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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-14-2597-2017</article-id><title-group><article-title>The influence of episodic flooding on a pelagic ecosystem<?xmltex \hack{\newline}?> in the East China
Sea</article-title>
      </title-group><?xmltex \runningtitle{Effect of flooding on the East China Sea}?><?xmltex \runningauthor{C.-C. Chen et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Chen</surname><given-names>Chung-Chi</given-names></name>
          <email>ccchen@ntnu.edu.tw</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Gong</surname><given-names>Gwo-Ching</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Chou</surname><given-names>Wen-Chen</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5107-7978</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Chung</surname><given-names>Chih-Ching</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Hsieh</surname><given-names>Chih-Hao</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff4">
          <name><surname>Shiah</surname><given-names>Fuh-Kwo</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Chiang</surname><given-names>Kuo-Ping</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Life Science, National Taiwan Normal University, Taipei 116, Taiwan</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Institute of Marine Environment and Ecology, National Taiwan Ocean
University, Keelung 20224, Taiwan</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Research Center for Environmental Changes, Academia Sinica, Nankang Taipei 115, Taiwan</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Chung-Chi Chen (ccchen@ntnu.edu.tw)</corresp></author-notes><pub-date><day>22</day><month>May</month><year>2017</year></pub-date>
      
      <volume>14</volume>
      <issue>10</issue>
      <fpage>2597</fpage><lpage>2609</lpage>
      <history>
        <date date-type="received"><day>6</day><month>June</month><year>2016</year></date>
           <date date-type="rev-request"><day>27</day><month>June</month><year>2016</year></date>
           <date date-type="rev-recd"><day>11</day><month>April</month><year>2017</year></date>
           <date date-type="accepted"><day>27</day><month>April</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017.html">This article is available from https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017.pdf</self-uri>


      <abstract>
    <p>This study was designed to determine the effects of flooding on a pelagic
ecosystem in the East China Sea (ECS) with a focus on plankton activity and
plankton community respiration (CR). In July 2010, a flood occurred in the
Changjiang River. As a comparison, a variety of abiotic and biotic
parameters were monitored during this flooding event and during
a non-flooding period (July 2009). During the flood, the Changjiang diluted
water (CDW) zone covered almost two-thirds of the ECS, which was
approximately 6 times the area covered during the non-flooding period. The
mean nitrate concentration was 3-fold higher during the 2010 flood (6.2 vs.
2.0 <inline-formula><mml:math id="M1" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M in 2009). CR was also higher in the 2010 flood: 105.6 mg C m<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> vs. only 73.2 mg C m<inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in 2009. The higher
CR in 2010 could be attributed to phytoplankton respiration, especially at
stations in the CDW zone that were not previously characterized by low sea
surface salinity in 2009. In addition, zooplankton (&gt; 330 <inline-formula><mml:math id="M6" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) were another important component contributing to the high CR rate
observed during the 2010 flood; this was a period also associated with a significant
degree of <inline-formula><mml:math id="M7" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> drawdown. These results collectively suggest that the
2010 flood had a significant effect on the carbon balance in the ECS. This
effect might become more pronounced in the future, as extreme rainfall and
flooding events are predicted to increase in both frequency and magnitude
due to climate change.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Riverine runoff has a profound effect on the production and
consumption of organic carbon in coastal ecosystems (e.g., Dagg et al.,
2004; Hedges et al., 1997 and the references therein). Accompanying freshwater
discharge, a substantial amount of dissolved inorganic nutrients (DINs) is
routinely dispensed into coastal regions, thus enhancing primary productivity
(PP; e.g., Dagg et al., 2004; Nixon et al., 1996). In addition, a large
quantity of particulate and dissolved organic matter is discharged via
riverine input (e.g., Wang et al., 2012), and high rates of microbial
metabolism associated with this discharge have been observed in marine
environments (e.g., Hedges et al., 1994; Malone and Ducklow, 1990). River
plumes can extend for hundreds of kilometers along the continental shelf, as
in the case of the Amazon River (e.g., Müller-Karger et al.,
1988).</p>
      <p>Overall, the effects of river plumes on coastal ecosystems are strongly
related to the volume of the freshwater discharged (e.g., Chen et al.,
2009; Dagg et al., 2004; Tian et al., 1993). Thus, understanding how
freshwater discharge influences coastal ecological processes is an important
factor in modeling global carbon cycling in the ocean. Under projected
climate change scenarios, such heavy freshwater discharge events are
predicted to become even more pronounced in the near future because of the
dramatic frequency and magnitude increases in extreme rainfall events and
floods predicted to occur throughout the world in the coming decades
(Christensen and Christensen, 2003; Knox, 1993; Milly et al., 2002;
Palmer and Ralsanen, 2002).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F1" specific-use="star"><caption><p>Contour plots of salinity (SSS) and concentrations of nitrate
(NO<inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, phosphate (PO<inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and chlorophyll <inline-formula><mml:math id="M11" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in
the surface water (2–3 m) in the ECS during non-flooding (2009; left
panels) and flooding (2010; right panels) periods. Bottom depth
contours are shown as dashed lines both here and in Fig. 2. The sampling
stations in both periods are marked by an (x) both here and in Fig. 2.
The contour intervals of SSS and concentrations of nitrate, phosphate, and
Chl <inline-formula><mml:math id="M13" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> are 0.5, 1.0 <inline-formula><mml:math id="M14" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, 0.1 <inline-formula><mml:math id="M15" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, and 0.5 mg Chl m<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively, and the values of the respective contour lines (bold)
are 31, 3.0 <inline-formula><mml:math id="M17" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, 1.0 <inline-formula><mml:math id="M18" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, and 1.0 mg Chl m<inline-formula><mml:math id="M19" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. The
range for each parameter is shown at the top of each panel.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f01.png"/>

