC) out of
the euphotic zone (Hamm et al., 2001). The contribution of FPs to bathypelagic
particle fluxes can be large (<inline-formula><mml:math id="M4" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 90 %) (Carroll et al., 1998; Manno et
al., 2015; Wilson et al., 2013), providing direct evidence of the importance
of zooplankton FPs to the transport of carbon to the deep ocean. However,
surface produced FPs can also undergo intense reworking and fragmentation in
the euphotic and upper-mesopelagic zones (González et al., 1994b;
Wexels-Riser et al., 2001, 2007), through processes such
as coprophagy (ingestion of FP), coprorhexy (fragmentation of FP), microbial
remineralisation and physical aggregation, and disaggregation (Lampitt et al.,
1990; Poulsen and Iversen, 2008; Turner, 2015; Wilson et al., 2008). Thus, FPs
can also provide a source of nutrition for other zooplankton and bacterial
communities en route to the deep ocean (Miquel et al., 2015;
Wexels-Riser et al., 2001). The complexity of these interacting factors
results in a wide range of estimates (<inline-formula><mml:math id="M5" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 1–<inline-formula><mml:math id="M6" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 100 %; Turner,
2015) of the contribution FPs make to POC flux (% FP carbon (FPC)), which is typically
measured using sediment traps (Dagg et al., 2003; Fowler et al., 1991;
Gleiber et al., 2012; Manno et al., 2015; Suzuki et al., 2001; Wassmann et
al., 2000; Wilson et al., 2013).</p>
      <p>Differences in FP shape, composition, and density, as well as varying depths
of production (through zooplankton species residing at different depths and
also vertical migration)
will greatly influence the magnitude of FP-associated POC that reaches the deep ocean (Atkinson et al., 2012; Steinberg
et al., 2000; Wallace et al., 2013; Wilson et al., 2008). Both diel and
seasonal migrations of zooplankton can directly transport carbon out of the
euphotic zone to the mesopelagic, bypassing the region of rapid
remineralisation (Jónasdóttir et al., 2015; Kobari et al., 2008;
Steinberg et al., 2000). Different zooplankton feeding strategies will also
influence the effect that their vertical migrations have on POC export
(Wallace et al., 2013).</p>
      <p>The direct sinking of zooplankton FPs can provide an efficient vehicle for the
sequestration of carbon in the deep ocean. For example, direct sedimentation
of FPs from large salp blooms in the upper ocean can result in huge
depositions on the sea floor at depths of <inline-formula><mml:math id="M7" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 4000 m due to their high
sinking velocities (Smith Jr. et al., 2014). Additionally, the swarming
behaviour of krill can result in en masse sinking of FPs, which can
overload recycling zooplankton grazers and be efficiently transferred through
the upper ocean (Clarke et al., 1988). Alternatively, FPs may arrive in the
deep ocean via a FP “cascade” effect (von Bodungen et al., 1987; Urrere and
Knauer, 1981), being constantly reworked and transformed with depth. The fact
that FPs have been observed in the deep-ocean highlights the important role
they play in carbon sequestration; however, knowledge of the route by which
these FPs reach the deep ocean is not yet clear. There is a need for
comparisons between the composition and characteristics of sinking FPs just
below the euphotic zone and in the deep ocean to improve our understanding of
both the origin of faecal material reaching the deep ocean and how it is
potentially modified by meso- and bathypelagic zooplankton.</p>
      <p>Zooplankton FP can make a large contribution to fluxes of POC in the meso- and
bathypelagic of the Scotia Sea (e.g. Belcher et al., 2016b; Cavan et al.,
2015; Manno et al., 2015). In this region, the transfer of FPs through the
mesopelagic (as well as the mechanisms controlling their transfer) is
therefore a key determinant of the efficiency of the BCP. Here we use Marine Snow Catchers and deep-ocean sediment traps in the Scotia Sea, within the
Southern Ocean, to collect intact sinking FPs in the upper mesopelagic and
bathypelagic respectively, and use these data to compare the characteristics
of mesopelagic and bathypelagic FPs. We compare copepod abundances in the
upper 200 m with FP fluxes in both the upper mesopelagic and bathypelagic in
order to understand the processes controlling the fate of FPs produced in the
epipelagic. We use these data to determine whether FPs arriving in sediment
traps in the deep ocean are a result of a direct detrital rain from the
surface, or are produced in the mesopelagic via the grazing and repackaging
of this material by deep zooplankton populations. We focus in particular on
copepod FPs as copepods are the numerically dominant zooplankton in our study
region, typically comprising <inline-formula><mml:math id="M8" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 90 % of total zooplankton (Ward et al.,
2012).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Details of Marine Snow Catchers (MSC) deployments during cruises
JR291 and JR304 to the Scotia Sea.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Cruise</oasis:entry>  
         <oasis:entry colname="col2">Site</oasis:entry>  
         <oasis:entry colname="col3">Latitude</oasis:entry>  
         <oasis:entry colname="col4">Longitude</oasis:entry>  
         <oasis:entry colname="col5">Date</oasis:entry>  
         <oasis:entry colname="col6">Time (GMT)</oasis:entry>  
         <oasis:entry colname="col7">Depth of MSC (m)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">JR291</oasis:entry>  
         <oasis:entry colname="col2">P2</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M9" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55.192</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M10" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>41.342</oasis:entry>  
         <oasis:entry colname="col5">2 Dec 2013</oasis:entry>  
         <oasis:entry colname="col6">23:45</oasis:entry>  
         <oasis:entry colname="col7">176</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">P2</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M11" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55.196</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M12" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>41.332</oasis:entry>  
         <oasis:entry colname="col5">3 Dec 2013</oasis:entry>  
         <oasis:entry colname="col6">15:54</oasis:entry>  
         <oasis:entry colname="col7">204</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">P2</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M13" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55.259</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M14" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>41.295</oasis:entry>  
         <oasis:entry colname="col5">7 Dec 2013</oasis:entry>  
         <oasis:entry colname="col6">15:07</oasis:entry>  
         <oasis:entry colname="col7">203</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">P3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M15" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>52.769</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M16" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>40.155</oasis:entry>  
         <oasis:entry colname="col5">13 Dec 2013</oasis:entry>  
         <oasis:entry colname="col6">13:49</oasis:entry>  
         <oasis:entry colname="col7">205</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">P3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M17" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>52.769</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M18" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>40.154</oasis:entry>  
         <oasis:entry colname="col5">14 Dec 2013</oasis:entry>  
         <oasis:entry colname="col6">06:33</oasis:entry>  
         <oasis:entry colname="col7">180</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">JR304</oasis:entry>  
         <oasis:entry colname="col2">P3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M19" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>52.812</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M20" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>39.973</oasis:entry>  
         <oasis:entry colname="col5">12 Dec 2014</oasis:entry>  
         <oasis:entry colname="col6">22:40</oasis:entry>  
         <oasis:entry colname="col7">176</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">P3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M21" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>52.812</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M22" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>39.977</oasis:entry>  
         <oasis:entry colname="col5">13 Dec 2014</oasis:entry>  
         <oasis:entry colname="col6">22:47</oasis:entry>  
         <oasis:entry colname="col7">183</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Study site</title>
      <p>Sediment traps have been deployed for a number of years at two sites, P2 and
