<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-15-7315-2018</article-id><title-group><article-title>Turbulence measurements suggest high rates of new production over the shelf
edge in the northeastern North Sea during summer</article-title><alt-title>Turbulence measurements suggest high rates of new production</alt-title>
      </title-group><?xmltex \runningtitle{Turbulence measurements suggest high rates of new production}?><?xmltex \runningauthor{J. Bendtsen and K. Richardson}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Bendtsen</surname><given-names>Jørgen</given-names></name>
          <email>jb@climatelab.dk</email>
        <ext-link>https://orcid.org/0000-0003-1393-3072</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Richardson</surname><given-names>Katherine</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>ClimateLab, Symbion Science Park, Copenhagen, 2100 O, Denmark</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Center for Macroecology, Evolution and Climate, Natural History Museum
of Denmark, University of Copenhagen, Copenhagen, 2100 O, Denmark</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jørgen Bendtsen (jb@climatelab.dk)</corresp></author-notes><pub-date><day>10</day><month>December</month><year>2018</year></pub-date>
      
      <volume>15</volume>
      <issue>23</issue>
      <fpage>7315</fpage><lpage>7332</lpage>
      <history>
        <date date-type="received"><day>22</day><month>August</month><year>2018</year></date>
           <date date-type="rev-request"><day>7</day><month>September</month><year>2018</year></date>
           <date date-type="rev-recd"><day>24</day><month>November</month><year>2018</year></date>
           <date date-type="accepted"><day>27</day><month>November</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018.html">This article is available from https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018.pdf</self-uri>
      <abstract>
    <p id="d1e95">New production, i.e. that driven by allochthonous nutrient inputs, is the
only form of primary production that can lead to net increases in organic
material and is, therefore, important for understanding energy flow in marine
ecosystems. The spatial distribution of new production is generally, however,
not well known. Using data collected in July 2016, we analyse the potential
for vertical mixing to support new production in the upper layers of the
northeastern portion of the North Sea. Relatively large (up to <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> mmol N m<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) nitrate fluxes due to turbulent vertical
mixing into the euphotic zone were found at some stations over the shelf
edge, while low values (<inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> mmol N m<inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M6" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) were found in
the deeper open area north of the shelf edge. The low vertical mixing rates
(dissipation rates of turbulent kinetic energy below 10<inline-formula><mml:math id="M7" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
corresponding to vertical turbulent diffusion coefficients of
10<inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>–10<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M11" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) implied <inline-formula><mml:math id="M13" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>
ratios of <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> in the open waters
north of the shelf edge. In the shallow (<inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> m) southern and central part
of the study area, inorganic nutrients were low and nitrate undetectable,
suggesting negligible new production here, despite relatively high
concentrations of chlorophyll <inline-formula><mml:math id="M16" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> being found in the bottom layer. Thus, high
rates of new production seem to be concentrated around the shelf-edge zone
and in association with localized features exhibiting enhanced vertical
mixing. We find that the nutricline depth is significantly deeper at the
shelf edge and interference with increased mixing in this deeper depth range
can explain the increased diapycnal nitrate fluxes. Overall, this suggests
that the shelf-edge zone may be the major nutrient supplier to the euphotic
zone in this area during the period of summer stratification.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e281">New production (NP), i.e. primary production (PP) based on inorganic
nutrients recently introduced to a system, balances net losses of organic
material in the euphotic layer when considered over longer periods (Dugdale
and Goering, 1967). Net loss of biomass from the surface layer may be due to
sinking phytoplankton or transfer to, and subsequent losses from, higher
trophic levels such that this cycle between nutrient input, PP, and
remineralization of organic matter constitutes an organic biological pump in
the upper ocean (Volk and Hoffert, 1985). In addition to NP, total PP is
comprised of photosynthesis driven by nutrients recycled within the system
itself. The ratio of NP to total PP is referred to as the <inline-formula><mml:math id="M17" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratio (Eppley
and Peterson, 1979). This ratio is known to vary both seasonally and
spatially.</p>
      <p id="d1e291">Given that NP can lead to a net increase in organic material, its occurrence
can be expected to have important consequences for food webs and the
distribution of marine organisms. Scott et al. (2010) analysed the
distribution of marine mammals and seabirds in the northwestern North Sea, and
they found the distribution of these organisms to be best explained by the
presence of a subsurface chlorophyll maximum (SCM). They furthermore
speculated that bathymetric features induced vertical mixing that could bring
nutrients to depths containing the chlorophyll peak, which then could lead to
localized NP. This potential link between localized increased NP in
subsurface layers and the highest trophic levels may, therefore, be an
important feature in ecosystem functioning. The distribution of NP,
especially over small spatial scales, is however not well understood. The
purpose of this study, therefore, was to describe the potential for NP<?pagebreak page7316?> based
on the vertical mixing of nutrients into the euphotic zone to occur in the
northeastern North Sea, a highly productive temperate ocean region. The
summer season was chosen for the study as this region is thermally stratified
at this time and surface waters characterized by low or undetectable
concentrations of inorganic nutrients and low phytoplankton biomass. Thus, it
is generally assumed that little NP is occurring in these waters at this
time.</p>
      <p id="d1e294">The northeastern North Sea is characterized by the transition from a
relatively shallow southern region (depth <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m) across a shelf edge
(depth <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula>–130 m) towards the deep (<inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">400</mml:mn></mml:mrow></mml:math></inline-formula> m) Norwegian Trench
leading into Skagerrak (Fig. 1). The general cyclonic circulation is
characterized by inflow from the Atlantic along the shelf edge, either from
mainly wind-driven inflow between the Shetland and Orkney islands or from
transports along the Norwegian Trench (Winther and Johannessen, 2006).
Outflow takes place along the Norwegian coast, partly as less saline water
masses in the Norwegian Coastal Current, and with an estimated net transport
of about 1 Sv (sverdrup unit) in either direction
(Danielssen et al., 1990). The relatively large cyclonic flow has also been
found in model studies (Winther and Johannessen, 2006; Pätsch et al.,
2017) where current speeds along the northeastern shelf edge towards the
Skagerrak intensify (Holt and Proctor, 2008) and are found to be associated
with a large eddy activity (Røed and Fossum, 2004). This dynamic area was
chosen as the study area as it is a potential location for increased vertical
mixing and nutrient transport due to, for example, eddy activity, breaking
internal waves, and upwelling at the shelf edge.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e329">VERMIX station map of the five transects in the northeastern North
Sea overlaid on <bold>(a)</bold> surface chlorophyll <inline-formula><mml:math id="M21" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (mg chl m<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and
<bold>(b)</bold> sea surface temperature (<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> C) from MODIS satellite
images (4 km resolution) obtained on 20 July 2016 (clouds are shown in dark
grey). <bold>(a)</bold> CTD stations (bullets) and stations where <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>
incubations for primary production were used for estimating photosynthetic
parameters in the area (white circles) along the five transects (Tr1–5).
Horizontal yellow bars (Tr2–5) show the separation between nitrate-deplete
and nitrate-replete areas. Water masses in the area are indicated (see text).
Bathymetry is contoured in metres.</p></caption>
        <?xmltex \igopts{width=213.395669pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f01.jpg"/>

      </fig>

      <p id="d1e389">A large part of the central and northern North Sea becomes stratified during
the summer season with an SCM between <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> and 40 m depth. Richardson et
al. (2000) found that a significant amount of PP occurs at the SCM and argued
that much of this could be NP supported by fortnightly tidally driven input
of nutrient-rich deep water to the SCM. Fernand et al. (2013) found that up
to 60 % of PP took place in the SCM in the central and northern North Sea
during the summer. Those researchers also reported a distinct SCM in the northern
North Sea where the depth was larger than <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m, i.e. areas where
tidally induced mixing cannot break the stratified water column. The northern
North Sea is relatively productive during the summer season with PP levels of
<inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula>–0.9 g C m<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M29" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Weston et al., 2005; Fernand et
al., 2013). However, few studies have been made of PP at the northern
shelf edge and the distribution of NP is unknown.</p>
      <p id="d1e446">Shelf areas, in general, constitute an important link between the large
reservoirs of dissolved substances in the open ocean, and coastal water masses
and shelf processes play an important role in global cycles of nutrients,
oxygen, and carbon (Gattuso et al., 1998). Transport across the shelf edge
brings nutrient-rich deep-water masses into more shallow and well-mixed areas
and stimulates production above the shelf. Various cross-shelf transport
processes can facilitate this exchange (Brink, 2012); thus, different exchange
processes may dominate in different shelf-edge regions. However, shelf-edge
areas share common dynamical features due to their relatively steep
bathymetric slopes and the separation between coastal and open-ocean water
masses. Therefore, the conditions in the northeastern North Sea may be
representative of similar shelf-edge regions not directly exposed to the
open-ocean basins.</p>
      <p id="d1e449">Here, we analyse the physical and biological processes affecting PP and NP
during the stratified summer period across the shelf edge in the northeastern
North Sea based on data<?pagebreak page7317?> collected during the VERMIX cruise in July 2016.
First, we describe the distribution of water masses, nutrients, and vertical
mixing in the area. Then, we present results from PP incubations and, based
on averaged representative photosynthetic parameters, calculate PP for the
whole study area. Nitrate fluxes and NP are calculated and compared with PP
to derive <inline-formula><mml:math id="M30" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios. Finally, the implications for NP in the North Sea are
discussed.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Study area and hydrographic measurements</title>
      <p id="d1e470">The VERMIX study covered an area around the shelf edge in the northeastern
North Sea from the shallow shelf area (depth <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> m) across the western
part of the Norwegian trench (<inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> m) towards the coast of Norway
(Fig. 1a). In this study, we define the shelf-edge zone as being where depths
are between 80 and 130 m and refer to areas south and north of this zone as
the shallow shelf area (<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> m) and the area off the shelf-edge zone (<inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">130</mml:mn></mml:mrow></mml:math></inline-formula> m), towards Norway, respectively.</p>
      <p id="d1e513">The cruise was carried out on board R/V <italic>Dana</italic> (Technical University
of Denmark) during the period 12–31 July 2016. Stations were placed along
five transects between 56.2 and 57.8<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and along 8.25<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E
(Tr1), 7.75<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E (Tr2), 7.25<inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E (Tr3), 6.75<inline-formula><mml:math id="M39" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E
(Tr4), and 6.25<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E (Tr5) (i.e. <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> km between transects).
Wind and light conditions were typical for the period, with windy conditions
during the first week (along Tr1 and Tr2 with wind speeds up to
20 m s<inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and relatively calm conditions during the rest of the cruise
(Tr2–5). In total, 132 stations were sampled along the transects with a
general distance between stations of 10 km, and at sections along Tr2 and
Tr4 this distance was decreased down to <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> km. Measurements along
these two transects were made several times during the cruise to examine
temporal variability. Measurements over 22–36 h were made at two time
series stations (T1, T2) located at Tr2 and Tr4, respectively. Hydrographic
measurements of conductivity, temperature, and depth (CTD) were made with a
Seabird SBE911 plus system, including two sets of temperature, conductivity,
and oxygen sensors (SBE43) and equipped with a SCUFA (self-contained underwater fluorescence apparatus) fluorometer, a
photosynthetically available radiation (PAR) sensor (Licor), and 12 Niskin
bottles (30 L) for water sampling. All salinity values are reported as
practical salinity (<inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">P</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and referred to as salinity (<inline-formula><mml:math id="M45" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>), and
TEOS-10 (Thermodynamic Equation of SeaWater 2010)
(IOC et al., 2010) was applied for calculating properties of seawater.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Measurements of turbulence and microstructure</title>
      <p id="d1e631">Micro-scale turbulence was measured with a loose-tethered free-fall Rockland
Scientific International (RSI) VMP-250 microstructure vertical profiler
equipped with two shear probes: a FP07 thermistor and a micro-conductivity
sensor. The microstructure of temperature and salinity only supported the
analysis of shear-induced turbulence and is not discussed further here. The
profiler was also equipped with a CT (conductivity and temperature) and pressure sensor (JFE
Advantech). The JFE CTD data were binned in 0.1 dbar, and the conductivity
sensor was aligned with temperature by a delay of 0.14 s. Microstructure
measurements were made at 512 Hz and stored at 64 Hz, and the CT sensor
operated at 16 Hz. Turbulence profiles were obtained while the ship was
freely drifting. In total, 253 casts down to about 5 m from the bottom, or
to a maximum depth of 200 m above deeper areas, were made during the cruise.
Every cast provided two shear measurements and the dissipation rate
(<inline-formula><mml:math id="M46" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula>) of turbulent kinetic energy (TKE) was calculated with
software provided by Rockland Scientific. The dissipation of TKE was
estimated from below 10 m depth in order to exclude possible disturbances
from the ship (depth of ship was 5.7 m), and it was analysed in bins of 8 s
with 50 % overlap, corresponding to a resolution of <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> m,
following the method described by Wolk et al. (2002) and revised by
Lueck (2016).</p>
      <p id="d1e651">The uncertainty and short-term temporal variability in the calculated
<inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> values were assessed from a time series station (T1) at Tr2
where <inline-formula><mml:math id="M49" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> values were calculated from 107 casts carried out in
three sequences over a 22 h period (Supplement). In general, there was good
accordance between estimates of <inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> obtained from the two sensors
and the error-distribution, defined from the difference of the logarithm (to
the base 10 and in units of W kg<inline-formula><mml:math id="M51" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) between the two estimates, had an
absolute standard deviation of 0.14 (Fig. S1 in the Supplement). In order for
measurements to be included in the analysis, we applied the criterion that
the difference between the measurements made by the two sensors on a single
profile should be less than 3 times the absolute deviation. This only led to
the removal of a few pairs of <inline-formula><mml:math id="M52" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> from the data set. Short-term
variation at T1 was also found to be relatively small and temporal changes
between subsequent casts were considered to have little influence
on the calculated <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> values (time series analysis in Supplement).