      </fig>

      <p>The East China Sea (ECS) has an approximate area of 0.5 <inline-formula><mml:math id="M20" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> km<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>
and is the largest marginal sea in the Western Pacific. A large amount of
freshwater (956 km<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> yr<inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is discharged annually into the ECS,
notably by the Changjiang (also called the Yangtze) River, which is the fifth largest
river in the world in terms of volume discharge (Liu et al., 2010).
On average, the maximum amount of discharge occurs in July, and the mean monthly
discharge has ranged from 33 955 to 40 943 m<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in years of
normal weather during the past decade (Gong et al., 2011; Xu and
Milliman, 2009). After being discharged into the ECS, freshwater mixes
with seawater to form the Changjiang diluted water (CDW) zone. The sea
surface salinity (SSS) of the CDW is <inline-formula><mml:math id="M27" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 31 (e.g., Beardsley et al.,
1985; Gong et al., 1996). In the CDW, especially in summer, the regional
carbon balance is regulated by high rates of plankton community respiration
(CR) and PP (Chen et al., 2006; Gong et al., 2003). The CR rates are
positively associated with riverine flow rates (Chen et al., 2009).</p>
      <p>In July 2010, a large flood occurred in the Changjiang River (Gong et
al., 2011). This event provided an opportunity to understand how flooding
affects the ECS shelf ecosystem. Comparative analyses were conducted in
which a number of physical, chemical, and biological parameters (notably CR)
were measured not only during this flood, but also during a period (July
2009) when the riverine flow was relatively low. The main objective of this
study was to reveal the effects of riverine input, particularly the
associated DINs, on plankton activities (e.g., phytoplankton,
heterotrophic bacteria, and zooplankton; &gt; 330 <inline-formula><mml:math id="M28" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) and how
they impact the CR in the ECS between periods of non-flooding and flooding.
In addition, the relationship between CR and the fugacity of CO<inline-formula><mml:math id="M29" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
(<inline-formula><mml:math id="M30" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was examined to determine the contribution of the plankton
communities to variations in <inline-formula><mml:math id="M32" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M33" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in periods of non-flooding and
flooding.</p>
</sec>
<sec id="Ch1.S2">
  <title>Materials and methods</title>
<sec id="Ch1.S2.SS1">
  <title>Study area and sampling protocol</title>
      <p>This study is part of the Long-term
Observation and Research of the East China Sea (LORECS) program. Samples
were collected from the ECS in the summers of 2009 (29 June  to  13 July) and
2010 (6   to 18 July) during two cruises on the R/V <italic>Ocean Researcher I</italic>. The sample stations were
located throughout the ECS shelf region (Fig. 1). In July 2010, the
discharge from the Changjiang River reached 60 527 m<inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which
was significantly higher than in the non-flooding year of 2009 (Gong et
al., 2011; Yu et al., 2009). Water samples were collected using
Teflon-coated Go-Flo bottles (20 L; General Oceanics Inc., Miami, FL, USA) mounted on a
General Oceanics Rosette<sup>®</sup> assembly (model 1015; General
Oceanics Inc.). At each station, six to nine samples were taken at depths of
3 to 50 m, depending on the depth of the water column. Subsamples were
taken for immediate analysis of DINs, chlorophyll <inline-formula><mml:math id="M36" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and bacterial
abundance. Plankton CR was also measured onboard from seawater subsamples.
The methods used to collect the hydrographic data and analyze the
aforementioned response variables followed Chen et al. (2006, 2013,
2009). Descriptions of the methods used are presented briefly in the
following sections. It should also be noted that portions of these results
were published by Chung et al. (2014) and Gong et al. (2011).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Physical and chemical hydrographics</title>
      <p>Seawater temperature, salinity, and
transparency were recorded throughout the water column using a Sea-Bird CTD
(Sea-Bird Scientific, Bellevue, WA, USA). Photosynthetically active radiation (PAR) was measured throughout the
water column using an irradiance sensor (4<inline-formula><mml:math id="M38" display="inline"><mml:mi mathvariant="italic">π</mml:mi></mml:math></inline-formula>; QSP-200L; Biospherical Instruments Inc., San Diego, CA, USA). The depth of
the euphotic zone (<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was taken as the penetration depth of 1 % of
the surface light. The mixed layer depth (<inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was based on the
potential density criterion of 0.125 units (Levitus, 1982).</p>
      <p>A custom-made flow injection analyzer was used for dissolved inorganic
nutrient (e.g., nitrate, phosphate, and silicate) analysis (Gong et al.,
2003). Integrated values for the nitrates and other variables assessed in
the water column above the <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were estimated using the trapezoidal
method, in which depth-weighted means are computed from vertical profiles
and then multiplied by the <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (e.g., Smith and
Kemp, 1995). The average nitrate concentration over the <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was calculated
from the vertically integrated value divided by the <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. This calculation
was adopted to determine the values of the other measured variables.</p>
      <p>The fugacity of CO<inline-formula><mml:math id="M45" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M46" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the surface waters was calculated
from dissolved inorganic carbon (DIC) and total alkalinity (TA) data using a
program designed by Lewis and Wallace (1998). For details of
the TA and DIC measurements, please see Chou et al. (2007).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Biological variables</title>
      <p>The water samples taken for Chl <inline-formula><mml:math id="M48" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> analysis were
immediately filtered through GF/F filter paper (Whatman, Maidstone, UK; 47 mm) and stored
in liquid nitrogen. The Chl <inline-formula><mml:math id="M49" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> retained on the GF/F filters was quantified
fluorometrically (Turner Designs, San Jose, CA, UAA; 10AU-005; Parsons et al., 1984).
When applicable, Chl <inline-formula><mml:math id="M50" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> was converted to carbon units using a C : Chl ratio of
52.9, which was previously estimated from the shelf waters of the ECS (Chang
et al., 2003). Surfer 11 (Golden Software, LLC, Golden, CO, USA) was used to estimate the total
Chl <inline-formula><mml:math id="M51" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> content integrated over the <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of both the ECS and the CDW (please
see below for details). This estimation was also adopted to determine the
total quantities for heterotrophic bacteria and zooplankton across the <inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
To compare, total plankton biomass was the summed biomass of phytoplankton,
bacterioplankton, and zooplankton over the <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>Heterotrophic bacteria samples were fixed in paraformaldehyde at a final
concentration of 0.2 % (<inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>) in the dark for 15 min. They were then
immediately frozen in liquid nitrogen and kept at <inline-formula><mml:math id="M56" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>80 <inline-formula><mml:math id="M57" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C prior to
analysis. The heterotrophic bacteria were stained with the nucleic
acid dye SYBR<sup>®</sup> Green I (emission <inline-formula><mml:math id="M58" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 530 <inline-formula><mml:math id="M59" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 30 nm)
at a 10<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>-fold diluted commercial solution (Molecular Probes, Eugene,
OR, USA; Liu et al., 2002). They were then identified and enumerated
using a flow cytometer (FACSAria; BD Biosciences, Franklin Lakes, NJ, USA). Known
numbers of fluorescent beads (TruCOUNT tubes; BD Biosciences) were
simultaneously used to calculate the original cell abundance in each sample.
The bacterial abundance was converted to carbon units using a conversion factor
of 20 <inline-formula><mml:math id="M61" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> g C cell<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Hobbie et al., 1977; Lee and Fuhrman,
1987).</p>
      <p>Zooplankton samples were collected across the whole water column (ranging
from 20 to 198 m, depending on the station) at selected stations using a
330 <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m mesh net with a 160 cm diameter opening. Upon retrieval of the
net, the contents of the cod-end were immediately preserved in 10 %
buffered formalin. The zooplankton samples were digitized to extract size
information (i.e., body width and length) using the ZooScan integrated
system (Hydroptic, L'Isle-jourdain, France), and the size information was used to calculate the ellipsoidal
bio-volume of zooplankton (Garcia-Comas, 2010). The biomass (carbon
units) of zooplankton was then calculated using the estimated bio-volume
following the equations of Alcaraz et al. (2003). To estimate the
biomass over the <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the total biomass of zooplankton over the whole water
column was multiplied by the fraction of the <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> relative to the depth of the
water column at all stations.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>The mean <inline-formula><mml:math id="M67" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD values for the different variables measured in the
surface water of the ECS during non-flooding (2009) and flooding (2010)
periods with the range of values in parentheses. The mean <inline-formula><mml:math id="M68" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD values for
stations in the area of the Changjiang diluted water (CDW) region are in