P3 (Fig. 1), upstream and downstream of South Georgia (at
<inline-formula><mml:math id="M23" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55.248<inline-formula><mml:math id="M24" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, <inline-formula><mml:math id="M25" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>41.265<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E and <inline-formula><mml:math id="M27" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>52.812<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N,
<inline-formula><mml:math id="M29" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>39.972<inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E respectively) in the Scotia Sea in the Southern Ocean
(Manno et al., 2015). The Scotia Sea is mainly located in the eastward
flowing Antarctic Circumpolar Current (ACC), which is split by a number of
frontal systems including the Southern Antarctic Circumpolar Front (SACCF;
Fig. 1). The complex circulation patterns and variability in frontal systems
shapes the Scotia Sea ecosystem (Murphy et al., 2007). P3 and P2 are located
downstream and upstream of South Georgia respectively, leading to marked
differences in community structure with large rapidly sinking diatoms likely
to be more prevalent in the iron fertilised downstream region (Korb et al.,
2012; Smetacek et al., 2004). Phytoplankton blooms at P3 can be sustained for
3–4 months (Whitehouse et al., 2008), whereas blooms are typically much
shorter in the SACCF region where P2 is located (Park et al., 2010), likely
influencing the dynamics of the zooplankton community. Variability in
regional dispersal or retention by the current systems of the ACC is
important for determining the seasonal dynamics of Scotia Sea ecosystems
(Murphy et al., 2007; Thorpe et al., 2007).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>Stations sampled in the Scotia Sea. White lines indicate average
frontal positions. APF is the Antarctic Polar Font (Orsi et al.,
1995), SACCF is the Southern Antarctic Circumpolar Current Front
(Thorpe et al., 2002), SB-ACC is the Southern Boundary –
Antarctic Circumpolar Current (Orsi et al., 1995). White
dotted lines indicate the position of the ice edge on 3 December 2013
(OSTIA Sea Ice satellite data).</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f01.png"/>

        </fig>

      <p>During cruises in austral spring 2013 (JR291) and 2014 (JR304) aboard the
R.R.S. <italic>James Clark Ross</italic>, samples of sinking particles in the upper
mesopelagic were collected using Marine Snow Catchers (MSCs) (Table 1) and
zooplankton abundance data using Bongo nets. Sediment trap data were obtained
from traps deployed in 2012 and 2013 at P2 and P3, at depths of 1500 and
2000 m respectively. Mean current velocities in December 2012 and 2013
(measured with a Nortek Aquadopp current meter deployed just below the sediment traps, ST)
were 7.2 and 4.5 cm s<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and, 14.2 and 12.5 cm s<inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>at P3 and P2
respectively. These data agree with mean current velocities at the depth of
the ST at both sites of <inline-formula><mml:math id="M33" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 cm s<inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> observed by Whitehouse et
al. (2012) in 2008, suggesting that the effects of lateral advection are
minimal and as such they are not considered in this study.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Mesozooplankton collection</title>
<sec id="Ch1.S2.SS2.SSS1">
  <title>Net sampling</title>
      <p>Mesozooplankton samples were collected at both P2 and P3 using a
motion-compensating Bongo net (61 cm mouth diameter, 2.8 m long,
200 <inline-formula><mml:math id="M35" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m mesh). The net was equipped with solid cod ends, deployed to
200 m and hauled vertically to the surface at 0.22 m s<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Samples
were preserved in 4 % formalin (<inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>) in seawater before being
identified to species/taxa using a binocular microscope and staged where
appropriate. At least 500 individuals were counted per sample. Counts were
converted into ind. m<inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (0–200 m) based on the area of the Bongo net
mouth and the depth of deployment. A total of five deployments were carried
out during JR291 and two during JR304. Average abundances for each
species/taxa were calculated by averaging all the deployments (from both
cruises) at each site. Antarctic krill (<italic>Euphausia superba</italic>) and other
large euphausiids were occasionally caught in the Bongo nets, but the Bongo
net does not accurately quantify their abundance due to their patchy
distribution and net avoidance capabilities. Large euphausiid abundances were
therefore not considered; consequently, zooplankton abundances in this study reflect
mesozooplankton abundances. In particular, copepod species were
overwhelmingly dominant in terms of abundance at our study sites, typically
<inline-formula><mml:math id="M39" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 90 % of total zooplankton abundance (Ward et al., 2012). Zooplankton
were grouped into small microcopepod species (<italic>Oithona similis</italic>,
<italic>Oncaea</italic> sp. and <italic>Ctenocalanus</italic> sp.), large calanoid copepod
species (<italic>Rhincalanus gigas</italic>, <italic>Calanoides acutus</italic>,
<italic>Calanus similimus</italic>, <italic>C. propinquus</italic>, <italic>Euchaeta</italic> spp.,
and <italic>Metridia</italic> spp.), small euphausiids (all euphausiid species caught
in net), and other zooplankton (all remaining species).</p>
</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <title>Prediction of faecal pellet size distribution in epipelagic
layers</title>
      <p>We predicted the size distribution of FPs in the epipelagic layers by using
the size distribution of the copepod community assessed via prosome length
(PL, mm) (Ward et al., 2012, their Table A1) and the known relationship
between copepod size and the volume of their FPs (FPV, <inline-formula><mml:math id="M40" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m<inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
(Mauchline, 1998; Stamieszkin et al., 2015).
              <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M42" display="block"><mml:mrow><mml:msub><mml:mi>log⁡</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mi mathvariant="normal">FPV</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:msub><mml:mi>log⁡</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mfenced close=")" open="("><mml:mi mathvariant="normal">PL</mml:mi></mml:mfenced><mml:mo>+</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:math></disp-formula>
            We take mean values of <inline-formula><mml:math id="M43" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M44" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> of 2.58 and 5.4 respectively,
from Stamieszkin et al. (2015), which were derived from literature values of FPV and PL.
Using measured copepod abundances, we then calculated the size distribution
of FPs produced by our population of copepods. We compared the percent
abundance in each size class, making the assumption that all copepods were
egesting FPs at the same rate (see Discussion). As the zooplankton net tows
are integrated from the surface to 200 m, there is a slight overlap with the
MSC samples; however, as the bulk of zooplankton are found in the upper
100 m (Ward et al., 2014), these net samples are largely representative of
the epipelagic layer and we refer to it as such for simplicity. Non-copepod
zooplankton (<inline-formula><mml:math id="M45" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 % mesozooplankton abundance) were not considered
in this calculation and represent a background error in this approach.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Faecal pellet collection</title>
<sec id="Ch1.S2.SS3.SSS1">
  <title>Marine Snow Catchers deployments</title>
      <p>MSCs were deployed in the upper mesopelagic, defined
here as 110 m below the base of the mixed layer depth (MLD) identified from
vertical profiles of the water column taken prior to MSC deployments using a
conductivity–temperature–depth (CTD) unit (Seabird 9Plus with SBE32
carousel). MSCs are large (95 L) PVC closing water bottles, designed to
minimise turbulence so particles are more likely to remain intact (Belcher et
al., 2016a, b; Cavan et al., 2015; Riley et al., 2012). Once at the
appropriate depth, MSCs were closed via a mechanical release mechanism, and subsequently recovered and left on deck for a settling period (2 h). Following
settling, they were drained and particles that sank fast enough to reach the
bottom collector tray (“fast-sinking” particles; Riley et al., 2012) were
removed from the tray and stored at 2–4 <inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for further analysis.
