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  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-15-353-2018</article-id><title-group><article-title>Use of flow cytometry and stable isotope analysis
to<?xmltex \hack{\newline}?> determine phytoplankton uptake of wastewater<?xmltex \hack{\newline}?>
derived ammonium in a nutrient-rich river</article-title>
      </title-group><?xmltex \runningtitle{Use of flow cytometry and stable isotope analysis}?><?xmltex \runningauthor{C. M. Schmidt et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Schmidt</surname><given-names>Calla M.</given-names></name>
          <email>cischmidt@usfca.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Kraus</surname><given-names>Tamara E. C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5187-8644</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Young</surname><given-names>Megan B.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Kendall</surname><given-names>Carol</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>University of San Francisco, 2130 Fulton St, San Francisco, CA 94117, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>USGS California Water Science Center, 6000 J Street, Placer Hall, Sacramento, CA 95819, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>USGS National Research Program, 345 Middlefield Rd, Menlo Park, CA 94025, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Calla M. Schmidt (cischmidt@usfca.edu)</corresp></author-notes><pub-date><day>17</day><month>January</month><year>2018</year></pub-date>
      
      <volume>15</volume>
      <issue>1</issue>
      <fpage>353</fpage><lpage>367</lpage>
      <history>
        <date date-type="received"><day>5</day><month>May</month><year>2017</year></date>
           <date date-type="rev-request"><day>11</day><month>May</month><year>2017</year></date>
           <date date-type="rev-recd"><day>29</day><month>September</month><year>2017</year></date>
           <date date-type="accepted"><day>6</day><month>October</month><year>2017</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018.html">This article is available from https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018.pdf</self-uri>
      <abstract>
    <p id="d1e123">Anthropogenic alteration of the form and concentration of nitrogen (N) in
aquatic ecosystems is widespread. Understanding availability and uptake of
different N sources at the base of aquatic food webs is critical to
establishment of effective nutrient management programs. Stable isotopes of N
(<inline-formula><mml:math id="M1" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:math></inline-formula>N, <inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N) are often used to trace the sources of N fueling aquatic
primary production, but effective use of this approach requires obtaining a
reliable isotopic ratio for phytoplankton. In this study, we tested the use
of flow cytometry to isolate phytoplankton from bulk particulate organic
matter (POM) in a portion of the Sacramento River, California, during
river-scale nutrient manipulation experiments that involved halting
wastewater discharges high in ammonium (NH<inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>). Field samples were
collected using a Lagrangian approach, allowing us to measure changes in
phytoplankton N source in the presence and absence of wastewater-derived
NH<inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. Comparison of <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and
<inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-phytoplankton (<inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY) revealed that their
<inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values followed broadly similar trends. However, after 3 days
of downstream travel in the presence of wastewater treatment plant (WWTP)
effluent, <inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in the Sacramento River
differed by as much as 7 ‰. Using a stable isotope mixing model
approach, we estimated that in the presence of effluent between 40 and
90 % of phytoplankton N was derived from NH<inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> after 3 days of
downstream transport. An apparent gradual increase over time in the
proportion of NH<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> in the phytoplankton N pool suggests that either
very low phytoplankton growth rates resulted in an N turnover time that
exceeded the travel time sampled during this study, or a portion of the
phytoplankton community continued to access nitrate even in the presence of
elevated NH<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e279">Anthropogenic nutrient enrichment is impacting aquatic ecosystems globally
(Smith, 2003). In many aquatic environments anthropogenic N loading from
wastewater treatment plants, urea-based fertilizers, animal waste, and
aquaculture is shifting the form of N available to phytoplankton from the
oxidized form of nitrate (NO<inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>), to the reduced form of ammonium
(NH<inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>; Glibert et al., 2016). The form of N accessed by
phytoplankton is of concern because it has been linked to changes in
phytoplankton abundance and species composition, and may provide advantages
to less desirable species of phytoplankton, including cyanobacteria that
produce harmful toxins (Sharp et al., 2010; Dugdale et al., 2007; Glibert et
al., 2011; Paerl et al., 2014). Given widespread alteration to the form and
concentration of N in aquatic ecosystems, understanding the availability and
uptake of different N sources at the base of the food web is critical to
establishment of effective nutrient management programs (Paerl et al., 2016).</p>
      <p id="d1e306">Natural abundance stable isotope analysis is a powerful tool for tracing
nutrient sources because the isotopic composition of primary producers
reflects the isotopic composition of their source nutrients. Natural
abundance approaches have the advantage of integrating over space and time
and allowing measurement in situ, thus avoiding artifacts introduced in
lab-based studies (Finlay and Kendall, 2007). Natural abundance techniques
can also complement experimental studies that use <inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-labeled
substrates, which typically require short-term measurements in isolated
volumes that may not accurately represent field conditions. It is possible to
capitalize on the distinctive isotopic signatures of anthropogenic N sources,
such as sewage, to trace the transport of N through an ecosystem (McClelland
and Valiela, 1998; Gartner et al., 2002; Schlacher et al., 2005; DeBruyn and
Rassmussen, 2010; Pennino et al., 2016). Additionally, stable isotope
approaches have been used to distinguish between forms of dissolved inorganic
nitrogen (DIN) fueling primary production, which may be particularly
important in settings where anthropogenic activities are altering the
dominant available N form (York et al., 2007; Sugimoto et al., 2014; Lehman
et al., 2014).</p>
      <p id="d1e318">Using natural abundance stable isotope techniques to trace the transfer of
different N sources into the base of aquatic food webs requires obtaining a
reliable value for the <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N of phytoplankton (<inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY).
However, few field measurements of phytoplankton <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N have been
published due, in part, to the difficulty of isolating a pure phytoplankton
sample from bulk particulate organic matter (POM), which variously contains a
mixture of live and dead phytoplankton, macrophyte detritus, bacteria,
terrestrial soil and leaves, and/or sediment with varying isotopic
compositions. One approach to solving this challenge is to estimate
<inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY from <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM when the carbon-to-nitrogen atomic
ratio (C <inline-formula><mml:math id="M22" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N) or the carbon-to-chlorophyll <inline-formula><mml:math id="M23" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> weight ratio
(C <inline-formula><mml:math id="M24" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M25" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>) of POM indicate dominance by phytoplankton. Because
terrestrial plant matter, periphyton, and macrophytes have C <inline-formula><mml:math id="M26" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N
ratios &gt; 10, POM with a C <inline-formula><mml:math id="M27" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N ratio near the Redfield ratio
(6.6 to 8.3) has been used to identify POM primarily composed of
phytoplankton (Redfield, 1958; Thorp et al., 1998; Kendall et al., 2001).
Similarly, a ratio of C <inline-formula><mml:math id="M28" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M29" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> less than 200 has been used to identify
POM of algal origin, with C <inline-formula><mml:math id="M30" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M31" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> values above 200 indicating the
presence of significant detrital material (Parsons et al., 1961; Cifuentes et
al., 1989; Liu et al., 2007; Miller et al., 2013).</p>
      <p id="d1e448">To determine <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in settings where POM contains a mixture of
organic matter sources, additional approaches have been developed ranging
from physical separation of phytoplankton from bulk POM by density (Hamilton
et al., 2005), to isolation of specific compounds such as chlorophyll (Sachs,
et al., 1999) or amino acids (McClelland and Montoya, 2002) for
<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N analysis. More recently, Fawcett et al. (2011) demonstrated
the use of flow cytometry to separate phytoplankton from bulk POM for
<inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N analysis. Cell sorting by flow cytometry is an encouraging new
approach for investigations of phytoplankton N source because it
theoretically allows for detailed separation of the bulk POM pool into its
constituent parts (detritus, heterotrophic bacteria, phytoplankton,
prokaryotes, etc.) prior to isotopic analysis. For example, Fawcett et
al. (2011) were able to distinguish differences in prokaryote and eukaryote
phytoplankton access to upwelled NO<inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> in the Sargasso Sea using this
approach.</p>
      <p id="d1e497">Here we report results of a study that tested application of flow cytometry
to isolate phytoplankton from bulk POM prior to isotopic analysis in the
Sacramento River, California, in a portion of the San Francisco Bay
estuary (SFE), where NH<inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations are elevated by wastewater treatment plant (WWTP)
discharges. The goals of this study were to (1) determine the extent to which
<inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM reflects <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in the Sacramento River, and
(2) trace the in situ movement of WWTP-derived NH<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> into
phytoplankton using natural abundance stable isotope techniques. This study
was conducted during two river-scale nutrient manipulation experiments when
WWTP effluent discharges high in NH<inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> were halted, revealing changes
in <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in the presence and absence of
effluent. To our knowledge, this is the first application of flow cytometry
coupled with natural abundance stable isotope analysis in a highly disturbed
freshwater system.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F1"><caption><p id="d1e583">Map of the study reach on the lower 70 km of the Sacramento River,
California, showing the location where effluent from the Sacramento Regional
Wastewater Treatment Plant (WWTP) enters the river and the locations of
samples collected during the October and June experiments.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018-f01.pdf"/>

      </fig>

      <p id="d1e592">The Sacramento–San Joaquin River delta forms the landward portion of the San
Francisco Bay estuary (SFE), and freshwater flow into the delta comes
primarily from the Sacramento River (Fig. 1). A long-term decline in primary
productivity has been documented in the SFE (Jassby et al., 2002) with
resulting declines in zooplankton and pelagic fishes (Sommer et al., 2007). A
myriad of factors including changes in flow regime, loss of habitat,
introductions of exotic bivalve species, and inputs of contaminants and
nutrients are believed to contribute to observed reductions in primary
productivity (Jassby and Cloern, 2000; Kimmerer, 2002; Muller-Solger et al.,
2002; Jassby, 2008). Nutrient concentrations have been increasing in the SFE
over time due to agricultural and urban runoff, and increased WWTP
discharges, but discharge from Sacramento Regional WWTP is the main source of
NH<inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> in the upper SFE (Jassby, 2008).</p>
      <p id="d1e607">The Sacramento Regional WWTP currently employs secondary treatment that does
not include a nitrification step, and thus the majority of N in the final
effluent is in the form of NH<inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, with little to no N in the form of
NO<inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> or nitrite (NO<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>). The concentration of NH<inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> in
treated effluent ranges from 1700 to 2400 <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, while NO<inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
concentrations are typically below the WWTP's reported detection limit
of &lt; 0.7 <inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M (O'Donnell, 2014). Upstream of the WWTP, the
concentration of NH<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is commonly &lt; 0.4 <inline-formula><mml:math id="M52" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, while
concentrations of NH<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> &gt; 5 <inline-formula><mml:math id="M54" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M are commonly
measured downstream of the effluent input (Kratzer et al. 2001; Foe et al.,
2010). NH<inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> discharge from WWTPs is of particular concern in the SFE
because several studies have indicated that elevated concentrations of
NH<inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> may be causing changes in phytoplankton species abundance and
productivity (Dugdale et al., 2007, 2012; Glibert et al., 2011; Parker et
al., 2012b).</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Field sampling</title>
      <p id="d1e759">This study focused on the 70 km channelized reach of the Sacramento River
extending from the city of Sacramento downstream to Isleton (Fig. 1), where
the river enters the more hydrodynamically complicated network of open water,
channels, and sloughs called the Cache Slough Complex. The only significant
inflow within the study reach is just below the Freeport Bridge where treated
effluent from the Sacramento Regional WWTP enters the river. River flows are
monitored at two USGS stations located at Freeport Bridge and Walnut Grove
(<uri>http://waterdata.usgs.gov/usa/nwis</uri>).</p>
      <p id="d1e765">Field sampling was conducted as part of a larger experiment designed to