brackets. Variables include transparency (CTD<inline-formula><mml:math id="M69" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">TM</mml:mi></mml:msub></mml:math></inline-formula>; %), salinity (SSS),
temperature (SST; <inline-formula><mml:math id="M70" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C), fugacity of CO<inline-formula><mml:math id="M71" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M72" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M73" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>; <inline-formula><mml:math id="M74" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm), nitrate concentration (NO<inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M76" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M), phosphate
concentration (PO<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M78" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M), silicate concentration
(SiO<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M80" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M), chlorophyll <inline-formula><mml:math id="M81" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration (Chl <inline-formula><mml:math id="M82" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>; mg Chl m<inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, bacterial biomass (BB; mg C m<inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and plankton community
respiration (CR; mg C m<inline-formula><mml:math id="M85" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The euphotic depth (<inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; m)
and mixed layer depth (<inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; m) are also shown for each year.
Mann–Whitney rank-sum tests were used to identify temporal differences. For
reference, it should be noted that the difference between the CDW zone and
the other regions in the ECS in each year was significant for most of the
variables (<inline-formula><mml:math id="M89" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.05), except nitrate and phosphate in 2009.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Variable</oasis:entry>  
         <oasis:entry colname="col2">2009 (non-flooding period)</oasis:entry>  
         <oasis:entry colname="col3">2010 (flood)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">38.9 <inline-formula><mml:math id="M95" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 36.4 (1.3–190.6)</oasis:entry>  
         <oasis:entry colname="col3">33.4 <inline-formula><mml:math id="M96" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 17.3 (10.1–82.2)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[16.8 <inline-formula><mml:math id="M97" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7.4]</oasis:entry>  
         <oasis:entry colname="col3">[24.8 <inline-formula><mml:math id="M98" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 10.7]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">13.7 <inline-formula><mml:math id="M100" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7.3 (5–37)</oasis:entry>  
         <oasis:entry colname="col3">11.3 <inline-formula><mml:math id="M101" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6.6 (4–35)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[7.3 <inline-formula><mml:math id="M102" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.6]</oasis:entry>  
         <oasis:entry colname="col3">[7.9 <inline-formula><mml:math id="M103" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.6]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CTD<inline-formula><mml:math id="M104" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">TM</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">76.7 <inline-formula><mml:math id="M105" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 12.2 (37.2–86.3)</oasis:entry>  
         <oasis:entry colname="col3">80.5 <inline-formula><mml:math id="M106" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.4 (67.7–88.5)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[70.0 <inline-formula><mml:math id="M107" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4.9]</oasis:entry>  
         <oasis:entry colname="col3">[78.4 <inline-formula><mml:math id="M108" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4.3]<inline-formula><mml:math id="M109" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">SSS</oasis:entry>  
         <oasis:entry colname="col2">32.62 <inline-formula><mml:math id="M110" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.07 (23.80–34.11)</oasis:entry>  
         <oasis:entry colname="col3">30.32 <inline-formula><mml:math id="M111" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.60 (19.33–34.27)<inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[29.24 <inline-formula><mml:math id="M113" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.52]</oasis:entry>  
         <oasis:entry colname="col3">[27.95 <inline-formula><mml:math id="M114" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.03]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">SST</oasis:entry>  
         <oasis:entry colname="col2">26.8 <inline-formula><mml:math id="M115" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.7 (23.3–29.6)</oasis:entry>  
         <oasis:entry colname="col3">26.1 <inline-formula><mml:math id="M116" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.2 (21.0–30.0)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[25.0 <inline-formula><mml:math id="M117" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.9]</oasis:entry>  
         <oasis:entry colname="col3">[25.1 <inline-formula><mml:math id="M118" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.7]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M119" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M120" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">362.9 <inline-formula><mml:math id="M121" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 101.2 (118.7–599.8)</oasis:entry>  
         <oasis:entry colname="col3">297.6 <inline-formula><mml:math id="M122" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 79.0 (178.7–454.2)<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[230.4 <inline-formula><mml:math id="M124" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 105.3]</oasis:entry>  
         <oasis:entry colname="col3">[248.6 <inline-formula><mml:math id="M125" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 54.5]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NO<inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">2.0 <inline-formula><mml:math id="M127" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.3 (0.0–24.3)</oasis:entry>  
         <oasis:entry colname="col3">6.2 <inline-formula><mml:math id="M128" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9.8 (0.0–37.6)<inline-formula><mml:math id="M129" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[4.0 <inline-formula><mml:math id="M130" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9.1]</oasis:entry>  
         <oasis:entry colname="col3">[10.3 <inline-formula><mml:math id="M131" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 11.3]<inline-formula><mml:math id="M132" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">PO<inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.13 <inline-formula><mml:math id="M134" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.17 (0.00–0.83)</oasis:entry>  
         <oasis:entry colname="col3">0.17 <inline-formula><mml:math id="M135" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.30 (0.00–1.71)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[0.13 <inline-formula><mml:math id="M136" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.07]</oasis:entry>  
         <oasis:entry colname="col3">[0.23 <inline-formula><mml:math id="M137" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.37]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">SiO<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">5.8 <inline-formula><mml:math id="M139" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.9 (1.5–24.5)</oasis:entry>  
         <oasis:entry colname="col3">6.4 <inline-formula><mml:math id="M140" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7.8 (0.6–36.4)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[9.8 <inline-formula><mml:math id="M141" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7.2]</oasis:entry>  
         <oasis:entry colname="col3">[9.1 <inline-formula><mml:math id="M142" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9.2]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Chl <inline-formula><mml:math id="M143" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.98 <inline-formula><mml:math id="M144" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.52 (0.12–4.41)</oasis:entry>  
         <oasis:entry colname="col3">1.26 <inline-formula><mml:math id="M145" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.27 (0.03–5.32)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[2.23 <inline-formula><mml:math id="M146" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.46]</oasis:entry>  
         <oasis:entry colname="col3">[1.83 <inline-formula><mml:math id="M147" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.35]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">BB</oasis:entry>  
         <oasis:entry colname="col2">39.8 <inline-formula><mml:math id="M148" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33.7 (10.6–184.8)</oasis:entry>  
         <oasis:entry colname="col3">20.4 <inline-formula><mml:math id="M149" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 16.5 (3.6–90.2)<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[54.9 <inline-formula><mml:math id="M151" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 39.6]</oasis:entry>  
         <oasis:entry colname="col3">[24.4 <inline-formula><mml:math id="M152" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 18.6]<inline-formula><mml:math id="M153" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CR</oasis:entry>  
         <oasis:entry colname="col2">73.2 <inline-formula><mml:math id="M154" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 76.9 (2.7–311.9)</oasis:entry>  
         <oasis:entry colname="col3">105.6 <inline-formula><mml:math id="M155" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 66.7 (10.9–325.3)<inline-formula><mml:math id="M156" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[172.0 <inline-formula><mml:math id="M157" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 109.2]</oasis:entry>  
         <oasis:entry colname="col3">[142.0 <inline-formula><mml:math id="M158" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 61.2]</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M91" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01. <inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>*</mml:mo><mml:mo>*</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M93" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001.</p></table-wrap-foot></table-wrap>

