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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-14-3067-2017</article-id><title-group><article-title>Benthic foraminiferal Mn <inline-formula><mml:math id="M1" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios reflect microhabitat preferences</article-title>
      </title-group><?xmltex \runningtitle{Benthic foraminiferal Mn\,$/$\,Ca ratios}?><?xmltex \runningauthor{K.~A.~Koho et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2 aff3">
          <name><surname>Koho</surname><given-names>Karoliina A.</given-names></name>
          <email>karoliina.koho@helsinki.fi</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>de Nooijer</surname><given-names>Lennart J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff5 aff6">
          <name><surname>Fontanier</surname><given-names>Christophe</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Toyofuku</surname><given-names>Takashi</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8095-6077</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Oguri</surname><given-names>Kazumasa</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7 aff8">
          <name><surname>Kitazato</surname><given-names>Hiroshi</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4990-3908</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Reichart</surname><given-names>Gert-Jan</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Ocean Systems, NIOZ-Royal Netherlands Institute for Sea
Research and Utrecht University, <?xmltex \hack{\break}?>Den Burg, the Netherlands</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Environmental Sciences, P.O. Box 65 (Viikinkaari 1),
00014 University of Helsinki,  Helsinki, Finland</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Earth Sciences – Geochemistry, Faculty of Geosciences,
Utrecht University, P.O. Box 80.021, <?xmltex \hack{\break}?>3508 TA Utrecht, the Netherlands</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Ifremer, Géosciences marines, Z.I. Pointe du Diable CS10070,
29280 Plouzané, France</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Université of Bordeaux, Environnements et Paléo-environnements
Océaniques et Continentaux, UMR 5805, <?xmltex \hack{\break}?>33600 Talence, France</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Laboratoire de planétologie et de géodynamique –  bio-indicateurs actuels et fossiles, Université of Angers, 49035 Angers, France</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15
Natsushima-cho, Yokosuka, 237-0061, Japan</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Tokyo University of Marine Science and Technology, 4-5-7 Konan,
Minato-ku 108-8477, Tokyo, Japan</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Karoliina A. Koho (karoliina.koho@helsinki.fi)</corresp></author-notes><pub-date><day>22</day><month>June</month><year>2017</year></pub-date>
      
      <volume>14</volume>
      <issue>12</issue>
      <fpage>3067</fpage><lpage>3082</lpage>
      <history>
        <date date-type="received"><day>16</day><month>December</month><year>2016</year></date>
           <date date-type="rev-request"><day>12</day><month>January</month><year>2017</year></date>
           <date date-type="rev-recd"><day>27</day><month>April</month><year>2017</year></date>
           <date date-type="accepted"><day>19</day><month>May</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://bg.copernicus.org/articles/.html">This article is available from https://bg.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>The Mn <inline-formula><mml:math id="M2" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca of calcium carbonate tests of living (rose-Bengal-stained) benthic foraminifera (<italic>Elphidium batialis</italic>,
<italic>Uvigerina</italic> spp., <italic>Bolivina spissa</italic>, <italic>Nonionellina labradorica</italic> and <italic>Chilostomellina fimbriata</italic>) were determined in
relation to pore water manganese (Mn) concentrations for the first time along
a bottom water oxygen gradient across the continental slope along the NE
Japan margin (western Pacific). The local bottom water oxygen (BWO) gradient
differs from previous field study sites focusing on foraminiferal Mn <inline-formula><mml:math id="M3" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca
and redox chemistry, therefore allowing further resolution of previously observed
trends. The Mn <inline-formula><mml:math id="M4" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were analysed using laser ablation inductively coupled plasma-mass spectrometer
(ICP-MS), allowing single-chamber determination of Mn <inline-formula><mml:math id="M5" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca. The incorporation of Mn
into the carbonate tests reflects environmental conditions and is not
influenced by ontogeny. The inter-species variability in Mn <inline-formula><mml:math id="M6" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca
reflected foraminiferal in-sediment habitat preferences and associated pore
water chemistry but also showed large interspecific differences in Mn
partitioning. At each station, Mn <inline-formula><mml:math id="M7" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were always lower in the
shallow infaunal <italic>E. batialis</italic>, occupying relatively oxygenated
sediments, compared to intermediate infaunal species, <italic>Uvigerina</italic> spp.
and <italic>B. spissa</italic>, which were typically found at greater depth, under more
reducing conditions. The highest Mn <inline-formula><mml:math id="M8" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca was always recorded by the
deep infaunal species <italic>N. labradorica</italic> and <italic>C. fimbriata</italic>. Our
results suggest that although partitioning differs, Mn <inline-formula><mml:math id="M9" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in the
intermediate infaunal taxa are promising tools for palaeoceanographic
reconstructions as their microhabitat exposes them to higher variability in
pore water Mn, thereby making them relatively sensitive recorders of redox
conditions and/or bottom water oxygenation.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Benthic foraminifera, single-celled, testate eukaryotes, are common proxies
used in palaeoceanographic studies. Many species make a shell, or a test, of
calcium carbonate that has a high preservation potential. The chemistry of
the carbonate test (i.e. its isotopic and elemental composition) reflects
various physical and chemical conditions of the calcification environment,
thereby allowing the reconstruction of past environmental and climatic
conditions. One of the most commonly applied geochemical foraminifera-based
proxies is the Mg <inline-formula><mml:math id="M10" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratio of the test carbonate, which has been shown to
primarily reflect seawater temperatures (e.g. Nürnberg et al., 1996;
Elderfield et al., 2006). Other elemental ratios, such as B <inline-formula><mml:math id="M11" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca and U <inline-formula><mml:math id="M12" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca, have
been shown to reflect carbonate chemistry (e.g. Yu and Elderfield, 2007; Yu
et al., 2010; Keul et al., 2013). Previous studies have also highlighted the
potential of reconstructing bottom water oxygenation (BWO) and/or sediment
redox chemistry, using Mn <inline-formula><mml:math id="M13" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in benthic foraminifera (Reichart et al.,
2003; Glock et al., 2012; Groeneveld and Filipsson, 2013; Koho et al., 2015;
McKay et al., 2015). The relationship between Mn incorporation into
foraminiferal test carbonate and oxygenation is based on the combination of
Mn availability and redox chemistry, which is typically linked to BWO. Under
oxic conditions Mn is present in the form of solid (hydr)oxides, i.e MnO<inline-formula><mml:math id="M14" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
or MnOOH, on coatings on sediment particles (e.g. Finney et al., 1988).
Therefore, foraminifera calcifying under oxic condition are likely to
incorporate no, or very low amounts of Mn (Koho et al., 2015). In contrast,
in the absence of oxygen the solid Mn (hydr)oxides are reduced to aqueous
Mn<inline-formula><mml:math id="M15" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> (Froelich et al., 1979), subsequently leading to the build-up of
bioavailable Mn<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> in pore water. Foraminifera calcifying under such
conditions are expected to show elevated Mn <inline-formula><mml:math id="M17" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios, the concentration
depending on the actual in situ aqueous Mn concentrations (Munsel et al.,
2010). Exceptions are environments such as oxygen minimum zones, where bottom
waters have been oxygen-deprived for extended periods. In such cases,
aqueous Mn<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> has diffused upwards and was released into the overlying
water, leaving pore waters (and sediments) depleted in Mn<inline-formula><mml:math id="M19" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> (e.g. Van
der Weijden, 1998; Law et al., 2009). In such settings, foraminiferal test
calcite is expected to contain no Mn (Koho et al., 2015). In sediments, where
bottom waters and surficial sediments are oxygenated and deeper sediments
are anoxic, and hence Mn is retained in sediments, the incorporation of Mn in
different species of foraminifera is expected to depend on the species-specific
in-sediment living depth.</p>
      <p>Benthic foraminifera are traditionally divided into four categories based on
their microhabitat: epifauna and <?xmltex \hack{\mbox\bgroup}?>shallow<?xmltex \hack{\egroup}?>, <?xmltex \hack{\mbox\bgroup}?>intermediate<?xmltex \hack{\egroup}?> and deep infauna
(Corliss, 1985; Jorissen et al., 1995). This depth distribution is tightly
controlled by species-specific responses to environmental redox chemistry
and food supply (e.g. Jorissen et al., 1995; Koho et al., 2008; Koho and
Piña-Ochoa 2012). Epi- and infauna, living above the sediment–water
interface and in surficial sediments, respectively, are typically found under
oxic conditions, with increasing living depth corresponding to increasing
oxygen depletion and redox stress (e.g. Koho et al., 2008; Koho and
Piña-Ochoa, 2012). Therefore, the test chemistry of species with different
microhabitat preferences, i.e. living and/or calcifying at different
sediment depths with varying Mn redox chemistry, is expected to display
different Mn <inline-formula><mml:math id="M20" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca. This was confirmed in a study of Koho et al. (2015),
showing that shallow infaunal species consistently had lower Mn <inline-formula><mml:math id="M21" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios
than species living at the same location but found deeper in the sediment.