examine changes in phytoplankton abundance and community composition in the
presence and absence of wastewater in the Sacramento River. For details of
the field methods employed see Kraus et al. (2017a). Briefly, field sampling
was conducted using a Lagrangian sampling approach during 24 to 29 October 2013,
and 30 May to 4 June 2014 (hereafter referred to as the “October”
and “June” experiments). During both October and June, sampling was
coordinated with <inline-formula><mml:math id="M57" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 h WWTP effluent discharge holds, creating a
<inline-formula><mml:math id="M58" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 15 km stretch of effluent-free river to allow comparison of two
parcels of river water; one containing effluent high in NH<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M60" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF)
and one without effluent (<inline-formula><mml:math id="M61" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF). During both experiments, <inline-formula><mml:math id="M62" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M63" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF
parcels were tracked using small drifters and a high-speed mapping boat
equipped with a custom-designed flow-through instrument package that
continuously displayed surface–water measurements of specific conductance (a
conservative tracer), to assure that samples were collected from within the
designed parcel of water. On both dates <inline-formula><mml:math id="M64" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M65" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels were
tracked and sampled over <inline-formula><mml:math id="M66" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 h (3.5 days) as they traveled
<inline-formula><mml:math id="M67" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 70 km downstream (Fig. 1). Water samples were collected from both
parcels each day at approximately 2 to 3 h intervals between 08:00 and
17:00 PST. Discrete water samples were collected from 1 m depth using a 3k
Shurflo pump with clear <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> in. tubing using USGS protocols (USGS,
2006). Samples were pumped into 8 L Teflon Jerri cans and then transferred
into a 20 L churn (USGS, 2006) for subsampling. Subsamples were collected for
nutrients, chlorophyll <inline-formula><mml:math id="M69" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math id="M70" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>), plankton identification and enumeration,
flow cytometry, and stable isotope analysis.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <?xmltex \opttitle{Dissolved nutrients and chlorophyll~$a$ concentrations}?><title>Dissolved nutrients and chlorophyll <inline-formula><mml:math id="M71" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentrations</title>
      <p id="d1e892">Nutrient and Chl <inline-formula><mml:math id="M72" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration analyses were performed at the San
Francisco State University Romburg Tiburon Center as described in Parker et
al. (2012a). Water samples for nutrient analysis were immediately filtered
through Whatman GF/F filters using a 50 mL syringe into either 20 mL HDPE
scintillation vials or 50 mL centrifuge tubes, placed on dry ice, and then
stored at <inline-formula><mml:math id="M73" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M74" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analysis. Concentrations of NO<inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
and NO<inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> plus NO<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> were analyzed independently on a Bran and
Luebbe AutoAnalyzer II. Samples for NH<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> determination were collected
separately into 50 mL centrifuge tubes after similar filtration. These
samples were also immediately frozen for later analysis by colorimetry using
a Hewlett Packard diode array spectrophotometer with a 10 cm path cell
length.</p>
      <p id="d1e967">Chl <inline-formula><mml:math id="M79" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> samples were concentrated onto 25 mm, 0.70 <inline-formula><mml:math id="M80" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, Whatman
GF/F filters using a low vacuum (&lt; 250 mm Hg). Filters were stored
dry at 4 <inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for up to 1 week. Prior to analysis, Chl <inline-formula><mml:math id="M82" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> was
extracted from the filters in 90 % acetone for 24 h at 4 <inline-formula><mml:math id="M83" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.
Analysis was performed fluorometrically with a Turner Designs model 10AU
using 10 % hydrochloric acid to correct for and measure phaeophytin. The
fluorometer was calibrated with commercially available Chl <inline-formula><mml:math id="M84" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Turner
Designs chlorophyll <inline-formula><mml:math id="M85" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> standard).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <?xmltex \opttitle{Stable isotope analysis of POM, NO${}_{{3}}{}^{{-}}$, and NH${}_{{4}}{}^{{+}}$}?><title>Stable isotope analysis of POM, NO<inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, and NH<inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e1054">Stable isotope analysis of POM, NO<inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, and NH<inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> were performed
at the US Geological Survey's Menlo Park Stable Isotope Laboratory. Nitrogen
has two stable isotopes, <inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:math></inline-formula>N and <inline-formula><mml:math id="M91" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N, and the relative abundance of
<inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:math></inline-formula>N and <inline-formula><mml:math id="M93" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N is expressed as <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N
(‰) <inline-formula><mml:math id="M95" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> [(<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">sample</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">standard</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M97" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1] <inline-formula><mml:math id="M98" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1000,
where <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">sample</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the ratio of <inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N to <inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:math></inline-formula>N in a sample,
and <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">standard</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the ratio of the isotopes in AIR, the recognized
reference material for <inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values. Replicate samples for isotopic
analysis of POM were filtered through pre-combusted GF/F filters, and the
filters were frozen at <inline-formula><mml:math id="M104" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4 <inline-formula><mml:math id="M105" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analysis. Filters were
freeze-dried, ground, and vapor-acidified to remove any carbonate prior to
analysis for <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N and C <inline-formula><mml:math id="M107" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N atomic ratio using a
Carlo Erba NA 1500 elemental analyzer connected to a Micromass Optima mass
spectrometer. Analytical precision for duplicate analyses of the same POM
sample was &lt; 0.5 ‰ for <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N. Samples for
NO<inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> isotopes (<inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) were filtered through
0.45 <inline-formula><mml:math id="M112" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m nucleopore filters, and the filtrate was kept frozen until
analysis using a minor modification of the Sigman et al. (2001) and Casciotti
et al. (2002) microbial denitrifier method using a modified Gilson
autosampler connected to an IsoPrime mass spectrometer. Analytical precision
for sample replicates was 0.3 ‰ for <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.
Samples for <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N analysis of NH<inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) were prepared using a slightly modified version
of the method of Holmes et al. (1998) and analyzed on a Carlo Erba NA 1500
elemental analyzer connected to a Micromass Optima mass spectrometer (Kendall
et al., 2001). Analysis of <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> was only possible on
samples with NH<inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations greater than 15 <inline-formula><mml:math id="M122" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M.
Precision for this method based on replicate analyses of samples in this
study was &lt; 0.4 ‰.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS4">
  <?xmltex \opttitle{Flow cytometry and $\delta^{{15}}$N analysis of sorted
phytoplankton}?><title>Flow cytometry and <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N analysis of sorted
phytoplankton</title>
      <p id="d1e1440">At a subset of stations, samples were collected (<inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">27</mml:mn></mml:mrow></mml:math></inline-formula>) for flow
cytometric separation of phytoplankton from bulk POM for N-isotopic analysis
using the method described in detail in Fawcett et al. (2011). For each
sample, 1 L of river water was pre-concentrated onto four 47 mm
0.2 <inline-formula><mml:math id="M125" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m polycarbonate filters using a gentle vacuum (less than
<inline-formula><mml:math id="M126" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 250 mm Hg). Filters were transferred to 15 mL
Falcon tubes containing 10 mL of river water and 500 <inline-formula><mml:math id="M127" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L of
10 % paraformaldehyde (PFA) for a final concentration of 0.5 % PFA.
During preliminary investigations of Sacramento River water samples, we
observed substantial loss of intact phytoplankton cells when freezing and
thawing the pre-concentrated samples, and a degradation of Chl <inline-formula><mml:math id="M128" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
fluorescence after &gt; 9 days of storage. Because both of these
processes reduce the number of detectable phytoplankton cells in a sample
over time and potentially impact <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values of the sorted
populations, all of the samples included in this study were sorted from
unfrozen samples (stored in the dark at 4 <inline-formula><mml:math id="M130" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) within 1 week of
collection.</p>
      <p id="d1e1504">Phytoplankton were sorted with an Influx Cell Sorter in logarithmic mode (BD
Biosciences, San Jose, CA, USA). Prior to sorting, sample concentrates were
pre-filtered using 50 <inline-formula><mml:math id="M131" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m mesh size filters to prevent clogging of
the 70 <inline-formula><mml:math id="M132" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m diameter flow cytometer nozzle with large particles.
Phytoplankton were detected and sorted into a gate using forward scatter
(proxy for cell size) and chlorophyll fluorescence at 692 nm. Chlorophyll
autofluorescence was excited using a 200 mW, 488 nm sapphire
laser (Coherent, Santa Clara, CA, USA). To ensure a sufficient mass of
nitrogen, approximately 10 million cells were sorted directly into 5 mL
polystyrene Falcon tubes orientated at a low angle to the sort stream.
Regular analysis of sort purity (calculated by analyzing a sorted sample to
determine the proportion of events that fall within the target gate as a
percentage of total event rate) was approximately 95 %. Because the river
water contained abundant detritus and sediment, long sort times were required
to achieve high sample purity. Unfortunately, the need to sort unfrozen
samples within 1 week of collection precluded sorting sufficient cells for N
isotopic analysis of individual populations such as diatoms or cyanobacteria.
Instead, all phytoplankton cells were sorted into a single sample from each
location.</p>
      <p id="d1e1521">Sorted cells were transferred to 20 mL glass vials and dried down under
vacuum using a centrifugal evaporator. Dried phytoplankton samples were
redissolved in 20 <inline-formula><mml:math id="M133" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>L ultra-high-purity deionized water and
transferred into tin capsules. Capsules were dried overnight at
60 <inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and then crushed into small cubes. <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N analysis of
sorted phytoplankton was conducted using elements of a coupled Carlo Erba
CHNS-O EA1108 elemental analyzer and Thermo Finnigan GasBench II system with
automated cryo-trapping system that is connected to an isotope ratio mass
spectrometer (Thermo Fisher Scientific) at the UC Santa Cruz Stable Isotope
Laboratory facility. The elemental analyzer and GasBench were configured to
run small samples using the methods described in Polissar et al. (2009). In
this configuration, samples as small as 35 nmol N could be analyzed with a
precision of 0.5 ‰. Phytoplankton samples analyzed for this study
(<inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY) ranged in size between 50 and 100 nmol N. Analysis of
duplicate samples (sorted and analyzed independently) indicated a precision
of 0.8 ‰ for the entire method.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Quantification of phytoplankton N source</title>
      <p id="d1e1569">A two-end-member stable isotope mixing model approach was used to quantify
changes in the N source used by phytoplankton encountering elevated
NH<inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations downstream of the WWTP. Assuming that
NO<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> were the only available N sources, the
percentage of N uptake from NH<inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (%NH<inline-formula><mml:math id="M141" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) was calculated
according to Eq. (1), where <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N<inline-formula><mml:math id="M143" display="inline"><mml:msub><mml:mi/><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:math></inline-formula>,
<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N<inline-formula><mml:math id="M145" display="inline"><mml:msub><mml:mi/><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:math></inline-formula>, and <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N<inline-formula><mml:math id="M147" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">PHY</mml:mi></mml:msub></mml:math></inline-formula> are the N isotopic
ratios for NO<inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, NH<inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, and phytoplankton, and
<inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are the
enrichment factors for NO<inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, respectively (York et
al., 2007).