      <p>The plankton CR, which was calculated as the decrease in dissolved oxygen
(O<inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> during dark incubation (Gaarder and Grann, 1927), was
measured in samples collected from most stations, with two initial and two
dark treatment samples taken from four to six depths (depth intervals of 3, 5, 10,
15, 20, and/or 25 m depending on the depth of the water column) within the
<inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at each station. The treatment samples were siphoned into 350 mL
biological oxygen demand (BOD) bottles and incubated for 24 h in a dark
chamber filled with running surface water. The maximum temperature changes were
1.33 <inline-formula><mml:math id="M161" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.81 and 2.70 <inline-formula><mml:math id="M162" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.43 <inline-formula><mml:math id="M163" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (mean <inline-formula><mml:math id="M164" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD)
during each incubation in 2009 and 2010, respectively. The concentration of
O<inline-formula><mml:math id="M165" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was measured by a direct spectrophotometry method (Pai et
al., 1993). The precision of this method was calculated as the root mean
square of the difference between the duplicate samples and was found to be
0.02 and 0.03 mg L<inline-formula><mml:math id="M166" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in 2009 and 2010, respectively. The precision
for the initial samples in both periods was &lt; 0.01 mg L<inline-formula><mml:math id="M167" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The
difference in the O<inline-formula><mml:math id="M168" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentration between the initial and the dark
treatment was used to compute the CR. A respiration quotient of 1 was
assumed in order to convert the respiration from oxygen units to carbon
units (Hopkinson, 1985; Parsons et al., 1984).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>Comparison of hydrographic patterns between flooding and non-flooding
periods</title>
      <p>In 2010, the Changjiang River began to flood in late May or early June. The
mean monthly water discharge was 60 527 m<inline-formula><mml:math id="M169" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M170" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and the suggested
discharge rate for flooding was 4–6 <inline-formula><mml:math id="M171" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M172" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M173" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M174" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, making it
the largest recorded flooding of the Changjiang River over the last decade
(<uri>http://yu-zhu.vicp.net/</uri>). This rate was almost 2 times larger than that
recorded in the non-flooding period in July 2009 (33 955 m<inline-formula><mml:math id="M175" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M176" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>;
Gong et al., 2011; Yu et al., 2009). During the flood, a tremendous
quantity of freshwater was delivered into the ECS, and the low salinity of
the sea surface (SSS <inline-formula><mml:math id="M177" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 31) covered almost two-thirds of the continental
shelf (Fig. 1b). The SSS in the ECS during the 2010 flood was significantly
lower than during the 2009 non-flooding survey period; the mean (<inline-formula><mml:math id="M178" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>SD
for this and all parameters discussed henceforth) values were 30.32 (<inline-formula><mml:math id="M179" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.60) and 32.62 (<inline-formula><mml:math id="M180" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.07), respectively (Table 1). During periods of
high discharge from the river, particularly during the summer, the CDW zone
is generally distributed within the 60 m isobath region between the
latitudes of 27 and 32<inline-formula><mml:math id="M181" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N along the coast (e.g.,
Beardsley et al., 1985; Gong et al., 1996). During the 2010 flood, the CDW
dispersed towards the south and east and reached as far as the 100 m isobath
(Fig. 1b). The substantial quantity of freshwater discharged into the ECS is
also reflected in the coverage area of the CDW (e.g., Gong et al., 2011);
in the 2010 flood, the CDW area (111.7 <inline-formula><mml:math id="M182" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M183" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> km<inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was
approximately 6 times larger than in the 2009 non-flooding period (19.0 <inline-formula><mml:math id="M185" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M186" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> km<inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p>Although the mean SSS differed significantly between the flooding and
non-flooding periods, there was no difference in the temperature of the sea
surface (SST; Table 1). The mean values of the SST in 2009 (26.8 <inline-formula><mml:math id="M188" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.7)
and 2010 (and 26.1 <inline-formula><mml:math id="M189" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.2 <inline-formula><mml:math id="M190" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) were within the range of
the mean SST in the ECS in summer (Chen et al., 2009). The mixed layer
depth (<inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> did not significantly vary between survey periods: 13.7
(<inline-formula><mml:math id="M192" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7.3) m in 2009 and 11.3 (<inline-formula><mml:math id="M193" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6.6) m in 2010 (Table 1). However,
the average <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was shallower than documented previously in the summer
in the ECS (with a range from 16.8 to 28.2 m; Chen et al., 2009). The euphotic
depth (<inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was not significantly deeper in 2009 (38.9 <inline-formula><mml:math id="M196" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 36.4 m)
than in 2010 (33.4 <inline-formula><mml:math id="M197" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 17.3 m; Table 1). Regarding the <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the
average <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the ECS was also shallower than in a previous study
conducted during the summer (Chen et al., 2009). The shallower <inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
could have been indirectly influenced by the transmittance of the seawater.
The average transparency in summer in the ECS over the 2003–2008 period was
81.9 % (C. C. Chen, unpublished data). The average transparency values of
the ECS in 2009 and 2010 were 76.7 and 80.5 %, respectively (Table 1).
The average transparency for the CDW zone was lower in 2009 (70.0 %) and
higher high in 2010 (78.4 %) compared to the previous 6-year average
(72.7 %; C. C. Chen, unpublished data). This might also explain why the <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
in the CDW in 2009 was only 16.8 m (Table 1).</p>
      <p>These findings suggest that the growth of phytoplankton might be limited by
the availability of light, especially in the CDW zone in 2009. Generally,
the transparency of the coastal ocean might be low during flooding periods
due to the riverine discharge of terrestrial matter. A low transparency value
was documented in June 2003 in the ECS, during which the CDW area was 43.1 <inline-formula><mml:math id="M202" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M203" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> km<inline-formula><mml:math id="M204" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M205" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 40 % of the CDW area of the 2010
flood; Chen et al., 2009), and the average transparency values for the ECS
and the CDW were 70.9 and 66.0 %, respectively (C.C. Chen, unpublished
data). The average transparency in the CDW in 2010 (78.4 %) was higher
than the previous 6-year average (72.7 %). This could be partially
explained by the fact that most large particulates from terrestrial sources
might have been confined to and precipitated in the coastal region, not in
the expanded CDW region (e.g., Chung et al., 2012). Furthermore, it
should also be noted that the 2010 sampling period was 1 month after the
beginning of this flood. In estuarine and coastal regions, phytoplankton
blooms normally occur within 2–3 weeks after a heavy rainfall event
(e.g., Hsieh et al., 2012; Meng et al., 2016, 2015;
Mulholland et al., 2009). Therefore, it is reasonable to speculate that
plankton communities were in the late phase of succession in this flood
event. The transparency during the 2010 sampling period might have then
increased due to organic matter (particulate and dissolved) having been
taken up and transferred to higher trophic levels.</p>
      <p>In general, a large quantity of dissolved inorganic nutrients is delivered
from the Chinese coast to the ECS during the wet season (May to
September; Chen et al., 2013, 2009; Gong et al., 1996). A high
concentration of nitrates in the fluvial discharge of the Changjiang River
was documented in the ECS during the 2010 flood. Furthermore, there was (1) a
negative linear relationship between SSS and nitrate concentration
(<inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.37, <inline-formula><mml:math id="M207" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001, <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 37), (2) a negative linear
relationship between SSS and silicate concentration (<inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.60, <inline-formula><mml:math id="M210" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001, <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 37), and (3) no correlation between SSS and phosphate
concentration. The nitrate concentration (Table 1) was significantly higher in
the surface waters of the ECS in the 2010 (6.2 <inline-formula><mml:math id="M212" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9.8 <inline-formula><mml:math id="M213" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M) flood
than in the 2009 non-flooding period (2.0 <inline-formula><mml:math id="M214" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.3 <inline-formula><mml:math id="M215" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M), and similar
nitrate concentration differences were perpetuated between sampling times
over the <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (data not shown). During the 2010 flood, the mean nitrate
concentration, either in the surface water or averaged over the <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, was
higher than or comparable to that documented during periods of high riverine
discharge in the ECS (Chen et al., 2009; Gong et al., 1996). Nitrate
levels reached 37.6 <inline-formula><mml:math id="M218" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M in the surface water during the 2010 flood, and
the highest nitrate concentrations were observed within the CDW (Fig. 1d).</p>
      <p>The phosphate concentration in the surface water (Table 1) did not differ
between the 2009 non-flooding period (0.13 <inline-formula><mml:math id="M219" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.17 <inline-formula><mml:math id="M220" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M) and the
2010 flood (0.17 <inline-formula><mml:math id="M221" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.30 <inline-formula><mml:math id="M222" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M), nor did it differ in the CDW zone
between study years (0.23 and 0.13 <inline-formula><mml:math id="M223" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, respectively). However, it
should be noted that there was one station with an extremely high phosphate
concentration (1.71 <inline-formula><mml:math id="M224" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M) in the surface water in the CDW zone during the
2010 flood (Fig. 1f), during which the mean molar ratio of nitrate to
phosphate (N / P) over the entire ECS was 22.3 <inline-formula><mml:math id="M225" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 20.9. The high N / P
molar ratio was even more pronounced in the CDW; it was higher than the
Redfield ratio for N : P (i.e., 16) at 14 of the 20 stations and averaged at 40.4 (<inline-formula><mml:math id="M226" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 22.6). This value was comparable to that of the CDW during high