This resulted in a conceptual model linking bottom water oxygenation,
organic matter supply and microhabitat effects (Koho et al., 2015). However,
this model is currently based on a limited set of oceanic conditions and
theoretical considerations.</p>
      <p>Here we present Mn <inline-formula><mml:math id="M22" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in benthic foraminifera with various
microhabitat preferences collected from a depth transect across a
dysoxic-to-oxic zone (BWO always <inline-formula><mml:math id="M23" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 33 <inline-formula><mml:math id="M24" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in northern Japan.
The incorporation of Mn into foraminiferal test carbonate is evaluated in
the context of microhabitat distributions and foraminiferal ecology, which
have been described previously (Fontanier et al., 2014) for this area, and compared
to measured bottom and pore water chemistry.</p>
</sec>
<sec id="Ch1.S2">
  <title>Materials and methods</title>
<sec id="Ch1.S2.SS1">
  <title>Study area</title>
      <p>The sampled transect is located at the continental slope of NE Japan, off
Hachinohe (Fig. 1). Surface waters in the area are dominated by three major
currents: the Tsugaru Warm Current, the Kuroshio Current and the Oyashio Current.
The convergence of these current systems results in a number of hydrological
fronts sustaining high productivity in this area
(Saino et al., 1998; Itou et al., 2000). Below 200 m water depth, the North Pacific Intermediate Water (NIPW) mixes gradually with saline Deep Pacific Water (DPW), entering this
area between a water depth of 800 and 3000 m. The development of a dysoxic water
mass approximately between water depths of 700 and 1400 m is related to
both high surface water productivity, resulting in enhanced remineralisation
of organic matter and associated oxygen consumption, and poor intermediate
water ventilation at depth (Nagata et al., 1992).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p><bold>(a)</bold> Regional map of the study area. <bold>(b)</bold> Bathymetric map of the study
region, showing the position of the Tsugaru Warm Current (Oguma et al., 2002)
and multicore sampling sites. <bold>(c)</bold> Schematised study transect with water
column profiles of dissolved oxygen. The dysoxic water column (O<inline-formula><mml:math id="M26" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> &lt; 45 <inline-formula><mml:math id="M27" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>),
located approximately between 750 and 1400 m, is indicated
by a grey-square pattern. Black triangles indicate stations where pore water
parameters were measured. White triangles are stations where pore water data were not obtained.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f01.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS2">
  <title>Sampling</title>
      <p>Sediment samples were collected in August 2011 onboard of R/V <italic>Tansei Maru</italic> (Atmosphere
and Ocean Research Institute, University of Tokyo/JAMSTEC) with a
Barnett-type multicorer equipped with eight Plexiglas tubes with an
internal diameter of 82 mm (Barnett et al., 1984). This type of coring device
allows the recovery of undisturbed sediments with an intact sediment–water
interface. Sediment for faunal analyses was collected over a transect spanning the oxygen minimum zone (OMZ), whereas pore water chemistry was determined from material
collected at three selected sites within this transect (Fig. 1, Table 1).
Separate cores were collected for pore water and foraminiferal analyses and oxygen profiling; all of these cores were derived from the same multicore
cast. In addition to coring, a conductivity–temperature–depth (CTD) cast
(Sea-Bird Electronics, S/N 860; SBE9plus) equipped with an SBE3 thermometer
(S/N 4378), SBE4 conductivity sensor (S/N 3307) and SBE43 oxygen sensor (S/N 0781)
was taken at every site to record water column properties. The
accuracy specifications of the oxygen sensor are typically within 2 % of true value.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Station details including latitude, longitude, water depth
and BWO content. In addition sites where pore water
and foraminifera were collected are indicated.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="left"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Station</oasis:entry>  
         <oasis:entry colname="col2">Latitude</oasis:entry>  
         <oasis:entry colname="col3">Longitude</oasis:entry>  
         <oasis:entry colname="col4">Depth</oasis:entry>  
         <oasis:entry colname="col5">BWO</oasis:entry>  
         <oasis:entry colname="col6">Foraminifera</oasis:entry>  
         <oasis:entry colname="col7">Pore</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(N)</oasis:entry>  
         <oasis:entry colname="col3">(E)</oasis:entry>  
         <oasis:entry colname="col4">(m)</oasis:entry>  
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M29" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7">water</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">6</oasis:entry>  
         <oasis:entry colname="col2">40<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>58.891<inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">141<inline-formula><mml:math id="M33" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>47.572<inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">496</oasis:entry>  
         <oasis:entry colname="col5">112</oasis:entry>  
         <oasis:entry colname="col6">Yes</oasis:entry>  
         <oasis:entry colname="col7">Yes</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">7</oasis:entry>  
         <oasis:entry colname="col2">41<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>10.647<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">141<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>47.348<inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">760</oasis:entry>  
         <oasis:entry colname="col5">42</oasis:entry>  
         <oasis:entry colname="col6">Yes</oasis:entry>  
         <oasis:entry colname="col7">No</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">8</oasis:entry>  
         <oasis:entry colname="col2">41<inline-formula><mml:math id="M39" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>15.003<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">142<inline-formula><mml:math id="M41" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>00.028<inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">1033</oasis:entry>  
         <oasis:entry colname="col5">36</oasis:entry>  
         <oasis:entry colname="col6">Yes</oasis:entry>  
         <oasis:entry colname="col7">Yes</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">9</oasis:entry>  
         <oasis:entry colname="col2">41<inline-formula><mml:math id="M43" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>14.982<inline-formula><mml:math id="M44" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">142<inline-formula><mml:math id="M45" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>16.969<inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">1249</oasis:entry>  
         <oasis:entry colname="col5">33</oasis:entry>  
         <oasis:entry colname="col6">Yes</oasis:entry>  
         <oasis:entry colname="col7">No</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">10</oasis:entry>  
         <oasis:entry colname="col2">41<inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>14.918<inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">142<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>59.989<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">1963</oasis:entry>  
         <oasis:entry colname="col5">70</oasis:entry>  
         <oasis:entry colname="col6">Yes</oasis:entry>  
         <oasis:entry colname="col7">Yes</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS3">
  <title>Pore water analyses</title>
      <p>Immediately upon arrival on board, bottom water samples were taken from
overlying multicore water after which the core was transferred via a table
with a closely fitted hole into a N<inline-formula><mml:math id="M51" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-purged glove bag for sequential
slicing (atmospheric O<inline-formula><mml:math id="M52" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> within the glove bag never exceeding 1 %).
The core was subsequently sliced down to 20 cm depth: the first 2 cm had intervals with a resolution of 0.5 cm; between 2 and 10 cm, samples were taken at 1 cm intervals; and from 10 cm downwards, they had 2 cm intervals. Sediment samples were
centrifuged in 50 mL tubes for 20 min at 2800 rpm. The supernatant was
removed and filtered over 0.45 <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m TeflonTM filters under N<inline-formula><mml:math id="M54" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
atmosphere and divided into subsamples for various analyses. The nutrient
samples were stored at <inline-formula><mml:math id="M55" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M56" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analyses, and back in the
laboratory nitrate concentrations were measured with a Bran-Luebbe AA3
autoanalyser, and ammonium was measured spectrophotometrically using phenol-hypochlorite
(Helder and De Vries, 1979). Samples for pore water elemental analyses were
acidified with Suprapur HCl 37 % (10 <inline-formula><mml:math id="M57" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L per millilitre of sample) and
subsequently stored at 4 <inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analysis at Utrecht University.