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M154" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.2}{9.2}\selectfont$\displaystyle}?><mml:mi mathvariant="italic">%</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>[</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi></mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">PHY</mml:mi></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mrow><mml:mo>[</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>]</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn mathvariant="normal">100</mml:mn><?xmltex \hack{$\egroup}?></mml:mrow></mml:math></disp-formula>
          The enrichment factor (<inline-formula><mml:math id="M155" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula>) is an expression of the magnitude of
fractionation between the substrate (e.g., NH<inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> or NO<inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) and
product (e.g., phytoplankton). Phytoplankton are able to process <inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:math></inline-formula>N
faster than <inline-formula><mml:math id="M159" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N (due to a difference in energy required to break bonds)
and this results in lower <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values in phytoplankton cells
compared to their nutrient source as long as the nutrient source is not
completely exhausted. In an open system when N substrates are not used to
exhaustion, <inline-formula><mml:math id="M161" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> can be approximated as the instantaneous
difference between <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N<inline-formula><mml:math id="M163" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">substrate</mml:mi></mml:msub></mml:math></inline-formula> and
<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N<inline-formula><mml:math id="M165" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">product</mml:mi></mml:msub></mml:math></inline-formula>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e2029">Summary of conditions in the two water parcels sampled in October
2013; one parcel did not receive effluent (<inline-formula><mml:math id="M166" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF) and one parcel did receive
effluent (<inline-formula><mml:math id="M167" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF) as it passed the wastewater treatment plant (WWTP). A
travel time of zero represents the time each parcel passed the location where
effluent from the WWTP enters the river.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="11">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Parcel</oasis:entry>  
         <oasis:entry colname="col2">Travel</oasis:entry>  
         <oasis:entry colname="col3">Chl <inline-formula><mml:math id="M168" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">[NO<inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col5">[NH<inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">POM C <inline-formula><mml:math id="M175" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col9">C <inline-formula><mml:math id="M176" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M177" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> N-POM</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> N-PHY</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">time (h)</oasis:entry>  
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M180" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g L<inline-formula><mml:math id="M181" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M182" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M)</oasis:entry>  
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M183" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M)</oasis:entry>  
         <oasis:entry colname="col6">(<inline-formula><mml:math id="M184" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col7">(<inline-formula><mml:math id="M185" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col8">(atomic)</oasis:entry>  
         <oasis:entry colname="col9">(wt <inline-formula><mml:math id="M186" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> wt)</oasis:entry>  
         <oasis:entry colname="col10">(<inline-formula><mml:math id="M187" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col11">(<inline-formula><mml:math id="M188" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M189" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M190" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18.9</oasis:entry>  
         <oasis:entry colname="col3">8.0</oasis:entry>  
         <oasis:entry colname="col4">2.8</oasis:entry>  
         <oasis:entry colname="col5">0.6</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.9</oasis:entry>  
         <oasis:entry colname="col9">24.2</oasis:entry>  
         <oasis:entry colname="col10">6.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M191" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M192" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.2</oasis:entry>  
         <oasis:entry colname="col3">5.4</oasis:entry>  
         <oasis:entry colname="col4">2.7</oasis:entry>  
         <oasis:entry colname="col5">0.7</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.4</oasis:entry>  
         <oasis:entry colname="col9">27.9</oasis:entry>  
         <oasis:entry colname="col10">4.9</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M193" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M194" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12.0</oasis:entry>  
         <oasis:entry colname="col3">7.1</oasis:entry>  
         <oasis:entry colname="col4">2.8</oasis:entry>  
         <oasis:entry colname="col5">0.8</oasis:entry>  
         <oasis:entry colname="col6">8.8</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.8</oasis:entry>  
         <oasis:entry colname="col9">22.5</oasis:entry>  
         <oasis:entry colname="col10">6.0</oasis:entry>  
         <oasis:entry colname="col11">6.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M195" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">5.0</oasis:entry>  
         <oasis:entry colname="col3">4.0</oasis:entry>  
         <oasis:entry colname="col4">3.2</oasis:entry>  
         <oasis:entry colname="col5">1.4</oasis:entry>  
         <oasis:entry colname="col6">9.1</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.8</oasis:entry>  
         <oasis:entry colname="col9">33.7</oasis:entry>  
         <oasis:entry colname="col10">6.4</oasis:entry>  
         <oasis:entry colname="col11">6.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M196" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">8.2</oasis:entry>  
         <oasis:entry colname="col3">3.3</oasis:entry>  
         <oasis:entry colname="col4">3.3</oasis:entry>  
         <oasis:entry colname="col5">1.2</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.2</oasis:entry>  
         <oasis:entry colname="col9">36.6</oasis:entry>  
         <oasis:entry colname="col10">3.0</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M197" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">10.3</oasis:entry>  
         <oasis:entry colname="col3">2.9</oasis:entry>  
         <oasis:entry colname="col4">3.1</oasis:entry>  
         <oasis:entry colname="col5">0.8</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.2</oasis:entry>  
         <oasis:entry colname="col9">56.8</oasis:entry>  
         <oasis:entry colname="col10">5.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M198" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">12.9</oasis:entry>  
         <oasis:entry colname="col3">4.9</oasis:entry>  
         <oasis:entry colname="col4">3.4</oasis:entry>  
         <oasis:entry colname="col5">1.9</oasis:entry>  
         <oasis:entry colname="col6">8.6</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.4</oasis:entry>  
         <oasis:entry colname="col9">35.3</oasis:entry>  
         <oasis:entry colname="col10">4.8</oasis:entry>  
         <oasis:entry colname="col11">6.6</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M199" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">29.5</oasis:entry>  
         <oasis:entry colname="col3">3.5</oasis:entry>  
         <oasis:entry colname="col4">4.4</oasis:entry>  
         <oasis:entry colname="col5">4.3</oasis:entry>  
         <oasis:entry colname="col6">8.1</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>  
         <oasis:entry colname="col9">20.5</oasis:entry>  
         <oasis:entry colname="col10"/>  
         <oasis:entry colname="col11">4.6</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M200" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">32.5</oasis:entry>  
         <oasis:entry colname="col3">3.5</oasis:entry>  
         <oasis:entry colname="col4">3.5</oasis:entry>  
         <oasis:entry colname="col5">1.2</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.4</oasis:entry>  
         <oasis:entry colname="col9">40.4</oasis:entry>  
         <oasis:entry colname="col10">5.6</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M201" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">34.5</oasis:entry>  
         <oasis:entry colname="col3">3.0</oasis:entry>  
         <oasis:entry colname="col4">5.4</oasis:entry>  
         <oasis:entry colname="col5">7.8</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.6</oasis:entry>  
         <oasis:entry colname="col9">26.4</oasis:entry>  
         <oasis:entry colname="col10">2.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M202" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">36.9</oasis:entry>  
         <oasis:entry colname="col3">5.4</oasis:entry>  
         <oasis:entry colname="col4">7.7</oasis:entry>  
         <oasis:entry colname="col5">7.0</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.7</oasis:entry>  
         <oasis:entry colname="col9">36.6</oasis:entry>  
         <oasis:entry colname="col10">2.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M203" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">53.6</oasis:entry>  
         <oasis:entry colname="col3">4.3</oasis:entry>  
         <oasis:entry colname="col4">6.4</oasis:entry>  
         <oasis:entry colname="col5">2.1</oasis:entry>  
         <oasis:entry colname="col6">7.6</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.7</oasis:entry>  
         <oasis:entry colname="col9">21.3</oasis:entry>  
         <oasis:entry colname="col10">4.6</oasis:entry>  
         <oasis:entry colname="col11">4.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M204" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">56.0</oasis:entry>  
         <oasis:entry colname="col3">4.0</oasis:entry>  
         <oasis:entry colname="col4">8.7</oasis:entry>  
         <oasis:entry colname="col5">2.4</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.6</oasis:entry>  
         <oasis:entry colname="col9">32.5</oasis:entry>  
         <oasis:entry colname="col10">3.5</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M205" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">59.0</oasis:entry>  
         <oasis:entry colname="col3">6.4</oasis:entry>  
         <oasis:entry colname="col4">11.1</oasis:entry>  
         <oasis:entry colname="col5">18.2</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.1</oasis:entry>  
         <oasis:entry colname="col9">30.3</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M206" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M207" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">61.0</oasis:entry>  
         <oasis:entry colname="col3">6.1</oasis:entry>  
         <oasis:entry colname="col4">15.3</oasis:entry>  
         <oasis:entry colname="col5">24.4</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.7</oasis:entry>  
         <oasis:entry colname="col9">19.3</oasis:entry>  
         <oasis:entry colname="col10">0.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M208" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">77.1</oasis:entry>  
         <oasis:entry colname="col3">1.8</oasis:entry>  
         <oasis:entry colname="col4">14.0</oasis:entry>  
         <oasis:entry colname="col5">5.2</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.9</oasis:entry>  
         <oasis:entry colname="col9">23.2</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M209" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.5</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M210" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">80.2</oasis:entry>  
         <oasis:entry colname="col3">1.6</oasis:entry>  
         <oasis:entry colname="col4">9.4</oasis:entry>  
         <oasis:entry colname="col5">4.9</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.8</oasis:entry>  
         <oasis:entry colname="col9">72.3</oasis:entry>  
         <oasis:entry colname="col10">2.9</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M211" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">82.5</oasis:entry>  
         <oasis:entry colname="col3">2.1</oasis:entry>  
         <oasis:entry colname="col4">9.8</oasis:entry>  
         <oasis:entry colname="col5">3.0</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.9</oasis:entry>  
         <oasis:entry colname="col9">28.9</oasis:entry>  
         <oasis:entry colname="col10">2.2</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M212" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">85.5</oasis:entry>  
         <oasis:entry colname="col3">3.3</oasis:entry>  
         <oasis:entry colname="col4">9.0</oasis:entry>  
         <oasis:entry colname="col5">6.1</oasis:entry>  
         <oasis:entry colname="col6">7.1</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.9</oasis:entry>  
         <oasis:entry colname="col9">38.6</oasis:entry>  
         <oasis:entry colname="col10">2.2</oasis:entry>  
         <oasis:entry colname="col11">2.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M213" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M214" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18.7</oasis:entry>  
         <oasis:entry colname="col3">4.7</oasis:entry>  
         <oasis:entry colname="col4">3.6</oasis:entry>  
         <oasis:entry colname="col5">0.4</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.8</oasis:entry>  
         <oasis:entry colname="col9">20.0</oasis:entry>  
         <oasis:entry colname="col10">7.8</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M215" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M216" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.5</oasis:entry>  
         <oasis:entry colname="col3">7.6</oasis:entry>  
         <oasis:entry colname="col4">3.6</oasis:entry>  
         <oasis:entry colname="col5">0.5</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.3</oasis:entry>  
         <oasis:entry colname="col9">19.7</oasis:entry>  