riverine flow periods in the ECS in summer (Chen et al., 2006). During
the non-flooding period, the N / P molar ratio was lower than 16 with a mean
value of 11.5 (<inline-formula><mml:math id="M227" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 20.8).</p>
      <p>It has been suggested that phytoplankton growth might be regulated by the
availability of nutrients or the N / P ratio of the available nutrient pool
in the ECS (Gong et al., 1996; Harrison et al., 1990). The results of
this study indicate that in the 2009 non-flooding period, the phytoplankton
biomass might have been regulated by the availability of dissolved inorganic
nitrogen to a greater extent than it was during the 2010 flood.
The phytoplankton biomass might have also been limited by nitrate and silicate
levels in 2010. Based on nutrient levels and the N / P molar ratio, however,
phytoplankton growth was more likely limited by phosphate, especially in the
CDW zone during the 2010 flood (please refer to Sect. 3.2 for details.).
Phytoplankton growth limited by different inorganic nutrients has been
observed in estuaries and coastal regions, such as Chesapeake Bay in the
United States (Fisher et al., 1992; Harding, 1994). In the ECS,
phosphates have been frequently found as a factor limiting phytoplankton
growth, especially in the CDW (Chen et al., 2004; Gong et al., 1996;
Harrison et al., 1990).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Plankton activity associated with the Changjiang River flood</title>
      <p>Following the discharge of fluvial nutrients into the ECS, phytoplankton are
generally abundant in the CDW region. The Chl <inline-formula><mml:math id="M228" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration in the CDW has even
reached bloom criteria (&gt; 20 mg Chl m<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in past years in
the ECS (Chen et al., 2009, 2003). Surprisingly, the
phytoplankton biomass was not as high as expected in this study, even though
a high nitrate concentration was observed during the 2010 flood. The mean
values of Chl <inline-formula><mml:math id="M230" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> in the surface water of the ECS in 2009 and 2010 were 0.98 (<inline-formula><mml:math id="M231" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.52) and 1.26 (<inline-formula><mml:math id="M232" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.27) mg Chl m<inline-formula><mml:math id="M233" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively (Table 1). However, these mean values were still at the high end of the Chl <inline-formula><mml:math id="M234" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
concentration range normally documented in the ECS in the mid-summer through
July–August (Chen et al., 2009). In both periods, the
phytoplankton biomass in the surface water was generally higher in the CDW
than in other regions of the ECS (Fig. 1g and h). For example, in the 2010
flood, the maximum Chl <inline-formula><mml:math id="M235" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> value reached 5.32 mg Chl m<inline-formula><mml:math id="M236" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the CDW (Table 1; Fig. 1h). In the 2010 flood, the Chl <inline-formula><mml:math id="M237" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> values were positively correlated
with nitrate and silicate concentrations (all <inline-formula><mml:math id="M238" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001), but not
phosphate concentrations (<inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.09), in the surface water. The linear
relationship between Chl <inline-formula><mml:math id="M240" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and phosphate values in the surface water,
however, became significant (<inline-formula><mml:math id="M241" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001) if one outlier with a
markedly high phosphate concentration (1.71 <inline-formula><mml:math id="M242" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M) was excluded from the
analysis (Fig. 1f). In the 2009 non-flooding period, the Chl <inline-formula><mml:math id="M243" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration
was significantly, positively, and linearly correlated with concentrations
of all measured nutrients: nitrate, silicate, and phosphate (<inline-formula><mml:math id="M244" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01
in all cases).</p>
      <p>The spatial distribution pattern of Chl <inline-formula><mml:math id="M245" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> documented in this study was
similar to that found in previous studies of the ECS (Gao and Song, 2005;
Gong et al., 2011), and phytoplankton biomass in the surface water (Table 1) or averaged over the <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (data not shown) did not differ significantly
between 2009 and 2010. In the 2010 flood, primary production (PP) in the
surface water was 62.1 (<inline-formula><mml:math id="M247" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33.8) mg C m<inline-formula><mml:math id="M248" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M249" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which is comparable to
values documented in the ECS in summer by Chen et al. (2009). In
contrast, the PP : Chl <inline-formula><mml:math id="M250" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> value was higher in the 2010 flood
(27.1 <inline-formula><mml:math id="M251" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 17.2 mg C mg Chl<inline-formula><mml:math id="M252" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> compared to the value documented (19.7 <inline-formula><mml:math id="M254" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.5 mg C mg Chl<inline-formula><mml:math id="M255" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
by Chen et al. (2009). Gong et al. (2011) estimated that over the past decade, the average rate of carbon
fixation during flooding periods was about 3 times higher than during
non-flooding periods, and the carbon fixation rate reached
176.0 <inline-formula><mml:math id="M257" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M258" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> t C d<inline-formula><mml:math id="M259" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the CDW during the 2010 flood (Gong et al., 2011).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p>Total area (<inline-formula><mml:math id="M260" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>10<inline-formula><mml:math id="M261" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> km<inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of the East China Sea (ECS) and
Changjiang diluted water (CDW) region (in brackets), as well as bacterial
(BB; <inline-formula><mml:math id="M263" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M264" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> kg C) and zooplankton (Zoo; <inline-formula><mml:math id="M265" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M266" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> kg C) biomass over
the euphotic depth integrated for the entire ECS and CDW region (in
brackets) during non-flooding (2009) and flooding (2010) periods.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Variables</oasis:entry>  
         <oasis:entry colname="col2">2009</oasis:entry>  
         <oasis:entry colname="col3">2010</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(non-flooding period)</oasis:entry>  
         <oasis:entry colname="col3">(flood)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Area</oasis:entry>  
         <oasis:entry colname="col2">186.0 [19.0]</oasis:entry>  
         <oasis:entry colname="col3">182.7 [111.7]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">BB</oasis:entry>  
         <oasis:entry colname="col2">222.5 [21.0]</oasis:entry>  
         <oasis:entry colname="col3">87.3 [47.7]</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Zoo</oasis:entry>  
         <oasis:entry colname="col2">410.3 [6.2]</oasis:entry>  
         <oasis:entry colname="col3">920.6 [560.8]</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>In summer, heterotrophic bacterioplankton are generally more abundant in the
CDW of the ECS than in other regions (Chen et al., 2006,
2009). Chen et al. (2006) suggested that the growth of bacteria along the
coast might be stimulated by the substantial amount of organic matter
derived from both autochthonous marine production and fluvial runoff. This
spatial distribution pattern was also observed in 2009 and 2010. In the 2009
non-flooding period, the mean bacterial biomass in the surface water of the
CDW was 77.5 (<inline-formula><mml:math id="M267" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 55.7) mg C m<inline-formula><mml:math id="M268" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, over 2-fold higher than in all
other areas (31.0 <inline-formula><mml:math id="M269" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 18.6 mg C m<inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Their mean values in the 2010
flood were 24.4 (<inline-formula><mml:math id="M271" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 18.6) and 15.0 (<inline-formula><mml:math id="M272" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 11.5) mg C m<inline-formula><mml:math id="M273" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the
CDW and other regions, respectively. Further analyses revealed that the
bacterial biomass in the surface water was positively and linearly
associated with Chl <inline-formula><mml:math id="M274" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentrations in both 2009 (<inline-formula><mml:math id="M275" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01) and 2010
(<inline-formula><mml:math id="M276" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.05). This finding applies to the values averaged over the <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
in both periods (both <inline-formula><mml:math id="M278" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01). However, the mean Chl <inline-formula><mml:math id="M279" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
concentrations in the surface water were slightly higher in 2010 than in
2009 (Table 1).</p>
      <p>In general, an increased amount of organic matter is delivered through
fluvial discharge into the ECS during periods of high riverine flow
(e.g., Wang et al., 2012). Although these results suggest that the
bacterial biomass might be higher in the flooding period than in the
non-flooding period, this difference was not verified through the use of averaged
bacterial biomass values in this study. The bacterial biomass in the surface
water was significantly higher in the 2009 non-flooding period than during
the 2010 flood with mean values of 39.8 (<inline-formula><mml:math id="M280" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 33.7) and 20.4 (<inline-formula><mml:math id="M281" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 16.5) mg C m<inline-formula><mml:math id="M282" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively (Table 1). The average bacterial biomass
over the <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was even more pronounced in 2009 than in 2010 (data not shown).
However, the total bacterial biomass in the CDW zone was 2 times higher in
2010 than in 2009 with values of 47.7 and 21.0 <inline-formula><mml:math id="M284" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M285" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> kg C,
respectively (Table 2). A potential cause of the low average bacterial
biomass observed during the 2010 flood might be protozoan grazing. Protozoa
have been recognized as important microbial grazers in the ECS and in many
coastal ecosystems (e.g., Chen et al., 2009, 2003; Sherr and
Sherr, 1984). Although protozoan abundance was not measured in this study, a
high production rate of nanoflagellates was observed in the southern ECS
with mean values of 0.46 <inline-formula><mml:math id="M286" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C L<inline-formula><mml:math id="M287" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M288" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> during periods of high
riverine flow (Tsai et al., 2005).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Contour plots of plankton community respiration (CR; mg C m<inline-formula><mml:math id="M289" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> over the euphotic zone of the ECS during <bold>(a)</bold> non-flooding (2009)
and <bold>(b)</bold> flooding (2010) periods. The contour interval is 10 mg C m<inline-formula><mml:math id="M291" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M292" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The CR range is shown at the top of each panel.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f02.png"/>