Therefore, <inline-formula><mml:math id="M54" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> values were, in general, derived from a single cast
between the relatively closely spaced stations, and the <inline-formula><mml:math id="M55" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> value
obtained by averaging the calculated value from the two shear probes was
reported.</p>
      <?pagebreak page7318?><p id="d1e716">The vertical turbulent diffusion coefficient (<inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) was estimated
from the dissipation rate of TKE (Osborn, 1980):
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M57" display="block"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ε</mml:mi><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          with a mixing efficiency (<inline-formula><mml:math id="M58" display="inline"><mml:mi mathvariant="normal">Γ</mml:mi></mml:math></inline-formula>) and the Brunt–Väisälä
frequency (<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) determined by linear regression of density (<inline-formula><mml:math id="M60" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>) with
depth at 10 m intervals:
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M61" display="block"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>g</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is a reference density (1027 kg m<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and <inline-formula><mml:math id="M64" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> is the
gravitational acceleration.</p>
      <p id="d1e852">The mixing efficiency, <inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="normal">Γ</mml:mi></mml:math></inline-formula>, is here assumed to be constant and equal to 0.2, and this is within the range of <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">0.20</mml:mn></mml:mrow></mml:math></inline-formula> suggested by Osborn (1980).
The value of 0.2 is supported by numerical studies when the turbulent
intensity, defined by <inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mtext mathvariant="italic">Re</mml:mtext><mml:mi>b</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">ν</mml:mi><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> where <inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> is the molecular viscosity, is within the range 7–100 (Shih et al., 2005),
and the model by Bouffard and Boegman (2013), also validated against field
data, finds the valid range to be between 20 and 400. Outside this mixing
regime, the mixing efficiency is less than 0.2. We apply the range of
Bouffard et al. (2013), and this implies that our calculated diffusion
coefficients with a constant mixing efficiency of 0.2 are valid in the range
between <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.0</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M71" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (we use
<inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M74" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M75" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). This range encompasses the
data used for calculating vertical nitrate fluxes in the euphotic zone in our
study.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <?xmltex \opttitle{Measurements of nutrients and chlorophyll $a$}?><title>Measurements of nutrients and chlorophyll <inline-formula><mml:math id="M76" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></title>
      <p id="d1e1023">Water samples were taken at CTD stations from standard depths (5, 10, 30, 40,
60, 100, and 200 m and close to the bottom). In addition, a sample from the
depth (i.e. peak) of the SCM was
sampled. At some stations, a distinct second chlorophyll peak or “extreme”
(i.e. a subsurface chlorophyll <inline-formula><mml:math id="M77" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> extremum, SCE) was observed above the SCM.
In some cases, water for photosynthesis incubations and inorganic nutrient
(nitrate, nitrite, ammonia, phosphorous, and silicate) determination was taken
from these SCEs. However, in this study we refer only to subsurface samples
from the SCM. Water samples for nutrient determination were tapped from the
Niskin bottles and immediately frozen. The sample was subsequently thawed,
filtered (Milipore Millex-GP Hydrophylic PES 0.22 <inline-formula><mml:math id="M78" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m), and analysed
for nitrite, nitrate, ammonia, phosphorous, and silica by wet-chemistry
methods according to Grasshoff et al. (1983) (detection limits were 0.04,
0.1, 0.3, 0.06, and 0.2 <inline-formula><mml:math id="M79" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>M, respectively) at Aarhus University,
Department of Bioscience. In total 649 water samples were analysed for
nutrients.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e1050">Distribution of photosynthetic parameters. Median values and
absolute median deviations (number of samples <inline-formula><mml:math id="M80" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> in parenthesis) of
photosynthetic parameters at 5 m below the surface and at the SCM.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.88}[.88]?><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Depth</oasis:entry>
         <oasis:entry colname="col2">Depth</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8">Chl <inline-formula><mml:math id="M86" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">level</oasis:entry>
         <oasis:entry colname="col2">(m)</oasis:entry>
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M87" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C (<inline-formula><mml:math id="M88" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h)<inline-formula><mml:math id="M89" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M90" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C (<inline-formula><mml:math id="M91" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h)<inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M94" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C (<inline-formula><mml:math id="M95" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M97" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C (<inline-formula><mml:math id="M98" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h</oasis:entry>
         <oasis:entry colname="col7">(<inline-formula><mml:math id="M99" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col8">(mg chl m<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M103" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M104" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M105" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M107" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M109" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)<inline-formula><mml:math id="M110" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Surface</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.0</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.0</mml:mn></mml:mrow></mml:math></inline-formula> (23)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mn mathvariant="normal">4.76</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.33</mml:mn></mml:mrow></mml:math></inline-formula> (19)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.48</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.87</mml:mn></mml:mrow></mml:math></inline-formula> (23)</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:mn mathvariant="normal">4.10</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.90</mml:mn></mml:mrow></mml:math></inline-formula> (23)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.70</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.70</mml:mn></mml:mrow></mml:math></inline-formula> (23)</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mn mathvariant="normal">413</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">76</mml:mn></mml:mrow></mml:math></inline-formula> (19)</oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.16</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.06</mml:mn></mml:mrow></mml:math></inline-formula> (23)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SCM</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:mn mathvariant="normal">27.0</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">5.0</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.72</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.38</mml:mn></mml:mrow></mml:math></inline-formula> (24)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.33</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.64</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.70</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.80</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.00</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.90</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:mn mathvariant="normal">192</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">26</mml:mn></mml:mrow></mml:math></inline-formula> (24)</oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.67</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.73</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <p id="d1e1667">Chlorophyll <inline-formula><mml:math id="M125" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (GF/F filtered and extracted in 90 % ethanol) was
determined fluorometrically (Trilogy, Turner Designs) and used to calibrate
the rosette-mounted fluorometer (chlorophyll <inline-formula><mml:math id="M126" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> is simply referred to as
chlorophyll below). A relatively constant background fluorescence was
measured in the deep profiles (<inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> m). As we see no reason for a
constant distribution of chlorophyll in waters down to depths of <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> m, we considered this fluorescence to be generated by material other
than chlorophyll. Therefore, the fluorescence was averaged between 100 and
500 m at a deep station on Tr1 (57.83<inline-formula><mml:math id="M129" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, average value of
0.023 V). This relatively small value was treated as an unknown background
and subtracted from the fluorescence signal (<inline-formula><mml:math id="M130" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula>). The chlorophyll
concentration (chl, mg chl m<inline-formula><mml:math id="M131" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) was then determined from a linear
regression between fluorescence (<inline-formula><mml:math id="M132" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula>) and filtered chlorophyll samples as
chl <inline-formula><mml:math id="M133" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.23</mml:mn><mml:mi>F</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.71</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">205</mml:mn></mml:mrow></mml:math></inline-formula>).</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Calculation of photosynthetic parameters and PP</title>
      <p id="d1e1796">Primary production (PP) was determined from incubations made with PAR at 12 different light intensities
from 0 to <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">800</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M138" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. In total, 64 incubations
were made with water sampled from the surface and/or SCM at 41 stations, and
23 and 25 incubations were selected to represent the conditions at the
surface (5 m) and SCE, respectively (Table 1). Total PP was then calculated
according to Platt et al. (1980):

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M141" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">PP</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">chl</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mi mathvariant="normal">PAR</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:mn mathvariant="normal">24</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:munder><mml:munder><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Deu</mml:mi></mml:mrow></mml:munder><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mfenced open="(" close=")"><mml:mi>z</mml:mi></mml:mfenced><mml:mi mathvariant="normal">chl</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\quad}?><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">PAR</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\quad}?><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">PAR</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mi>B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where the integral is carried out in the vertical (<inline-formula><mml:math id="M142" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>) from the euphotic
depth, Deu (assumed to be 0.1 % PAR; see below), to the surface and
during a 24 h period (<inline-formula><mml:math id="M143" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>). The photosynthetic parameters (<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mi>B</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were determined by fitting the photosynthesis
(<inline-formula><mml:math id="M147" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>) vs. <inline-formula><mml:math id="M148" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula> curves generated from the incubations to the PP expression,
i.e. the terms in the integral in Eq. (3), by a non-linear
Levenberg–Marquardt least-squares routine (Press et al., 1992) and
normalized with in situ chlorophyll concentration obtained from the
calibrated CTD-fluorescence measurement. The case without photoinhibition,
i.e. <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> (Webb et al., 1974), in general, resulted in a poorer
representation of the data (except for six incubations where the
photoinhibition term was set to zero), and the incubation experiments were,
therefore, analysed with the photoinhibition term included in Eq. (3). These
model fits were found to be in very good accordance with the incubation data
(Fig. S2). The maximum rate of photosynthesis, defined as
<inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, was calculated for each <inline-formula><mml:math id="M151" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> vs. <inline-formula><mml:math id="M152" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula> curve (note
that <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> only describes the maximum PP in the case without
photoinhibition).</p>
      <p id="d1e2162">Irradiation was measured continuously during the cruise and the hourly
averaged insolation curve during the day was scaled to equal the daily
averaged PAR measured from the MODIS-Aqua satellite measurements (Frouin et
al., 2012) where the daily averaged PAR for July 2016 in the study area
(13–28 July; 6.2–8.3<inline-formula><mml:math id="M154" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E, 56.2–58<inline-formula><mml:math id="M155" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N) was
506 <inline-formula><mml:math id="M156" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M157" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The vertical light extinction
coefficient (<inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) was determined by linear regression of the
log-transformed PAR measurements from each CTD cast. The average value from
all the CTD casts was found to be <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.14</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.03</mml:mn></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M161" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (standard
deviation: SD, <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">177</mml:mn></mml:mrow></mml:math></inline-formula>), corresponding to a 0.1 % PAR depth level of
50 m. The 0.1 % PAR depth level was in this study assumed to represent
the bottom of the euphotic zone.</p>
      <p id="d1e2269">Primary production estimates at individual sites are dependent upon the value
for the maximum rate of photosynthesis (<inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>). However,
<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> (and all other measured photosynthetic parameters) represents
the physiological condition of<?pagebreak page7319?> the phytoplankton community at the time of
sampling. This means that <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> may vary as a function of time of
sampling (From et al., 2014; Richardson et al., 2016) or during different
light conditions (e.g. photoinhibition). Normalization of the photosynthetic
parameters with chlorophyll also represents an uncertainty in the PP
estimates at individual stations as, for example, division with low
chlorophyll values (e.g. some surface values were <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> mg chl m<inline-formula><mml:math id="M167" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) may result in large uncertainty of the normalized
values due to relatively large absolute errors. This uncertainty error has
been shown to potentially have a significant impact on the estimation of
photosynthetic parameters (e.g. Kumari, 2005; McKee et al., 2014). Finally,
the fact that photosynthetic parameters were determined from incubations
carried out on only one water sample from each sampling depth represents a
source of uncertainty with respect to the estimates of PP at individual
stations. Therefore, in order to compare PP estimates from the stations we
sampled, we applied average values (median for all stations) of
photosynthetic parameters in the surface layer (5 m) and in the SCM in the
calculation of PP. The uncertainties associated with the photosynthetic
parameters are further considered in the Discussion. Surface values were
assumed to represent the photosynthetic parameters in the upper 10 m, and
average values from the SCM were assumed to represent the parameters for the
water column below 10 m.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <?xmltex \opttitle{Vertical nutrient fluxes and $f$ ratios}?><title>Vertical nutrient fluxes and <inline-formula><mml:math id="M168" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios</title>
      <p id="d1e2348">Nitrate was depleted in the surface layer at almost every station and,
therefore, assumed to be the limiting nutrient. This assumption was supported
by the distribution of other nutrients (shown below). The nutricline was
defined as the depth where nitrate equalled 0.5 <inline-formula><mml:math id="M169" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M170" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(the chosen threshold value had, in general, only a minor influence on the
nutricline depth because nutrients were so depleted in the surface layer). In
general, water samples were taken close to the nutricline, i.e. within <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> m. However, at five stations where the nutricline was not resolved well
by the sampling depths, samples from the neighbouring station (i.e. within
5–10 km) were included to increase the resolution. To minimize the
uncertainty of the nutricline depth estimate associated with the linear
interpolation between two neighbouring water samples, the nutricline depth
was found by linear interpolation between the corresponding potential density
anomalies (<inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) of the sample depths, and the nutricline depth
was then identified from the corresponding <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the CTD
profile. This approach is based on the assumption that the nitrate
concentrations between two water samples are more closely related to water
mass characteristics than linearly to depth changes; i.e. a sharp pycnocline,
not resolved by the water samples, is taken into account when the nutricline
depth is estimated by this method. A comparison was made for the whole data
set between nutricline depth estimates based on linear interpolation using
depth and potential density anomaly levels. The difference between the two
methods averaged <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula> m (SD, <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">77</mml:mn></mml:mrow></mml:math></inline-formula>), and the differences ranged
between <inline-formula><mml:math id="M176" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>9.9 and 2.4 m. Thus, in general, the depth-level-based method
resulted in a deeper nutricline (<inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn></mml:mrow></mml:math></inline-formula> m) than the applied <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> method</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e2459">Distributions along Tr4 of <bold>(a)</bold> potential temperature
(<inline-formula><mml:math id="M179" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C; colours and white contours, additional contours above
16 <inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C at 0.5 <inline-formula><mml:math id="M181" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C intervals), <bold>(b)</bold> salinity (psu;
colours and white contours, additional contours between 26 and 34 at 0.5 psu
intervals) and contours of potential density anomalies (intervals of
1 kg m<inline-formula><mml:math id="M182" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; orange lines), <bold>(c)</bold> oxygen
(<inline-formula><mml:math id="M183" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M184" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; colours and black contours), and
<bold>(d)</bold> nitrate (<inline-formula><mml:math id="M185" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M186" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; colours and white contours
and orange contours of potential density anomalies as in <bold>(b)</bold>.