         <oasis:entry colname="col10">6.8</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M217" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M218" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12.5</oasis:entry>  
         <oasis:entry colname="col3">6.3</oasis:entry>  
         <oasis:entry colname="col4">3.5</oasis:entry>  
         <oasis:entry colname="col5">0.5</oasis:entry>  
         <oasis:entry colname="col6">9.3</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.1</oasis:entry>  
         <oasis:entry colname="col9">21.0</oasis:entry>  
         <oasis:entry colname="col10">7.4</oasis:entry>  
         <oasis:entry colname="col11">7.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M219" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">3.3</oasis:entry>  
         <oasis:entry colname="col3">4.3</oasis:entry>  
         <oasis:entry colname="col4">4.0</oasis:entry>  
         <oasis:entry colname="col5">98.5</oasis:entry>  
         <oasis:entry colname="col6">6.7</oasis:entry>  
         <oasis:entry colname="col7">7.9</oasis:entry>  
         <oasis:entry colname="col8">7.2</oasis:entry>  
         <oasis:entry colname="col9">57.4</oasis:entry>  
         <oasis:entry colname="col10">3.2</oasis:entry>  
         <oasis:entry colname="col11">5.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M220" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">6.3</oasis:entry>  
         <oasis:entry colname="col3">2.8</oasis:entry>  
         <oasis:entry colname="col4">4.4</oasis:entry>  
         <oasis:entry colname="col5">101.3</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.9</oasis:entry>  
         <oasis:entry colname="col9">71.2</oasis:entry>  
         <oasis:entry colname="col10">1.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M221" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">9.1</oasis:entry>  
         <oasis:entry colname="col3">7.3</oasis:entry>  
         <oasis:entry colname="col4">4.7</oasis:entry>  
         <oasis:entry colname="col5">92.0</oasis:entry>  
         <oasis:entry colname="col6">6.5</oasis:entry>  
         <oasis:entry colname="col7">8.3</oasis:entry>  
         <oasis:entry colname="col8">6.8</oasis:entry>  
         <oasis:entry colname="col9">27.9</oasis:entry>  
         <oasis:entry colname="col10">1.2</oasis:entry>  
         <oasis:entry colname="col11">1.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M222" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">11.7</oasis:entry>  
         <oasis:entry colname="col3">4.2</oasis:entry>  
         <oasis:entry colname="col4">4.9</oasis:entry>  
         <oasis:entry colname="col5">94.5</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.4</oasis:entry>  
         <oasis:entry colname="col9">37.5</oasis:entry>  
         <oasis:entry colname="col10">1.2</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M223" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">29.2</oasis:entry>  
         <oasis:entry colname="col3">2.1</oasis:entry>  
         <oasis:entry colname="col4">6.7</oasis:entry>  
         <oasis:entry colname="col5">63.3</oasis:entry>  
         <oasis:entry colname="col6">5.4</oasis:entry>  
         <oasis:entry colname="col7">8.8</oasis:entry>  
         <oasis:entry colname="col8">6.8</oasis:entry>  
         <oasis:entry colname="col9">65.7</oasis:entry>  
         <oasis:entry colname="col10">1.2</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M224" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">32.0</oasis:entry>  
         <oasis:entry colname="col3">3.1</oasis:entry>  
         <oasis:entry colname="col4">7.0</oasis:entry>  
         <oasis:entry colname="col5">77.0</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.2</oasis:entry>  
         <oasis:entry colname="col9">53.5</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M225" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M226" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">34.0</oasis:entry>  
         <oasis:entry colname="col3">2.0</oasis:entry>  
         <oasis:entry colname="col4">7.5</oasis:entry>  
         <oasis:entry colname="col5">76.5</oasis:entry>  
         <oasis:entry colname="col6">4.2</oasis:entry>  
         <oasis:entry colname="col7">8.3</oasis:entry>  
         <oasis:entry colname="col8">7.1</oasis:entry>  
         <oasis:entry colname="col9">70.0</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M227" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.2</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M228" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M229" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">52.3</oasis:entry>  
         <oasis:entry colname="col3">2.1</oasis:entry>  
         <oasis:entry colname="col4">13.0</oasis:entry>  
         <oasis:entry colname="col5">86.3</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.5</oasis:entry>  
         <oasis:entry colname="col9">48.7</oasis:entry>  
         <oasis:entry colname="col10">1.7</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M230" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">55.9</oasis:entry>  
         <oasis:entry colname="col3">4.3</oasis:entry>  
         <oasis:entry colname="col4">13.8</oasis:entry>  
         <oasis:entry colname="col5">82.7</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">8.3</oasis:entry>  
         <oasis:entry colname="col9">26.2</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M231" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.4</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M232" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">59.0</oasis:entry>  
         <oasis:entry colname="col3">2.3</oasis:entry>  
         <oasis:entry colname="col4">15.6</oasis:entry>  
         <oasis:entry colname="col5">85.1</oasis:entry>  
         <oasis:entry colname="col6">2.6</oasis:entry>  
         <oasis:entry colname="col7">9.4</oasis:entry>  
         <oasis:entry colname="col8">8.5</oasis:entry>  
         <oasis:entry colname="col9">49.5</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M233" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M234" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M235" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">76.7</oasis:entry>  
         <oasis:entry colname="col3">2.5</oasis:entry>  
         <oasis:entry colname="col4">28.8</oasis:entry>  
         <oasis:entry colname="col5">71.2</oasis:entry>  
         <oasis:entry colname="col6">1.7</oasis:entry>  
         <oasis:entry colname="col7">9.9</oasis:entry>  
         <oasis:entry colname="col8">8.0</oasis:entry>  
         <oasis:entry colname="col9">38.1</oasis:entry>  
         <oasis:entry colname="col10">0.5</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M236" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M237" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">78.9</oasis:entry>  
         <oasis:entry colname="col3">1.6</oasis:entry>  
         <oasis:entry colname="col4">9.4</oasis:entry>  
         <oasis:entry colname="col5">77.2</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">9.8</oasis:entry>  
         <oasis:entry colname="col9">53.4</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M238" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M239" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">82.6</oasis:entry>  
         <oasis:entry colname="col3">1.1</oasis:entry>  
         <oasis:entry colname="col4">20.0</oasis:entry>  
         <oasis:entry colname="col5">78.0</oasis:entry>  
         <oasis:entry colname="col6">1.8</oasis:entry>  
         <oasis:entry colname="col7">9.7</oasis:entry>  
         <oasis:entry colname="col8">8.2</oasis:entry>  
         <oasis:entry colname="col9">87.4</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M240" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.1</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
      <p id="d1e3879">During the October and June experiments, tidally averaged flow in the
Sacramento River was <inline-formula><mml:math id="M241" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 200 m<inline-formula><mml:math id="M242" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Due to tidal influence,
river velocities at the top of the reach ranged from <inline-formula><mml:math id="M244" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.06 to
<inline-formula><mml:math id="M245" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.40 m s<inline-formula><mml:math id="M246" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, while farther downstream river velocities ranged from
<inline-formula><mml:math id="M247" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.11 to <inline-formula><mml:math id="M248" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>0.46 m s<inline-formula><mml:math id="M249" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, for an average velocity of about
0.18 m s<inline-formula><mml:math id="M250" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Slack flow and flow reversals occurred around midday
during the October sampling, and in the early morning and late afternoon
during the June sampling. Water temperatures in October were
<inline-formula><mml:math id="M251" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 16.5 <inline-formula><mml:math id="M252" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, whereas the river was warmer in June
(<inline-formula><mml:math id="M253" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 22 <inline-formula><mml:math id="M254" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). Chl <inline-formula><mml:math id="M255" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration at the top of the study reach
was 8 <inline-formula><mml:math id="M256" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g L<inline-formula><mml:math id="M257" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in October and 20 <inline-formula><mml:math id="M258" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g L<inline-formula><mml:math id="M259" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in
June. During both sampling periods large declines in Chl <inline-formula><mml:math id="M260" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration
were observed in all parcels as they traveled downstream starting
<inline-formula><mml:math id="M261" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 16 km above the WWTP, such that by the time the parcels reached the
most downstream sampling points Chl <inline-formula><mml:math id="M262" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentrations were about
2 <inline-formula><mml:math id="M263" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g L<inline-formula><mml:math id="M264" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Table 1; Kraus et al., 2017a).</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S3.SS1">
  <?xmltex \opttitle{Downstream trends in NO${}_{{3}}{}^{{-}}$ and NH${}_{{4}}{}^{{+}}$
concentrations}?><title>Downstream trends in NO<inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
concentrations</title>
      <p id="d1e4126">Nitrate concentrations increased downstream during the October and June
campaigns in both <inline-formula><mml:math id="M267" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M268" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels; however, the downstream gains in
NO<inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> were more modest in <inline-formula><mml:math id="M270" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels (Fig. 2). During both the
October and June sampling campaigns, NH<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations were low
(&lt; 1.0 <inline-formula><mml:math id="M272" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M) upstream of the WWTP. Immediately downstream of
the WWTP NH<inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations increased in the <inline-formula><mml:math id="M274" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcel to
<inline-formula><mml:math id="M275" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 <inline-formula><mml:math id="M276" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M in October and <inline-formula><mml:math id="M277" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 60 <inline-formula><mml:math id="M278" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M in June. The
maximum NH<inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentration in October was higher than in June due to
a greater percentage of effluent in the river (4.0 % in October compared
to 2.7 % in June; Kraus et al., 2017a). During the 3 days of downriver
travel following effluent addition, riverine NH<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations
decreased modestly in the <inline-formula><mml:math id="M281" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels. In contrast, NH<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
concentration remained less than 20 <inline-formula><mml:math id="M283" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M downstream of the WWTP in
the <inline-formula><mml:math id="M284" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels, and a slight increase in concentration was observed
during downstream transit. In June, phytoplankton growth rates may have been
N limited at the most upstream locations, as the concentration of DIN was
close to the half-saturation constant of 7 <inline-formula><mml:math id="M285" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M frequently used to
model phytoplankton growth (Travis et al., 2015).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p id="d1e4297">Concentration of NO<inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> <bold>(a)</bold> and NH<inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> <bold>(b)</bold> in samples
collected during the October and June Lagrangian experiments from parcels
that either received effluent (<inline-formula><mml:math id="M288" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF) or did not receive effluent (<inline-formula><mml:math id="M289" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF) as
they traveled past the WWTP. Samples are plotted by travel time, where zero
represents the time the parcel passed the location where effluent high in
NH<inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> enters the river.</p></caption>
          <?xmltex \igopts{width=204.859843pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018-f02.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <?xmltex \opttitle{Downstream trends in $\delta^{{15}}$N of NO${}_{{3}}{}^{{-}}$ and
NH${}_{{4}}{}^{{+}}$}?><title>Downstream trends in <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N of NO<inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
NH<inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e4404">Table 1 presents <inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values of NO<inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> for