Seawater elemental concentrations of <inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">55</mml:mn></mml:msup></mml:math></inline-formula>Mn were measured with an
inductively coupled plasma mass spectrometer (ICP-MS, ThermoFisher
Scientific Element2-XR). Replicate analyses and an in-house standard
indicated that the relative error for analyses of pore water element
concentrations was generally less than 3 %.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Oxygen micro-profiles</title>
      <p>The oxygen micro-profiles were recorded in a custom-built incubation chamber,
allowing the regulation of temperature and oxygen content of overlaying water,
and have been previously published in Fontanier et al. (2014). A brief summary is as follows:
upon retrieval on board, one core (from stations 6, 8 and 10 only)
was immediately subsampled with a piston device made of a 50 mL syringe and
subsequently placed into the incubation chamber filled with bottom water
collected with Niskin bottles. Every core was left to stabilise for a minimum
of 9 h while the temperature and oxygen concentrations were kept at
in situ conditions. Any fluctuations in the oxygen concentrations were less than
0.5 <inline-formula><mml:math id="M60" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Afterwards, the oxygen micro-profiles were measured with an OX-50
Unisense microsensor and a motor controller (step size of 100 <inline-formula><mml:math id="M62" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m).</p>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Foraminifera: sampling and elemental composition</title>
      <p>The details of benthic foraminiferal processing and analyses are described
in Fontanier et al. (2014). In summary, cores for faunal analyses were
sliced at 0.5 cm intervals down to 4 cm, at 1 cm interval from 4 to 6 cm depth and at 2 cm
intervals down to 10 cm depth in sediment. Samples were preserved
and stained with rose bengal dissolved in 95 % ethanol (1 g L<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Stained
(living) foraminifera in the &gt; 150 <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m fraction were wet
picked, identified and stored on micropalaeontological slides. From the
census data of Fontanier et al. (2014), the average living depth (ALD) of
selected species was calculated based on the equation in Jorissen et al. (1995).</p>
      <p>A few species occurring in high relative abundance and representing various
microhabitats were selected for Mn <inline-formula><mml:math id="M65" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca measurements (Table 2). Most of the specimens
came from surficial sediments (top 0.5 cm), but for some
taxa, specimens from deeper sediment intervals were measured additionally
(Table 2). Prior to analyses, all foraminifera were thoroughly cleaned to
remove sediment contamination (Barker et al., 2003); this was done by placing the
foraminifera in Eppendorf tubes and rinsing them three times in ultrapure
water (100 <inline-formula><mml:math id="M66" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L). This was followed by three rinses in methanol (100 <inline-formula><mml:math id="M67" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L) and finally three more rinses in ultrapure water (100 <inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L). Between
the methanol rinses, foraminifera were placed in an ultrasonic bath for
approximately 5 s. After these steps, specimens were dried and
stored until geochemical analyses.</p>
      <p>Trace element content was measured generally on single foraminiferal
chambers (Table 2) with two different laser ablation ICP-MS setups, which
have been shown to produce comparable foraminiferal elemental <inline-formula><mml:math id="M69" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca results
(de Nooijer et al., 2014). In all cases, shells were ablated from the outside
towards the inside (Fig. 2) in He environment, and element ratios were based
on averaging measured concentrations during each ablation after selecting
the non-contaminated part of the ablation profile, which was recognised by
elevated counts of Al, Mg and Mn at the beginning, and occasionally the end, of the
ablation profile (Fig. 2). Although all tests were carefully cleaned, test
surfaces of foraminifera can still be contaminated with adhered particles
containing elevated concentrations of Mg and Mn in combination with elevated
Al. These parts of the ablation profiles were excluded from further
consideration (Fig. 2). Short ablation profiles (generally less than 5 s) were excluded from the data, and only longer ablation profiles,
typically ranging between 10 and 30 s in length, were used.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Laser ablation profile for Al <inline-formula><mml:math id="M70" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca, Mg <inline-formula><mml:math id="M71" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca and Mn <inline-formula><mml:math id="M72" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca measured
in <bold>(a)</bold> <italic>Elphidium batialis</italic> (station 8, 0–0.5 cm depth) and <bold>(b)</bold> <italic>Uvigerina akitaensis</italic>
(station 7, 0–0.5 cm depth) benthic
foraminifera. The selected signal for the elemental composition is indicated
by the grey shading. Parts of the profile with elevated surface ratios,
especially Al <inline-formula><mml:math id="M73" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca, are removed. In addition, the elevated concentrations,
following the ablation through the foraminiferal test, are not included in
the averaged elemental ratios. Note the different scale bars for elemental
ratios.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f02.png"/>

        </fig>

      <p>Measurements carried out at Utrecht University were done with a
deep-ultraviolet wavelength laser (193 nm) using a Lambda Physik excimer
system with GeoLas 200Q optics (Reichart et al., 2003). Every ablation
lasted approximately 130 s, of which the first 45 s consisted of background. Ablation craters were circular with a diameter of
80 <inline-formula><mml:math id="M74" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m; the pulse repetition rate was 5 Hz and the energy density at the sample surface
approximately 1 J cm<inline-formula><mml:math id="M75" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Element-to-calcium ratios were quantified using
counts for <inline-formula><mml:math id="M76" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">27</mml:mn></mml:msup></mml:math></inline-formula>Al, <inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">43</mml:mn></mml:msup></mml:math></inline-formula>Ca, <inline-formula><mml:math id="M78" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">44</mml:mn></mml:msup></mml:math></inline-formula>Ca, <inline-formula><mml:math id="M79" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">24</mml:mn></mml:msup></mml:math></inline-formula>Mg, <inline-formula><mml:math id="M80" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">26</mml:mn></mml:msup></mml:math></inline-formula>Mg and
<inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">55</mml:mn></mml:msup></mml:math></inline-formula>Mn and their relative natural abundances on a sector field ICP-MS
(Element2, Thermo Scientific). The cycle length through all masses was 0.64 s. Raw counts were converted to element concentrations, and integration
windows were set using the computer program Glitter (developed by the ARC
National Key Centre for Geochemical Evolution and Metallogeny of Continents
(GEMOC) and CSIRO Exploration and Mining). Calibration was performed against
the international NIST SRM 610 glass standard (using concentrations from Jochum
et al., 2011) at a higher energy density (5 J cm<inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which was ablated
twice every 12 samples. The calibration of element <inline-formula><mml:math id="M83" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> calcium ratios in calcium
carbonate samples using a NIST glass standard has been demonstrated to be
accurate for many elements when using a 193 nm laser (Hathorne et al.,
2008). Switching energy density between carbonate sample and glass standard
has been shown not to affect the concentration of the relevant elements
(Dueñas-Bohórquez et al., 2010).</p>
      <p>Some samples were measured at the Royal NIOZ (Netherlands Institute for Sea Research) using a comparable, but slightly
different setup. This configuration consists of an NWR193UC (New Wave
Research) laser, containing a dual-volume ablation cell and an ArF excimer
laser (Existar) with deep UV 193 nm wavelength and less than 4 ns pulse
duration, connected to a quadrupole ICP-MS (iCAP-Q, Thermo Scientific). The
energy density of the ablation was also set to 1 J cm<inline-formula><mml:math id="M84" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, the
ablation spot was 60 <inline-formula><mml:math id="M85" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in diameter and the repetition rate was
6 Hz for the foraminiferal samples. Calibration to the NIST610 standard was
identical to that performed at Utrecht University. Helium was used as a
carrier gas with a flow rate of 0.8 L min<inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for cell gas and