Vertical lines show location of the CTD measurements.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f02.jpg"/>

        </fig>

      <p id="d1e2562">At all stations where nitrate was present (<inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">73</mml:mn></mml:mrow></mml:math></inline-formula>), the nutricline was found
to be located above the depth of the 0.1 % PAR light level, and,
therefore, the flux of nitrate (<inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for NP was found by
calculating the maximum flux into the euphotic zone (only transports from
vertical turbulent mixing were measured; thus, contributions from vertical
advection were not considered). The vertical nitrate flux (<inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>)
due to turbulent mixing is defined as
            <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M190" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the vertical nitrate gradient is reformulated in terms of density
(Sharples et al., 2007). By applying this reformulated relationship, together
with the definition of the vertical turbulent diffusion coefficient in
Eq. (1), an expression for the nitrate flux in terms of the measured
dissipation rate of TKE becomes
            <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M191" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>g</mml:mi></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          The advantage of this expression, compared to simply applying <inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the
vertical nitrate gradient directly, is the dependence on the measured
dissipation rate, rather than the derived <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> value. The latter includes
the calculation of the Brunt–Väisälä frequency; cf. Eq. (2). This
term becomes close to zero in very turbulent conditions, and, thereby, <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
becomes sensitive to rounding errors and other uncertainties in the
measurements. The gradient of nitrate at a given depth was determined
linearly from the nearest water sample depths.</p>
      <?pagebreak page7320?><p id="d1e2772">PP was related to the vertical nitrate flux by estimating the <inline-formula><mml:math id="M195" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratio,
calculated as <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi mathvariant="normal">PP</mml:mi></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the Redfield ratio between nitrogen and carbon, i.e.
<inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:mn mathvariant="normal">16</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">106</mml:mn></mml:mrow></mml:math></inline-formula> (Redfield et al., 1963).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Water mass distributions</title>
      <p id="d1e2855">The northern North Sea is a region in which North Atlantic water transported
towards the Skagerrak, water masses formed in the shallower part of the North
Sea, and outflowing low-saline water from the Baltic Sea come together. Water
masses and the general circulation in the area have been described by
Danielssen et al. (1990), and the general water mass characteristics they
identified are included in the description below. Their analysis was based on
measurements obtained in the Skagerrak and the northeastern North Sea in
1990–1991.</p>
      <p id="d1e2858">The inflow of Atlantic water to the northern North Sea, in general, takes
place between the Orkneys and Shetland, above the shelf east of the Shetlands
and in the deep Norwegian channel, and the deep inflow in the Norwegian
channel dominates during the summer period (Winther and Johannesen, 2006).
Atlantic water masses (AWs) are characterized by salinities <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula> and can be
further delineated as upper Atlantic water (AWu; <inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">35.00</mml:mn></mml:mrow></mml:math></inline-formula>–35.15 and <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>–10 <inline-formula><mml:math id="M202" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) and a slightly colder and more saline deeper Atlantic
water mass (AWd; <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">35.15</mml:mn></mml:mrow></mml:math></inline-formula>–35.32, <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:math></inline-formula>–10 <inline-formula><mml:math id="M205" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, Fig. 1b).
The AWd was observed on the westernmost transects (Tr4 and Tr5) between
100 and 300 m along the shelf edge. High-saline AWd was also present in the
depth range 120–200 m on Tr1 (not shown). AWu was observed at the shelf
edge at depths below 60 m on Tr2–5 whereas it was found at depths below
80 m on Tr1 (Fig. 2). An upward doming of the AWu was seen to reach to <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> m between the shelf edge and the Norwegian coast, from where isotherms
and isohalines tended to deepen towards Norway. Central North Sea water
(CNSW; <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">34.80</mml:mn></mml:mrow></mml:math></inline-formula>–35.0 and <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>–10 <inline-formula><mml:math id="M209" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C), a mixture of Atlantic
water and Scottish coastal water, was located above AWu, and a distinct
frontal zone between the two water masses was seen along the shelf edge where
bottom depths ranged between 40 and 60 m.</p>
      <p id="d1e2983">The influence of southern North Sea water (SNSW; <inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">34.50</mml:mn></mml:mrow></mml:math></inline-formula>–34.8, <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>–12 <inline-formula><mml:math id="M212" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) (note the larger temperature interval in mid-summer than
defined in Danielssen et al., 1990) and low nitrate concentrations,
originating from the English Channel, was seen at the shallower stations (<inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m) on all transects except Tr1. Warm subsurface water between 20 and 40 m
at Tr1 indicated an influence from the Jutland coastal water mass (JCW, <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">32</mml:mn></mml:mrow></mml:math></inline-formula>–34 and <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>–15 <inline-formula><mml:math id="M216" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) on this transect. The surface mixed
layer varied between 5 and 15 m with the lowest salinities seen in the
Norwegian coastal water mass (<inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">28</mml:mn></mml:mrow></mml:math></inline-formula>) and the highest surface salinities
being found above the well-mixed shallow parts of the North Sea (<inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">34.5</mml:mn></mml:mrow></mml:math></inline-formula>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e3089">Distributions of chlorophyll <inline-formula><mml:math id="M219" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (mg chl m<inline-formula><mml:math id="M220" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; colours and
black contours, additional white contours are shown at intervals of
2 mg chl m<inline-formula><mml:math id="M221" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) along Tr1–Tr5 <bold>(a–e)</bold>. Nutricline depths (red
bullets) and depths with maximum nitrate flux into the euphotic zone (orange
squares) were calculated at each station where water samples (black
triangles) and turbulence profiles were made, respectively. Contours of
potential density anomalies are shown at intervals of 1 kg m<inline-formula><mml:math id="M222" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (orange
lines). Note the different latitude-intervals in the figures.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f03.jpg"/>

        </fig>

      <p id="d1e3145">A distinct subsurface oxygen maximum (<inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">240</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M224" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M225" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) between <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> and 35 m depth characterized
the deeper area north of the shelf edge whereas a less well-defined maximum
was present above the shelf edge and in the shallow North Sea (Fig. 2c). The
bottom water (<inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula>–60 m) in the shallow areas exhibited relatively low
oxygen concentrations, i.e. <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M229" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M230" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. High nitrate
concentrations characterized Atlantic water masses whereas very low nitrate
concentrations were observed in<?pagebreak page7321?> the surface layer and above the shallow
southern part of the area (Fig. 2d).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Chlorophyll and nutrient distributions</title>
      <p id="d1e3239">The subsurface chlorophyll concentrations were relatively high (<inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> mg chl <inline-formula><mml:math id="M232" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M233" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in the shallower regions of the study area
(Fig. 3). A narrow well-defined subsurface chlorophyll maximum extended from
the shelf edge towards the Norwegian coast, i.e. close to the
27 kg m<inline-formula><mml:math id="M234" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> isopycnal. The depth of the subsurface chlorophyll maximum
tracked the nutricline from the shelf edge, where the nutricline was
separating the nutrient-depleted surface layer from the nutrient-rich
Atlantic water (Fig. 4a, b).</p>
      <p id="d1e3283">In general, a sharp nutricline separated the nutrient depleted surface layer
from the nutrient-rich Atlantic water with nitrate concentrations above
6 <inline-formula><mml:math id="M235" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M236" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. For example, an increase from values below the
detection limit (0.1 <inline-formula><mml:math id="M237" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol nitrate kg<inline-formula><mml:math id="M238" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) to values above
2 <inline-formula><mml:math id="M239" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M240" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> was observed across a 5 m distance (35–40 m
depth) at the shelf edge on time series station T2 at Tr4
(57.31<inline-formula><mml:math id="M241" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N). The nutricline between CNSW and AWu was located at
density-anomalies of <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">27.3</mml:mn></mml:mrow></mml:math></inline-formula> kg m<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, whereas the nutricline was
located below the 26.5 kg m<inline-formula><mml:math id="M244" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> isopycnal in areas influenced by
SSW (Skagerrak surface water) and
Norwegian coastal water masses. Thus, high nutrient concentrations were found
in the cold (<inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M246" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) Atlantic water masses, and low concentrations
were associated with CNSW, SNSW, and SSW.</p>
      <p id="d1e3407">Nitrate was not detectable at the southernmost stations south of
56.88<inline-formula><mml:math id="M247" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N at Tr5, 57.00<inline-formula><mml:math id="M248" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N at Tr4 and Tr3, and
57.21<inline-formula><mml:math id="M249" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N at Tr2, whereas the southernmost station at Tr1 showed
detectable nitrate (0.2–0.3 <inline-formula><mml:math id="M250" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M251" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between the surface
and 30 m) at the near-coastal station, likely influenced by nutrient-rich
JCW (Fig. 1). Bottom samples were typically made down to <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> m from the
bottom, i.e. within the benthic boundary layer, and, considering the
relatively large turbulent diffusion coefficients in the benthic boundary
layer, this supported the interpretation that no detectable nitrate was
present in the water column at the southernmost stations along Tr2–Tr5.</p>
      <p id="d1e3467">The assumption that nitrate was the limiting nutrient for phytoplankton was
supported by the phosphate distributions, in that the <inline-formula><mml:math id="M253" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:math></inline-formula> ratio was
found to be significantly below Redfield (<inline-formula><mml:math id="M254" display="inline"><mml:mrow class="chem"><mml:mn mathvariant="normal">16</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>) at all stations and
all depths, with the exception of a few samples above the shallow area
(Fig. 4c). Nitrate depletion was observed at stations above the shallow
southern North Sea, where excess phosphate compared to the Redfield
<inline-formula><mml:math id="M255" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:math></inline-formula> ratio suggested significant denitrification to be occurring. There
was, in general, no indication of silicate limitation because relatively high
values (up to 10 <inline-formula><mml:math id="M256" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M257" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) were observed above the
nitrate-depleted shallow area and low silicate values in the deeper part were
also associated with low nitrate concentrations (not shown).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p id="d1e3528"><bold>(a)</bold> Potential temperature–salinity diagram of all
CTD measurements and <bold>(b)</bold> a high-saline subset of the measurements
(small grey bullets). Water sample concentrations of nitrate are shown by large bullets in <bold>(a, b)</bold> (<inline-formula><mml:math id="M258" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M259" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, colour bar).
Contour lines show isopycnals of potential density anomalies, and selected
water masses are indicated. <bold>(c)</bold> Nitrate vs. phosphate for all water
samples. The total water depth is shown with colours (m) and the relationship
[<inline-formula><mml:math id="M260" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M261" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> [<inline-formula><mml:math id="M263" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>],
<inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">N</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:mn mathvariant="normal">16</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mrow></mml:math></inline-formula>, is shown by a grey dashed line.</p></caption>
          <?xmltex \igopts{width=147.954331pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f04.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>Mixing and vertical nitrate fluxes</title>
      <p id="d1e3648">Dissipation of TKE was low, i.e. <inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> W kg<inline-formula><mml:math id="M266" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, below <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m in the deeper areas north of the shelf edge but increased by an order
of magnitude above the shelf edge, where values up to <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> W kg<inline-formula><mml:math id="M269" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the benthic boundary layer were recorded (Fig. 5a,
b). Dissipation rates of TKE in the 20–40 m depth range varied between
10<inline-formula><mml:math id="M270" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>–10<inline-formula><mml:math id="M271" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M272" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> above the deeper areas and increased to
10<inline-formula><mml:math id="M273" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>–10<inline-formula><mml:math id="M274" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M275" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> above the shallow areas along Tr2. In the
upper part of the water column, between 10 and 20 m depth, the dissipation rate
of TKE increased to 10<inline-formula><mml:math id="M276" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>–10<inline-formula><mml:math id="M277" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M278" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> due to mixing induced
by wind and waves. The distribution of the vertical turbulent diffusion
coefficient showed a characteristic pattern along all transects where very
low <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values of <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M281" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M282" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between 15 and 30 m depth
characterized the deeper open areas, i.e. around the pycnocline. Increased
mixing was seen at the shelf edge and in the <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> m thick benthic
boundary layer further south above the shallow shelf (Fig. 5c, d; note that
the<?pagebreak page7322?> shallow turbulence profiles on Tr4 did not resolve the benthic boundary
layer). The highest <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values, i.e. <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M286" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M287" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, were
observed at the shelf edge and in the benthic boundary layer above the
shallow part of the shelf.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e3936">Turbulence measurements along Tr2 <bold>(a, c)</bold> and
Tr4 <bold>(b, d)</bold>. <bold>(a, b)</bold> Logarithm (Log<inline-formula><mml:math id="M288" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>) of dissipation of
turbulent kinetic energy (W kg<inline-formula><mml:math id="M289" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and <bold>(c, d)</bold> calculated
vertical turbulent diffusion coefficient (m<inline-formula><mml:math id="M290" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M291" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f05.png"/>

        </fig>

      <p id="d1e4000">Vertical nitrate fluxes were calculated for all stations where both nutrients
and turbulence profiles were measured. Examples are shown for four stations
across the shelf edge on Tr4, obtained on 27 July between 14:00 and
17:30 UTC, with a station spacing of <inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> km, in an area where there is
a northward increase in the depth from 82 to 122 m (Fig. 6). The nutricline
was located at <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula> m, and this depth was relatively close to the
increased mixing in the bottom boundary layer. Increased mixing is seen at
the station located at 57.404<inline-formula><mml:math id="M294" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N (Fig. 6c, g), and this results here
in a maximum nitrate flux to the euphotic layer of
0.3 mmol N m<inline-formula><mml:math id="M295" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M296" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m. In general, the maximum
vertical nitrate flux into the euphotic zone in the deeper parts along the
five transects was located 5–10 m below the nutricline (Fig. 3, orange
squares), whereas the SCM was located at the nutricline (Figs. 3, 6a).