all samples collected during the October and June campaigns with
concentrations sufficient for analysis. During the October field campaign,
<inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> started at 8.5 ‰ upstream of the WWTP
and decreased downstream in both the <inline-formula><mml:math id="M299" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M300" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels. The magnitude
of the decrease was greatest in the parcel containing wastewater effluent;
over 83 h of travel downstream of the WWTP <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
decreased by 7.5 ‰ in the <inline-formula><mml:math id="M303" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcel, whereas
<inline-formula><mml:math id="M304" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> only decreased by 1.6 ‰ in the <inline-formula><mml:math id="M306" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF
parcel. In June, upstream values for <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> were lower
than in October (3–5 ‰), and remained relatively stable as both the
<inline-formula><mml:math id="M309" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M310" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels traveled downstream (Fig. 5).</p>
      <p id="d1e4578">Due to low concentrations of NH<inline-formula><mml:math id="M311" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> upstream of the WWTP, it was only
possible to measure <inline-formula><mml:math id="M312" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> in the <inline-formula><mml:math id="M314" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels
downstream of the WWTP. In the <inline-formula><mml:math id="M315" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels <inline-formula><mml:math id="M316" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
increased from 7.9 to 9.7 ‰ in October and from 8.0 ‰ to
10.7 ‰ in June with downstream travel. We also observed that
<inline-formula><mml:math id="M318" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> increased while NO<inline-formula><mml:math id="M320" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentration
increased and <inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> values decreased during transit in
parcels containing effluent, which suggests nitrification was occurring. This
observation is consistent with high rates of nitrification reported in the
Sacramento River (Hager and Schemel, 1992; Parker et al., 2012a; O'Donnell
2014; Damashek et al., 2016; Kraus et al., 2017b).</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Downstream trends in particulate organic matter and
phytoplankton</title>
      <p id="d1e4720"><inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM values decreased over the study reach in all parcels,
though downstream trends were not monotonic: in particular, we observed
periods during the night when <inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM
increased &gt; 2 ‰ (Fig. 3). The addition of effluent
caused a larger decrease in <inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM values during transit compared
to the <inline-formula><mml:math id="M326" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels in October and June. C <inline-formula><mml:math id="M327" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N atomic ratios in all POM
samples were near the Redfield ratio, ranging from 6.8 to 8.9, suggesting the
POM was primarily phytoplankton (Tables 1 and 2). C <inline-formula><mml:math id="M328" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M329" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
(weight <inline-formula><mml:math id="M330" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> weight) ratios of POM ranged from 10 to 170 for all samples, with a
median value of 35, which is also consistent with phytoplankton-dominated POM
during October and June (Table 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e4793">Comparison of Chl <inline-formula><mml:math id="M331" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM, and <inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in
parcels sampled in October <bold>(a, c)</bold> and June <bold>(b, d)</bold> for
parcels that did receive effluent from the WWTP (<inline-formula><mml:math id="M334" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF) and parcels that did
not receive effluent (<inline-formula><mml:math id="M335" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF). Samples are plotted by travel time, where zero
indicates the time the parcel passed the location where effluent high in
NH<inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> enters the river. Shaded areas indicate nighttime.</p></caption>
          <?xmltex \igopts{width=349.968898pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018-f03.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p id="d1e4866">Comparison of <inline-formula><mml:math id="M337" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY for October
and June experiments for parcels that received effluent (<inline-formula><mml:math id="M339" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF) and parcels
that did not receive effluent (<inline-formula><mml:math id="M340" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF). The grey circle indicates the six
<inline-formula><mml:math id="M341" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF samples collected &gt; 20 h downstream of the WWTP.</p></caption>
          <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018-f04.pdf"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p id="d1e4922">Summary of conditions in the two parcels sampled in June 2014; one
parcel did not receive effluent (<inline-formula><mml:math id="M342" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF) and one parcel did receive effluent
(<inline-formula><mml:math id="M343" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF) as it passed the wastewater treatment plant (WWTP). A travel time of
zero represents the time each parcel passed the location where effluent from
the WWTP enters the river.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="11">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Parcel</oasis:entry>  
         <oasis:entry colname="col2">Travel</oasis:entry>  
         <oasis:entry colname="col3">Chl <inline-formula><mml:math id="M344" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">[NO<inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col5">[NH<inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M347" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">POM C <inline-formula><mml:math id="M351" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col9">C <inline-formula><mml:math id="M352" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M353" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math id="M354" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> N-POM</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> N-PHY</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">time (h)</oasis:entry>  
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M356" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g L<inline-formula><mml:math id="M357" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M358" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M)</oasis:entry>  
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M359" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M)</oasis:entry>  
         <oasis:entry colname="col6">(<inline-formula><mml:math id="M360" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col7">(<inline-formula><mml:math id="M361" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col8">(atomic)</oasis:entry>  
         <oasis:entry colname="col9">(wt <inline-formula><mml:math id="M362" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> wt)</oasis:entry>  
         <oasis:entry colname="col10">(<inline-formula><mml:math id="M363" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col11">(<inline-formula><mml:math id="M364" display="inline"><mml:mi mathvariant="normal">‰</mml:mi></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M365" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M366" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>26.1</oasis:entry>  
         <oasis:entry colname="col3">20.7</oasis:entry>  
         <oasis:entry colname="col4">0.4</oasis:entry>  
         <oasis:entry colname="col5">0.6</oasis:entry>  
         <oasis:entry colname="col6">3.8</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.0</oasis:entry>  
         <oasis:entry colname="col9">10.3</oasis:entry>  
         <oasis:entry colname="col10">5.7</oasis:entry>  
         <oasis:entry colname="col11">2.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M367" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M368" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>23.4</oasis:entry>  
         <oasis:entry colname="col3">10.5</oasis:entry>  
         <oasis:entry colname="col4">0.4</oasis:entry>  
         <oasis:entry colname="col5">0.3</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.1</oasis:entry>  
         <oasis:entry colname="col9">35.4</oasis:entry>  
         <oasis:entry colname="col10">6.2</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M369" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M370" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.6</oasis:entry>  
         <oasis:entry colname="col3">8.8</oasis:entry>  
         <oasis:entry colname="col4">0.8</oasis:entry>  
         <oasis:entry colname="col5">0.8</oasis:entry>  
         <oasis:entry colname="col6">3.5</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.6</oasis:entry>  
         <oasis:entry colname="col9">41.5</oasis:entry>  
         <oasis:entry colname="col10">5.1</oasis:entry>  
         <oasis:entry colname="col11">4.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M371" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M372" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.4</oasis:entry>  
         <oasis:entry colname="col3">6.6</oasis:entry>  
         <oasis:entry colname="col4">1.5</oasis:entry>  
         <oasis:entry colname="col5">1.7</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">6.8</oasis:entry>  
         <oasis:entry colname="col9">19.5</oasis:entry>  
         <oasis:entry colname="col10">6.1</oasis:entry>  
         <oasis:entry colname="col11">4.6</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M373" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">0.7</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">1.8</oasis:entry>  
         <oasis:entry colname="col5">1.4</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.1</oasis:entry>  
         <oasis:entry colname="col9"/>  
         <oasis:entry colname="col10">5.7</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M374" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">3.3</oasis:entry>  
         <oasis:entry colname="col3">4.7</oasis:entry>  
         <oasis:entry colname="col4">3.3</oasis:entry>  
         <oasis:entry colname="col5">1.6</oasis:entry>  
         <oasis:entry colname="col6">4.3</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">8.4</oasis:entry>  
         <oasis:entry colname="col9">33.9</oasis:entry>  
         <oasis:entry colname="col10">3.9</oasis:entry>  
         <oasis:entry colname="col11">5.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M375" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">21.9</oasis:entry>  
         <oasis:entry colname="col3">3.8</oasis:entry>  
         <oasis:entry colname="col4">2.3</oasis:entry>  
         <oasis:entry colname="col5">2.0</oasis:entry>  
         <oasis:entry colname="col6">4.9</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.4</oasis:entry>  
         <oasis:entry colname="col9">26.3</oasis:entry>  
         <oasis:entry colname="col10">4.1</oasis:entry>  
         <oasis:entry colname="col11">6.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M376" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">24.8</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">2.1</oasis:entry>  
         <oasis:entry colname="col5">1.9</oasis:entry>  
         <oasis:entry colname="col6">4.3</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.9</oasis:entry>  
         <oasis:entry colname="col9"/>  
         <oasis:entry colname="col10">4.0</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M377" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">27.9</oasis:entry>  
         <oasis:entry colname="col3">4.3</oasis:entry>  
         <oasis:entry colname="col4">1.5</oasis:entry>  
         <oasis:entry colname="col5">1.8</oasis:entry>  
         <oasis:entry colname="col6">5.1</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">8.0</oasis:entry>  
         <oasis:entry colname="col9">68.7</oasis:entry>  
         <oasis:entry colname="col10"/>  
         <oasis:entry colname="col11">4.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M378" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">45.8</oasis:entry>  
         <oasis:entry colname="col3">2.6</oasis:entry>  
         <oasis:entry colname="col4">3.2</oasis:entry>  
         <oasis:entry colname="col5">11.0</oasis:entry>  
         <oasis:entry colname="col6">3.6</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.2</oasis:entry>  
         <oasis:entry colname="col9">36.8</oasis:entry>  
         <oasis:entry colname="col10">0.4</oasis:entry>  
         <oasis:entry colname="col11">3.5</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M379" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">49.4</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">3.0</oasis:entry>  
         <oasis:entry colname="col5">3.7</oasis:entry>  
         <oasis:entry colname="col6">4.4</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">8.9</oasis:entry>  
         <oasis:entry colname="col9"/>  
         <oasis:entry colname="col10">0.3</oasis:entry>  
         <oasis:entry colname="col11">3.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M380" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M381" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.1</oasis:entry>  
         <oasis:entry colname="col3">15.9</oasis:entry>  
         <oasis:entry colname="col4">1.1</oasis:entry>  
         <oasis:entry colname="col5">1.0</oasis:entry>  
         <oasis:entry colname="col6">3.9</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.2</oasis:entry>  
         <oasis:entry colname="col9">10.5</oasis:entry>  
         <oasis:entry colname="col10">6.5</oasis:entry>  
         <oasis:entry colname="col11">7.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M382" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M383" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>22.7</oasis:entry>  
         <oasis:entry colname="col3">13.2</oasis:entry>  