0.3 L min<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for cup gas. From the laser chamber to the ICP-MS, the He
flow was mixed with <inline-formula><mml:math id="M88" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.4 L min<inline-formula><mml:math id="M89" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> nebuliser Ar and
0.0025 mL min<inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> N<inline-formula><mml:math id="M91" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. Before measuring the samples, the nebuliser
gas, extraction lense, CCT (collision cell technology) focus lense and torch position were
automatically tuned for the highest sensitivity to <inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">238</mml:mn></mml:msup></mml:math></inline-formula>U, <inline-formula><mml:math id="M93" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">139</mml:mn></mml:msup></mml:math></inline-formula>La,
<inline-formula><mml:math id="M94" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">59</mml:mn></mml:msup></mml:math></inline-formula>Co and low ThO <inline-formula><mml:math id="M95" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Th ratios (less than 1 %) by laser ablating
NIST SRM 610 glass. Masses monitored included <inline-formula><mml:math id="M96" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">27</mml:mn></mml:msup></mml:math></inline-formula>Al, <inline-formula><mml:math id="M97" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">43</mml:mn></mml:msup></mml:math></inline-formula>Ca,
<inline-formula><mml:math id="M98" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">44</mml:mn></mml:msup></mml:math></inline-formula>Ca, <inline-formula><mml:math id="M99" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">24</mml:mn></mml:msup></mml:math></inline-formula>Mg, <inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">26</mml:mn></mml:msup></mml:math></inline-formula>Mg and <inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">55</mml:mn></mml:msup></mml:math></inline-formula>Mn. Every ablation lasted
approximately 100 s, of which the first 20 s consisted of a background. The
cycle length through all masses was 0,12 s. Intensity data were integrated,
background subtracted, standardised internally to <inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">43</mml:mn></mml:msup></mml:math></inline-formula>Ca and calibrated
against the NIST SRM 610 signal using Thermo Qtergra software and reference
values from Jochum et al. (2011), assuming 40 % Ca weight for the
foraminiferal samples. JCp-1, MACS-3 and an in-house (foraminiferal) calcite
standard (NFHS – NIOZ foraminifera house standard) were used for quality control and
measured every 10 foraminiferal samples. The relative standard deviation in
element <inline-formula><mml:math id="M103" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca based
on multiple measurements on the NFHS is comparable to that of other standards
(Mezger et al., 2016). Internal reproducibility of the analyses was all
better than 10 %, based on the three different carbonate standards.</p>
      <p>The resulting Mn and Ca concentrations in foraminiferal test carbonate were
used to calculate partition coefficients (<inline-formula><mml:math id="M104" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>) according to the following
equation:
            <disp-formula id="Ch1.Ex1"><mml:math id="M105" display="block"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Mn</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Ca</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">calcite</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Mn</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Ca</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mi mathvariant="normal">pore</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi mathvariant="normal">water</mml:mi></mml:mrow></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Bottom water chemistry and pore water profiles</title>
      <p>The BWO content varied from 112 <inline-formula><mml:math id="M106" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M107" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at station 6 to
33 <inline-formula><mml:math id="M108" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M109" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> measured at station 9 (Table 1). Stations 7 and 8
were also bathed in dysoxic (&lt; 45 <inline-formula><mml:math id="M110" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) bottom water. These
low BWO contents were reflected in the shallow oxygen penetration depths
(Fig. 3), measuring less than 5 mm at all sites and reaching a
minimum of less than 2 mm at station 6.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Pore water profiles of dissolved oxygen, nitrate, ammonium and
manganese at stations 6 <bold>(a)</bold>, 8 <bold>(b)</bold> and 10 <bold>(c)</bold>. <bold>(d)</bold> Pore water manganese
inventory in the top 10 cm of sediment and bottom water oxygen content
(white symbols).</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f03.png"/>

        </fig>

      <p>Pore water chemistry, including dissolved oxygen, nitrate, ammonium and
manganese, was measured at sites 6, 8 and 10 (Fig. 3). Nitrate
concentrations always peaked in the bottom waters (approximately
40 <inline-formula><mml:math id="M112" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M113" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), implying an influx of nitrate from the overlying water into the
sediments. In all cores, nitrate was rapidly depleted within surficial
sediments. Only at station 10, a small subsurface peak was noted in nitrate
between 2 and 3 cm depth. The decline in pore water oxygen and
nitrate was accompanied with an increase in ammonium, typically reaching
close to 100 <inline-formula><mml:math id="M114" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M115" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at 20 cm depth. However, in the top
5 cm, where most of the foraminifera were located
(Fontanier et al., 2014), ammonium concentrations were always below 30 <inline-formula><mml:math id="M116" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M117" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Total number of laser ablation measurements
and number of foraminifera ablated. In addition, the depth intervals
of specimens per station are indicated.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Species</oasis:entry>  
         <oasis:entry colname="col2">Measurements</oasis:entry>  
         <oasis:entry colname="col3">Specimens</oasis:entry>  
         <oasis:entry rowsep="1" namest="col4" nameend="col8" align="center">Depth intervals of foraminifera (cm) </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">ST 6</oasis:entry>  
         <oasis:entry colname="col5">ST7</oasis:entry>  
         <oasis:entry colname="col6">ST8</oasis:entry>  
         <oasis:entry colname="col7">ST9</oasis:entry>  
         <oasis:entry colname="col8">ST10</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>E. batialis</italic></oasis:entry>  
         <oasis:entry colname="col2">65</oasis:entry>  
         <oasis:entry colname="col3">44</oasis:entry>  
         <oasis:entry colname="col4">0–0.5</oasis:entry>  
         <oasis:entry colname="col5">0–0.5</oasis:entry>  
         <oasis:entry colname="col6">0–0.5</oasis:entry>  
         <oasis:entry colname="col7">0–0.5</oasis:entry>  
         <oasis:entry colname="col8">0–0.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>Uvigerina</italic> spp.</oasis:entry>  
         <oasis:entry colname="col2">100</oasis:entry>  
         <oasis:entry colname="col3">66</oasis:entry>  
         <oasis:entry colname="col4">0–0.5</oasis:entry>  
         <oasis:entry colname="col5">0–0.5</oasis:entry>  
         <oasis:entry colname="col6">0–0.5</oasis:entry>  
         <oasis:entry colname="col7">0–0.5</oasis:entry>  
         <oasis:entry colname="col8">0–0.5; 0.5–1; 1–1.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>B. spissa</italic></oasis:entry>  
         <oasis:entry colname="col2">79</oasis:entry>  
         <oasis:entry colname="col3">23</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">0–0.5</oasis:entry>  
         <oasis:entry colname="col6">0–0.5</oasis:entry>  
         <oasis:entry colname="col7">0–0.5; 0.5–1</oasis:entry>  
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>N. labradorica</italic></oasis:entry>  
         <oasis:entry colname="col2">18</oasis:entry>  
         <oasis:entry colname="col3">18</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">0–0.5</oasis:entry>  
         <oasis:entry colname="col6">0–0.5; 2–2.5; 4–5</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">0-0.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>C. fimbriata</italic></oasis:entry>  
         <oasis:entry colname="col2">15</oasis:entry>  
         <oasis:entry colname="col3">15</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">0-0.5</oasis:entry>  
         <oasis:entry colname="col6">4–5</oasis:entry>  
         <oasis:entry colname="col7">1–1.5; 3–3.5</oasis:entry>  
         <oasis:entry colname="col8"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>A subsurface peak was observed in pore water Mn concentrations at all sites,
suggesting that manganese reduction was taking place within the sediments.