All particles collected in the MSC tray were counted as it was not necessary
to split the sample. Particles reaching the bottom of the tray that were
visible by eye were picked from the tray using a wide bore pipette. Given the
MSC height of 1.53 m, particles originating at the top of the MSC are
required to sink at a minimum rate of 18.4 m d<inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to reach the base of the MSC. However, considering measurements of
FP sinking velocity in the Southern Ocean of 27 to 1218 m d<inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(Atkinson et al., 2012; Belcher et al., 2016b; Cavan et al., 2015), this is
likely sufficient to capture sinking FPs.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <title>Sediment trap deployments</title>
      <p>ST were deployed in the bathypelagic (1500 to 2000 m). The
P3 trap (2000 m depth) was deployed in May 2013 on cruise JR287, and P2
(1500 m depth) deployed on 8 December 2012 on cruise JR280. Both traps were
recovered in December 2013 on cruise JR291 aboard the R.R.S. <italic>James Clark Ross</italic>. In addition the P2 mooring was redeployed on 7 December 2013 and
recovered on 28 November 2014 during cruise JR304. Samples from the spring
period (October to January) were analysed for comparison with MSC
deployments. The ST consisted of a plastic funnel with a baffle at the top
(0.5 m<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> surface area) and a narrow opening at the bottom, through
which particles fall into 1 L sampling cups (McClane, PARFLUX Mark 78H-21).
The traps were programmed so that sampling cups would rotate after 14 to 31 days,
with shorter periods set to coincide with expected periods of high
productivity. Prior to deployment, each cup was filled with a preservative
solution of sodium chloride buffered 0.01 % mercuric chloride. Upon
recovery, samples were photographed and the pH recorded. Swimmers, defined as
zooplankton that were alive and intact on entering the trap, were picked out
using tweezers and removed from the sample. Each sample was then split into a
number of equal aliquots (determined by the amount of material in the sample)
using a rotary splitter McClane Wet Sample Divider (WSD-10). Three replicates
were analysed for ST FP, with all FPs in each replicate counted (see Table S1
in the Supplement for absolute counts). Here we focus on ST trap samples in
November and December (austral spring) to match MSC and zooplankton net
deployments.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Faecal pellet analysis</title>
      <p>All FPs were photographed using an Olympus SZX16 microscope. FPs were
classified visually as round, ovoid, or cylindrical using light microscopy.
All FPs in each category collected in the MSC were counted, and their length
and width measured using ImageJ. For each ST sample, the dimensions of
10–50 FPs of each class were measured and, for MSC samples, all FPs were
counted and measured. FP volumes were calculated for round, ovoid, and
cylindrical pellets using the formula for a sphere, ellipsoid, and cylinder
respectively. Equivalent spherical diameters (ESD) were also calculated. We
compare FP volume rather than FP number to avoid bias due to possible
fragmentation (Wexels Riser et al., 2010). The carbon contents of FPs were
calculated based on conversion factors of 0.035, 0.052, and
0.030 mg C mm<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for round, ovoid, and cylindrical FPs respectively,
based on measurements made on FPs collected from the ST in spring–early autumn
(Manno et al., 2015).</p>
      <p>Without faecal production experiments of isolated species, it is difficult to
ascertain the exact origin of FPs collected in the MSC and ST. Previous
studies (González, 1992; González et al., 1994a; González and
Smetacek, 1994; Martens, 1978; Wilson et al., 2008; Yoon et al., 2001)
suggest that ovoid/ellipsoidal pellets originate from copepods, pteropods and
larvaceans, cylindrical pellets from krill and copepods, and spherical
pellets from amphipods, small copepods, and crustacean nauplii.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Faecal pellet sinking velocities and fluxes</title>
      <p>Sinking velocities (<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of a sample of FPs collected in MSC were measured on
board both cruises. During JR291, sinking velocities were measured in a
graduated glass cylinder in a temperature controlled laboratory
(2 <inline-formula><mml:math id="M52" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). For each FPs, the sinking velocity was calculated from the
average of the time taken to sink past two marked distances (10 cm apart),
with the starting point more than 10 cm from the water surface. During
JR304, sinking velocities were measured in a temperature controlled (at
4 <inline-formula><mml:math id="M53" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) flow chamber system (Ploug and Jorgensen, 1999), suspending FPs
in an upward flow and taking the average of three measurements. Only FPs
larger than 0.15 mm ESD (i.e. those visible by eye) could be measured. No
significant differences were found between sinking velocities measured during
JR291 and JR304 by these two different methods (Student's <inline-formula><mml:math id="M54" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test, <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>).</p>
      <p>The median sinking velocity of measured FPs for each MSC was utilised to
calculate the sinking FP flux (FPF).
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M56" display="block"><mml:mrow><mml:mi mathvariant="normal">FPF</mml:mi><mml:mfenced close=")" open="("><mml:msub><mml:mi>n</mml:mi><mml:mtext>FP</mml:mtext></mml:msub><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">FP</mml:mi></mml:msub></mml:mrow><mml:mi>A</mml:mi></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>w</mml:mi><mml:mi>h</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>
          Here, <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">FP</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the total number of FPs collected at the base of the
MSC (excluding krill FPs), <inline-formula><mml:math id="M58" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> the area of the MSC opening based on inner MSC
diameter, and <inline-formula><mml:math id="M59" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> the height of the snow catcher (1.53 m).</p>
      <p>For sediment trap samples, FP fluxes were calculated as follows:
            <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M60" display="block"><mml:mrow><mml:mi mathvariant="normal">FPF</mml:mi><mml:mfenced close=")" open="("><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">FP</mml:mi></mml:msub><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">FP</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mi>d</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M61" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> is the number of days that the trap was open (15 days) and <inline-formula><mml:math id="M62" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> is
the area of the sediment trap (0.5 m<inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS6">
  <title>Faecal pellet comparisons</title>
      <p>FP collected in the ST and MSC were compared in terms of the number of FPs in
each morphological type as well as in terms of carbon. As the absolute number
of FPs was vastly different between MSC and ST samples due to attenuation with
depth, we compared the percentage abundance and carbon across the size
distribution of all FPs from measured FP volumes. As only an average FP size
for each morphological type (rather than for all individual FPs) was measured
for samples from the ST deployments, we make use of historical sediment trap
data (Manno et al., 2015) at the same sites from December 2009 and 2010. The
size of all FPs in each sample split were measured in the study of Manno et
al. (2015) and hence we use these data to compare size distributions of MSC
and ST collected FPs. Manno et al. (2015) also categorised FPs into ovoid,
cylindrical, and round, with an additional category of elliptical. We combine
cylindrical and elliptical categories due to their similar morphology and to
allow for comparison with our MSC data. Although this introduces uncertainty in
terms of inter-annual variability between 2009–2010 (full sediment trap
data) and 2013–2014 (Marine Snow Catchers data), consistency in the FP types
and percentages in each category between years (Fig. S1 in the Supplement)
provides confidence in the use of these historical data. Numbers of large
cylindrical FPs, probably originating from large euphausiids, were removed
from counts given the large potential bias in the quantification of these
organisms in the net samples. Again we took into account only the spring data
(November and December).</p>
</sec>
<sec id="Ch1.S2.SS7">
  <title>Statistics</title>
      <p>In order to estimate error uncertainty, we take the standard error of our
measurements, i.e. multiple Bongo net tows for zooplankton, multiple MSC
deployments for mesopelagic FPs, and multiple ST deployments for bathypelagic
FP. We compare zooplankton size distributions using a Kolmogorov–Smirnov
test. FP size distributions (in terms of % abundance) are also compared
using an Anderson–Darling <inline-formula><mml:math id="M64" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> sample test as this test is more sensitive to
differences in the tails and differences in shift, scale, and symmetry when
means are similar (Engmann and Cousineau, 2011). All statistics were carried
out in RStudio (version 0.98.1091; R Core Team, 2014).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <?xmltex \opttitle{Zooplankton community and faecal\hack{\break} pellet production}?><title>Zooplankton community and faecal<?xmltex \hack{\break}?> pellet production</title>
      <p>On average, total zooplankton abundances and species compositions were
similar at P2 and P3 (Fig. 2), with small microcopepod species
<italic>Oithona similis</italic>, <italic>Oncaea</italic> sp., and
<italic>Ctenocalanus</italic> sp. outnumbering the main large calanoid copepod
species (<italic>Rhincalanus gigas, Calanoides acutus, Calanus similimus</italic>,
<italic>C. propinquus</italic>, <italic>Euchaeta</italic> spp., and <italic>Metridia</italic> spp.)