        </fig>

      <p>Zooplankton, especially microzooplankton, are amongst the most important
contributors to plankton CR (Calbet and Landry, 2004;
Hernández-León and Ikeda, 2005; Hopkinson et al., 1989).
Unfortunately, microzooplankton were not measured in this study. Instead,
zooplankton (&gt; 330 <inline-formula><mml:math id="M293" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) were sampled across the whole water
column. However, the average biomass of zooplankton over the <inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can still be
estimated, and the mean values for the 2010 flood and the 2009 non-flooding
period were calculated as 105.7 (<inline-formula><mml:math id="M295" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 144.4) and 22.6 (<inline-formula><mml:math id="M296" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 25.7) mg C m<inline-formula><mml:math id="M297" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively; this difference was statistically significant
(<inline-formula><mml:math id="M298" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01). The average zooplankton biomass over the <inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for the CDW
zone was 90-fold higher in 2010 than in 2009 (Table 2), suggesting that the
flood may have had a significant effect on zooplankton biomass.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Relationships between plankton community respiration (CR; mg C m<inline-formula><mml:math id="M300" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(a)</bold> chlorophyll <inline-formula><mml:math id="M302" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration
(Chl <inline-formula><mml:math id="M303" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>; mg Chl m<inline-formula><mml:math id="M304" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
and <bold>(b)</bold> bacterial biomass (mg C m<inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for all data from non-flooding
(2009; <inline-formula><mml:math id="M306" display="inline"><mml:mo>∘</mml:mo></mml:math></inline-formula>) and flooding (2010; <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:mo>•</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> periods. Linear regressions of
the
data from 2009 (solid lines) and 2010 (dashed lines), as well as the
respective <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M309" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values, have also been included.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>Effects of Changjiang River flooding on plankton community
respiration</title>
      <p>Plankton CR is typically defined as the integrated rate of organic carbon
consumption by plankton communities (e.g., Hopkinson  et al., 1989;
Rowe et al., 1986). In summer, the mean CR rate in the surface waters of the
ECS ranges from 52.2 to 128.4 mg C m<inline-formula><mml:math id="M310" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M311" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Chen et al., 2006, 2009), and it is significantly correlated with fluvial
discharge from the Changjiang River (Chen et al., 2009). In this study,
the CR in the surface water ranged from 2.7 to 311.9 mg C m<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M313" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> with a mean value of
73.2 (<inline-formula><mml:math id="M314" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 76.9) mg C m<inline-formula><mml:math id="M315" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M316" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the 2009 non-flooding period (Table 1). During the 2010 flood,
the mean rate in the surface water of 105.6 (<inline-formula><mml:math id="M317" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 66.7) mg C m<inline-formula><mml:math id="M318" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M319" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> was significantly higher than in 2009 (<inline-formula><mml:math id="M320" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; Table 1),
and CR ranged from 10.9 to 325.3 mg C m<inline-formula><mml:math id="M321" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M322" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Table 1). The CR rate
averaged over the <inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was statistically similar in both years (<inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.08) with mean values of
76.8 (<inline-formula><mml:math id="M325" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 53.0) and 66.8 (<inline-formula><mml:math id="M326" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 68.4) mg C m<inline-formula><mml:math id="M327" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. In terms of spatial distribution, higher CR
rates were mostly observed in the CDW region in both sampling periods,
especially along the coast (Fig. 2). Nevertheless, it should be noted that
the CDW zone was much larger in 2010 than in 2009.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Differences (<inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> between 2009 and 2010 in plankton community
respiration (CR; mg C m<inline-formula><mml:math id="M330" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> versus <bold>(a)</bold> chlorophyll <inline-formula><mml:math id="M332" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math id="M333" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>; mg Chl m<inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <bold>(b)</bold> bacterial
biomass (mg C m<inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> over the euphotic
zone at the same station. The <inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M337" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values have been shown for the
best-fit linear regression line (solid line). For reference, the vertical
and horizontal dashed lines represent inter-year differences of zero (i.e.,
<inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f04.png"/>

        </fig>

      <p>CR rates were regressed against the biomass of phytoplankton, heterotrophic
bacteria, and zooplankton (&gt; 330 <inline-formula><mml:math id="M339" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m). However, it should be
noted that microzooplankton were not measured in this study and were excluded from
our analysis. In this study, CR was significantly correlated with both Chl <inline-formula><mml:math id="M340" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration and bacterial biomass for both periods in the surface water and
when averaged over the <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (all <inline-formula><mml:math id="M342" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; Fig. 3). The contribution
of phytoplankton and/or bacterioplankton to CR is substantial in the ECS,
even though the relative contribution varies spatially and temporally
(Chen et al., 2006, 2009, 2003) Given the
importance of phytoplankton and bacterioplankton to CR rates in both years,
as well as their high densities measured herein, it seems likely that these
microbial groupings contributed substantially to the CR rate in both 2009
and 2010.</p>
      <p>Surprisingly, the mean Chl <inline-formula><mml:math id="M343" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration was slightly higher in 2010 than
in 2009, though the bacterial biomass was significantly lower in 2010 than in
2009 (Table 1). However, the CR rate was still higher in 2010 than in 2009.
In a further analysis, the differences (i.e., 2010 minus 2009) in the
average CR, Chl <inline-formula><mml:math id="M344" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration, and bacterial biomass over the <inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the
same station were calculated. The extent of such differences in CR was
significantly related to differences in Chl <inline-formula><mml:math id="M346" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration (<inline-formula><mml:math id="M347" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001) and bacterial biomass (<inline-formula><mml:math id="M348" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; Fig. 4). The linear
relationships were also statistically significant if the values of the
differences in the surface water were used (all <inline-formula><mml:math id="M349" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; data not
shown). Among the positive CR difference values (i.e., 20 of 33), 15
stations were also characterized by positive differences in Chl <inline-formula><mml:math id="M350" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>concentrations;
only 2 stations had positive differences in bacterial biomass.
Interestingly, the stations with positive Chl <inline-formula><mml:math id="M351" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> values in terms of concentration difference
were mostly located within the CDW region in 2010, with the exception
of the CDW in 2009. These results suggest that the higher CR in the 2010
flood might be attributed to phytoplankton, especially in the CDW. The mean
Chl <inline-formula><mml:math id="M352" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration was only slightly higher in 2010 than in 2009. Therefore,
it is reasonable to speculate that the differences in the CR rate in both
periods might have been partially caused by variation in the composition of
the phytoplankton communities. Although the CR attributed to different
components of the phytoplankton community was not measured in this study, it
has been documented elsewhere; for instance, dinoflagellates have higher
carbon-specific respiration rates than many other phytoplankton types
(e.g., Lopez-Sandoval et al., 2014).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Relationship between plankton community respiration (CR) and total
plankton biomass (expressed per carbon unit) over the <inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in 2009 (<inline-formula><mml:math id="M354" display="inline"><mml:mo>∘</mml:mo></mml:math></inline-formula>; solid
line) and 2010 (<inline-formula><mml:math id="M355" display="inline"><mml:mo>•</mml:mo></mml:math></inline-formula>; dashed line). The respective <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M357" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values
are shown for each linear regression line. The total plankton biomass is the
summed biomass of phytoplankton, bacterioplankton, and zooplankton. Please
refer to the “Materials and Methods” section for details on the carbon conversion
for plankton communities.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f05.png"/>