However, at station 6 the Mn concentrations were generally low and did not
exceed 1.4 <inline-formula><mml:math id="M118" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M119" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (0.5–1 cm depth interval). At station 8 the
subsurface peak was somewhat more developed but the concentrations still
remained low (<inline-formula><mml:math id="M120" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math id="M121" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M122" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>): between 0.5 and 1.5 cm depth
in sediment. At station 10, the subsurface manganese front was much
broader, extending from 2 to 12 cm depth with a maximum concentration of
5.0 <inline-formula><mml:math id="M123" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the 5–6 cm depth interval.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <?xmltex \opttitle{Mn\,$/$\,Ca ratios in single foraminiferal chambers}?><title>Mn <inline-formula><mml:math id="M125" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in single foraminiferal chambers</title>
      <p>Mn <inline-formula><mml:math id="M126" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were measured in multiple foraminiferal chambers, ranging from
chambers F-1 and F-2 (penultimate or pre-penultimate) to F-12 and to the umbo
in <italic>Elphidium batialis</italic>. Selected data of single chamber measurements are presented in Fig. 4,
showing <italic>E. batialis</italic>, <italic>Uvigerina akitaensis</italic> and <italic>Bolivina spissa</italic>
from stations with the highest numbers of specimens measured across
a range of chambers. In addition, single specimen measurements, in which
four or more chambers were measured, are shown in Supplement Fig. S1. For none of
the species, or for individual profiles shown in Fig. S1, was there any
trend in Mn <inline-formula><mml:math id="M127" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios with chamber number (Pearson correlation where
two-tailed significance was always &gt; 0.05). The statistical data
analyses were carried out on all data (see all Mn <inline-formula><mml:math id="M128" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca data in Table S1 in the Supplement),
confirming the absence of a relation between shell size and Mn <inline-formula><mml:math id="M129" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca. An
example of <italic>Nonionellina labradorica</italic> is not shown in Fig. 4 as a relatively low number of total
measurements (<inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 18) was performed on this species, and hence statistical
tests are not robust. Further, due to test configuration of <italic>Chilostomellina fimbriata</italic>, only the final
chamber (F-0) was analysed, and hence a potential size-related effect could
not be determined.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Box plots showing chamber-to-chamber variability in Mn <inline-formula><mml:math id="M131" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca. Error
bars display the full range of data variation (data within 1.5 interquartile
(IQ) range ). Data outliers are represented with a white circle (between 1.5
and 3 IQ range), and extreme data outliers are indicated by an asterisk (above 3 IQ range).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f04.png"/>

        </fig>

      <p>Since no trend was present between Mn <inline-formula><mml:math id="M132" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca and chamber number, all data were
combined for interpretation in the following sections.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <?xmltex \opttitle{Mn\,$/$\,Ca ratios in test calcite and foraminiferal microhabitat
distribution}?><title>Mn <inline-formula><mml:math id="M133" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in test calcite and foraminiferal microhabitat
distribution</title>
      <p>Foraminiferal Mn <inline-formula><mml:math id="M134" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were generally low in <italic>E. batialis</italic>, ranging from 0.9 to 33.8 <inline-formula><mml:math id="M135" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol mol<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(Fig. 5). The highest concentrations were measured in <italic>N. labradorica</italic>
(ranging from 23.4 to 277.0 <inline-formula><mml:math id="M137" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol mol<inline-formula><mml:math id="M138" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). <italic>E. batialis</italic> also showed least variability
in measurements per sample with the average standard error of all measurements
per station ranging between 0.2 and 7.4 <inline-formula><mml:math id="M139" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol mol<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>
      <p>Most of the measurements were performed on specimens collected from surface
sediments; however, for <italic>Uvigerina</italic> spp., <italic>B. spissa</italic>,
<italic>N. labradorica</italic> and <italic>C. fimbriata</italic>, specimens were also measured from
deeper sediment intervals (Fig. 5). However, no statistical correlations
were observed between the depths where foraminifera were found and their
Mn <inline-formula><mml:math id="M141" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios (Table 3). However, statistical tests with <italic>N. labradorica</italic>
and <italic>C. fimbriata</italic> are of limited value due to the low total number of specimens measured at these sites.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p>Pearson correlation coefficients and significance values
for Mn <inline-formula><mml:math id="M142" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of  <italic>Uvigerina</italic> spp. (St 9),
<italic>B. spissa</italic> (St 9). <italic>N. labradorica</italic> (St 8) and
<italic>C. fimbriata</italic> (St 9) versus sediment depth from where foraminifera were collected.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Species</oasis:entry>  
         <oasis:entry colname="col2">Pearson</oasis:entry>  
         <oasis:entry colname="col3">Significance</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M143" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">correlation</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>Uvigerina</italic> spp.</oasis:entry>  
         <oasis:entry colname="col2">0.267</oasis:entry>  
         <oasis:entry colname="col3">0.91</oasis:entry>  
         <oasis:entry colname="col4">41</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>B. spissa</italic></oasis:entry>  
         <oasis:entry colname="col2">0.017</oasis:entry>  
         <oasis:entry colname="col3">0.937</oasis:entry>  
         <oasis:entry colname="col4">23</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>N. labradorica</italic></oasis:entry>  
         <oasis:entry colname="col2">0.512</oasis:entry>  
         <oasis:entry colname="col3">0.159</oasis:entry>  
         <oasis:entry colname="col4">9</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><italic>C. fimbriata</italic></oasis:entry>  
         <oasis:entry colname="col2">0.404</oasis:entry>  
         <oasis:entry colname="col3">0.247</oasis:entry>  
         <oasis:entry colname="col4">10</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><caption><p>Individual laser ablation measurements of Mn <inline-formula><mml:math id="M144" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca in foraminifera
versus sediment depth where the specimens were collected.</p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Mn <inline-formula><mml:math id="M145" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in foraminifera as a function of the average living
depth of each species. The average of all measurements is indicated by a
solid symbol and the individual measurements by open symbols. In addition, the pore water profile of Mn is shown at all sites where it was measured.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f06.png"/>

        </fig>

      <p>The average living depth of all species analysed was calculated after Jorissen
et al. (1995). The shallowest living depth was noted for <italic>E. batialis</italic> and was generally
encountered in the upper 1 cm of the cores (Fig. 6). At site 10, a few
isolated specimens were found deeper in sediment, resulting in an overall
average living depth of 1.2 cm. <italic>Uvigerina</italic> spp. (<italic>U. cf. graciliformis</italic> – station 6; <italic>U. akitaensis</italic> – stations 7, 8 and 9)
was found at slightly greater depth, with an ALD ranging from 1.0 cm at station 9 to
2.1 cm at station 7. <italic>B. spissa</italic> was consistently found living at greater depth than
<italic>Uvigerina</italic> spp. with an average living depth close to 2 cm. Of the two deep-living taxa, the average living depth of <italic>C. fimbriata</italic> was around 5 cm
depth, whereas <italic>N. labradorica</italic> was centred at 4 cm depth in sediment, except at
station 7 where the ALDs of these species were 2.9 and 2.3 cm,
respectively. Overall, a systematic distribution of foraminiferal
microhabitats was observed with the shallow infaunal microhabitat represented by
<italic>E. batialis</italic>. An intermediate infaunal habitat was occupied by <italic>Uvigerina</italic> spp.