         <oasis:entry colname="col4">0.6</oasis:entry>  
         <oasis:entry colname="col5">1.0</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.1</oasis:entry>  
         <oasis:entry colname="col9">14.0</oasis:entry>  
         <oasis:entry colname="col10">7.6</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M384" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M385" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>19.7</oasis:entry>  
         <oasis:entry colname="col3">11.6</oasis:entry>  
         <oasis:entry colname="col4">0.5</oasis:entry>  
         <oasis:entry colname="col5">0.6</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.3</oasis:entry>  
         <oasis:entry colname="col9">32.8</oasis:entry>  
         <oasis:entry colname="col10">7.2</oasis:entry>  
         <oasis:entry colname="col11">6.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M386" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M387" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.5</oasis:entry>  
         <oasis:entry colname="col3">4.9</oasis:entry>  
         <oasis:entry colname="col4">1.3</oasis:entry>  
         <oasis:entry colname="col5">1.4</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8">7.3</oasis:entry>  
         <oasis:entry colname="col9">34.5</oasis:entry>  
         <oasis:entry colname="col10">3.9</oasis:entry>  
         <oasis:entry colname="col11">5.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M388" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">2.3</oasis:entry>  
         <oasis:entry colname="col3">7.6</oasis:entry>  
         <oasis:entry colname="col4">2.3</oasis:entry>  
         <oasis:entry colname="col5">55.1</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7">8.0</oasis:entry>  
         <oasis:entry colname="col8">7.3</oasis:entry>  
         <oasis:entry colname="col9">59.8</oasis:entry>  
         <oasis:entry colname="col10">1.1</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M389" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">4.3</oasis:entry>  
         <oasis:entry colname="col3">5.3</oasis:entry>  
         <oasis:entry colname="col4">2.6</oasis:entry>  
         <oasis:entry colname="col5">58.8</oasis:entry>  
         <oasis:entry colname="col6">3.4</oasis:entry>  
         <oasis:entry colname="col7">8.3</oasis:entry>  
         <oasis:entry colname="col8">7.5</oasis:entry>  
         <oasis:entry colname="col9">100.1</oasis:entry>  
         <oasis:entry colname="col10">1.3</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M390" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">23.5</oasis:entry>  
         <oasis:entry colname="col3">4.3</oasis:entry>  
         <oasis:entry colname="col4">5.3</oasis:entry>  
         <oasis:entry colname="col5">53.0</oasis:entry>  
         <oasis:entry colname="col6">3.2</oasis:entry>  
         <oasis:entry colname="col7">9.0</oasis:entry>  
         <oasis:entry colname="col8">7.4</oasis:entry>  
         <oasis:entry colname="col9">34.1</oasis:entry>  
         <oasis:entry colname="col10">1.5</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M391" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M392" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">26.2</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">6.3</oasis:entry>  
         <oasis:entry colname="col5">44.1</oasis:entry>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7">8.8</oasis:entry>  
         <oasis:entry colname="col8">7.9</oasis:entry>  
         <oasis:entry colname="col9">161.8</oasis:entry>  
         <oasis:entry colname="col10">1.0</oasis:entry>  
         <oasis:entry colname="col11"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M393" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">28.2</oasis:entry>  
         <oasis:entry colname="col3">2.9</oasis:entry>  
         <oasis:entry colname="col4">7.4</oasis:entry>  
         <oasis:entry colname="col5">48.6</oasis:entry>  
         <oasis:entry colname="col6">3.6</oasis:entry>  
         <oasis:entry colname="col7">8.7</oasis:entry>  
         <oasis:entry colname="col8">8.1</oasis:entry>  
         <oasis:entry colname="col9">115.8</oasis:entry>  
         <oasis:entry colname="col10">0.4</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M394" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M395" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF</oasis:entry>  
         <oasis:entry colname="col2">51.0</oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">10.8</oasis:entry>  
         <oasis:entry colname="col5">43.4</oasis:entry>  
         <oasis:entry colname="col6">3.1</oasis:entry>  
         <oasis:entry colname="col7">10.7</oasis:entry>  
         <oasis:entry colname="col8">8.8</oasis:entry>  
         <oasis:entry colname="col9">174.6</oasis:entry>  
         <oasis:entry colname="col10">1.4</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math id="M396" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.7</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e6160">Similar to <inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM, <inline-formula><mml:math id="M398" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY values decreased with
downstream travel in all parcels, but the magnitude of decrease was much
greater in the <inline-formula><mml:math id="M399" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels despite the fact that effluent contained
NH<inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> with a higher <inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N value than NO<inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> present
upstream of the WWTP (Fig. 3). For many samples, the difference between
<inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY was less than 1 ‰
(Fig. 4). However, <inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM values diverged from <inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY
after more than 20 h of travel past the WWTP in the <inline-formula><mml:math id="M407" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels. The largest
difference between <inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M409" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY was
<inline-formula><mml:math id="M410" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7 ‰ in the October <inline-formula><mml:math id="M411" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcel at the most downstream site
(Figs. 3, 4).</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <?xmltex \opttitle{Comparison of $\delta^{{15}}$N of POM and phytoplankton}?><title>Comparison of <inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N of POM and phytoplankton</title>
      <p id="d1e6340">C <inline-formula><mml:math id="M413" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N and C <inline-formula><mml:math id="M414" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M415" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> ratios suggest that POM in the Sacramento River
collected in October and June was primarily phytoplankton. Previous studies
in the SFE have also reported POM C <inline-formula><mml:math id="M416" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> N ratios near the Redfield ratio
(Canuel et al., 1995; Cloern et al., 2002), and in a survey of POM across the
SFE, Wienke and Cloern (1987) reported a median C <inline-formula><mml:math id="M417" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M418" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> ratio of 50
over a range of phytoplankton community composition and productivity. The
median C <inline-formula><mml:math id="M419" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M420" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> ratio of 35 observed in this study is also in
agreement with previous studies which have used a C <inline-formula><mml:math id="M421" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M422" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> ratio of 35
as a conservative estimate of the phytoplankton C <inline-formula><mml:math id="M423" display="inline"><mml:mo>:</mml:mo></mml:math></inline-formula> Chl <inline-formula><mml:math id="M424" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> ratio in the SFE
(Cloern et al., 1995; Canuel et al., 1995; Sobczak et al., 2005). Consistent
with the interpretation that POM contained primarily phytoplankton, we found
general agreement between <inline-formula><mml:math id="M425" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M426" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY,
particularly in samples that did not contain effluent. However, we also
observed a divergence between in <inline-formula><mml:math id="M427" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY and <inline-formula><mml:math id="M428" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM
values within 24 h following the addition of effluent containing high
concentrations of NH<inline-formula><mml:math id="M429" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. The slower response to a change in N sources
observed in bulk POM compared to intact phytoplankton isolated by flow
cytometry suggests that the bulk POM pool contained a significant fraction of
dead or inactive phytoplankton not actively taking up nitrogen.</p>
      <p id="d1e6485">During the October and June experiments, phytoplankton samples were collected
for quantitative enumeration and qualitative evaluation (for details see
Kraus et al., 2017a). Patterns in the phytoplankton assemblages were examined
and potential differences between the <inline-formula><mml:math id="M430" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M431" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels were tested
for significance using analysis of similarity (ANOSIM). The results of this
analysis showed no statistical difference between the assemblages present in
<inline-formula><mml:math id="M432" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and –EFF parcels in either October or June (Kraus et al., 2017a).
During both experiments it was observed that diatoms accounted for
<inline-formula><mml:math id="M433" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 90 % of the algal biovolume, and that upstream of the WWTP
colonies appeared more vibrant compared to downstream samples which contained
abundant decrepit cells and partially empty frustules (Kraus et al., 2017a).
A downstream decline in cell health, which mirrored decreasing Chl <inline-formula><mml:math id="M434" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
concentration, was observed in both <inline-formula><mml:math id="M435" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M436" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels. The
observation of declining cell health in phytoplankton may help explain how
bulk POM could contain primarily phytoplankton cells and yet also display a
different downstream trend in <inline-formula><mml:math id="M437" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values when compared to sorted
phytoplankton. Because phytoplankton cells were sorted from bulk POM based on
a ratio of cell size and Chl <inline-formula><mml:math id="M438" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> fluorescence associated with healthy and
intact cells, an increasing abundance of decrepit cells would not influence
<inline-formula><mml:math id="M439" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY, but it could dilute the contribution of live
phytoplankton to the <inline-formula><mml:math id="M440" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N value of bulk POM.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e6580"><inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M442" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, <inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M444" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, and
<inline-formula><mml:math id="M445" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in parcels that received effluent from the WWTP (<inline-formula><mml:math id="M446" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF)
in October <bold>(a)</bold> and June <bold>(b)</bold>. Samples are plotted by travel time, where zero
indicates the time the parcel passed the location where effluent high in
NH<inline-formula><mml:math id="M447" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> enters the river. The concentration of NH<inline-formula><mml:math id="M448" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> was too low
to allow for isotopic analysis upstream of the WWTP.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018-f05.pdf"/>

        </fig>

      <p id="d1e6678">It is also possible that the presence of effluent caused an increase in
heterotrophy by bacteria and zooplankton in the <inline-formula><mml:math id="M449" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels, resulting in
<inline-formula><mml:math id="M450" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM values greater than <inline-formula><mml:math id="M451" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY downstream of the
WWTP. Heterotrophic bacterial abundance was not measured during this study,
but dissolved oxygen concentration was monitored in the both parcels, and in
both October and June experiments dissolved oxygen concentrations were lower
in the parcels containing effluent (Kraus et al., 2017a). During the June
experiment, zooplankton biomass was measured in the <inline-formula><mml:math id="M452" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M453" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF
parcels, and a decrease in zooplankton biomass was observed in the <inline-formula><mml:math id="M454" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF
parcel downstream of the WWTP (Kraus et al., 2017a). Thus, while we cannot
rule out the possibility that zooplankton growth elevated <inline-formula><mml:math id="M455" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM
downstream of the WWTP in October, it is unlikely that zooplankton caused the
divergence between <inline-formula><mml:math id="M456" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M457" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in the <inline-formula><mml:math id="M458" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF
parcel in June. Temporal variability in <inline-formula><mml:math id="M459" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM also provides some
indirect evidence of bacterial reworking of bulk POM during downstream
transport. On multiple occasions in this study we observed that
<inline-formula><mml:math id="M460" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM increased overnight in both <inline-formula><mml:math id="M461" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF and <inline-formula><mml:math id="M462" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>EFF parcels.