Although the nitrate flux at this depth was relatively low, this showed the
close relationship between SCM and nutricline depth.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Photosynthetic parameters</title>
      <p id="d1e4073">Photosynthetic parameters can vary as a function of sampling time and in situ
light conditions. Therefore, in order to be able to compare the potential PP
at different stations, we averaged photosynthetic parameters for the surface
layer (5 m) and from the SCM. In total, 64 incubations were
made. Fifty-eight of the incubations were fitted with the photoinhibition
term, whereas six incubations did not show any significant decrease for
increasing light levels. Therefore, the inhibition term was excluded in these
calculations. To make the data set representative of the whole study area,
incubations from the closely spaced (1–3 km) stations on Tr2 were excluded
(i.e. 14 stations between the two stations shown with incubations at Tr2 in
Fig. 1a), and, to reduce the impact from outliers, representative values are
calculated as median and median absolute deviation values (Table 1).</p>
      <p id="d1e4076">The median chlorophyll concentrations at the surface and SCM were 0.16 and
1.68 mg chl <inline-formula><mml:math id="M298" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. This reflected the general
increase in chlorophyll with depth observed over the entire area. The
chlorophyll-normalized photosynthetic parameters of the photosynthetic rate
constant (<inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>) and the slope of the PE (i.e. photosynthesis vs. irradiance) curve (<inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) in the
surface layer were 5.48 <inline-formula><mml:math id="M302" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C (<inline-formula><mml:math id="M303" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h)<inline-formula><mml:math id="M304" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
0.041 <inline-formula><mml:math id="M305" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C
(<inline-formula><mml:math id="M306" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h <inline-formula><mml:math id="M307" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M308" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M309" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)<inline-formula><mml:math id="M310" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively,
and the corresponding values of <inline-formula><mml:math id="M311" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M312" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> at the SCM
were 2.33 and 0.027. Thus, <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> was significantly lower at the SCM,
in general accordance with previous studies (see review in Richardson et al.,
2016), whereas <inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> showed a weak decrease with depth (with
overlapping uncertainty intervals between the two depth levels). In general,
<inline-formula><mml:math id="M315" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> has been found to increase significantly with depth (resulting
in a more efficient photosynthetic response at low light levels), and
inspection of the vertical distribution showed at tendency to higher values
between 15 and 25 m depth (i.e. 2–3 <inline-formula><mml:math id="M316" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula>-folding depth of PAR) and lower
values below 30 m resulting in a lower median value from SCM level. It was
noted that a similar pattern of <inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, with a subsurface maximum, has
been observed at the European shelf in the Celtic Sea (Hickman et al., 2012).</p>
      <p id="d1e4285">There was a significant averaged photoinhibition (<inline-formula><mml:math id="M318" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) at both depth
levels (1.70 and 3.00 (10<inline-formula><mml:math id="M319" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M320" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C
(<inline-formula><mml:math id="M321" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M322" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M323" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h)<inline-formula><mml:math id="M324" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)). However, the average values at
these depths were not significantly different. The maximum PP was
characterized by <inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> values of 4.76 and
1.72 <inline-formula><mml:math id="M326" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g C (<inline-formula><mml:math id="M327" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g chl h)<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at the surface and SCM,
respectively,<?pagebreak page7323?> corresponding to maximum PP at PAR levels of 413 and
192 <inline-formula><mml:math id="M329" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>E m<inline-formula><mml:math id="M330" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M331" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The averaged parameters for the two
depth levels of <inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mi>B</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> were applied for
calculating PP in the water column according to Eq. (3). A comparison was
made between the resulting PE curves and the maximum averaged PP from all the
incubations (i.e. the <inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula> in Table 1).
These values were found to fit the averaged curves for the two depth levels
within 5 %, and, therefore, the PE-curve-based values in Table 1 were
assumed to be representative of average conditions and applied in the
calculation of PP for all of the stations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e4501">Vertical profiles from four stations across the shelf edge
of <bold>(a–d)</bold> potential density anomaly, chlorophyll <inline-formula><mml:math id="M337" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, and nitrate
(bullets) and <bold>(e–h)</bold> dissipation of TKE (average value and values
from the two shear sensors are shown by bullets and open circles,
respectively), Brunt–Väisälä frequency (dashed line), turbulent
diffusion coefficient, and the vertical turbulent nitrate flux. The
nutricline depth (<inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and depth of the euphotic zone (0.1 %
PAR) are shown (dashed and dotted lines), and station information of
locations, <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and maximum <inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> to the euphotic
zone are shown in the panels <bold>(e)</bold>–<bold>(h)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f06.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS5">
  <title>Vertically integrated chlorophyll, PP, and NP</title>
      <p id="d1e4581">The vertically integrated chlorophyll in the euphotic zone (50 m) showed a
local maximum south of the shelf edge along all transects and a decrease in
chlorophyll further south at the two westernmost transects, i.e. Tr4 and Tr5
(Fig. 7a). Relatively low values were observed in the area north of the
shelf edge with the exception of an area close to Norway where high values
were observed. The averaged vertically integrated chlorophyll from all
stations was <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:mn mathvariant="normal">29.9</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">7.8</mml:mn></mml:mrow></mml:math></inline-formula> mg chl <inline-formula><mml:math id="M342" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M343" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (SD, <inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">128</mml:mn></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e4627">The distribution of vertically integrated total PP showed a similar pattern
with increased PP levels south of the shelf edge and a somewhat reduced PP
further south at the two westernmost transects (Fig. 7b). A tendency to
minimum values was observed at the shelf edge with an increasing tendency
towards Norway with high PP values being observed at a few stations near the
Norwegian coast. The averaged vertically integrated PP from all stations was
<inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:mn mathvariant="normal">476</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">110</mml:mn></mml:mrow></mml:math></inline-formula> mg C m<inline-formula><mml:math id="M346" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M347" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">128</mml:mn></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e4678">The maximum nitrate flux into the euphotic zone (<inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and the
<inline-formula><mml:math id="M350" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratio were calculated for each station where nitrate and turbulence
measurements were made and where nitrate was present in detectable
concentrations. The vertical distribution of the maximum nitrate flux was, in
general, characterized by being located below the SCM (cf. Fig. 3, Table 2).
However, the horizontal distribution showed a characteristic pattern where
increased fluxes and <inline-formula><mml:math id="M351" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios were found along the shelf edge on Tr2–Tr5
(nitrate fluxes were not measured at the shelf edge and at shallow stations
at Tr1). Increased fluxes were also observed near the Norwegian coast at Tr1
and Tr4, and low nitrate fluxes and <inline-formula><mml:math id="M352" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios characterized the open area
between the shelf edge and Norway (Fig. 7c, d).</p>
</sec>
<sec id="Ch1.S3.SS6">
  <title>Distributions across the shelf edge</title>
      <p id="d1e4723">A comparison of distributions of PP-related parameters across the shelf edge
showed common trends over all five transects (Figs. 7, S3). Vertically
integrated chlorophyll and PP were relatively low, with values of <inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> mg chl <inline-formula><mml:math id="M354" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M355" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">400</mml:mn></mml:mrow></mml:math></inline-formula> mg C m<inline-formula><mml:math id="M357" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M358" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively, on the southernmost parts of the transects. A gradual northward
increase towards maximum values (of <inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">60</mml:mn></mml:mrow></mml:math></inline-formula> mg chl m<inline-formula><mml:math id="M360" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> mg C m<inline-formula><mml:math id="M362" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M363" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) was observed within a distance of <inline-formula><mml:math id="M364" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km south of the shelf edge on Tr3–Tr5. Transect 2 did not reach as far
south of the shelf edge. This could explain the southern maximum in
chlorophyll and PP at Tr2. Transect 1 was influenced by nutrient-rich JCW, and
this may be the reason for the high chlorophyll concentration
(43 mg chl <inline-formula><mml:math id="M365" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M366" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and PP (1746 mg C m<inline-formula><mml:math id="M367" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M368" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) at the
southernmost station on this transect.</p>
      <p id="d1e4900">Relatively low values of <inline-formula><mml:math id="M369" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> mg chl m<inline-formula><mml:math id="M370" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
400 mg C m<inline-formula><mml:math id="M371" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M372" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively, characterized chlorophyll and
PP at the shelf-edge zone. These values increased slightly towards Norway to
<inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> mg chl <inline-formula><mml:math id="M374" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M375" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and 5–600 mg C m<inline-formula><mml:math id="M376" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M377" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively. High values were observed in Norwegian coastal water masses on
Tr1 and Tr4, probably due to PP being stimulated by coastal upwelling (also
indicated by relatively cold Norwegian coastal surface water masses observed
from satellite in Fig. 1b). Stations on Tr2 and Tr4 were visited twice within
one week. Significant temporal variation in chlorophyll and PP was<?pagebreak page7324?> observed
(Fig. S3) between samplings. Chlorophyll increased by up to 40 % above
the shallow area near the shelf edge and a similar increase was seen in PP.
Relatively large temporal variations were also seen in these parameters in
the coastal Norwegian water masses.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p id="d1e5006">Median values and absolute median deviations of all data in three
depth intervals, depth of maximum nitrate flux (Depth<inline-formula><mml:math id="M378" display="inline"><mml:msub><mml:mi/><mml:mo>max⁡</mml:mo></mml:msub></mml:math></inline-formula>), maximum
nitrate flux into the euphotic zone (FNO3<inline-formula><mml:math id="M379" display="inline"><mml:msub><mml:mi/><mml:mo>max⁡</mml:mo></mml:msub></mml:math></inline-formula>), depth of nutricline
(<inline-formula><mml:math id="M380" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>), vertically integrated chlorophyll <inline-formula><mml:math id="M381" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
(chl<inline-formula><mml:math id="M382" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">int</mml:mi></mml:msub></mml:math></inline-formula>), and primary production (PP).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Depth interval</oasis:entry>
         <oasis:entry colname="col2">Depth</oasis:entry>
         <oasis:entry colname="col3">Depth<inline-formula><mml:math id="M383" display="inline"><mml:msub><mml:mi/><mml:mo>max⁡</mml:mo></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M384" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">FNO</mml:mi><mml:msub><mml:mn mathvariant="normal">3</mml:mn><mml:mi mathvariant="normal">max</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M385" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Chl<inline-formula><mml:math id="M386" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">int</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">PP</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">(m)</oasis:entry>
         <oasis:entry colname="col2">(m)</oasis:entry>
         <oasis:entry colname="col3">(m)</oasis:entry>
         <oasis:entry colname="col4">(mmol N m<inline-formula><mml:math id="M387" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M388" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col5">(m)</oasis:entry>
         <oasis:entry colname="col6">(mg chl m<inline-formula><mml:math id="M389" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">(mg C m<inline-formula><mml:math id="M390" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M391" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">50–80</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M392" display="inline"><mml:mrow><mml:mn mathvariant="normal">65</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M393" display="inline"><mml:mrow><mml:mn mathvariant="normal">39</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M394" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.04</mml:mn></mml:mrow></mml:math></inline-formula> (25)</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:mn mathvariant="normal">34.5</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">4.5</mml:mn></mml:mrow></mml:math></inline-formula> (28)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:mn mathvariant="normal">34.8</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">13.3</mml:mn></mml:mrow></mml:math></inline-formula> (69)</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:mn mathvariant="normal">476</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">138</mml:mn></mml:mrow></mml:math></inline-formula> (69)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">80–130</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M398" display="inline"><mml:mrow><mml:mn mathvariant="normal">97</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">11</mml:mn></mml:mrow></mml:math></inline-formula> (18)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M399" display="inline"><mml:mrow><mml:mn mathvariant="normal">43</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> (18)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.11</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.07</mml:mn></mml:mrow></mml:math></inline-formula> (18)</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:mn mathvariant="normal">34.5</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula> (20)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:mn mathvariant="normal">26.4</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2.9</mml:mn></mml:mrow></mml:math></inline-formula> (24)</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:mn mathvariant="normal">419</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">41</mml:mn></mml:mrow></mml:math></inline-formula> (24)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">130</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:mn mathvariant="normal">263</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">58</mml:mn></mml:mrow></mml:math></inline-formula> (30)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:mn mathvariant="normal">32</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> (30)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.06</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.03</mml:mn></mml:mrow></mml:math></inline-formula> (30)</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:mn mathvariant="normal">26.5</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">4.0</mml:mn></mml:mrow></mml:math></inline-formula> (31)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M409" display="inline"><mml:mrow><mml:mn mathvariant="normal">26.6</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">4.2</mml:mn></mml:mrow></mml:math></inline-formula> (35)</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M410" display="inline"><mml:mrow><mml:mn mathvariant="normal">528</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">101</mml:mn></mml:mrow></mml:math></inline-formula> (35)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e5518"><bold>(a)</bold> Vertically integrated chlorophyll <inline-formula><mml:math id="M411" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
(mg chl <inline-formula><mml:math id="M412" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M413" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and <bold>(b)</bold> primary production
(mg C m<inline-formula><mml:math id="M414" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M415" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Values are proportional to the diameter of the
circles. <bold>(c)</bold> Distribution of maximum nitrate flux to the euphotic
zone (<inline-formula><mml:math id="M416" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, mmol N m<inline-formula><mml:math id="M417" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M418" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and <bold>(d)</bold> <inline-formula><mml:math id="M419" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>