and <italic>B. spissa</italic>, and the deep infaunal habitat was inhabited by <italic>N. labradorica</italic> and <italic>C. fimbriata</italic>.</p>
      <p>Systematic changes were noted in Mn <inline-formula><mml:math id="M146" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios with respect to foraminiferal
microhabitat (Fig. 6). Lowest Mn <inline-formula><mml:math id="M147" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca values were found in the shallow
infaunal <italic>E. batialis</italic>, followed by intermediate infaunal species
<italic>Uvigerina</italic> spp. At stations 7,
9 and 10, foraminiferal Mn <inline-formula><mml:math id="M148" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca rations continued to increase with
increasing habitat depth or their ALD. However, an exception was noted at
station 8, where the highest Mn <inline-formula><mml:math id="M149" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca was recorded for the deep infaunal species
<italic>N. labradorica</italic> and not in the deeper-living <italic>C. fimbriata</italic>.</p>
      <p>Despite the clear pattern between foraminiferal Mn <inline-formula><mml:math id="M150" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca with respect to
microhabitat distribution, the Mn <inline-formula><mml:math id="M151" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca concentrations from the average living
depth do not exactly match the pore water profiles (Fig. 6), although direct
comparisons are not possible for stations 7 and 9. At station 8,
for example, the peak in the pore water Mn <inline-formula><mml:math id="M152" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca is found at a depth of
approximately 1 cm, whereas the highest foraminiferal Mn <inline-formula><mml:math id="M153" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios are
found in <italic>N. labradorica</italic>, with an ALD of 4.0 cm. At station 10, however, where pore water
Mn content is clearly increasing with sediment depth, foraminiferal Mn <inline-formula><mml:math id="M154" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca
ratios show a similar trend. At station 6, where pore water Mn content is
generally low, foraminiferal Mn <inline-formula><mml:math id="M155" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios are also low.</p>
      <p>Partitioning coefficients of Mn (<inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for each taxon were calculated
for stations 6, 8 and 10, where pore water data were available (Fig. 7,
Table S1). Calculations were based on pore water Mn concentrations at the
ALD of each species and their average Mn <inline-formula><mml:math id="M157" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios. The <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of <italic>E. batialis</italic> was
very low, ranging from 0.02 at station 10 to 0.03 at station 8. The
<inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of <italic>Uvigerina</italic> spp. was slightly higher, ranging from 0.18 to 0.56; and that
of <italic>B. spissa</italic> was similar, with an average <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of 0.36. The deep infaunal taxa
generally had higher <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, with a coefficient for <italic>N. labradorica</italic> of 1.24 and of 1.77
for <italic>C. fimbriata</italic>. However, at station 10 the calculated <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for <italic>N. labradorica</italic> was also low
(0.18).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Manganese partition coefficient DMn in foraminifera as a function
of average living depth of each species. In addition, the pore water (pw)
Mn <inline-formula><mml:math id="M163" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca profile is shown.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f07.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS4">
  <?xmltex \opttitle{Foraminiferal Mn\,$/$\,Ca ratios along the study transect}?><title>Foraminiferal Mn <inline-formula><mml:math id="M164" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios along the study transect</title>
      <p>The Mn <inline-formula><mml:math id="M165" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of <italic>Uvigerina</italic> spp. and <italic>B. spissa</italic> increased
with water depth (Fig. 8). Both of
these trends were statistically robust with Pearson correlation coefficients
of 0.43 (<inline-formula><mml:math id="M166" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 100) and 0.65 (<inline-formula><mml:math id="M168" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01; <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 79)
for <italic>Uvigerina</italic> spp. and <italic>B. spissa</italic>, respectively. Average
Mn <inline-formula><mml:math id="M170" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of <italic>E. batialis</italic> on the other hand declined slightly along the study
transect (Pearson correlation coefficient <inline-formula><mml:math id="M171" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.64 <inline-formula><mml:math id="M172" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01 <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 65),
whereas no trends in Mn <inline-formula><mml:math id="M174" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca with water depth were found for <italic>N. labradorica</italic> or <italic>C. fimbriata.</italic></p>
      <p>Only the Mn <inline-formula><mml:math id="M175" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of <italic>B. spissa</italic> correlated significantly with measured BWO content
(Pearson correlation coefficient <inline-formula><mml:math id="M176" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.59; <inline-formula><mml:math id="M177" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0,01; <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 79). For
<italic>Uvigerina</italic> spp. the highest Mn <inline-formula><mml:math id="M179" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios coincided with the lowest BWO content. For
none of the other taxa were systematic, statistically significant trends observed between BWO content and Mn <inline-formula><mml:math id="M180" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p>Variability in average Mn <inline-formula><mml:math id="M181" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of each species plotted
against the study transect from station 6 to station 10 <bold>(a)</bold> and along
the bottom water oxygenation <bold>(b)</bold>. The error bars represent the standard
error of the measurements.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://bg.copernicus.org/articles/14/3067/2017/bg-14-3067-2017-f08.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <?xmltex \opttitle{Intrashell variability in Mn\,$/$\,Ca ratios}?><title>Intrashell variability in Mn <inline-formula><mml:math id="M182" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios</title>
      <p>Traditionally, Mn <inline-formula><mml:math id="M183" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca in foraminiferal test carbonate is used to
indicate the presence of diagenetic Mn oxyhydroxides and Mn carbonates (e.g.
Boyle et al., 1983; Barker et al., 2003). However, studies applying
techniques such as LA (laser ablation)-ICP-MS, allow circumventing
surface contamination by a high depth resolution during the measurement (e.g.
Hathorne et al., 2003; Reichart
et al., 2003; Koho et al., 2015). In our study all measurements were also
conducted with application of LA-ICP-MS; hence, all surficial Mn contaminants
were excluded from data. In addition, all specimens analysed here were
stained with rose bengal, implying that they were alive, or very recently
alive, when collected. Due to the nature of the specimens being very recent,
the presence of any diagenetic coatings is unlikely and Mn <inline-formula><mml:math id="M184" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios reflect
true Mn incorporation into the shell walls.</p>
      <p>Another advantage of LA-ICP-MS is that it allows measurements of individual
foraminiferal chambers, providing information on the changes in the
elemental composition in relation to foraminiferal ontogeny or growth. In this
study no systematic variations were noted in the Mn <inline-formula><mml:math id="M185" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios and chamber
stages of any foraminifera (Fig. 4, Fig. S1). These observations are
consistent with work of Dueñas-Bohórquez (2010), who also noted no
clear trend in the Mn <inline-formula><mml:math id="M186" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios with chamber stages of <italic>Cibicidoides pachyderma</italic>. Therefore, it
appears that Mn <inline-formula><mml:math id="M187" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in benthic foraminifera are not substantially
influenced by ontogenetic processes, as it is occasionally reported for
other elements, e.g. Mg and B (e.g. Raitzsch et al., 2011), but are primarily
driven by environmental changes, such as redox conditions, affecting the
concentration of Mn in pore waters. This implies that these foraminifera did
not consistently calcify different chambers at different in-sediment depths,
with contrasting Mn concentrations. Effectively this rules out systematic
ontogenetic migration across oxygen gradients in the benthic foraminiferal species studied here.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <?xmltex \opttitle{Mn\,$/$\,Ca ratios as a function of microhabitat}?><title>Mn <inline-formula><mml:math id="M188" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios as a function of microhabitat</title>
      <p>Foraminifera from three microhabitats (shallow, intermediate and deep
infauna) were included in this study (Fig. 6): <italic>E. batialis</italic> representing the shallow
infaunal microhabitat, <italic>Uvigerina</italic> spp. and <italic>B. spissa</italic> representing the intermediate microhabitat,
and <italic>N. labradorica</italic> and <italic>C. fimbriata</italic> representing the deep infaunal microhabitat. At all stations, the
lowest Mn <inline-formula><mml:math id="M189" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were measured in the shallow-dwelling <italic>E. batialis</italic>. In general, with
deeper microhabitat distribution, the Mn <inline-formula><mml:math id="M190" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios appeared to increase
(Fig. 6). The only exception seemed to be <italic>C. fimbriata</italic> at station 8 with the average
Mn <inline-formula><mml:math id="M191" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratio slightly lower than that of the other deep-infaunal taxa, <italic>N. labradorica</italic>. These
results are in a good agreement with previous studies on foraminiferal Mn <inline-formula><mml:math id="M192" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca
ratios. In the Baltic Sea, for example, Groeneveld and Filipsson (2013)
showed that specimens of the shallow-dwelling <italic>Bulimina marginata</italic> were found to contain no or
very small amounts of manganese in their carbonate test, whereas elevated
Mn <inline-formula><mml:math id="M193" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were measured in deep infaunal <italic>Globobulimina turgida</italic>. Moreover the results from the
western Pacific presented here are in a good agreement with the TROXCHEM<inline-formula><mml:math id="M194" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>
model, a conceptual three-dimensional model, linking foraminiferal Mn
uptake, bottom water oxygenation and organic flux (Koho et al., 2015). Based
on this model under relatively eutrophic conditions, where the bottom waters
are still oxygenated, very low Mn concentrations are found in shallow
infaunal species. Deeper in the sediment where higher concentrations of
aqueous Mn are present in the pore water (namely station 10), an increase
in foraminiferal Mn <inline-formula><mml:math id="M195" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca is observed.</p>
      <p>Pore water Mn profiles and Mn <inline-formula><mml:math id="M196" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in foraminifera in combination with
their ALD match relatively closely at station 6 and 10. At stations 6,
pore water Mn concentrations were generally low; hence, the Mn <inline-formula><mml:math id="M197" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratio in
the <italic>Uvigerina</italic> spp. was also low. At station 10, where the greatest increase in the
pore water Mn content was noted, the deep infaunal <italic>N. labradorica</italic> also showed much higher
Mn <inline-formula><mml:math id="M198" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios than shallow-dwelling <italic>E. batialis. </italic>At station 8, however, where Mn <inline-formula><mml:math id="M199" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca
ratios peaked at just below 1 cm depth in sediment, the highest
Mn <inline-formula><mml:math id="M200" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were noted in <italic>N. labradorica</italic>, with an ALD of 4.0 cm. The apparent mismatch
between the pore water profiles and Mn <inline-formula><mml:math id="M201" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in foraminifera from their
ALD suggests that foraminifera may not always calcify at their observed ALD.