Isotopic fractionation during remineralization by bacteria has been shown to
produce NH<inline-formula><mml:math id="M463" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M464" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 ‰ lower than its organic matter
source (Hoch et al., 1994), thus increasing the <inline-formula><mml:math id="M465" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N value of the
remaining organic matter. If N remineralization exceeded uptake under low
light conditions, it could explain observed increases in <inline-formula><mml:math id="M466" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM
at night. Remineralization of labile POM during downstream transport would
also dilute the isotopic signal of NH<inline-formula><mml:math id="M467" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> uptake by phytoplankton,
resulting in <inline-formula><mml:math id="M468" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM values greater than <inline-formula><mml:math id="M469" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY
downstream of the WWTP in the <inline-formula><mml:math id="M470" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels. This interpretation would also
be consistent with the results of a previous investigation into spatial and
temporal variability of <inline-formula><mml:math id="M471" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N of POM in the freshwater portion of
the SFE by Cloern et al. (2002). In that study, the authors reported little
overlap between <inline-formula><mml:math id="M472" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM values and the <inline-formula><mml:math id="M473" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N values of
potential organic matter sources to POM, suggesting that bacterial processing
had overprinted the isotopic composition of a significant fraction of the
organic matter sources present in bulk POM.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Quantification of phytoplankton N source</title>
      <p id="d1e6932">To trace the movement of WWTP-derived NH<inline-formula><mml:math id="M474" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> into phytoplankton
downstream of the WWTP, we employed a two-end-member mixing model approach.
The data used for mixing model calculations of phytoplankton N source using
Eq. (1) are shown in Fig. 5. Use of this approach requires knowledge of
enrichment factors for NO<inline-formula><mml:math id="M475" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M476" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and
NH<inline-formula><mml:math id="M477" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M478" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>). Enrichment factors for
phytoplankton N use have been measured in numerous laboratory and field
investigations (Cifuentes et al., 1989; Waser et al., 1998; Altabet et al.,
1999; Needoba et al., 2003; Karsh et al., 2014). While a range of values have
been reported for fractionation during assimilation, in general,
<inline-formula><mml:math id="M479" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> tends to be lower (2–7 ‰) than
<inline-formula><mml:math id="M480" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (0–25 ‰). However, enrichment factors
are known to be impacted by light, growth rate, and N concentration, and both
N-limited conditions and high growth rates have been shown to result in lower
enrichment factors (Finlay and Kendall, 2007).</p>
      <p id="d1e7032">There have been relatively few field investigations of
<inline-formula><mml:math id="M481" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> in fresh water settings. In single species
culture studies, values of <inline-formula><mml:math id="M482" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>
from &lt; 1 ‰ to as high as 20 ‰ have been reported
(Granger et al., 2004). In other coastal and estuarine field investigations
<inline-formula><mml:math id="M483" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values between 2 and 7 ‰ have been
reported (York et al., 2007, and references therein) and in a recent study in
the Danube Delta a value of 2.7 ‰ was reported based on a Rayleigh
distillation model (Möbius and Dähnke, 2015). In this study, we
estimated <inline-formula><mml:math id="M484" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> from the difference between
<inline-formula><mml:math id="M485" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M486" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M487" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in river water upstream of
the WWTP where NH<inline-formula><mml:math id="M488" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations are low and NO<inline-formula><mml:math id="M489" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is the
dominant N source. The average offset between <inline-formula><mml:math id="M490" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M491" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M492" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY in this portion of the river was 3 ‰ (<inline-formula><mml:math id="M493" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula>),
which fits within the range of previously reported values from culture and
field investigations of <inline-formula><mml:math id="M494" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> where growth was not
nutrient limited. Field investigations of <inline-formula><mml:math id="M495" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are
even less common than NO<inline-formula><mml:math id="M496" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> investigations. Values ranging from 0 to
25 ‰ have been reported from both culture and field studies (Waser
et al., 1999). In this study, the minimum value of
<inline-formula><mml:math id="M497" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> that resulted in solutions to Eq. (1) between 0
and 100 was 17 ‰ (using a <inline-formula><mml:math id="M498" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> value of
3 ‰). An enrichment factor of 17 ‰ is relatively high
compared to other studies; however, previous investigations of
<inline-formula><mml:math id="M499" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> focused on nutrient-limited conditions. Elevated
NH<inline-formula><mml:math id="M500" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations in this study may help explain the large apparent
enrichment factor.</p>
      <p id="d1e7301">The percentage of the phytoplankton N pool that was derived from NH<inline-formula><mml:math id="M501" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
(%NH<inline-formula><mml:math id="M502" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) versus NO<inline-formula><mml:math id="M503" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> calculated using values of
<inline-formula><mml:math id="M504" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> ranging from 17 ‰ (the minimum value
required for valid solutions to the model) to 25 ‰ (highest reported
value) illustrates that model solutions become increasingly sensitive to
<inline-formula><mml:math id="M505" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> as <inline-formula><mml:math id="M506" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY decreases downstream.
Nevertheless, despite the uncertainty in enrichment factors, a gradual
increase in the percentage of N derived from NH<inline-formula><mml:math id="M507" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is apparent
(Fig. 6). In the October <inline-formula><mml:math id="M508" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcel the
estimated portion of phytoplankton N derived from NH<inline-formula><mml:math id="M509" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> increased to
50 % over 60 h of travel time and may have reached as high as 88 %
after 80 h. Similar patterns were observed between the October and June
samplings. However, mixing model calculations were only completed at three
locations in June because <inline-formula><mml:math id="M510" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY was greater than
<inline-formula><mml:math id="M511" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M512" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M513" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M514" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> at the top of the
study reach (discussed below).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p id="d1e7470">Modeled percentage of phytoplankton N sourced form NH<inline-formula><mml:math id="M515" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
(%NH<inline-formula><mml:math id="M516" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) versus travel time past the wastewater treatment plant in the
October parcel that received effluent (<inline-formula><mml:math id="M517" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF). Calculations were made using
an enrichment factor for NO<inline-formula><mml:math id="M518" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> of 3 ‰, and three different
enrichment factors for NH<inline-formula><mml:math id="M519" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (17, 20, and 25 ‰). Error
bars indicate propagated error from the <inline-formula><mml:math id="M520" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.8 ‰ uncertainty
in <inline-formula><mml:math id="M521" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY values. See text for details.</p></caption>
          <?xmltex \igopts{width=193.47874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/353/2018/bg-15-353-2018-f06.pdf"/>

        </fig>

      <p id="d1e7551">Mixing model calculations suggest that downstream of the WWTP, a significant
portion of the phytoplankton N pool was derived from NO<inline-formula><mml:math id="M522" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> despite the
presence of high concentrations of NH<inline-formula><mml:math id="M523" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. However, N uptake
experiments conducted using <inline-formula><mml:math id="M524" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-tracer incubation techniques as part of
this effluent hold study indicate a near immediate switch from NO<inline-formula><mml:math id="M525" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
uptake to NH<inline-formula><mml:math id="M526" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> uptake when NH<inline-formula><mml:math id="M527" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations were elevated
in this portion of the river (Travis, 2015; Kraus et al., 2017a). The
apparently gradual increase over time in the proportion of <inline-formula><mml:math id="M528" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY
derived from NH<inline-formula><mml:math id="M529" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> suggests either that simultaneous uptake of
NO<inline-formula><mml:math id="M530" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M531" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> occurs in the river under conditions not
captured by the <inline-formula><mml:math id="M532" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-tracer incubations, or that the N turnover time of
phytoplankton is much longer than the <inline-formula><mml:math id="M533" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 h travel time covered in
this study.</p>
      <p id="d1e7688">We can estimate potential N turnover time as the mean concentration of POM-N
(<inline-formula><mml:math id="M534" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M) divided by the mean rate of N uptake (<inline-formula><mml:math id="M535" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M d<inline-formula><mml:math id="M536" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)
measured downstream of the WWTP during 24 h <inline-formula><mml:math id="M537" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-tracer experiments.
This estimate assumes that all POM-N comes from phytoplankton and it
represents a minimum turnover time because it is based on potential N uptake
rates measured under high light conditions, in bottles where phytoplankton
are isolated from the impacts of turbulence and mixing which may transport
cells into lower light environments. In the October <inline-formula><mml:math id="M538" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcel, the
concentration of particulate N (mean <inline-formula><mml:math id="M539" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> standard deviation) downstream
of the WWTP was 4.0 <inline-formula><mml:math id="M540" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.0 <inline-formula><mml:math id="M541" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, while the potential
NH<inline-formula><mml:math id="M542" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> uptake rate was 1.4 <inline-formula><mml:math id="M543" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.6 <inline-formula><mml:math id="M544" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M d<inline-formula><mml:math id="M545" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(mean <inline-formula><mml:math id="M546" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> standard deviation; Travis, 2015). This implies that it would
take <inline-formula><mml:math id="M547" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 66 h to completely turnover phytoplankton N with newly
assimilated NH<inline-formula><mml:math id="M548" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> if phytoplankton switched to 100 % NH<inline-formula><mml:math id="M549" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
uptake. After 60 h of travel time in the presence of elevated NH<inline-formula><mml:math id="M550" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
concentrations, mixing model calculations indicate that only <inline-formula><mml:math id="M551" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 %
of the phytoplankton N was derived from NH<inline-formula><mml:math id="M552" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, suggesting NH<inline-formula><mml:math id="M553" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
uptake rates in the river are much lower than the potential growth rates
measured in <inline-formula><mml:math id="M554" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N uptake experiments. Given that phytoplankton in the
river likely experienced light limitation, it is reasonable to infer that
lower in situ growth rates resulted in an N turnover time greater than 80 h.