ratios for the euphotic zone (colours, no unit).</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f07.png"/>

        </fig>

      <p id="d1e5636">A nutricline could, in general, not be identified above the shallow areas
south of the shelf edge except at two stations on Tr3 and Tr4 (cf. Fig. 2c,
d; at both stations high nitrate concentrations of
0.9–1 <inline-formula><mml:math id="M420" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M421" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> were only measured at 5 m while low values
of 0.1–0.3 <inline-formula><mml:math id="M422" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M423" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> were found below 10 m). The deepest
nutricline depths (<inline-formula><mml:math id="M424" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m) were found near the shelf edge. Nutricline
depth decreased to <inline-formula><mml:math id="M425" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> m going northwards but then increased again in
the coastal Norwegian water masses (Fig. 8c). Nitrate fluxes were generally
very low (<inline-formula><mml:math id="M426" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> mmol N m<inline-formula><mml:math id="M427" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M428" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in the deeper area north of
the shelf edge due to low vertical mixing in the upper 50 m. However, the
largest nutrient fluxes were seen in the shelf-edge zone and near the
Norwegian coast. This resulted in <inline-formula><mml:math id="M429" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios above 0.10 in these regions
compared to <inline-formula><mml:math id="M430" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> for the remainder of the study area (Figs. 7, S3).</p>
      <p id="d1e5749">The distributions were analysed across the shelf edge by dividing the
stations into three depth ranges characterizing the shallow area (50–80 m),
the shelf-edge zone (80–130 m), and the deep area (<inline-formula><mml:math id="M431" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">130</mml:mn></mml:mrow></mml:math></inline-formula> m) (Table 2). Although the shelf edge was characterized by the largest nutrient
fluxes, the averaged values were not significantly higher than observed above
the deeper areas. However, the depth of the maximum flux was found to be
significantly deeper (<inline-formula><mml:math id="M432" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">43</mml:mn></mml:mrow></mml:math></inline-formula> m) above the shelf edge than in the deeper
area (<inline-formula><mml:math id="M433" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">32</mml:mn></mml:mrow></mml:math></inline-formula> m). This can be explained by the significantly deeper
nutricline at the shelf edge (<inline-formula><mml:math id="M434" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula> m) than observed above the deeper
area (<inline-formula><mml:math id="M435" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">27</mml:mn></mml:mrow></mml:math></inline-formula> m). Distributions of vertically integrated chlorophyll and
PP support the idea that minimum values are found above the shelf edge. However, the
low values are not significantly different from<?pagebreak page7325?> the larger values above the
deeper and shallower part of the area.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e5805">Time series station over 36 h at the shelf edge. <bold>(a, b)</bold> Tidal current speed cubed; CTD measurements in
panels <bold>(c)</bold>, <bold>(e)</bold>, <bold>(g)</bold>, and <bold>(h)</bold> of
potential temperature, salinity, oxygen, and Brunt–Väisälä
frequency, respectively. Turbulence measurements of <bold>(d)</bold> dissipation
rate of TKE and <bold>(f)</bold> calculated vertical turbulent diffusion
coefficient. Observations are shown by small grey bullets and samples for
water chemistry are shown by bullets in <bold>(g)</bold>.</p></caption>
          <?xmltex \igopts{width=318.670866pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f08.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS7">
  <title>Temporal variability at the shelf edge</title>
      <p id="d1e5845">Data were collected over 36 h from a time series station located on the shelf
edge on Tr4 (depth 82 m; 57.314<inline-formula><mml:math id="M436" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 6.765<inline-formula><mml:math id="M437" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E; from 29 July
07:07 to 30 July 19:25) where CTD casts and turbulence measurements were
carried out every hour (although no turbulence measurements were made during
the night at this station). Variability was related to the tidal current
obtained from the barotropic OTIS model of the North Sea (Egbert and
Erofeeva, 2002). The model depth (<inline-formula><mml:math id="M438" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula>) at the time series location was 80 m,
it considers 11 tidal constituents, its general performance has
previously been validated, and a comparison was also made against tide tables
for the period from Hanstholm harbour located on the Danish coast
(57.17<inline-formula><mml:math id="M439" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 8.62<inline-formula><mml:math id="M440" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E). The model result showed excellent
agreement with the tidal phases. Tidal energy input was estimated from the
cube of the barotropic tidal current (<inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>; e.g. Simpson and Sharples,
2012). This energy input represents the source for tidally induced vertical
mixing and can be compared with turbulent mixing in the water column.</p>
      <?pagebreak page7326?><p id="d1e5903">The water column was characterized by a homogenous mixed layer in the upper
5–10 m, a pycnocline at <inline-formula><mml:math id="M442" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> m, and a relatively homogenous
temperature and salinity distribution below <inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">45</mml:mn></mml:mrow></mml:math></inline-formula> m (<inline-formula><mml:math id="M444" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M445" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) (Fig. 8). A sharp nutricline between 38 and 40 m separated
the nitrate-depleted surface layer from the nitrate-rich bottom water (<inline-formula><mml:math id="M446" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M447" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M448" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; not shown). An oxygen maximum layer between
20–40 m separated the oxygenated surface layer from the bottom layer with a
relatively lower oxygen concentration. Weak temperature and salinity
stratification was observed at the start and end of the period (i.e. between
DoY (day of year) 210.3–210.7 and 211.3–211.7), and a corresponding change was observed in
the bottom oxygen concentration. The period between DoY 210.6 and 211.2 was
characterized by a relatively homogenous bottom layer (<inline-formula><mml:math id="M449" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> m). Increased
turbulence (<inline-formula><mml:math id="M450" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M451" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and decreased stratification (<inline-formula><mml:math id="M452" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>)
were also observed in this period (Fig. 8d–h). Mixing in the bottom layer
increased simultaneously with tidal energy input (Fig. 8a, b). This indicated
that tidal barotropic currents overlain on baroclinic currents along the
shelf edge could explain the temporal variability in turbulence.</p>
      <p id="d1e6016">Dissipation of TKE in the bottom layer at the time of the maximum observed
dissipation (DoY <inline-formula><mml:math id="M453" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 210.8) was comparable with the energy input from the
tides (<inline-formula><mml:math id="M454" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> W m<inline-formula><mml:math id="M455" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Additional energy for turbulence may
also be provided from non-tidal currents along the shelf edge (strong
eastward currents below 20 m were noted at the time of some of the
turbulence profiles). A relatively large deepening of both <inline-formula><mml:math id="M456" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M457" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>, and
<inline-formula><mml:math id="M458" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> below the pycnocline was observed between
DoY <inline-formula><mml:math id="M459" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 211.25–211.4. Nutrient concentrations below 60 m showed an
increase from 2–3 to 5–6 <inline-formula><mml:math id="M460" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M461" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. This indicated that
advection of water below the pycnocline could explain the
short-term variation observed.</p>
      <p id="d1e6106">Thus, the observed temporal variability in water column structure and
nutrient distributions at the shelf edge shows that varying mixing
intensities may interfere with the bottom of the euphotic zone and, thereby,
promote diapycnal nutrient fluxes and stimulate NP. The variability arises
due to different physical processes, which cannot be identified in detail
from the present data set. This may also explain the observed variability
between stations located in the shelf-edge area (Table 2). Periods of low
mixing in the euphotic zone may be followed by short periods of intense
mixing. Such temporal variability is a challenge to document over a larger
area.</p>
</sec>
</sec>
<?pagebreak page7327?><sec id="Ch1.S4">
  <title>Discussion</title>
      <p id="d1e6117">The shelf edge was identified in this study as a potential area of localized
NP during the stratified summer period in the northeastern North Sea. Very
low nitrate fluxes and <inline-formula><mml:math id="M462" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios were estimated for most of the open water
extending northwards from the shelf edge towards Norway. Likewise, little or
no NP was estimated to be occurring in the nitrate-depleted shallow reaches
of the southern North Sea. Previous studies have shown that shelf-edge areas
can be productive regions, for example characterized by increased fishing
activity (Sharples et al., 2013). In relation to the observations reported by
Sharples et al. (2013), we speculate that the abundance of fish in this area
could be related to a localized increase in NP relative to surrounding
waters. It can also be noted that the northeastern shelf-edge area is
characterized by increased fish species diversity (ICES, 2008), suggesting
that the introduction of new nutrients to the euphotic region of the water
column identified for this region may be influencing both food webs and
ecosystem structure.</p>
      <p id="d1e6127">Localized NP at the shelf edge will also influence the oxygen concentration
in subsurface water masses (Fig. 2). This can have a direct influence on
ambient water with relatively low oxygen above the shallow shelf and
influence conditions further downstream, where water masses from the shelf
edge eventually reach the North Sea–Baltic Sea transition zone and contribute
to bottom water ventilation in more eutrophic areas (Bendtsen et al., 2009).</p>
      <p id="d1e6130">The possible occurrence of localized NP also implies that physical processes
on relatively small spatial scales (<inline-formula><mml:math id="M463" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> km) are important for modelling
NP in the area. This is in general accordance with model studies where the
resolution of physical processes at high spatial scales was found to be
necessary to explain observed patterns of PP in the North Sea (Skogen and
Moll, 2000). Holt et al. (2012) applied a high-resolution model of the whole
North Sea area and showed that nutrient transports towards the shelf area
were of primary importance for understanding PP and also for assessing the
impact from climate change (Holt et al., 2010). Localized NP at the shelf
edge in the northeastern North Sea may be representative of the
open-ocean–shallow-shelf exchange of nutrients more generally. If so, then
this NP may also impact nutrient conditions above the shallow central North
Sea and may explain some of the recent decadal decline in PP in this area
(Capuzzo et al., 2018).</p>
<sec id="Ch1.S4.SS1">
  <title>Regenerated production above the shallow shelf</title>
      <p id="d1e6148">There was no measurable nitrate in the water column at stations south of the
shelf edge., i.e. an area where the whole water column was within the
euphotic zone, i.e. <inline-formula><mml:math id="M464" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> m (Fig. 1a, yellow lines). This indicates that
nitrate sinks, i.e. biological consumption or denitrification, exceed nitrate
sources, i.e. nitrification, nitrogen fixation, or advective supply during
summer months in this region. Significant nitrification may take place in the
water column (Clark et al., 2008; Zehr and Kudela, 2011) or in the sediment
and, as pointed out in the work of Dugdale and Goering (1967), nitrate can,
in this case, not be considered as a non-regenerated nutrient form in the
euphotic zone. Yool et al. (2007) estimated a global specific nitrification
rate of 0.2 d<inline-formula><mml:math id="M465" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; thus, even small concentrations of ammonium could lead
to significant nitrification rates. Concentrations of ammonium were, however,
very low in the nitrate-depleted area. For example, ammonium was undetectable
at all nitrate-depleted stations on Tr5, and this indicated a relatively small
contribution from nitrification in the euphotic zone. Observed nitrification
rates span a large range (Yool et al., 2007), and the importance of
nitrification varies between ocean regions (Clark et al., 2008; Fawcett et
al., 2015). Therefore, it remains an open question whether or not significant
nitrification takes place in the euphotic zone in the area.</p>
      <p id="d1e6173">Diazotrophy constitutes another potential source of nitrogen to the
nitrate-depleted surface layer and <inline-formula><mml:math id="M466" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation has been measured in
the southern North Sea at Dogger Bank (Fan et al., 2015). However, the
estimated nitrogen fluxes from <inline-formula><mml:math id="M467" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fixation were very small compared
to the relatively high PP. Increased nutrient fluxes and NP at the shelf edge
could also support PP in the ambient shallow areas through isopycnal
transport of dissolved organic material. A substantial fraction of dissolved
organic material remineralizes on timescales of days to weeks (Bendtsen et
al., 2015; Hansen and Bendtsen, 2014), and isopycnal transport of organic
matter could then supply organic nitrogen from the shelf-edge zone. Both the
nitrification and isopycnal supply of organic material, thus, potentially
provide new nitrogen to the shallow area, and this confuses the concept of
nitrate-based new versus regenerated production here. However, nitrification
in the euphotic zone would be based on regenerated production and, therefore,
we consider PP to be regenerated production in areas without detectable
nitrate in the water column.</p>
      <p id="d1e6198">Recycling of organic matter above the shallow shelf could, thus, be
maintained by regenerated organic matter in the water column or sediment, and
we analysed whether this was in accordance with estimated carbon and nitrogen
pools. The high biomass in the shallow area, indicated by chlorophyll
concentrations of <inline-formula><mml:math id="M468" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>–4 mg chl m<inline-formula><mml:math id="M469" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the bottom layer, would
rapidly consume a regenerated pool of inorganic nitrogen. The regenerated
cycling could, in principle, originate from the winter concentration of
nitrate of <inline-formula><mml:math id="M470" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> mmol DIN m<inline-formula><mml:math id="M471" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the area (Pätsch and
Kühn, 2008). The nitrate distribution in the shallow area indicates a
large denitrification ranging within 0–4 mmol DIN m<inline-formula><mml:math id="M472" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 4c), and
this would correspond to a pool of more than <inline-formula><mml:math id="M473" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> mmol DIN m<inline-formula><mml:math id="M474" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
available for establishing the phytoplankton biomass. Denitrification rates
in the sediment of 0.02–0.1 mmol N m<inline-formula><mml:math id="M475" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M476" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> have been observed
at the Dogger Bank between May and August (Fan et al., 2015), and such high
rates could explain the indicated nitrate sink. Assuming a Redfield
<inline-formula><mml:math id="M477" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> molar ratio of 6.6 and a <inline-formula><mml:math id="M478" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">chlorophyll</mml:mi></mml:mrow></mml:math></inline-formula> ratio of
1 mg C/50 mg chl, this would equal <inline-formula><mml:math id="M479" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> mg chl m<inline-formula><mml:math id="M480" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; i.e.<?pagebreak page7328?> it
would be in general accordance with the observed concentrations of <inline-formula><mml:math id="M481" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M482" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> mg chl m<inline-formula><mml:math id="M483" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the surface and bottom layers, respectively.
Relatively low oxygen concentrations in the bottom layer also suggested an
active bacterial respiration (Fig. 2c) to be occurring here. Thus,
regenerated production could be maintained and explained by the recycling of
an initial nutrient pool from early spring.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Photosynthetic parameters and PP</title>
      <p id="d1e6390">Estimates of PP based on photosynthetic parameters from
<inline-formula><mml:math id="M484" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> incubations and in situ conditions of light and chlorophyll
rely on several critical assumptions, including the values used for
photosynthetic parameters, the distribution of chlorophyll, light conditions, and nutrient–carbon relationships. Photosynthetic parameters from individual
incubation experiments were well described by the PP model (i.e. PP described
by the terms in the integrals in Eq. (3), where parameter values are taken
from incubations; see Fig. S2 for examples of incubation data), so uncertainty
is mainly related to the spatial and temporal variability in these
parameters. Photosynthetic parameters are bulk parameters describing the
physiological response of the phytoplankton community as a whole to a given a
photon flux. Thus, both algae composition and actual fitness of the cells
contribute to the observed range of these parameters.</p>
      <p id="d1e6405">The photosynthetic parameters represent the conditions of the phytoplankton
community at the time of sampling. However, these may vary during the day
(Richardson et al., 2016) or during different light conditions (e.g.
photoinhibition). Thus, PP calculations based on spatial and temporal
averaging of the photosynthetic parameters from the surface and SCM (cf.