        </fig>

      <p>In addition, zooplankton might also be amongst the potential contributors to
the higher CR rate observed in 2010 than in 2009. As stated above, the
biomass of zooplankton was significantly higher in 2010 than in 2009.
However, the linear relationships between CR and zooplankton biomass over the
<inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were not statistically significant in 2009 or 2010. To further
explore how plankton communities contributed to CR, the CR rate was
regressed against the total plankton biomass (i.e., summed biomass of
phytoplankton, bacterioplankton, and zooplankton) for both periods, and the
linear relationships between CR and the total plankton biomass (mg C m<inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
over the <inline-formula><mml:math id="M360" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were significant in both 2009 (<inline-formula><mml:math id="M361" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001) and 2010 (<inline-formula><mml:math id="M362" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; Fig. 5).</p>
      <p>Similarly significant relationships between CR and total planktonic biomass
have also been observed in the summer in the ECS, and phytoplankton and
bacterioplankton might be the most important components contributing to CR
at such times (Chen et al., 2006). In this study, the autotrophic plankton
biomass (i.e., phytoplankton) accounted for 41.3 and 45.6 % of the total
planktonic biomass in 2009 and 2010, respectively. As for the heterotrophic
plankton biomass, bacterioplankton were attributed to 38.7 and 11.3 % and
zooplankton contributed 20.0 and 43.1 % of the total plankton biomass
in 2009 and 2010, respectively. This suggests that phytoplankton and
bacterioplankton might be the most important components contributing to CR in
the 2009 non-flooding period. In contrast, during the 2010 flood, the CR
rate might have been mostly driven by phytoplankton and zooplankton
metabolic activity.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Relationships between the fugacity of CO<inline-formula><mml:math id="M363" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M364" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M365" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and
plankton community respiration (CR) in the surface water in 2009 (<inline-formula><mml:math id="M366" display="inline"><mml:mo>∘</mml:mo></mml:math></inline-formula>; solid
line) and 2010 (<inline-formula><mml:math id="M367" display="inline"><mml:mo>•</mml:mo></mml:math></inline-formula>; dashed line). The respective <inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M369" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> values
are shown for each linear regression line.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f06.png"/>

        </fig>

      <p>All such conjectures are based on stocks, and biomass might not be directly
related to the concurrent CR rate. By using physiological and allometric
relationships of variant plankton communities, the plankton CR rate could be
estimated from stock values, and significant correlations have indeed been
found between measured and estimated rates (Chen et al., 2009).
Furthermore, it should be noted that microzooplankton might be another
important contributor to CR, though they were unfortunately not assessed
herein.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Implications of plankton community respiration on coastal ecosystems of
the ECS</title>
      <p>A further comparative analysis was conducted to determine whether the CR rate
affected the fugacity of CO<inline-formula><mml:math id="M370" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M371" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M372" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the seawater. In 2009, the
<inline-formula><mml:math id="M373" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M374" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the surface water was in the range of 118.7–599.8 <inline-formula><mml:math id="M375" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm
with mean values of 362.9 <inline-formula><mml:math id="M376" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 101.2 <inline-formula><mml:math id="M377" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm (Table 1). This mean value
is close to the mean (369.6 <inline-formula><mml:math id="M378" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm) observed in the ECS in August in prior
years (Chen et al., 2006). In the 2010 flood, the mean value (297.6 <inline-formula><mml:math id="M379" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm) of <inline-formula><mml:math id="M380" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M381" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the surface water was significantly lower than in
2009 and ranged from 178.7 to 454.2 <inline-formula><mml:math id="M382" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm (Table 1). It is well known
that <inline-formula><mml:math id="M383" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M384" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> is temperature dependent, and it increases as the
temperature increases (e.g., Goyet et al., 1993). The effect
of temperature on the large variation in <inline-formula><mml:math id="M385" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M386" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observed between the
2009 non-flooding period and the 2010 flood was trivial; the SST difference
of 0.7 <inline-formula><mml:math id="M387" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C between 2009 and 2010 would only equal an
<inline-formula><mml:math id="M388" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M389" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> decrease of approximately 10 <inline-formula><mml:math id="M390" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm (Table 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Differences (<inline-formula><mml:math id="M391" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> between 2009 and 2010 in <inline-formula><mml:math id="M392" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M393" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M394" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm) and plankton community respiration (CR; mg C m<inline-formula><mml:math id="M395" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the
surface water at the same station. For reference, the vertical and
horizontal dashed lines represent interannual differences of zero
(i.e., <inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/2597/2017/bg-14-2597-2017-f07.png"/>

        </fig>

      <p>The effect of freshwater input on <inline-formula><mml:math id="M398" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M399" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the surface water in the ECS
has also been suggested to be relatively minor compared to the interannual
variation in <inline-formula><mml:math id="M400" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M401" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (Chen et al., 2013). To evaluate this, conservative
mixing was applied by using TA and DIC data between freshwater and seawater
end-members. Provided that the proportional contributions from freshwater
and seawater end-members are <inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1),
respectively, the conservative mixing TA and DIC values for a given water
sample can be expressed by the following equations:

                <disp-formula specific-use="align"><mml:math id="M405" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="normal">TA</mml:mi><mml:mi mathvariant="normal">mix</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">TA</mml:mi><mml:mi mathvariant="normal">fw</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">TA</mml:mi><mml:mi mathvariant="normal">sw</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="normal">DIC</mml:mi><mml:mi mathvariant="normal">mix</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="normal">DIC</mml:mi><mml:mi mathvariant="normal">fw</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">DIC</mml:mi><mml:mi mathvariant="normal">sw</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            where the subscripts “mix”, “fw”, and “sw” represent the values of
conservative mixing, freshwater, and seawater end-members, respectively. The
TA and DIC data reported by Zhai et al. (2007) for the Changjiang River
in summer were used as the freshwater end-members (both TA<inline-formula><mml:math id="M406" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">fw</mml:mi></mml:msub></mml:math></inline-formula> and
DIC<inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">fw</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1743 <inline-formula><mml:math id="M408" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M409" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and the surface data at station K in
July 2009 and 2010 were chosen to represent the seawater end-members
(TA<inline-formula><mml:math id="M410" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">sw</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2241 <inline-formula><mml:math id="M411" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M412" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
DIC<inline-formula><mml:math id="M413" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">sw</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1909 <inline-formula><mml:math id="M414" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M415" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in 2009; TA<inline-formula><mml:math id="M416" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">sw</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2240 <inline-formula><mml:math id="M417" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M418" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
DIC<inline-formula><mml:math id="M419" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">sw</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1904 <inline-formula><mml:math id="M420" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M421" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in 2010). Subsequently, the
hypothetical <inline-formula><mml:math id="M422" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M423" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> from conservative mixing was calculated from the
TA<inline-formula><mml:math id="M424" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mix</mml:mi></mml:msub></mml:math></inline-formula> and DIC<inline-formula><mml:math id="M425" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mix</mml:mi></mml:msub></mml:math></inline-formula> data using CO2SYS version 2.1
(Pierrot et al., 2006), in which the carbonic acid dissociation
constants were adopted from Mehrbach et al. (1973) and refitted
by Dickson and Millero (1987). The uncertainty in this simulation
mainly derives from errors in the estimations of TA<inline-formula><mml:math id="M426" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mix</mml:mi></mml:msub></mml:math></inline-formula> and DIC<inline-formula><mml:math id="M427" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mix</mml:mi></mml:msub></mml:math></inline-formula>.
Assuming that the errors in the calculated TA<inline-formula><mml:math id="M428" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mix</mml:mi></mml:msub></mml:math></inline-formula> and DIC<inline-formula><mml:math id="M429" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">mix</mml:mi></mml:msub></mml:math></inline-formula> are <inline-formula><mml:math id="M430" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>5 <inline-formula><mml:math id="M431" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M432" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
this may result in an uncertainty of <inline-formula><mml:math id="M433" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>13 <inline-formula><mml:math id="M434" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm in the simulated <inline-formula><mml:math id="M435" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M436" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. The simulated results show that the effect
of mixing freshwater and seawater on <inline-formula><mml:math id="M437" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M438" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was nearly the same in both
periods. However, a large variation in <inline-formula><mml:math id="M439" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M440" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the surface water was
estimated; it varied from 375.4 to 439.8 <inline-formula><mml:math id="M441" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>atm as salinity varied from
20.38 to 33.96. This finding implies that surface water <inline-formula><mml:math id="M442" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M443" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the ECS
might increase dramatically, especially during the devastating flood of 2010
where low SSS (<inline-formula><mml:math id="M444" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 31) characterized almost 70 % of the ECS shelf (Fig. 1b). However, in the 2010 flood, surface water with low <inline-formula><mml:math id="M445" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M446" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was
observed in the ECS. Therefore, vigorous photosynthetic processes might be a
potential cause of the reduction in <inline-formula><mml:math id="M447" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M448" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the surface water during
periods of flooding. Compared to PP values observed in summer in the ECS in
previous years (Chen et al., 2009), PP was indeed high during the 2010
flood (Table 1; Chen et al., 2009). Gong et al. (2011) also estimated
that over the past decade, the carbon fixation rate during flooding was
about 3 times higher than during non-flooding periods. However, no
significant correlation was found between <inline-formula><mml:math id="M449" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M450" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and PP in the 2010 flood,
though this may simply be due to the small sample size for PP.
Nevertheless, <inline-formula><mml:math id="M451" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M452" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was significantly correlated with Chl <inline-formula><mml:math id="M453" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration
in the pooled 2010 flood dataset (<inline-formula><mml:math id="M454" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001). This significant
relationship indirectly supports the hypothesis that the reduction in
<inline-formula><mml:math id="M455" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M456" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the 2010 flood might be associated with vigorous phytoplankton
metabolic activity. Furthermore, negative linear relationships were observed
between <inline-formula><mml:math id="M457" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M458" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CR in the surface water during both the 2009
non-flooding period (<inline-formula><mml:math id="M459" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01) and the 2010 flood (<inline-formula><mml:math id="M460" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001;
Fig. 6). Significant linear relationships were also found using pooled data
from each period (all <inline-formula><mml:math id="M461" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.001). CR has been assumed to be an
integrated response of overall plankton activity. These results imply that
<inline-formula><mml:math id="M462" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M463" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the surface water (or the entire water column) is related to
plankton activities. To explore the variation in <inline-formula><mml:math id="M464" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M465" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> between the
non-flooding and flooding period, the difference in <inline-formula><mml:math id="M466" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M467" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CR at the
same station was estimated. Surprisingly, a negative linear relationship was
found between the difference in <inline-formula><mml:math id="M468" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M469" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CR for the flooding and
non-flooding periods (<inline-formula><mml:math id="M470" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.001; Fig. 7). As previously stated, compared to
the 2009 non-flooding period, the increase in the CR rate in the 2010 flood
might be associated with the increase in phytoplankton biomass (Fig. 4a).
These results indicate that the significant amount of <inline-formula><mml:math id="M471" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M472" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> absorption in
the 2010 flood was related to the strength of plankton activity,
particularly phytoplankton at stations that were not characterized by low
SSS in the 2009 non-flooding period.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p>Riverine runoff has a profound effect on organic carbon production and
consumption in coastal ecosystems across the globe, and these effects will
become even more pronounced as storm frequency and magnitude increase in the
coming decades. During the 2010 flooding of the Changjiang River, a large
quantity of freshwater was discharged into the ECS, and the CDW zone covered
almost two-thirds of the continental shelf; this represents a 6-fold larger
area than during a more typical non-flooding period (2009). Higher nitrate
concentrations, mostly in the river's fluvial discharge, were also measured
in the ECS during the flood. Although the phytoplankton biomass showed no
significant difference between 2009 and 2010, the bacterial biomass in the
surface water was significantly higher in the 2009 non-flooding period.
Despite this, CR was still higher during the 2010 flood than in the 2009
non-flooding period. The temporal difference (2010 minus 2009) in CR was
significantly related to the respective differences in Chl <inline-formula><mml:math id="M473" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration,
suggesting that the higher CR in the 2010 flood might have been attributed to a
higher biomass of phytoplankton, especially at stations located within the
CDW region (most of which were not characterized by low SSS in the 2009
non-flooding period). In addition to phytoplankton, zooplankton
(&gt; 330 <inline-formula><mml:math id="M474" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) may have also contributed significantly to the
high CR rate observed in the 2010 flood. This could be evidenced by the
fact that the zooplankton biomass in 2010 accounted for 43.1 % of the total
plankton biomass. Finally, a negative linear relationship was found between
the temporal differences (i.e., 2010 minus 2009) in CR vs. <inline-formula><mml:math id="M475" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M476" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. This
finding implies that a tremendous quantity of <inline-formula><mml:math id="M477" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M478" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was taken up during
phytoplankton photosynthesis during the flood period. Overall, these results
suggest that plankton activity increased due to the substantial input of
dissolved inorganic nutrients discharged by the river during the flood. This
effect was especially pronounced at stations not previously characterized by
low SSS, indicating that the effects of flooding on the ECS shelf ecosystem
might be scaled to the magnitude of the flood.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p>Data are available upon request to the corresponding author.</p>
  </notes><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p>This study is part of a multidisciplinary program entitled “Effects of Global Change on
Ocean Biogeochemistry and Ecosystems in the Seas Surrounding Taiwan in the
Northwest Pacific” (ECOBEST), which is supported by Taiwan's
Ministry of Science and Technology (MOST) under grants MOST
104-2611-M-003-001 and MOST 105-2119-M-003-007-MY2 to C.-C. Chen. We are
further indebted to the officers and crew of the <italic>Ocean Researcher I</italic> for their assistance
during the research cruise. The authors are also grateful to T. C. Malone at Horn Point Laboratory, UMCES and three anonymous reviewers for
providing valuable and constructive comments that improved the manuscript.
Finally, we would like to thank Anderson Mayfield for his assistance with the
English proofreading of the final versions of the manuscript. This article was
subsidized by the National Taiwan Normal University (NTNU), Taiwan, ROC.
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: C. Robinson<?xmltex \hack{\newline}?>
Reviewed by: three anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>The influence of episodic flooding on a pelagic ecosystem in the East China Sea</article-title-html>
<abstract-html><p class="p">This study was designed to determine the effects of flooding on a pelagic
ecosystem in the East China Sea (ECS) with a focus on plankton activity and
plankton community respiration (CR). In July 2010, a flood occurred in the
Changjiang River. As a comparison, a variety of abiotic and biotic
parameters were monitored during this flooding event and during
a non-flooding period (July 2009). During the flood, the Changjiang diluted
water (CDW) zone covered almost two-thirds of the ECS, which was
approximately 6 times the area covered during the non-flooding period. The
mean nitrate concentration was 3-fold higher during the 2010 flood (6.2 vs.
2.0 µM in 2009). CR was also higher in the 2010 flood: 105.6 mg C m<sup>−3</sup> d<sup>−1</sup> vs. only 73.2 mg C m<sup>−3</sup> d<sup>−1</sup> in 2009. The higher
CR in 2010 could be attributed to phytoplankton respiration, especially at
stations in the CDW zone that were not previously characterized by low sea
surface salinity in 2009. In addition, zooplankton (&gt; 330 µm) were another important component contributing to the high CR rate
observed during the 2010 flood; this was a period also associated with a significant
degree of <i>f</i>CO<sub>2</sub> drawdown. These results collectively suggest that the
2010 flood had a significant effect on the carbon balance in the ECS. This
effect might become more pronounced in the future, as extreme rainfall and
flooding events are predicted to increase in both frequency and magnitude
due to climate change.</p></abstract-html>
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