As the foraminiferal ALDs represent the average depth where foraminifera are
found, they may be skewed by a few individuals recovered from deeper or
shallower depth intervals. In addition, bimodal distributions, which were
seen for <italic>B. spissa</italic> at station 7 and <italic>Uvigerina</italic> spp. at stations 7 and 8 (Fontanier
et al., 2014), can be considered problematic in the case of ALD calculations.
However, this does not explain the discrepancy observed at station 8 as
the modes of maximum density and ALD of <italic>N. labradorica </italic>were alike: 4.5  and
4.0 cm, respectively.</p>
      <p>Calculated Mn partitioning coefficients (based on pore water concentrations
at ALDs) showed a large range in values, ranging from 0.02 for <italic>E. batialis</italic> to 1.77 for
<italic>C. fimbriata</italic>. This could imply large offsets between ALD and calcification depths, but
partition coefficients for Mn and other elements (e.g. Mg) have also been
shown to vary between species (e.g. Toyofuku et al., 2011; Wit et al., 2012;
Koho et al., 2015). Previous field-based estimates suggest that the <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
for benthic foraminifera is generally close to 1 (Glock et al., 2012; Koho
et al., 2015), whereas controlled growth experiments of Munsel et al. (2010)
estimated that Mn <inline-formula><mml:math id="M203" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios could even be above 1, with 2.6–10 times
higher ratios than in seawater. Irrespective of the observed differences in
<inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values of the species coming from similar depth habitats, it seems
that deep infaunal foraminifera, based on their Mn incorporation, are
calcifying in or close to the pore waters where they were collected from.
The shallow and intermediate infaunal species having <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> less than 1
based on their calculated ALD might calcify at a somewhat shallower depth where
Mn concentrations are lower or actually have substantially lower
<inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values.</p>
      <p>Foraminifera are known to migrate in the sediment and laboratory experiments have shown that changes in the sediment oxygenation typically result
in the migration of foraminifera to their preferred microhabitat (Gross, 2000;
Geslin et al., 2004). Although, no systematic ontogenetic migration was seen
in this study, foraminiferal migration is anticipated as all of the studied
taxa were found in a relatively wider range of sediment depths (Fontanier et al., 2014).
Therefore, foraminiferal migration may resolve some of the
discrepancies seen in the foraminiferal <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">Mn</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values and explain part of
the discrepancies between the foraminiferal Mn <inline-formula><mml:math id="M208" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios and Mn pore water
concentrations. Even relatively small-scale migration of intermediate and
deep infaunal taxa could result in relatively large changes in the ambient
pore water Mn content, which would be reflected in the test chemistry
during calcification. Furthermore, a closer observation of Mn <inline-formula><mml:math id="M209" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of
sediment-dwelling foraminifera shows that both intermediate and deep
infaunal species showed relatively higher range of Mn <inline-formula><mml:math id="M210" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca values at each
station (Figs. 4, 6). In contrast, the shallow-living <italic>E. batialis</italic>, which is expected to
mainly inhabit the surficial, more oxygenated sediments, displayed relatively
low variability. This suggests that the deeper habitat depth exposes
foraminifera to greater variations in pore water Mn concentration.
Alternatively, it should be noted that the foraminiferal Mn <inline-formula><mml:math id="M211" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca measurements
were carried out in a range of chambers, including younger and older ones
(Fig. 4), whereas pore water profiles represent a snapshot in time.
Therefore, some mismatch can be expected to result from variation in pore
water conditions through time.</p>
      <p>The relatively high Mn measured in deep infaunal foraminifera, and for <italic>B. spissa</italic> at
station 9 only, further implies that these taxa actively grow in
dysoxic sediments where pore water Mn concentrations are higher. Although
not shown for the species studied here, foraminifera are known to be capable
of denitrification (e.g. Risgaard-Petersen et al., 2006; Piña-Ochoa et al., 2010a)
and prolonged survival under anoxic conditions (Piña-Ochoa et al., 2010b).
Therefore, it is very likely that the deep infaunal taxa
studied here have also adapted to similar life strategies. Foraminiferal
calcification in the absence of oxygen was also recently demonstrated by
Nardelli et al. (2014), whose experimental approach demonstrated that three
benthic foraminiferal species (<italic>Ammonia tepida</italic>, <italic>Bulimina marginata</italic>
and <italic>Cassidulina laevigata</italic>) were not only able to survive under
anoxic conditions but also to form new chambers. Here we show that Mn <inline-formula><mml:math id="M212" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios
in benthic foraminifera can also be measured to identify calcification under
such conditions.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Implications for palaeoceanographic reconstructions</title>
      <p>In recent years, efforts have been made to develop new bottom water
oxygenation proxies via the application of foraminiferal Mn <inline-formula><mml:math id="M213" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios
(Glock et al., 2012; Groeneveld and Filipsson, 2013; McKay et al., 2015; Koho
et al., 2015). To date, direct statistically significant correlations between
bottom water oxygenation and foraminiferal Mn <inline-formula><mml:math id="M214" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios have been noted
only for the intermediate to deep infaunal <italic>M. barleeanus</italic> (Koho et
al., 2015). In our study a statistically significant correlation between
Mn <inline-formula><mml:math id="M215" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratio and BWO was also measured in the intermediate infaunal
foraminifera <italic>B. spissa</italic> (Pearson correlation coefficient: <inline-formula><mml:math id="M216" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.59,
<inline-formula><mml:math id="M217" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> &lt; 0.01, <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 79). Similarly in the study of Glock et
al. (2012), Mn <inline-formula><mml:math id="M219" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios measured in <italic>B. spissa</italic> from the
Peruvian margin seemed to respond to BWO and associated changes in Mn redox
chemistry, although the observed trend was not statistically significant.
However, in the case of the other intermediate infaunal species studied here,
namely <italic>Uvigerina</italic> spp., no robust statistical correlation with BWO
was observed, although the highest Mn <inline-formula><mml:math id="M220" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios still coincided with
the lowest BWO content (33 <inline-formula><mml:math id="M221" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M222" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Consistent with this
observation, the highest Mn <inline-formula><mml:math id="M223" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in <italic>Uvigerina peregrina</italic>
from the Arabian Sea were measured at sites with BWO contents of
20–40 <inline-formula><mml:math id="M224" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M225" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Koho et al., 2015). These observations give
further confidence that intermediate infaunal species may be the most
suitable proxies for BWO and redox reconstructions in the productivity
regimes studied here and the study of Koho et al. (2015). Their suitability
is most likely related to the vicinity of their microhabitat to the zone of
Mn reduction, leading to higher sensitivity for recording changes in redox
conditions.</p>
      <p>By contrast with intermediate infauna, no clear trends were observed along the
study transect in the Mn <inline-formula><mml:math id="M226" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios of deep or shallow infaunal species (Fig. 8).