Table 1) may result in a more representative PP than obtained from
photosynthetic parameters obtained from a single PP incubation.</p>
      <p id="d1e6408">The values reported here (Table 1) for photosynthetic parameters are
comparable with those found in previous studies in the North Sea (e.g. Weston
et al., 2005). The variability in the photosynthetic parameters, e.g. the
uncertainty of the surface value of <inline-formula><mml:math id="M485" display="inline"><mml:mrow><mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mo>max⁡</mml:mo><mml:mi>B</mml:mi></mml:msubsup><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math id="M486" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mo>±</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> %, implies a corresponding uncertainty in PP. Thus, using a common
set of photosynthetic parameters implies an uncertainty even within this
relatively small study area, and similar limitations would probably apply to
other PP estimates for the North Sea area. These considerations illustrate
that a better understanding of the distributions of photosynthetic parameters
and the factors underlying these distributions is a prerequisite for improved
estimates of PP on regional and larger scales. Given the uncertainties
related to the determination of the absolute rate of PP at individual
stations, we believe the most robust manner by which to compare PP and NP
over our study area is to use constant (average) values for photosynthetic
parameters for all stations.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Nutrient fluxes and NP at the shelf-edge zone</title>
      <p id="d1e6446">The largest vertical nitrate fluxes of up to <inline-formula><mml:math id="M487" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> mmol N m<inline-formula><mml:math id="M488" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M489" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> were restricted to the area above the shelf
edge where increased mixing in the bottom layer intersected the nutricline
within the euphotic zone. Large nitrate fluxes have been observed along the
European shelf where tidally induced (Sharples et al., 2001; located in the
English Channel) or wind-induced mixing (Williams et al., 2013; Celtic Sea)
leads to daily averaged vertical fluxes of 1–2 mmol N m<inline-formula><mml:math id="M490" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M491" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
Significantly larger fluxes have also been observed above steep bathymetric
gradients (Tweddle et al., 2013). Wind and tidal mixing may also provide
energy for intensified mixing along the northeastern shelf edge in the North
Sea, although the present study did not resolve the specific cause for
increased mixing. Shelf-edge zones are dynamic areas where cross-shelf
exchange may occur due to many different dynamic processes (Huthnance, 1995;
Brink, 2012).</p>
      <p id="d1e6507">Mixing associated with wind and tides (e.g. Burchard and Rippeth, 2009) as
well as breaking internal waves (Sharples et al., 2007, 2009) has been shown
to be important for vertical nutrient fluxes in shelf areas. The specific
physical processes behind increased turbulent mixing cannot be identified
from the present data set. Measurements on the time series station at the
shelf edge showed that increased mixing occurred in phase with the tidal
energy input but also that additional energy sources likely contributed to
the increased mixing, e.g. energy from non-tidal currents. Short-term
variability associated with advection of ambient water masses was also
observed. This could possibly be related to sub-mesoscale eddies or other
transport processes occurring below the pycnocline. The time series station
T2 at Tr4 showed an important feature where mixing associated with the bottom
boundary layer increased and intersected the bottom of the euphotic zone.
Thus, the combined effect from a deep nutricline and increased mixing
provides a mechanism for increased diapycnal nutrient fluxes along the shelf edge.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p id="d1e6512">Sketch of conditions across the shelf-edge zone during summer. The
largest <inline-formula><mml:math id="M492" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios are found above the shelf-edge zone where the nutricline
(<inline-formula><mml:math id="M493" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) comes into contact with increased mixing near the bottom.
Deep waters are characterized by high nitrate concentration whereas surface
water and water above the shallow North Sea (NS) are nitrate depleted.</p></caption>
          <?xmltex \igopts{width=213.395669pt}?><graphic xlink:href="https://bg.copernicus.org/articles/15/7315/2018/bg-15-7315-2018-f09.png"/>

        </fig>

      <p id="d1e6543">Other processes may be important on the northeastern shelf edge due to the
large in- and outflow of Atlantic water masses. It is interesting to note
that the deepening of the nutricline from the open areas towards the shelf edge mirrors the slope of the pycnocline. Via the thermal wind equations, the slope of the pycnocline
implies an increased eastward baroclinic
velocity component with depth, in accordance with the general cyclonic
circulation in the area. Thus, a deepening of the nutricline can potentially be
explained as a dynamic response to a shelf-edge current transporting Atlantic
water into the area.</p>
      <p id="d1e6547">The conditions across the shelf edge observed during the stratified summer
season may, therefore, be considered as a stable quasi-stationary system
where mixing at the shelf edge, associated with a deep nutricline and
nutrient-rich bottom currents, provides nutrients to the euphotic zone
stimulating localized new production in this area (Fig. 9).<?pagebreak page7329?> Isopycnal mixing
may provide organic matter for increased regenerated production above the
nitrate-depleted shallow shelf area and also, together with upwelling along
the Norwegian coast, provide fresh organic material to the euphotic zone off
the shelf edge towards Norway. Thus, the tendency towards increased
chlorophyll concentrations and PP on either side of the shelf edge might be
explained as being a result of the gradual build-up of biomass as nutrients
are transported away from the shelf-edge region by isopycnal mixing.
Alternatively, the tendency to low values above the shelf edge could also be
explained by a larger grazing pressure above the shelf edge. Thus, a full
explanation of the tendency to low chlorophyll and PP above the shelf-edge
area cannot be determined from these data.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Vertical nutrient fluxes in the euphotic zone</title>
      <p id="d1e6556">The position of the SCM was closely related to the depth of the nutricline
(e.g. Figs. 3 and 6) and located in the middle of the euphotic zone (average
nutricline depth from all stations was <inline-formula><mml:math id="M494" display="inline"><mml:mrow><mml:mn mathvariant="normal">29.1</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">9.7</mml:mn></mml:mrow></mml:math></inline-formula> m; <inline-formula><mml:math id="M495" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">83</mml:mn></mml:mrow></mml:math></inline-formula>). The
maximum nitrate flux was found at depth levels between 3.4 above and 23.1 m
below the nutricline. However, on average, it was located <inline-formula><mml:math id="M496" display="inline"><mml:mrow><mml:mn mathvariant="normal">6.4</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">7.7</mml:mn></mml:mrow></mml:math></inline-formula> m
(<inline-formula><mml:math id="M497" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">73</mml:mn></mml:mrow></mml:math></inline-formula>) below the nutricline depth. Thus, the maximum nitrate flux was
within the euphotic zone but, in general, significantly below the SCM
(Fig. 3). This implies that internal recycling from below the SCM towards the
surface of regenerated nitrogen is necessary for maintaining the
phytoplankton biomass in the upper layer. Considering the relatively low
vertical mixing rates around the SCM (e.g. a turbulent diffusion coefficient
of <inline-formula><mml:math id="M498" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M499" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M500" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> implies a timescale of <inline-formula><mml:math id="M501" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> weeks for mixing across a 10 m thick layer; Fig. 5), this indicates that
other transport processes within the euphotic zone are important in this
area. One possible mechanism could be diel vertical migration of plankton.
Raven and Richardson (1984) showed the potential for diel vertical migration
as an efficient strategy for phytoplankton to get access to both nutrients
and light. Such a strategy might be particularly beneficial for phytoplankton
in the low-mixing zone in the pycnocline north of the shelf edge (e.g.
Fig. 5d at <inline-formula><mml:math id="M502" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> m depth north of 57.4<inline-formula><mml:math id="M503" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N), where the vertical
diffusion coefficient is below <inline-formula><mml:math id="M504" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M505" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M506" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in a
<inline-formula><mml:math id="M507" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> m deep layer. Applying a typical swimming speed for some
dinophytes of <inline-formula><mml:math id="M508" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> m day<inline-formula><mml:math id="M509" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> across a 10 m deep layer in such a
region implies a Peclet number <inline-formula><mml:math id="M510" display="inline"><mml:mrow><mml:mo>≫</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>; thus, diel vertical migration is a
potential additional nitrogen transport although this cannot be documented
from our data.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <title>Nutrient fluxes north of the shelf edge</title>
      <p id="d1e6766">Nutrient fluxes and NP increased close to the Norwegian coast (Figs. 7, S3).
This was in accordance with chlorophyll estimates (Hu et al., 2012) based on
daily images from the MODIS-Aqua satellite: a large algal bloom was observed
6 July (not shown) and covered the area off the southernmost part of Norway.
A satellite image from 20 July (Fig. 1a) showed increased chlorophyll
concentrations near the Norwegian coast, and colder sea surface temperatures
along the coast also indicated influence from upwelling of subsurface water
masses (Fig. 1b). Although our observations were made more than 12 nautical
miles from the coast, the increased chlorophyll and PP values at Tr1 and Tr4
are likely related to these features. A tendency to a thicker chlorophyll
layer around the SCM and a deeper nutricline at Tr4 and Tr5 also indicates
increased production and supply of nutrients near the coast. Mixing processes
along the Norwegian shelf edge may, therefore, similarly contribute to NP in
the area.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <?pagebreak page7330?><p id="d1e6776">Relatively high PP and chlorophyll concentrations of
476 mg C m<inline-formula><mml:math id="M511" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M512" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and 30 mg chl m<inline-formula><mml:math id="M513" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively,
characterized the stratified northeastern North Sea in July 2016. The
greatest values were found above the shallow shelf and near the Norwegian
coast. Turbulence measurements showed maximum dissipation rates of TKE in the
benthic boundary layer above the shallow shelf area and increased mixing
above the shelf-edge zone, whereas very low vertical mixing rates
characterized the deeper open area. Chlorophyll was concentrated in a
subsurface chlorophyll maximum located near the nutricline and, on average,
about 6 m above the depth of the maximum vertical nitrate flux in the deeper
area north of the shelf edge. Chlorophyll was concentrated in the bottom
layer above the shallow and nitrate-depleted shelf area. The nutricline was
located significantly deeper above the shelf-edge area (depth <inline-formula><mml:math id="M514" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula>–130 m) than in deeper water columns. Significant NP was found above the
shelf edge where, at some stations, relatively large nitrate fluxes with more
than 0.5 mmol N m<inline-formula><mml:math id="M515" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M516" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> implied <inline-formula><mml:math id="M517" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios above 0.10.
In contrast, very low nutrient fluxes characterized the open area above the
Norwegian Trench (<inline-formula><mml:math id="M518" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> ratios <inline-formula><mml:math id="M519" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.02). This localized NP along the shelf
edge potentially represents an important key to understanding temporal
variability in the distribution of organisms (diversity), biological
production, and ecosystem structure in this productive area.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e6875">Data are archived at ICES (<uri>http://www.ices.dk/</uri>, last
access date: 7 December 2018).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e6881">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/bg-15-7315-2018-supplement" xlink:title="pdf">https://doi.org/10.5194/bg-15-7315-2018-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p id="d1e6890">Measurements of primary production and turbulence were carried out by KR and
JB, respectively, and both analysed the data and prepared the paper.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e6896">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e6902">We thank the captain and crew on-board R/V <italic>Dana</italic> for very helpful
assistance and support during the cruise and Eik Ehlert Britch for technical
support. Erik Askov Mousing carried out most of the PP incubations. This
study was supported by funding for ship time by the Danish Centre for Marine
Research. The Carlsberg foundation provided support for the turbulence
instrument (CF15-0301). The Villum foundation provided support for the cruise
and analysis of the measurements. Analyses were supported by Danish National
Science Foundation via its support of the Center for Macroecology, Evolution,
and Climate (grant no. DNRF96). Satellite-derived PAR and Chl data were
obtained from the NASA Goddard Space Flight Center, Ocean Ecology Laboratory,
Ocean Biology Processing Group (2014) MODIS-Aqua Ocean Color Data (<ext-link xlink:href="https://doi.org/10.5067/AQUA/MODIS/L3M/PAR/2018" ext-link-type="DOI">10.5067/AQUA/MODIS/L3M/PAR/2018</ext-link> and <ext-link xlink:href="https://doi.org/10.5067/AQUA/MODIS/L3M/CHL/2018" ext-link-type="DOI">10.5067/AQUA/MODIS/L3M/CHL/2018</ext-link>) (last access: 5 October 2018). The
paper benefitted from comments by two anonymous reviewers.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: Emilio Marañón<?xmltex \hack{\newline}?> Reviewed by:
two anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>Bendtsen, J., Gustafsson, K. E., Söderkvist, J., and Hansen, J. L. S.:
Ventilation of bottom water in the North Sea – Baltic Sea transition zone,
J. Marine Syst., 75, 138–149, <ext-link xlink:href="https://doi.org/10.1016/j.jmarsys.2008.08.006" ext-link-type="DOI">10.1016/j.jmarsys.2008.08.006</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>Bendtsen, J., Hilligsøe, K. M., Hansen, J. L. S., and Richardson, K.:
Analysis of remineralisation, lability, temperature sensitivity and
structural composition of organic matter from the upper ocean, Prog.