(Table S2, Fig. 2). The number of zooplankton with a PL <inline-formula><mml:math id="M65" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 2 mm was similar
at P2 and P3 (ratio P3 : P2 of 1.1), but the abundance of larger copepods
(4–7 mm PL) at P3 was almost double that of P2 (ratio P3 : P2 of 1.8)
(Fig. S2).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Average zooplankton abundances (<inline-formula><mml:math id="M66" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> ind. m<inline-formula><mml:math id="M68" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>;
0–200 m) measured in the Scotia Sea in December 2013 and 2014, using a
200 <inline-formula><mml:math id="M69" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m mesh. Small microcopepods (black), large calanoids (white), other
copepods (striped), small euphausiids (light grey), and other zooplankton (dark
grey) (see text for full details on groups). Error bars show <inline-formula><mml:math id="M70" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SE of
total zooplankton abundance based on multiple Bongo net tows at each site.</p></caption>
          <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f02.png"/>

        </fig>

      <p><?xmltex \hack{\newpage}?>The predicted size distribution of egested FP from our mesozooplankton
copepod community highlights that most FPs egested in the epipelagic would be
in the smallest size category <inline-formula><mml:math id="M71" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.001 mm<inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> (97.6 <inline-formula><mml:math id="M73" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 20.3
and 97.0 <inline-formula><mml:math id="M74" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4.0 % at P2 and P3 respectively) with low contributions
(<inline-formula><mml:math id="M75" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 2 %) from each of the larger FP size categories (Fig. 3a). The high
standard error of FP <inline-formula><mml:math id="M76" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.001 mm<inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> at P2 is in part due to very high
abundances of <italic>Oithona similis</italic> during one deployment. Removing this
net from the average gives 97.8 <inline-formula><mml:math id="M78" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 13.7 % FP <inline-formula><mml:math id="M79" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.001 mm<inline-formula><mml:math id="M80" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>.
The predicted size distributions of FPs at P2 and P3 were not significantly
different (<inline-formula><mml:math id="M81" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M82" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.5, Mann–Whitney <inline-formula><mml:math id="M83" display="inline"><mml:mi>U</mml:mi></mml:math></inline-formula> test, Kolmogorov–Smirnov test, and
Anderson–Darling <inline-formula><mml:math id="M84" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> sample test).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Faecal pellet size distributions for P2 (left) and P3 (right) in
the Scotia Sea. The percent (%) abundance of faecal pellets in each size
class (volume, mm<inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is presented for <bold>(a)</bold> estimated egested faecal
pellet size distributions based on mesozooplankton abundances (200 <inline-formula><mml:math id="M86" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m
mesh), <bold>(b)</bold> faecal pellets measured in Marine Snow Catchers (MSCs) at
MLD <inline-formula><mml:math id="M87" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> 110 m averages (<inline-formula><mml:math id="M88" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SE), and <bold>(c)</bold> faecal pellets in sediment traps (ST). Krill
faecal pellets have been removed. Note the uneven faecal pellet volume size
classes, and log scale on the <inline-formula><mml:math id="M89" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis for <bold>(a)</bold>.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Sinking faecal pellets</title>
      <p>Sinking faecal pellets collected by the MSC (upper mesopelagic) and the ST
(bathypelagic) are described in terms of size and shape to assess changes
between these two layers.</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S3.SS2.SSS1">
  <title>Faecal pellet shape</title>
      <p>The morphologies of FPs captured by the MSC at P2 were heterogeneous (Figs. 4,
5a), with cylindrical/elliptical FPs, and round FPs making up similarly high
percent contributions to the total number of FPs. Conversely, a single
morphology dominated in the P3 MSC samples, which were cylindrical FPs of
<inline-formula><mml:math id="M90" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.005 mm<inline-formula><mml:math id="M91" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> (Fig. 5c).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Light microscopy photographs of faecal pellets collected from
Marine Snow Catchers <bold>(a–c)</bold> and sediment traps <bold>(d–f)</bold>. The different
morphological classes are illustrated: <bold>(a, d)</bold> round, <bold>(b, e)</bold> cylindrical,
and <bold>(c, f)</bold> ovoid. Scale bar <inline-formula><mml:math id="M92" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.5 mm.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f04.pdf"/>

          </fig>

      <p>All morphological classes found in the upper mesopelagic (MSC samples) were
also present in the bathypelagic (ST samples, Fig. 4). However, the dominant
type of FPs changed between these two layers (Fig. 5). Ovoid FPs made only low
contributions (<inline-formula><mml:math id="M93" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 8.3 and <inline-formula><mml:math id="M94" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 1.4 % at P2 and P3 respectively) to
total FP abundance in the MSC samples but were the dominant type in most size
categories in the ST samples (up to 25.2 and 13.1 % at P2 and P3
respectively, Fig. 5).</p>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <title>Faecal pellet size</title>
      <p>The predicted FP size distributions of pellets produced in the epipelagic by
the net caught copepod community were significantly different to those
observed in the upper mesopelagic (MSC samples) at both P2 and P3
(Kolmogorov–Smirnov test, <inline-formula><mml:math id="M95" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M96" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.58 (P2), <inline-formula><mml:math id="M97" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M98" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.67 (P3),
DF <inline-formula><mml:math id="M99" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 11, <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>). Comparison of Fig. 3a and b reveals that there was a
reduced dominance of the smallest FPs (0–0.001 mm<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from
<inline-formula><mml:math id="M102" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 96 <inline-formula><mml:math id="M103" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M104" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 20 to <inline-formula><mml:math id="M105" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 18 <inline-formula><mml:math id="M106" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M107" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 5 % between the two
layers at both sites.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Percent (%) contribution of each pellet type to total faecal
pellet abundance: ovoid (black), cylindrical and elliptical (white) and
round (grey). FP from <bold>(a)</bold> P2 Marine Snow Catchers, <bold>(b)</bold> P2 sediment trap, <bold>(c)</bold> P3
Marine Snow Catchers, <bold>(d)</bold> P3 sediment trap. Krill faecal pellets have been
removed. Note the uneven faecal pellet volume size classes.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f05.png"/>

          </fig>

      <p>A further loss in the smaller FP size categories is apparent between the
upper-mesopelagic MSC samples and the bathypelagic ST samples (Fig. 3c). FPs
<inline-formula><mml:math id="M108" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.003 mm<inline-formula><mml:math id="M109" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> in volume decreased from 35.5 <inline-formula><mml:math id="M110" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 13.4 to
5.0 <inline-formula><mml:math id="M111" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.4 % at P2 and from 52.3 <inline-formula><mml:math id="M112" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6.7 to
14.0 <inline-formula><mml:math id="M113" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.7 % at P3. Based on size alone, the FP community appears
to have become less diverse in the bathypelagic layer, with most FPs
(<inline-formula><mml:math id="M114" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 80 %) occupying a narrower size range in the ST samples,
(0.003–0.01 mm<inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> compared to the MSC samples (0.001–0.02 mm<inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
FP size distributions in the MSC and ST were not, however, significantly
different at either P2 or P3 (Anderson–Darling <inline-formula><mml:math id="M117" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> sample test,
<inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">AD</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M119" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.3,
DF <inline-formula><mml:math id="M120" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 11, <inline-formula><mml:math id="M121" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M122" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.2 and <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">AD</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M124" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.43, DF <inline-formula><mml:math id="M125" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 11, <inline-formula><mml:math id="M126" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M127" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.9 at
P2 and P3 respectively). Re-running the test for only FP size categories
<inline-formula><mml:math id="M128" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.003 mm<inline-formula><mml:math id="M129" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> highlights a significant difference in the %FP
abundance in the smaller size categories between the MSC and ST
(<inline-formula><mml:math id="M130" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M131" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.03 at both P2 and P3).</p>
</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Faecal pellet carbon</title>
      <p>Although small FPs were numerically dominant in the MSC, comparison of Figs. 5
and 6 reveals higher contributions of the larger FP size classes to total FPC.