Because <inline-formula><mml:math id="M555" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY reflects a time-integrated mixture of N uptake, an
N turnover time &gt; 80 h would mute changes in <inline-formula><mml:math id="M556" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY
following an abrupt switch to NH<inline-formula><mml:math id="M557" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> uptake.</p>
      <p id="d1e7920">While there is a general consensus that phytoplankton preferentially take up
NH<inline-formula><mml:math id="M558" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> when NH<inline-formula><mml:math id="M559" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations are elevated (for reviews see
Dortch, 1990; Glibert et al., 2016), simultaneous uptake of NO<inline-formula><mml:math id="M560" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
NH<inline-formula><mml:math id="M561" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> has been documented in several field studies. For example, Berg
et al. (2001) report nearly equal percentages of NO<inline-formula><mml:math id="M562" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
NH<inline-formula><mml:math id="M563" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> uptake with a small percentage of N uptake as urea for the
spring bloom diatom <italic>Thalassiosira baltica</italic>. Likewise, Twomey et
al. (2005) report near parity of uptake of N as NO<inline-formula><mml:math id="M564" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M565" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
for the phytoplankton community in the Neuse River estuary. Both field- and
laboratory-based studies make it clear that different cells respond
differently to the presence of multiple N sources (Dortch, 1990). Diatoms,
for example, can reach maximum growth rates when using both NO<inline-formula><mml:math id="M566" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
NH<inline-formula><mml:math id="M567" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, whereas cyanobacteria appear to be NH<inline-formula><mml:math id="M568" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> specialists
(Senn and Novick, 2014, and references therein). During this study, diatoms
were the most abundant type of algae, which would be consistent with
simultaneous use of NO<inline-formula><mml:math id="M569" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M570" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. However, <inline-formula><mml:math id="M571" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-tracer
uptake measurements made during 24 h bottle incubations in this section of
the Sacramento River have consistently found that <inline-formula><mml:math id="M572" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M573" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> uptake
rates are near zero when NH<inline-formula><mml:math id="M574" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations are elevated (Parker et
al., 2012a; Kraus et al., 2017a) meaning that if simultaneous uptake of
NO<inline-formula><mml:math id="M575" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M576" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> occurred in the river it would appear to
require conditions (such as light limitation) not captured in these
incubations.</p>
      <p id="d1e8148">Another possible explanation for the observed gradual increase in the
%NH<inline-formula><mml:math id="M577" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> making up the phytoplankton N pool in the <inline-formula><mml:math id="M578" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>EFF parcels is that
<inline-formula><mml:math id="M579" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY represents a mixture of phytoplankton actively taking up
NH<inline-formula><mml:math id="M580" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (as observed in bottle incubations) and phytoplankton subsisting
on an internal supply of NO<inline-formula><mml:math id="M581" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> acquired upstream of the WWTP. Previous
investigations have shown that diatoms are capable of accumulating an
internal DIN pool under both N-sufficient and N-deficient conditions and that
DIN accumulation is impacted by prior conditioning of the cells (Dortch,
1982; Collos, 1982; Lomas and Glibert, 2000). During the June transect
<inline-formula><mml:math id="M582" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY was greater than <inline-formula><mml:math id="M583" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M584" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> at the top of the
study reach and remained greater than both <inline-formula><mml:math id="M585" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M586" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M587" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M588" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> for &gt; 40 h of downstream transport.
Because <inline-formula><mml:math id="M589" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY should be equal to or lower than the
<inline-formula><mml:math id="M590" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N value of its source N, it appears that during the June
experiment phytoplankton N was acquired above the study reach. A similar
observation was made in the Childs River of Massachusetts, where
phytoplankton maintained a stable <inline-formula><mml:math id="M591" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N value over several days of
downstream transport while both <inline-formula><mml:math id="M592" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M593" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M594" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M595" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> decreased, leading York et al. (2007) to infer that
phytoplankton growth was sustained by internal N stores. If a portion of the
phytoplankton community acquired N upstream of the study reach and then was
advected downstream without taking up additional N, this could account for the
20 % apparent contribution of NO<inline-formula><mml:math id="M596" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M597" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY after
80 h of transport.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p id="d1e8393">Monitoring the spatial influence and biological uptake of anthropogenic
nutrient loading in aquatic ecosystems is a pressing resource management
challenge. Natural abundance stable isotope approaches have the potential to
help regional monitoring programs with this challenge if applied in
well-characterized systems. In this study, we took advantage of a river-scale
nutrient manipulation experiment to test the use of flow cytometry to isolate
phytoplankton from bulk POM prior to isotopic analysis. Comparison of
<inline-formula><mml:math id="M598" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM and <inline-formula><mml:math id="M599" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY revealed that POM and phytoplankton
share similar downstream trends in the Sacramento River, suggesting that POM
(which is relatively easy to collect and analyze) may be a useful proxy for
phytoplankton under certain conditions. However, where phytoplankton growth
rates are low, or N sources change abruptly, <inline-formula><mml:math id="M600" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM may not
reflect localized changes in <inline-formula><mml:math id="M601" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY, which could lead to
inaccurate interpretation of the relative importance of different N sources
if not carefully considered.</p>
      <p id="d1e8440">Isolating phytoplankton allowed for the use of a mixing model approach to
trace the movement of WWTP NH<inline-formula><mml:math id="M602" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> into the phytoplankton N pool. We
found that even in the presence of high concentrations of NH<inline-formula><mml:math id="M603" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math id="M604" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N uptake experiments suggest preferential uptake of NH<inline-formula><mml:math id="M605" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
little to no NO<inline-formula><mml:math id="M606" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> uptake, a large portion of phytoplankton N
(10–60 %) was derived from NO<inline-formula><mml:math id="M607" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> following several days of
downstream transport (Fig. 6). Differences observed between the natural
abundance and <inline-formula><mml:math id="M608" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula>N-labeled approaches highlight the strengths and
weaknesses of both methods. The strength of the natural abundance approach is
that it allows in situ observation, thus avoiding the potential artifacts
associated with altered conditions such as increased light availability and a
lack of turbulence and grazing that may impact phytoplankton populations in
bottle incubations. A significant drawback of the natural abundance approach
is that it integrates all N use up to the point of sampling, thus potentially
complicating interpretation of short-term (<inline-formula><mml:math id="M609" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 24 h) changes in N
sources. When the results of both approaches are considered together, it
appears that in situ growth rates were much lower in the river than observed
in bottle incubations, leading to a slow turnover of phytoplankton N and a
gradual change in <inline-formula><mml:math id="M610" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY.</p>
      <p id="d1e8540">Results of this study indicate that flow cytometry coupled with natural
abundance stable isotope techniques can provide valuable insight into how
different nutrient sources enter the food web. Obtaining pure phytoplankton
samples in the presence and absence of effluent allowed us to determine that
the presence of WWTP effluent containing NH<inline-formula><mml:math id="M611" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> with a distinctly high
<inline-formula><mml:math id="M612" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N value resulted in a decrease in <inline-formula><mml:math id="M613" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY values due
to large enrichment factors in this nutrient replete setting. One implication
of this finding is that planned upgrades to the Sacramento River WWTP
(including nitrification and denitrification), which will reduce NH<inline-formula><mml:math id="M614" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
inputs to the SFE by 2021, may actually result in an increase in
<inline-formula><mml:math id="M615" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY. This increase may subsequently be transferred up the food
chain. Results from this study provide an important baseline for future
stable isotope investigations of nutrient flow in the SFE following WWTP
upgrades.</p>
      <p id="d1e8600">While flow cytometry allowed for determination of <inline-formula><mml:math id="M616" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY separate
from bulk POM, we did encounter challenges in applying this approach in a
riverine setting which warrant further exploration and method development.
Unfortunately, due to abundant sediment as well as fragile phytoplankton
cells, we were not able to complete isotopic analysis of distinct
phytoplankton populations within bulk POM. The limitation was not sample
size, but rather the time required to sort sufficient material before the
sample degraded. Future investigations could avoid this issue by combining
sorted samples collected over several days or weeks. This approach would
reduce temporal resolution, but this reduction may actually be appropriate
given that low phytoplankton growth rates observed in this study complicated
interpretation of changes in <inline-formula><mml:math id="M617" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-PHY over shorter timescales.</p>
      <p id="d1e8626">Additional research is needed to establish sampling strategies that allow for
sorting of different populations of phytoplankton (such as diatoms) or
bacteria from bulk POM. For example, isotopic data collected in this study,
particularly downstream trends in <inline-formula><mml:math id="M618" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NH<inline-formula><mml:math id="M619" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M620" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-NO<inline-formula><mml:math id="M621" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> as well as the daily temporal variations in
<inline-formula><mml:math id="M622" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>N-POM, suggest that additional N cycling processes such as
nitrification and remineralization influence N source availability for
phytoplankton. If future studies focused on sorting unique populations of
bacteria and phytoplankton, it would be possible to isotopically trace the
pathways by which N becomes available to phytoplankton. This could greatly
improve our understanding of natural and anthropogenic cycling of N in
aquatic systems.</p><?xmltex \hack{\newpage}?>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e8691">The data is available at:
<?xmltex \hack{\newline}?><ext-link xlink:href="https://doi.org/10.15867/envs38" ext-link-type="DOI">10.15867/envs38</ext-link>.</p>
  </notes><notes notes-type="authorcontribution">

      <p id="d1e8701">CS wrote proposals, participated in field sample collection, and was
responsible for flow cytometry and stable isotope analyses at UCSC. TK wrote
proposals, designed and managed field experiments, led data compilation and
participated in data interpretation. MY completed stable isotope analysis at
the USGS and participated in data interpretation. CK wrote proposals and
participated in data interpretation. CS prepared the manuscript with
contributions from all co-authors.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e8707">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e8713">Special thanks to numerous staff at the USGS California Water Science Center
for orchestrating and conducting the Lagrangian sampling campaigns,
particularly Brian Bergamaschi, Bryan Downing, Elizabeth Stumpner, and Katy
O'Donnell. Also special thanks to Alex Parker, Nicole Travis, Frances
Wilkerson and the RTC lab staff who analyzed samples for nutrients,
chlorophyll, and C and N uptake. We are also grateful for the help of Matt
Richter in the field and Dyke Andreason and Brandon Carter for their
analytical support at UC Santa Cruz. Thank you to Kurt Carpenter and Joe
Fackrell for providing useful comments on an earlier draft. Lastly we are
grateful for the comments of two anonymous reviewers.</p><p id="d1e8715">Support for this work was provided by Sacramento County Regional Sanitation
District (grant no. 13WSCA600000947/90000080), the Interagency Ecological
Program for the San Francisco Estuary (grant no.
13WSCA4600010038/4600010038), and California Sea Grant (grant no. DelSci
U-04-SC-005).</p><p id="d1e8717">Any use of trade, firm, or product names is for descriptive purposes only and
does not imply endorsement by the US Geological Survey.<?xmltex \hack{\\\\}?> Edited by:
Steven Bouillon<?xmltex \hack{\\}?> Reviewed by: two anonymous referees</p></ack><ref-list>
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<abstract-html><p class="p">Anthropogenic alteration of the form and concentration of nitrogen (N) in
aquatic ecosystems is widespread. Understanding availability and uptake of
different N sources at the base of aquatic food webs is critical to
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<i>δ</i><sup>15</sup>N values followed broadly similar trends. However, after 3 days
of downstream travel in the presence of wastewater treatment plant (WWTP)
effluent, <i>δ</i><sup>15</sup>N-POM and <i>δ</i><sup>15</sup>N-PHY in the Sacramento River
differed by as much as 7 ‰. Using a stable isotope mixing model
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90 % of phytoplankton N was derived from NH<sub>4</sub><sup>+</sup> after 3 days of
downstream transport. An apparent gradual increase over time in the
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exceeded the travel time sampled during this study, or a portion of the
phytoplankton community continued to access nitrate even in the presence of
elevated NH<sub>4</sub><sup>+</sup> concentrations.</p></abstract-html>
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