Oceanogr., 130, 125–145, <ext-link xlink:href="https://doi.org/10.1016/j.pocean.2014.10.009" ext-link-type="DOI">10.1016/j.pocean.2014.10.009</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>Bouffard, D. and Boegman, L.: A diapycnal diffusivity model for stratified
environmental flows, Dynam. Atmos. Oceans, 61–62, 14–34,
<ext-link xlink:href="https://doi.org/10.1016/j.dynatmoce.2013.02.002" ext-link-type="DOI">10.1016/j.dynatmoce.2013.02.002</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>Brink, K. H.: Cross-shelf exchange, Annu. Rev. Mar. Sci., 8, 59–78,
<ext-link xlink:href="https://doi.org/10.1146/annurev-marine-010814-015717" ext-link-type="DOI">10.1146/annurev-marine-010814-015717</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>
Burchard, H. and Rippeth, T.: Generation of bulk shear spikes in shallow
stratified tidal seas, J. Phys. Oceanogr., 39, 969–985, 2009.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>Capuzzo, E., Lynam, C. P., Barry, J., Stephens, D., Forster, R. M.,
Greenwood, N., McQuatters-Gollop, A., Silva, T., van Leeuwen, S. M.,
Engelhard, G. H.: A decline in primary production in the North Sea over
25 years, associated with reductions in zooplankton abundance and fish stock
recruitment, Glob. Change Biol., 24, e352–e364, <ext-link xlink:href="https://doi.org/10.1111/gcb.13916" ext-link-type="DOI">10.1111/gcb.13916</ext-link>,
2018.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>
Clark, D. R., Rees, A. P., and Joint, I.: Ammonium regeneration and
nitrification rates in the oligotrophic Atlantic Ocean: Implications for new
production estimates, Limnol. Oceanogr., 53, 52–62, 2008.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>
Danielssen, D. S., Edler, L., Fonselius, S., Hernroth, L., Ostrowski, M.,
Svendsen, E., and Talpsepp, L.: Oceanographic variability in the Skagerrak
and Northern Kattegat, May–June, 1990, ICES J. Mar. Sci., 54, 753–773,
1990.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>
Dugdale, R. C. and Goering, J. J.: Uptake of new and regenerated forms of
nitrogen in primary productivity, Limnol. Oceanogr., 12, 196–206, 1967.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>
Egbert, G. D. and Erofeeva, S. Y.: Efficient inverse modeling of barotropic
ocean tides, J. Atmos. Ocean. Tech., 19, 183–204, 2002.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>
Eppley, R. W. and Peterson, B. J.: Particulate organic matter flux and
planktonic new production in the deep ocean, Nature, 282, 677–680, 1979.</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>Fan, H., Bolhuis, H., and Stal, J.: Drivers of the dynamics of diazotrophs
and denitrifiers in North Sea bottom waters and sediments, Front. Microbiol.,
6, 738, <ext-link xlink:href="https://doi.org/10.3389/fmicb.2015.00738" ext-link-type="DOI">10.3389/fmicb.2015.00738</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>
Fawcett, S. E., Ward, B. B., Lomas, M. W., and Sigman, D. M.: Vertical
decoupling of nitrate assimilation and nitrification in the Sargasso Sea,
Deep-Sea Res. Pt. I, 103, 64–72, 2015.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>Fernand, L., Weston, K., Morris, T., Greenwood, N., Brown, J., and Jickells,
T.: The contribution of the deep chlorophyll maximum to primary production in
a seasonally stratified shelf sea, the North Sea, Biogeochemistry, 113,
153–166, <ext-link xlink:href="https://doi.org/10.1007/s10533-013-9831-7" ext-link-type="DOI">10.1007/s10533-013-9831-7</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>
From, N., Richardson, K., Mousing, E. A., and Jensen, P. E.: Removing the
light history signal from normalized variable fluorescence (Fv/Fm)
measurements on marine phytoplankton, Limnol. Oceanogr.-Meth., 12, 776–783,
2014.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>Frouin, R., McPherson, J., Ueyoshi, K., and Franz, B. A.: A time series of
photosynthetically available radiation at the ocean surface from SeaWiFS and
MODIS data, Proc. SPIE, 8525, 852519, <ext-link xlink:href="https://doi.org/10.1117/12.981264" ext-link-type="DOI">10.1117/12.981264</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib17"><label>17</label><mixed-citation>
Gattuso, J.-P., Frankignoulle, M., and Wollast, R.: Carbon and carbonate
metabolism in coastal aquatic ecosystems, Annual Reviews of Ecological
Systems, 29, 405–434, 1998.</mixed-citation></ref>
      <ref id="bib1.bib18"><label>18</label><mixed-citation>
Grasshoff, K., Erhardt, M., and Kremling, K.: Methods of seawater analysis,
2. Revision, Verlag Chemie, Weinheim, 1983.</mixed-citation></ref>
      <ref id="bib1.bib19"><label>19</label><mixed-citation>
Hansen, J. L. S. and Bendtsen, J.: Seasonal bottom water respiration in the
North Sea–Baltic Sea transition zone: rates, temperature<?pagebreak page7331?> sensitivity and
sources of organic material, Mar. Ecol.-Prog. Ser., 499, 19–34, 2014.</mixed-citation></ref>
      <ref id="bib1.bib20"><label>20</label><mixed-citation>
Hickman, A. E., Moore, C. M., Sharples, J., Lucas, M. I., Tilstone, G. H.,
Krivtsov, V., Holligan, P. M.: Primary production and nitrate uptake within
the seasonal thermocline of a stratified shelf sea, Mar. Ecol.-Prog. Ser.,
463, 39–57, 2012.</mixed-citation></ref>
      <ref id="bib1.bib21"><label>21</label><mixed-citation>Holt, J. and Proctor, R.: The seasonal circulation and volume transport on
the northwest European continental shelf: A fine-resolution model study, J.
Geophys. Res., 113, C06021, <ext-link xlink:href="https://doi.org/10.1029/2006JC004034" ext-link-type="DOI">10.1029/2006JC004034</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bib22"><label>22</label><mixed-citation>
Holt, J., Wakelin, S., Lowe, J., and Tinker, J.: The potential impacts of
climate change on the hydrography of the northwest European continental
shelf, Prog. Oceanogr., 86, 361–379, 2010.</mixed-citation></ref>
      <ref id="bib1.bib23"><label>23</label><mixed-citation>Holt, J., Butenschön, M., Wakelin, S. L., Artioli, Y., and Allen, J. I.:
Oceanic controls on the primary production of the northwest European
continental shelf: model experiments under recent past conditions and a
potential future scenario, Biogeosciences, 9, 97–117,
<ext-link xlink:href="https://doi.org/10.5194/bg-9-97-2012" ext-link-type="DOI">10.5194/bg-9-97-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib24"><label>24</label><mixed-citation>Hu, C., Lee, Z., and Franz, B. A.: Chlorophyll-a algorithms for oligotrophic
oceans: A novel approach based on three-band reflectance difference, J.
Geophys. Res., 117, C01011, <ext-link xlink:href="https://doi.org/10.1029/2011JC007395" ext-link-type="DOI">10.1029/2011JC007395</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib25"><label>25</label><mixed-citation>
Huthnance, J. M.: Circulation, exchange and water masses at the ocean margin:
the role of physical processes at the shelf edge, Prog. Oceanogr., 35,
353–431, 1995.</mixed-citation></ref>
      <ref id="bib1.bib26"><label>26</label><mixed-citation>
ICES: Report of the ICES Advisory Committee 2008, Book 6: North Sea,
International Council for the Exploration of the Sea (ICES), 2008.</mixed-citation></ref>
      <ref id="bib1.bib27"><label>27</label><mixed-citation>
IOC, SCOR and IAPSO: The international thermodynamic equation of seawater –
2010: Calculation and use of thermodynamic properties, Intergovernmental
Oceanographic Commission, Manuals and Guides No. 56, UNESCO (English),
196 pp., 2010.</mixed-citation></ref>
      <ref id="bib1.bib28"><label>28</label><mixed-citation>
Kumari, B.: Comparison of high performance liquid chromatography and
fluorometri ocean colour pigments, J. Indian Soc. Remot., 33, 541–546, 2005.</mixed-citation></ref>
      <ref id="bib1.bib29"><label>29</label><mixed-citation>
Lueck, R.: Calculating the rate of dissipation of turbulent kinetic energy,
RSI Technical Note 028, Rockland Scientific International, Victoria, Canada,
18 pp., 2016.</mixed-citation></ref>
      <ref id="bib1.bib30"><label>30</label><mixed-citation>McKee, D., Röttgers, R., Neukermans, G., Calzado, V. S., Trees, C.,
Ampolo-Rella, M., Neil, C., and Cunningham, A.: Impact of measurement
uncertainties on determination of chlorophyll-specific absorption coefficient
for marine phytoplankton, J. Geophys. Res.-Oceans, 119–925, 9013–9025,
<ext-link xlink:href="https://doi.org/10.1002/2014JC009909" ext-link-type="DOI">10.1002/2014JC009909</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib31"><label>31</label><mixed-citation>
Osborn, T. R.: Estimate of the local rate of vertical diffusion from
dissipation measurements, J. Phys. Oceanogr., 10, 83–89, 1980.</mixed-citation></ref>
      <ref id="bib1.bib32"><label>32</label><mixed-citation>
Pätsch, J. and Kühn, W.: Nitrogen and carbon cycling in the North Sea
and exchange with the North Atlantic – A model study. Part I. Nitrogen
budget and fluxes, Cont. Shelf Res., 28, 767–787, 2008.</mixed-citation></ref>
      <ref id="bib1.bib33"><label>33</label><mixed-citation>
Pätsch, J., Burchard, H., Dieterich, C., Gräwe, U., Gröger, M.,
Mathis, M., Kapitza, H., Bersch, M., Moll, A., Pohlmann, T., Su, J.,
Ho-Hagemann, Ha T. M., Schulz, A. Elizalde, A., and Eden, C.: An evaluation
of the North Sea circulation in global and regional models relevant for
ecosystem simulations, Ocean Model., 116, 70–95, 2017.</mixed-citation></ref>
      <ref id="bib1.bib34"><label>34</label><mixed-citation>
Platt, T., Gallegos, C. L., and Harrison, W. G.: Photoinhibation of
photosynthesis in natural assemblages of marine phytoplankton, J. Mar. Res.,
38, 687–701, 1980.</mixed-citation></ref>
      <ref id="bib1.bib35"><label>35</label><mixed-citation>
Press, W. H., Teukolsky, S. A., Vetterling, W. T., and Flannery, B. P.:
Numerical Recipes in FORTRAN: The Art of Scientific Computing, Press
Syndicate of the University of Cambridge, USA, 1992.</mixed-citation></ref>
      <ref id="bib1.bib36"><label>36</label><mixed-citation>
Raven, J. A. and Richardson, K.: Dinophyte flagella: a cost-benefit analysis,
New Phytol., 98, 259–276, 1984.</mixed-citation></ref>
      <ref id="bib1.bib37"><label>37</label><mixed-citation>
Redfield, A. C., Ketchum, B. H., and Richards, F. A.: The influence of
organisms on the composition of sea water, in: The Sea, edited by: Hill, M.
N., Wiley-Interscience, New Yourk, 26–77, 1963.</mixed-citation></ref>
      <ref id="bib1.bib38"><label>38</label><mixed-citation>
Richardson, K., Visser, A. W., and Pedersen, F. B.: Subsurface phytoplankton
blooms fuel pelagic production in the North Sea, J. Plankton Res., 22,
1663–1671, 2000.</mixed-citation></ref>
      <ref id="bib1.bib39"><label>39</label><mixed-citation>Richardson, K., Bendtsen, J., Kragh, T., and Mousing, E. A.: Constraining the
distribution of photosynthetic parameters in the global ocean, Front. Mar.
Sci., 3, 269, <ext-link xlink:href="https://doi.org/10.3389/fmars.2016.00269" ext-link-type="DOI">10.3389/fmars.2016.00269</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bib40"><label>40</label><mixed-citation>Røed, L. P. and Fossum, I.: Mean and eddy motion in the Skagerrak/northern
North Sea: insight from a numerical model, Ocean Dynam., 54, 197–220,
<ext-link xlink:href="https://doi.org/10.1007/s10236-003-0076-1" ext-link-type="DOI">10.1007/s10236-003-0076-1</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib41"><label>41</label><mixed-citation>Scott, B. E., Sharples, J., Ross, O. N., Wang, J., Pierce, G. J., and
Camphuysen, C. J.: Sub-surface hotspots in shallow seas: fine-scale limited
locations of top predator foraging habitat indicated by tidal mixing and
sub-surface chlorophyll, Mar. Ecol.-Prog. Ser., 408, 207–226,
<ext-link xlink:href="https://doi.org/10.3354/meps08552" ext-link-type="DOI">10.3354/meps08552</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib42"><label>42</label><mixed-citation>
Sharples, J., Moore, C. M., Rippeth, T. P., Holligan, P. M., Hydes, D. J.,
Fisher, N. R., and Simpson, J. H.: Phytoplankton distribution and survival in
the thermocline, Limnol. Oceanogr., 46, 486–496, 2001.</mixed-citation></ref>
      <ref id="bib1.bib43"><label>43</label><mixed-citation>
Sharples, J., Tweddle, J. F., Green, J. A. M., Palmer, M. R., Kim, Y.-N.,
Hickman, A. E., Holligan, P. M., Moore, C. M., Rippeth, T. P., Simpson, J.