This is not unexpected as larger FPs contain a larger amount of
carbon. FPC data highlight the importance of the loss of large FPs to the
carbon sinking through the water column. Although abundances of small FPs
greatly reduced with depth, this does not represent such a large change in
terms of carbon.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Percent (%) contribution of each pellet type to total faecal
pellet carbon: ovoid (black), cylindrical and elliptical (white) and round
(grey). FP from <bold>(a)</bold> P2 Marine Snow Catchers, <bold>(b)</bold> P2 sediment trap, <bold>(c)</bold> P3 Marine Snow Catchers, <bold>(d)</bold> P3 sediment trap. Krill faecal pellets have been removed.
Note the uneven faecal pellet volume size classes.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS4">
  <title>Faecal pellet sinking velocities and fluxes</title>
      <p>Sinking velocities of FPs (excluding krill FPs) collected in the MSC ranged
from 52 to 382 m d<inline-formula><mml:math id="M132" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at P2 and 13 to 227 m d<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at P3,
reflecting the range in FP shapes and sizes. Generally, small FPs had lower
sinking velocities than larger FPs. We measured FP sinking rates (excluding
krill FPs) of 47–120 m d<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for FP <inline-formula><mml:math id="M135" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.002 mm<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>, and
36–270 m d<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for FP <inline-formula><mml:math id="M138" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.02 mm<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> (Table S3 in the
Supplement). Rates measured in this study are consistent with the range of
5–220 m d<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> given by Turner (2002) for copepod FPs.</p>
      <p>At P3, the flux of cylindrical and elliptical FPs in the MSC was an order of
magnitude higher than fluxes of round or ovoid FPs
(190 716 FP m<inline-formula><mml:math id="M141" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M142" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> compared to
32 172 FP m<inline-formula><mml:math id="M143" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Similarly at P2, cylindrical and elliptical
FPs were the dominant FP type (21 128 FP m<inline-formula><mml:math id="M145" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, but fluxes of
round FPs were also important (14 596 FP m<inline-formula><mml:math id="M147" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at this site
(Table 2). FP fluxes in the ST were dominated by ovoid FPs at both sites
(Table 2).</p>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T2" orientation="landscape"><caption><p>FP fluxes (<inline-formula><mml:math id="M149" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SE, <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">FP</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M151" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M152" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) of ovoid, cylindrical and elliptical
(Cyl <inline-formula><mml:math id="M153" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> Ell), and round FP at P2 and P3 as measured in Marine Snow Catchers (MSCs) and sediment traps (ST) in the Scotia Sea in spring.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right" colsep="1"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col5" align="center" colsep="1">P2 </oasis:entry>  
         <oasis:entry rowsep="1" namest="col6" nameend="col9" align="center">P3 </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Ovoid</oasis:entry>  
         <oasis:entry colname="col3">Cyl <inline-formula><mml:math id="M154" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> Ell</oasis:entry>  
         <oasis:entry colname="col4">Round</oasis:entry>  
         <oasis:entry colname="col5">Total</oasis:entry>  
         <oasis:entry colname="col6">Ovoid</oasis:entry>  
         <oasis:entry colname="col7">Cyl <inline-formula><mml:math id="M155" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> Ell</oasis:entry>  
         <oasis:entry colname="col8">Round</oasis:entry>  
         <oasis:entry colname="col9">Total</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">MSC</oasis:entry>  
         <oasis:entry colname="col2">6309 (<inline-formula><mml:math id="M156" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>2698)</oasis:entry>  
         <oasis:entry colname="col3">21 128 (<inline-formula><mml:math id="M157" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1328)</oasis:entry>  
         <oasis:entry colname="col4">14 596 (<inline-formula><mml:math id="M158" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1124)</oasis:entry>  
         <oasis:entry colname="col5">89 850 (<inline-formula><mml:math id="M159" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>11 922)</oasis:entry>  
         <oasis:entry colname="col6">13 416 (<inline-formula><mml:math id="M160" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>8207)</oasis:entry>  
         <oasis:entry colname="col7">190 716 (<inline-formula><mml:math id="M161" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>51 623)</oasis:entry>  
         <oasis:entry colname="col8">32 172 (<inline-formula><mml:math id="M162" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>15 239)</oasis:entry>  
         <oasis:entry colname="col9">236 304 (<inline-formula><mml:math id="M163" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>63 079)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">ST</oasis:entry>  
         <oasis:entry colname="col2">640 (<inline-formula><mml:math id="M164" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>33)</oasis:entry>  
         <oasis:entry colname="col3">238 (<inline-formula><mml:math id="M165" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>82)</oasis:entry>  
         <oasis:entry colname="col4">175 (<inline-formula><mml:math id="M166" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>37)</oasis:entry>  
         <oasis:entry colname="col5">1052 (<inline-formula><mml:math id="M167" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>152)</oasis:entry>  
         <oasis:entry colname="col6">11 226 (<inline-formula><mml:math id="M168" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>706)</oasis:entry>  
         <oasis:entry colname="col7">7406 (<inline-formula><mml:math id="M169" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1274)</oasis:entry>  
         <oasis:entry colname="col8">4668 (<inline-formula><mml:math id="M170" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>14)</oasis:entry>  
         <oasis:entry colname="col9">23 300 (<inline-formula><mml:math id="M171" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1994)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">MSC/ST</oasis:entry>  
         <oasis:entry colname="col2">9.9</oasis:entry>  
         <oasis:entry colname="col3">88.9</oasis:entry>  
         <oasis:entry colname="col4">83.5</oasis:entry>  
         <oasis:entry colname="col5">39.9</oasis:entry>  
         <oasis:entry colname="col6">1.2</oasis:entry>  
         <oasis:entry colname="col7">25.8</oasis:entry>  
         <oasis:entry colname="col8">6.9</oasis:entry>  
         <oasis:entry colname="col9">10.1</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Discussion</title>
      <p>In this study we compare predicted size distributions of FPs produced by the
copepod community in the epipelagic to those of sinking FPs in the upper
mesopelagic (from MSC) and the bathypelagic (from ST) in order to determine
the fate of FPs sinking through the mesopelagic, and assess the importance of
deep-dwelling zooplankton on the efficiency of the BCP in the Southern
Ocean.</p>