The Mn <inline-formula><mml:math id="M227" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios were relatively, constantly low in shallow infaunal <italic>E. batialis</italic> or
relatively high in deep infaunal species. In the case of the shallow
infauna, the surficial microhabitat does not seem to expose foraminifera to
pore water Mn, leading to the hampering of the any redox signal. Therefore, our
data suggest that shallow infaunal taxa may not be suitable for the reconstruction of past redox conditions, in line with the results presented
in Koho et al. (2015). However, the exact response of deep versus
intermediate infauna to changes in bottom water oxygenation is most likely
to depend on the intricate interplay with organic matter loading. Although
productivity at our study site is anticipated to be relatively lower (annual
average around 46 mmol C<inline-formula><mml:math id="M228" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M229" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M230" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, Yokouchi et al., 2007) than in the
northern Arabian Sea (annual average 111 mmol C<inline-formula><mml:math id="M231" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M232" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M233" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, Barber et al.,
2001), where the TROXCHEM<inline-formula><mml:math id="M234" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> model was developed, fluxes must still be
relatively high, as shown by shallow nitrate penetration depth and
relatively high ammonium content in the pore waters (Fig. 3). Therefore,
influence on the intermediate infauna may also be anticipated here. However,
if the carbon loading is lower, and subsequently Mn reduction occurs deeper in the sediment, an influence on deeper infauna may be more
significant. In palaeo-studies where large changes in the carbon fluxes are
foreseen, Mn <inline-formula><mml:math id="M235" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in multiple species, including both intermediate and
deep infaunal taxa, should be measured simultaneously.</p>
      <p>Along the study transect, the total pore water Mn inventory did not
correlate with BWO content (Fig. 3), having a direct implication for
palaeoceanographic studies aiming to combine the two. In addition to
sedimentary redox chemistry, the total potential pool of Mn in the pore
water is related to the availability of Mn oxides in the sedimentary
environments (e.g. Van der Weijden et al., 1999; Law et al., 2009). In this
study both intermediate infaunal taxa (<italic>B. spissa</italic> and <italic>Uvigerina</italic> spp.) showed consistent
variability in their Mn <inline-formula><mml:math id="M236" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios along the study gradient (Fig. 8), with
ratios increasing with water depth. Therefore, these trends are likely to
reflect an increase in the pore water Mn along our study transects as also
shown by the pore water Mn profiles (Fig. 3). Concentrations of Mn<inline-formula><mml:math id="M237" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula>
were generally low at station 6, located at around 500 m water depth,
where the maximum dissolved Mn<inline-formula><mml:math id="M238" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> concentrations were only
1.4 <inline-formula><mml:math id="M239" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M240" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at sediment depths of 0.75 cm. With increasing water depth, both the
total depth of the in-sediment zone containing elevated dissolved Mn<inline-formula><mml:math id="M241" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula>
and total concentrations of dissolved manganese increased. At station 10,
at a water depth of 2000 m, relatively elevated pore water manganese
concentrations were found at sediment depths between 2 and 10 cm with a
maximum of 5.0 <inline-formula><mml:math id="M242" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, occurring at a sediment depth of 5.5 cm. This
pore water [Mn<inline-formula><mml:math id="M244" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula>] increase, which is also reflected in the
foraminiferal Mn <inline-formula><mml:math id="M245" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca, may, in addition to bottom water oxygenation, also be
related to an increase in Mn oxides in the sediment with increasing water
depth. Such changes could be due to sustained Mn recycling, which, with no Mn
escaping to the water column over time, results in the accumulation of high
Mn oxides close to the sediment–water interface. Alternatively, manganese
“shuttling”, or <?xmltex \hack{\mbox\bgroup}?>downslope<?xmltex \hack{\egroup}?> transport and focusing of Mn oxides, is well
described in the literature (e.g. Schulz et al., 2013; Jilbert et al., 2013),
typically explaining spatial differences in the distribution of solid-phase
manganese along BWO gradients. The slightly higher BWO conditions at the
deeper station might have allowed Mn being shuttled there. In addition,
although BWO content was higher than 33 <inline-formula><mml:math id="M246" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol L<inline-formula><mml:math id="M247" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at all sites during our
expedition, at some sites manganese may be able to escape the sedimentary
environment at times, leading to relatively Mn-depleted pore waters. This
may be the case especially at stations 6 and 8, where the
Mn reduction was taking place very close to the sediment surface at the time
(Fig. 3). Moreover, kinetics of manganese oxidation are known to be
relatively slow, and subsequently in some aqueous settings Mn<inline-formula><mml:math id="M248" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> has been
observed to penetrate into the overlying oxic water column in a metastable form
(e.g. Balzer, 1982; Pakhomova et al., 2007), resulting in Mn<inline-formula><mml:math id="M249" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> escaping
the sedimentary system and diagenetic recycling. At station 10, where the
highest pore water [Mn<inline-formula><mml:math id="M250" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula>] values are noted, Mn oxide reduction occurs well within the sediment (at depths of between 5 and 7 cm). Thus, here the internal cycling of Mn (hydr)oxides is likely to
be more efficient, resulting in Mn<inline-formula><mml:math id="M251" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> being efficiently trapped within
the system (Van der Weijden, 1999; Law et al., 2009). Palaeoceanographic
reconstructions applying Mn <inline-formula><mml:math id="M252" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios as a proxy for changes in redox
chemistry therefore need to take into account changes in the availability of
Mn oxides, which could influence sediment biogeochemistry and the incorporation
of Mn into foraminiferal test carbonate.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p>Here we show that Mn <inline-formula><mml:math id="M253" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in benthic foraminifera reflect their
microhabitat distribution, with Mn <inline-formula><mml:math id="M254" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios increasing with deeper in-sediment
habitat. Although appreciable differences between species in Mn partitioning
were present, the overall higher Mn <inline-formula><mml:math id="M255" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca measured in some intermediate and
deep-infaunal foraminifera suggest that these taxa actively grow and
calcify in dysoxic–anoxic sediments where pore water Mn concentrations
are also higher. We also show that Mn incorporation into foraminiferal
carbonate appears to reflect the ambient environmental conditions and is not
influenced by ontogenetic processes. With regard to palaeoceanographic
reconstructions, the application of Mn <inline-formula><mml:math id="M256" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca ratios in intermediate infaunal
foraminifera, such as <italic>B. spissa</italic>, which showed a statistically significant correlation
between BWO and Mn <inline-formula><mml:math id="M257" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> Ca, seems most promising, as their microhabitat appears
to expose them to systematic and broad variations in pore water manganese in
response to environmental changes.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p>Datasets (raw data of measurements) are given in
Table S1.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="https://doi.org/10.5194/bg-14-3067-2017-supplement" xlink:title="pdf">https://doi.org/10.5194/bg-14-3067-2017-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p>The authors would like to thank the captain and the crew of R/V <italic>Tansei Maru</italic>, as
well as other cruise participants, for the execution of a successful research
cruise. Hisami Suga is thanked for taking the bullet train and travelling
from Tokyo to Hachinohe port just to supply correct vials and caps for pore
water analyses. NWO-ALW (Earth and Life Sciences council) is acknowledged for
funding the open competition research proposal “Trace metal incorporation in
benthic foraminifera: linking ecology and pore water geochemistry” (grant
number: 820.01.011). This work was also supported by the Academy of Finland
(project number: 278827, 283453), JSPS KAKENHI (grant number: 25247085) and
the Gravitation grant NESSC from the Dutch Ministry of Education, Culture and
Science. Nina Keul and an anonymous reviewer are thanked for their comments,
which significantly improved the previous version of this
paper.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by:  Markus Kienast <?xmltex \hack{\newline}?>
Reviewed by:  Nina Keul and one anonymous referee</p></ack><ref-list>
    <title>References</title>

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    <!--<article-title-html>Benthic foraminiferal Mn  ∕ Ca ratios reflect microhabitat preferences</article-title-html>
<abstract-html><p class="p">The Mn ∕ Ca of calcium carbonate tests of living (rose-Bengal-stained) benthic foraminifera (<i>Elphidium batialis</i>,
<i>Uvigerina</i> spp., <i>Bolivina spissa</i>, <i>Nonionellina
labradorica</i> and <i>Chilostomellina fimbriata</i>) were determined in
relation to pore water manganese (Mn) concentrations for the first time along
a bottom water oxygen gradient across the continental slope along the NE
Japan margin (western Pacific). The local bottom water oxygen (BWO) gradient
differs from previous field study sites focusing on foraminiferal Mn ∕ Ca
and redox chemistry, therefore allowing further resolution of previously observed
trends. The Mn ∕ Ca ratios were analysed using laser ablation inductively coupled plasma-mass spectrometer
(ICP-MS), allowing single-chamber determination of Mn ∕ Ca. The incorporation of Mn
into the carbonate tests reflects environmental conditions and is not
influenced by ontogeny. The inter-species variability in Mn ∕ Ca
reflected foraminiferal in-sediment habitat preferences and associated pore
water chemistry but also showed large interspecific differences in Mn
partitioning. At each station, Mn ∕ Ca ratios were always lower in the
shallow infaunal <i>E. batialis</i>, occupying relatively oxygenated
sediments, compared to intermediate infaunal species, <i>Uvigerina</i> spp.
and <i>B. spissa</i>, which were typically found at greater depth, under more
reducing conditions. The highest Mn ∕ Ca was always recorded by the
deep infaunal species <i>N. labradorica</i> and <i>C. fimbriata</i>. Our
results suggest that although partitioning differs, Mn ∕ Ca ratios in the
intermediate infaunal taxa are promising tools for palaeoceanographic
reconstructions as their microhabitat exposes them to higher variability in
pore water Mn, thereby making them relatively sensitive recorders of redox
conditions and/or bottom water oxygenation.</p></abstract-html>
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