<sec id="Ch1.S4.SS1">
  <?xmltex \opttitle{Changes in faecal pellet with depth:\hack{\break} upper mesopelagic}?><title>Changes in faecal pellet with depth:<?xmltex \hack{\break}?> upper mesopelagic</title>
      <p>Our data suggest that small FPs are not transferred efficiently from the
epipelagic to the meso- and bathypelagic, and hence make a small contribution
to FP fluxes at depth, particularly in terms of carbon. Comparison of
estimated copepod FP production with measurements of sinking FPs in the upper
mesopelagic (from MSC) gives an indication of the degree of retention in that
layer. The community at both P2 and P3 was dominated by microcopepod species
which, based on their size, produce small FPs, which are expected to sink more
slowly than large FPs (Komar et al., 1981; Small et al., 1979; Stamieszkin et
al., 2015). Agreeing with the data presented here, small FPs
(<inline-formula><mml:math id="M172" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.002 mm<inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are predicted to have a sinking velocity 3 times
slower than larger FPs (<inline-formula><mml:math id="M174" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.02 mm<inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> based on the empirical
relationship of Small et al. (1979) for copepod FPs.</p>
      <p>The longer residence time of small FPs in the upper ocean (due to their slower
sinking velocities) means they are exposed to remineralisation processes, such
as coprophagous feeding, fragmentation, and microbial remineralisation, for a
longer period of time. This type of retention filter and low export
efficiency of small FPs has been observed in a number of oceanographic
environments (e.g. Dagg et al., 2003; Viitasalo et al., 1999; Wexels-Riser et
al., 2001). Wexels Riser et al. (2010) made observations over the upper
200 m of a Norwegian fjord, finding that large FPs produced by
<italic>Calanus finmarchicus</italic> contributed disproportionately to vertical flux
despite large numbers of small FPs produced by <italic>Oithona similis</italic>,
agreeing well with the loss of small FPs that we observed in the Scotia Sea.</p>
      <p>It is important to acknowledge here that although the 200 <inline-formula><mml:math id="M176" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m mesh
used in this study is commonly used in zooplankton surveys, this leads to an
underestimation of the smaller zooplankton size classes present in the
epipelagic. Ward et al. (2012) found that a 53 <inline-formula><mml:math id="M177" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m mesh caught 5.87
times more zooplankton than a 200 <inline-formula><mml:math id="M178" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m net in the upper mesopelagic
of the northern Scotia Sea in spring. However, in this study an
underestimation of the small zooplankton size classes serves to reinforce the
fact that small FPs dominate the flux of FPs out of the epipelagic and are
largely attenuated as they pass through the mesopelagic.</p>
      <p>Comparison of freshly egested FP size distributions with the size
distributions of FPs sinking through the mesopelagic relies here on the
assumption that different species within the copepod community had the same
rates of egestion. FP production varies with species, as well as factors such
as season and food availability; the range in FP production rates between
different copepod species across a number of high-latitude studies is
2–48 FP ind. d<inline-formula><mml:math id="M179" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Dagg et al., 2003; Daly, 1997; Roy et al., 2000;
Thibault et al., 1999; Urban-Rich et al., 1999). However, as the estimated
abundance of egested FPs in the smallest size category (0–0.001 mm<inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is
between 60 and 250 times greater than the next largest category, the smallest FPs
are still likely to dominate the FP community even if egestion rates are
varied within reasonable bounds. Therefore, despite our assumptions regarding
rates of egestion, our conclusion of rapid attenuation of these small FPs in
the upper mesopelagic remains valid.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <?xmltex \opttitle{Changes in faecal pellet with depth:\hack{\break} meso- to bathypelagic}?><title>Changes in faecal pellet with depth:<?xmltex \hack{\break}?> meso- to bathypelagic</title>
      <p>Our data reveal a change in FP size, shape, and abundance between the upper
mesopelagic and bathypelagic of the Scotia Sea suggesting in situ FP
production by deeper-dwelling zooplankton. The occurrence of intact and fresh
FPs in deep-sediment traps in the Southern Ocean (e.g. Accornero et al., 2003;
Manno et al., 2015) may therefore be a result of an indirect, cascade-like
transfer through the mesopelagic as they are reprocessed by different
zooplankton communities (Miquel et al., 2015; Urrere and Knauer, 1981).</p>
      <p>Urrere and Knauer (1981) deployed free-floating traps off the Monterey
Peninsula in California. They observed a decrease in numerical FP fluxes in
the upper 500 m, but FP fluxes increased by a factor of 2.7 from 500 to
1500 m. This increase was largely due to elliptical FPs, suggesting the
presence of deep resident (or overwintering) zooplankton populations (Urrere
and Knauer, 1981). The authors concluded that organic material reaches the
deep ocean (supporting deep resident zooplankton populations) through in situ
repackaging of detritus and via heterotrophy as well as inputs from migrating
populations, emulating the “ladder of migrations” first proposed by
Vinogradov (1962). More recently, Miquel et al. (2015) deployed drifting
sediment traps in the upper 210 m of the Beaufort Sea, observing increases
in elliptical FPs with depth and decreases in cylindrical FPs. They explain
this by the presence of omnivorous and carnivorous zooplankton in the
mesopelagic, whose primary food sources are the vertical flux of organic
matter and other organisms. In agreement with our observations, Suzuki et
al. (2003) observed large declines in cylindrical FPs between sediment traps
deployed at 537 and 796 m in the marginal ice zone of Antarctica, and
increases in elliptical FPs over the same depth range. They suggest that
coprophagous feeding and new FP production can explain some of the loss of
cylindrical FPs, with fragmentation into small sinking particles explaining
the rest. As different zooplankton species produce different shapes of FPs, a
change in FP shape can suggest a change in zooplankton community structure.</p>
      <p>At both P2 and P3, we saw an increase in the contribution of ovoid FPs to the
total number of FPs between the upper mesopelagic (MSC samples) and
bathypelagic (ST samples), increasing by factors of 4.5 and 8.5 at P2 and P3
respectively. This suggests that there is either an input of ovoid FPs at
depth, or that cylindrical–elliptical and round FP are preferentially
remineralised in the mesopelagic. We made both size and shape measurements of
FPs in the upper mesopelagic and bathypelagic, allowing us to discern if there
is indeed production of new ovoid FPs at depth. At both P2 and P3, we observed
size classes of ovoid FPs in the ST (0.003–0.008 mm<inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> that were not
present in the MSC, which rules out selective remineralisation. Furthermore,
the intact shape of ovoid FPs in the ST argues against fragmentation as a
cause of this change in size distribution. In agreement with Manno et
al. (2015), we observed that ovoid FPs in the ST showed fewer signs of
fragmentation and were more intact than cylindrical or elliptical FPs at both
P2 and P3. Estimates of FPC in ST samples indicates that these ovoid FPs also
make a large contribution to the flux of POC and, as such, their production
at depth represents a mechanism for long-term storage of carbon in the ocean.
Hence, we conclude that FP fluxes to depth are augmented by FPs produced in
situ at depth.</p>
      <p>We can estimate the size class of zooplankton producing the FPs we find at
depth based on the FP size class and Eq. (1). We estimate that zooplankton
with a
PL of 2.6–3.8 and 2.6–3.2 mm could have produced the FPs we observed in the
ST, based on dominant size classes of FPs of 0.003–0.008 and
0.003–0.005 mm<inline-formula><mml:math id="M182" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> at P3 and P2 respectively. Of the species within these
size classes recorded in the Bongo net tows at P2 and P3, <italic>Calanoides acutus IV</italic> and <italic>Metridia gerlachei</italic> adults were the most abundant and
may be responsible for the flux of these FPs to the ST. <italic>C.acutus </italic>is a
known seasonal migrator in the region, occurring in the upper 200 m in summer
but residing deeper (<inline-formula><mml:math id="M183" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 200–600 m) in spring (Ward et al., 2012).
<italic>Metridia</italic> spp. are also known migrators (Ward et al., 1995, 2006b;
Ward and Shreeve, 1999), found to be one of the more abundant species in the
500–1000 m depth range based on <italic>Discovery Investigations</italic> to the
west of the Drake Passage (Ward et al., 2014). Ward et al. (2014) find the
most abundant species in this depth range to be <italic>Oncaea</italic> spp.,
<italic>Oithona frigida</italic> and <italic>Microcalanus pygmaeus</italic>, all of which are
too small (<inline-formula><mml:math id="M184" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 0.5 mm PL) to produce the larger FPs that were dominant in
the ST. Similar to the situation in the epipelagic and upper mesopelagic, we
suggest that although small species are more abundant, they produce small
FPs,
which sink slowly and are rapidly remineralised. It is likely that it is the
less abundant larger carnivores and recyclers in the lower mesopelagic that
are contributing more to the flux of carbon to the deep ocean through the
production of large FPs, agreeing with the modelling study of Stamieszkin et
al. (2015). Calanoid copepod families <italic>Aetideidae</italic>,
<italic>Heterorhabdidae, Metridinidae</italic>, and <italic>Euchaetidae</italic> are also
common in the mesopelagic of the Scotia Sea and surrounding area (Laakmann et
al., 2009; Ward et al., 1995; Ward and Shreeve, 1999), and are of an
appropriate size (as adults or other copepodite stages) to produce the larger
FPs that were dominant in the ST. Although we can only speculate as to the
possible producers of FPs in the ST, it is clear that appropriately sized
zooplankton are sufficiently abundant in the mesopelagic to influence the
flux of FPs to the ST.</p>
      <p>When comparing data sets collected via different methods (in this case Bongo
nets, MSC and ST), it is important to consider the different time and space
scales over which they measure. The zooplankton Bongo net samples integrated
vertically over the top 200 m and temporally over the period over which
replicate samples were taken (a few days at each site for both cruises). MSC
samples were an instantaneous snapshot of the particle flux and, at a
deployment depth of 110 m below the mixed layer, they integrate over spatial
scales of tens of kilometres (based on median sinking rates at P2 and P3 and
a current speed of 10 cm s<inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Conversely, ST samples captured the
flux over a 15 day period and at a deployment depth of 1500 and 2000 m had a
potential sample collection area on spatial scales of hundreds of kilometres
(based on the same conditions). If zooplankton communities vary significantly
over tens of kilometres then this would reduce the direct comparability of
MSC and ST data. Previous studies in the region suggest that much of the
Scotia Sea is populated by a single zooplankton “community”, but there are
regional differences in the stage of phenological development (Ward et al.,
2006a), implying that the species composition may not vary on short spatial
scales. Changes in the species stage are likely tied to changes in
phytoplankton productivity, as for much of the time, Southern Ocean
zooplankton are food limited (Ward et al., 2006a). Cluster analysis of
phytoplankton in the Scotia Sea reveals distinct communities (in terms of
abundance, community structure, and productivity) on spatial scales of
hundreds of kilometres (Korb et al., 2012), and hence we would not expect
significant changes in the stage-structure of zooplankton on the spatial
resolution of the MSC, making these results more comparable to those of the
ST. The high sinking rates of zooplankton FP means that their occurrence in
ST is representative of the conditions directly above the ST (Buesseler et
al., 2007). Slow-sinking particles spread out more as they sink, which
increases our uncertainty in depth comparisons of smaller FPs. However, the
spatial scale of zooplankton variability at our study site means that
slow-sinking FP particles reaching the ST likely reflect the same zooplankton
community structure as occurring directly above the ST. For each of our three
methods (nets, MSC, and ST), we take averages over multiple years, which should
also reduce the uncertainties associated with the various spatial and
temporal resolutions of the three methods. However, we acknowledge that the
different spatial and temporal scales of measurement could also contribute to
some of the vertical changes in FP shape and size structure that we observed.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Role of meso- and bathypelagic zooplankton</title>
      <p>Our data suggest that zooplankton residing below the euphotic layer repackage
sinking detritus and produce FPs, which are able to pass through the lower
mesopelagic and be collected in ST in the bathypelagic. Observations made at
P2 and P3 in autumn show that, during the night, the highest zooplankton
abundances are in the upper 125 m (C. Liszka, personal communication,
2016). However,
corresponding daytime surface abundances are typically lower, which may be
partially explained by certain species that migrate vertically in the water
column (C. Liszka, personal communication, 2016). We suggest that diel vertical migrators may
contribute to the relatively fresh FPs we found at depth. A modelling study by
Wallace et al. (2013) suggested that FPs penetrate deeper in the water column
when there is zooplankton vertical migration, with the deepest FP production
occurring when zooplankton undertake diel vertical migrations rather than
foray type feeding (multiple ascents and descents during a day). Resident
zooplankton populations were observed below 150 m depth, with a peak at
375–500 m, most notably at P3 (C. Liszka, personal communication,
2016), suggesting that
the deeper parts of the community, consisting of non-migrators or seasonal or
ontogenetic migrators are also important at our study site and could
repackage organic material in the upper mesopelagic, and may have produced
some of the intact FPs that we observed in our ST.</p>
      <p>The abundance of zooplankton typically declines rapidly over the upper
1000 m of the water column (Ward et al., 1995, 2014; Ward and Shreeve,
1999), suggesting that any new FP production below the depth of our MSC
samples is likely to take place in the upper to mid-mesopelagic where
zooplankton abundances are higher. Zooplankton are more concentrated in the
epipelagic; however, the total abundance of zooplankton in the meso- and
bathypelagic can be high due to the large depth extent of these layers. In
the Antarctic Zone (to the west of our study site), Ward et al. (2014) found
that the total depth integrated zooplankton abundance in the 250–2000 m
horizon (extrapolating abundances recorded at 750–1000 m down to 2000 m) is
about three-quarters (0.74) of the zooplankton abundance in the top 250 m.
Therefore it is likely that there is still substantial production of FPs in
the lower mesopelagic, and compared to FPs produced in the epipelagic, FPs
produced in the lower mesopelagic are subject to remineralisation processes
over a shorter distance, and therefore are more likely to reach the deep ocean intact.</p>
      <p><?xmltex \hack{\newpage}?>Despite the similarities in copepod abundances at P2 and P3, the numbers of
FPs collected at P3 were an order of magnitude higher than at P2. Surface
phytoplankton productivity at P3 is typically much higher than at P2, with
large blooms occurring in most years (Borrione and Schlitzer, 2013; Korb et
al., 2008, 2012). This may in part explain higher FP fluxes at the P3 site,
as in good feeding conditions (such as those measured during JR304; Belcher
et al., 2016b) FP production rates have been shown to be higher (Besiktepe
and Dam, 2002; Butler and Dam, 1994). The zooplankton community structure may
also affect the fate of FPs in the mesopelagic. Previous studies have found
relationships between POC export and the presence of microcopepod species,
suggesting that low POC export may be attributed to coprophagy and/or
coprorhexy (Suzuki et al., 2003; Svensen and Nejstgaard, 2003). More
recently, several studies have proposed that the main role of small
zooplankton species may be to fragment FPs rather than ingest them (Iversen
and Poulsen, 2007; Poulsen and Kiørboe, 2005; Reigstad et al., 2005).
Regardless of the mechanism, previous studies agree that high microcopepod
abundances can lead to increased FP retention. The ratio of small copepods to
large calanoids is higher at P2 (Fig. 2), which may result in greater losses
of FPs in the epipelagic and mesopelagic, resulting in lower numbers of FPs captured
in our MSC and ST at P2. Indeed, we see higher attenuation of FP fluxes at P2
than P3 between our measurement depths (Table 2).</p>
      <p>The flux of FPs reaching the deep ocean therefore depends not only on surface
production but also on the meso- and bathypelagic zooplankton populations
and the balance between FP retention and FP production. Our data implies that
in situ FP production in the mesopelagic accounted for additional fluxes of
FP to the bathypelagic at both P2 and P3. However, as there is the potential
for further working, fragmentation and remineralisation of FPs produced in the
mesopelagic, the gross deep FP production cannot be quantified here. We
therefore cannot determine whether higher FP fluxes at P3 are due primarily
to reduced FP attenuation or to increased FP production at depth; most likely
a combination of both mechanisms is taking place. Previous work in the
region has however found that in the upper-mesopelagic (mixed layer
depth to 200 m) FP attenuation is higher at P2 than P3 (Belcher et al., 2016b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Schematic to illustrate the possible mechanisms of deep FP
production that are suggested to be occurring at our study sites in the
Scotia Sea. In scenario 1, intact FP reach the deep ocean via vertical
migration of zooplankton, whereas, in scenario 2, FPs at depth result from in
situ repackaging of sinking detritus by deep-dwelling zooplankton. The actual
mechanisms occurring in the mesopelagic are likely to be a complex
combination of both scenarios.</p></caption>
          <?xmltex \igopts{width=193.47874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/1511/2017/bg-14-1511-2017-f07.png"/>

        </fig>

      <p>Our comparison of FP size, shape, and abundance in the upper mesopelagic and
lower bathypelagic agrees with previous hypotheses (Accornero et al., 2003;
Manno et al., 2015; Suzuki et al., 2003), that in situ FP production augments
the flux of FPs to depth in the Southern Ocean. We find that the occurrence of
intact FPs in deep ST could be explained by both vertical migrations of
zooplankton, and repackaging and in situ FP production by meso- and
bathypelagic zooplankton populations (Fig. 7). Taking an integrated surface
production of 1 g C m<inline-formula><mml:math id="M186" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M187" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (based on measurements by Korb et
al., 2012, to the northwest of South Georgia), and assuming an assimilation
efficiency of 66 % (Anderson and Tang, 2010; Head, 1992) during vertical
migration (left panel Fig. 7, scenario 1), we calculate that up to
340 mg C m<inline-formula><mml:math id="M188" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M189" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> could reach the depth of migration (this depth
will vary both between species and seasonally). In comparison, if FPs are
repackaged multiple times on their transit through the mesopelagic then FPs
will be assimilated multiple times, resulting in reduced transfer of carbon
when compared to diel vertical migration. For example, FPs that are
assimilated twice over the same vertical distance as a typical vertical
migration (right panel, Fig. 7, scenario 2), result in up to
115 mg C m<inline-formula><mml:math id="M190" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M191" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> reaching the same depth. The exact difference
in carbon transfer between these two routes (scenarios 1 and 2) will depend on
the number of repackaging steps over the migration depth, specific
assimilation efficiencies of the repackaging copepods as well as loss of FP
carbon via remineralisation. However, these calculations highlight that the
route by which the FPs are transferred to depth is a key control on the amount
of carbon reaching depth. Regardless of the feeding mode of these mesopelagic
zooplankton communities (detritivory, omnivory, or carnivory), production of
FPs at depth via both the aforementioned scenarios supports the transfer of
intact FPs to the deep ocean, supporting the sequestration of carbon on long
timescales. There is therefore a need to link meso- and bathypelagic
zooplankton communities (particularly the larger size classes) to carbon
fluxes within global biogeochemical models by refining the contribution of
different zooplankton size classes to carbon fluxes via their differential FP
production rates and sinking speed.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p>Data to this paper can be found in the Supplement.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/bg-14-1511-2017-supplement" xlink:title="pdf">doi:10.5194/bg-14-1511-2017-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p>We would like to thank the crew, officers and scientists aboard the
R.R.S. <italic>James Clark Ross</italic> during research cruises JR291 and JR304.
Particular thanks to Elena Ceballos Romero, Fred le Moigne, Andy Richardson,
and Manon Duret for their invaluable help with Marine Snow Catchers
deployments. Thanks to Cecilia Liszka for providing information on the deep
mesozooplankton community at our study site. Work was funded by the NERC studentship of Anna Belcher (NE/1362197). Fieldwork was supported by a
NERC AFI Collaborative Gearing Scheme grant to Stephanie Henson.
Geraint A. Tarling, and Clara Manno were supported by the Ocean Ecosystems
programme at British Antarctic Survey.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited
by: G. Herndl<?xmltex \hack{\newline}?> Reviewed by: two anonymous referees</p></ack><ref-list>
    <title>References</title>

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    <!--<article-title-html>Copepod faecal pellet transfer through the meso- and bathypelagic layers in the Southern Ocean in spring</article-title-html>
<abstract-html><p class="p">The faecal pellets (FPs) of zooplankton can be important
vehicles for the transfer of particulate organic carbon (POC) to the deep
ocean, often making large contributions to carbon sequestration. However,
the routes by which these FPs reach the deep ocean have yet to be fully
resolved. We address this by comparing estimates of copepod FP production to
measurements of copepod FP size, shape, and number in the upper mesopelagic
(175–205 m) using Marine Snow Catchers, and in the bathypelagic using
sediment traps (1500–2000 m). The study is focussed on the Scotia Sea,
which contains some of the most productive regions in the Southern Ocean,
where epipelagic FP production is likely to be high. We found that, although
the size distribution of the copepod community suggests that high numbers of
small FPs are produced in the epipelagic, small FPs are rare in the deeper
layers, implying that they are not transferred efficiently to depth.
Consequently, small FPs make only a minor contribution to FP fluxes in the
meso- and bathypelagic, particularly in terms of carbon. The dominant FPs in
the upper mesopelagic were cylindrical and elliptical, while ovoid FPs were
dominant in the bathypelagic. The change in FP morphology, as well as size
distribution, points to the repacking of surface FPs in the mesopelagic and
in situ production in the lower meso- and bathypelagic, which may be
augmented by inputs of FPs via zooplankton vertical migrations. The flux of
carbon to the deeper layers within the Southern Ocean is therefore strongly
modulated by meso- and bathypelagic zooplankton, meaning that the community
structure in these zones has a major impact on the efficiency of FP transfer
to depth.</p></abstract-html>
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