H., and Krivtsov, V.: Spring-Neap Modulation of Internal Tide Mixing and
Vertical Nitrate Fluxes at a Shelf Edge in Summer, Limnol. Oceanogr., 52,
1735–1747, 2007.</mixed-citation></ref>
      <ref id="bib1.bib44"><label>44</label><mixed-citation>Sharples, J., Moore, C. M., Hickman, A. E., Holligan, P. M., Tweddle, J. F.,
Palmer, M. R., and Simpson, J. H.: Internal tidal mixing as a control on
continental margin ecosystems, Geophys. Res. Lett., 36, L23603,
<ext-link xlink:href="https://doi.org/10.1029/2009GL040683" ext-link-type="DOI">10.1029/2009GL040683</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bib45"><label>45</label><mixed-citation>
Sharples, J., Ellis, J. R., Nolan, G., and Scott, B. E.: Fishing and the
oceanography of a stratified shelf sea, Progr. Oceanogr., 117, 130–139,
2013.</mixed-citation></ref>
      <ref id="bib1.bib46"><label>46</label><mixed-citation>Shih, L. H., Koseff, J. R., Ivey, G. N., and Ferziger, J. H.;
Parameterization of turbulent fluxes and scales using homogeneous sheared
stably stratified turbulence simulations, J. Fluid. Mech., 525, 193–214,
<ext-link xlink:href="https://doi.org/10.1017/S0022112004002587" ext-link-type="DOI">10.1017/S0022112004002587</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bib47"><label>47</label><mixed-citation>
Simpson, J. and Sharples, J.: Introduction to the physical and biological
oceanography of shelf seas, Cambridge, Cambridge University Press, 424 pp.,
2012.</mixed-citation></ref>
      <ref id="bib1.bib48"><label>48</label><mixed-citation>
Skogen, M. D. and Moll, A.: Interannual variability of the North Sea primary
production: comparison from two model studies, Cont. Shelf Res., 20,
129–151, 2000.</mixed-citation></ref>
      <ref id="bib1.bib49"><label>49</label><mixed-citation>
Tweddle, J. F., Sharples, J., Palmer, M. R., Davidson, K., and McNeill, S.:
Enhanced nutrient fluxes at the shelf sea seasonal thermocline caused by
stratified flow over a bank, Progr. Oceanogr., 117, 37–47, 2013.</mixed-citation></ref>
      <ref id="bib1.bib50"><label>50</label><mixed-citation>Volk, T. and Hoffert, M. I.: Ocean carbon pumps: Analysis of relative
strengths and efficiencies in ocean-driven atmospheric <inline-formula><mml:math id="M520" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, in: The
Carbon Cycle and Atmospheric <inline-formula><mml:math id="M521" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>: Natural Variations Archean to
Present, Geophysical Monograph Series, Vol. 32.<?pagebreak page7332?> edited by: Sundquist, E. T.
and Broecker, W. S., AGU, Washington, DC, 99–110, 1985.</mixed-citation></ref>
      <ref id="bib1.bib51"><label>51</label><mixed-citation>
Webb, W. L., Newton, M., and Starr, D.: Carbon dioxide exchange of Alnus
rubra. A mathematical model, Oecologia, 17, 281–291, 1974.</mixed-citation></ref>
      <ref id="bib1.bib52"><label>52</label><mixed-citation>
Weston, K., Fernand, L., Mills, D. K., Delahunty, R., and Brown, J.: Primary
production in the deep chlorophyll maximum of the central North Sea, J.
Plankton Res., 27, 909–922, 2005.</mixed-citation></ref>
      <ref id="bib1.bib53"><label>53</label><mixed-citation>Williams, C., Sharples, J., Mahaffey, C., and Rippeth, T.: Wind-driven
nutrient pulses to the subsurface chlorophyll maximum in seasonally
stratified shelf seas, Geophys. Res. Lett., 40, 5467–5472,
<ext-link xlink:href="https://doi.org/10.1002/2013GL058171" ext-link-type="DOI">10.1002/2013GL058171</ext-link>, 2013.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib54"><label>54</label><mixed-citation>Winther, N. G. and Johannessen, J. A.: North Sea circulation: Atlantic inflow
and its destination, J. Geophys. Res., 111, C12018, <ext-link xlink:href="https://doi.org/10.1029/2005JC003310" ext-link-type="DOI">10.1029/2005JC003310</ext-link>,
2006.</mixed-citation></ref>
      <ref id="bib1.bib55"><label>55</label><mixed-citation>
Wolk, F., Yamazaki, H., Seuront, L., and Lueck, R. G.: A new free-fall
profiler for measuring bio-physical microstructure, J. Atmos. Ocean. Tech.,
19, 780–793, 2002.</mixed-citation></ref>
      <ref id="bib1.bib56"><label>56</label><mixed-citation>
Yool, A., Martin, A. P., Fernández, C., and Clark, D. R.: The
significance of nitrification for oceanic new production, Nature, 447,
999–1002, 2007.</mixed-citation></ref>
      <ref id="bib1.bib57"><label>57</label><mixed-citation>
Zehr, J. P. and Kudela, R. M.: Nitrogen cycle of the open ocean: From genes
to ecosystems, Annu. Rev. Mar. Sci., 3, 197–225, 2011.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>Turbulence measurements suggest high rates of new production over the shelf edge in the northeastern North Sea during summer</article-title-html>
<abstract-html><p>New production, i.e. that driven by allochthonous nutrient inputs, is the
only form of primary production that can lead to net increases in organic
material and is, therefore, important for understanding energy flow in marine
ecosystems. The spatial distribution of new production is generally, however,
not well known. Using data collected in July 2016, we analyse the potential
for vertical mixing to support new production in the upper layers of the
northeastern portion of the North Sea. Relatively large (up to  &gt; 0.5&thinsp;mmol&thinsp;N&thinsp;m<sup>−2</sup>&thinsp;d<sup>−1</sup>) nitrate fluxes due to turbulent vertical
mixing into the euphotic zone were found at some stations over the shelf
edge, while low values ( &lt;  0.1&thinsp;mmol&thinsp;N&thinsp;m<sup>−2</sup>&thinsp;d<sup>−1</sup>) were found in
the deeper open area north of the shelf edge. The low vertical mixing rates
(dissipation rates of turbulent kinetic energy below 10<sup>−8</sup>&thinsp;W&thinsp;kg<sup>−1</sup>,
corresponding to vertical turbulent diffusion coefficients of
10<sup>−6</sup>–10<sup>−5</sup>&thinsp;m<sup>2</sup>&thinsp;s<sup>−1</sup>) implied <i>f</i>
ratios of  &lt; 0.02 in the open waters
north of the shelf edge. In the shallow ( &lt; 50&thinsp;m) southern and central part
of the study area, inorganic nutrients were low and nitrate undetectable,
suggesting negligible new production here, despite relatively high
concentrations of chlorophyll <i>a</i> being found in the bottom layer. Thus, high
rates of new production seem to be concentrated around the shelf-edge zone
and in association with localized features exhibiting enhanced vertical
mixing. We find that the nutricline depth is significantly deeper at the
shelf edge and interference with increased mixing in this deeper depth range
can explain the increased diapycnal nitrate fluxes. Overall, this suggests
that the shelf-edge zone may be the major nutrient supplier to the euphotic
zone in this area during the period of summer stratification.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Bendtsen, J., Gustafsson, K. E., Söderkvist, J., and Hansen, J. L. S.:
Ventilation of bottom water in the North Sea – Baltic Sea transition zone,
J. Marine Syst., 75, 138–149, <a href="https://doi.org/10.1016/j.jmarsys.2008.08.006" target="_blank">https://doi.org/10.1016/j.jmarsys.2008.08.006</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Bendtsen, J., Hilligsøe, K. M., Hansen, J. L. S., and Richardson, K.:
Analysis of remineralisation, lability, temperature sensitivity and
structural composition of organic matter from the upper ocean, Prog.
Oceanogr., 130, 125–145, <a href="https://doi.org/10.1016/j.pocean.2014.10.009" target="_blank">https://doi.org/10.1016/j.pocean.2014.10.009</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Bouffard, D. and Boegman, L.: A diapycnal diffusivity model for stratified
environmental flows, Dynam. Atmos. Oceans, 61–62, 14–34,
<a href="https://doi.org/10.1016/j.dynatmoce.2013.02.002" target="_blank">https://doi.org/10.1016/j.dynatmoce.2013.02.002</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Brink, K. H.: Cross-shelf exchange, Annu. Rev. Mar. Sci., 8, 59–78,
<a href="https://doi.org/10.1146/annurev-marine-010814-015717" target="_blank">https://doi.org/10.1146/annurev-marine-010814-015717</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Burchard, H. and Rippeth, T.: Generation of bulk shear spikes in shallow
stratified tidal seas, J. Phys. Oceanogr., 39, 969–985, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
Capuzzo, E., Lynam, C. P., Barry, J., Stephens, D., Forster, R. M.,
Greenwood, N., McQuatters-Gollop, A., Silva, T., van Leeuwen, S. M.,
Engelhard, G. H.: A decline in primary production in the North Sea over
25 years, associated with reductions in zooplankton abundance and fish stock
recruitment, Glob. Change Biol., 24, e352–e364, <a href="https://doi.org/10.1111/gcb.13916" target="_blank">https://doi.org/10.1111/gcb.13916</a>,
2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
Clark, D. R., Rees, A. P., and Joint, I.: Ammonium regeneration and
nitrification rates in the oligotrophic Atlantic Ocean: Implications for new
production estimates, Limnol. Oceanogr., 53, 52–62, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
Danielssen, D. S., Edler, L., Fonselius, S., Hernroth, L., Ostrowski, M.,
Svendsen, E., and Talpsepp, L.: Oceanographic variability in the Skagerrak
and Northern Kattegat, May–June, 1990, ICES J. Mar. Sci., 54, 753–773,
1990.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Dugdale, R. C. and Goering, J. J.: Uptake of new and regenerated forms of
nitrogen in primary productivity, Limnol. Oceanogr., 12, 196–206, 1967.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Egbert, G. D. and Erofeeva, S. Y.: Efficient inverse modeling of barotropic
ocean tides, J. Atmos. Ocean. Tech., 19, 183–204, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Eppley, R. W. and Peterson, B. J.: Particulate organic matter flux and
planktonic new production in the deep ocean, Nature, 282, 677–680, 1979.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Fan, H., Bolhuis, H., and Stal, J.: Drivers of the dynamics of diazotrophs
and denitrifiers in North Sea bottom waters and sediments, Front. Microbiol.,
6, 738, <a href="https://doi.org/10.3389/fmicb.2015.00738" target="_blank">https://doi.org/10.3389/fmicb.2015.00738</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Fawcett, S. E., Ward, B. B., Lomas, M. W., and Sigman, D. M.: Vertical
decoupling of nitrate assimilation and nitrification in the Sargasso Sea,
Deep-Sea Res. Pt. I, 103, 64–72, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Fernand, L., Weston, K., Morris, T., Greenwood, N., Brown, J., and Jickells,
T.: The contribution of the deep chlorophyll maximum to primary production in
a seasonally stratified shelf sea, the North Sea, Biogeochemistry, 113,
153–166, <a href="https://doi.org/10.1007/s10533-013-9831-7" target="_blank">https://doi.org/10.1007/s10533-013-9831-7</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
From, N., Richardson, K., Mousing, E. A., and Jensen, P. E.: Removing the
light history signal from normalized variable fluorescence (Fv/Fm)
measurements on marine phytoplankton, Limnol. Oceanogr.-Meth., 12, 776–783,
2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Frouin, R., McPherson, J., Ueyoshi, K., and Franz, B. A.: A time series of
photosynthetically available radiation at the ocean surface from SeaWiFS and
MODIS data, Proc. SPIE, 8525, 852519, <a href="https://doi.org/10.1117/12.981264" target="_blank">https://doi.org/10.1117/12.981264</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>17</label><mixed-citation>
Gattuso, J.-P., Frankignoulle, M., and Wollast, R.: Carbon and carbonate
metabolism in coastal aquatic ecosystems, Annual Reviews of Ecological
Systems, 29, 405–434, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>18</label><mixed-citation>
Grasshoff, K., Erhardt, M., and Kremling, K.: Methods of seawater analysis,
2. Revision, Verlag Chemie, Weinheim, 1983.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>19</label><mixed-citation>
Hansen, J. L. S. and Bendtsen, J.: Seasonal bottom water respiration in the
North Sea–Baltic Sea transition zone: rates, temperature sensitivity and
sources of organic material, Mar. Ecol.-Prog. Ser., 499, 19–34, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>20</label><mixed-citation>
Hickman, A. E., Moore, C. M., Sharples, J., Lucas, M. I., Tilstone, G. H.,
Krivtsov, V., Holligan, P. M.: Primary production and nitrate uptake within
the seasonal thermocline of a stratified shelf sea, Mar. Ecol.-Prog. Ser.,
463, 39–57, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>21</label><mixed-citation>
Holt, J. and Proctor, R.: The seasonal circulation and volume transport on
the northwest European continental shelf: A fine-resolution model study, J.
Geophys. Res., 113, C06021, <a href="https://doi.org/10.1029/2006JC004034" target="_blank">https://doi.org/10.1029/2006JC004034</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>22</label><mixed-citation>
Holt, J., Wakelin, S., Lowe, J., and Tinker, J.: The potential impacts of
climate change on the hydrography of the northwest European continental
shelf, Prog. Oceanogr., 86, 361–379, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>23</label><mixed-citation>
Holt, J., Butenschön, M., Wakelin, S. L., Artioli, Y., and Allen, J. I.:
Oceanic controls on the primary production of the northwest European
continental shelf: model experiments under recent past conditions and a
potential future scenario, Biogeosciences, 9, 97–117,
<a href="https://doi.org/10.5194/bg-9-97-2012" target="_blank">https://doi.org/10.5194/bg-9-97-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>24</label><mixed-citation>
Hu, C., Lee, Z., and Franz, B. A.: Chlorophyll-a algorithms for oligotrophic
oceans: A novel approach based on three-band reflectance difference, J.
Geophys. Res., 117, C01011, <a href="https://doi.org/10.1029/2011JC007395" target="_blank">https://doi.org/10.1029/2011JC007395</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>25</label><mixed-citation>
Huthnance, J. M.: Circulation, exchange and water masses at the ocean margin:
the role of physical processes at the shelf edge, Prog. Oceanogr., 35,
353–431, 1995.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>26</label><mixed-citation>
ICES: Report of the ICES Advisory Committee 2008, Book 6: North Sea,
International Council for the Exploration of the Sea (ICES), 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>27</label><mixed-citation>
IOC, SCOR and IAPSO: The international thermodynamic equation of seawater –
2010: Calculation and use of thermodynamic properties, Intergovernmental
Oceanographic Commission, Manuals and Guides No. 56, UNESCO (English),
196 pp., 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>28</label><mixed-citation>
Kumari, B.: Comparison of high performance liquid chromatography and
fluorometri ocean colour pigments, J. Indian Soc. Remot., 33, 541–546, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>29</label><mixed-citation>
Lueck, R.: Calculating the rate of dissipation of turbulent kinetic energy,
RSI Technical Note 028, Rockland Scientific International, Victoria, Canada,
18 pp., 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>30</label><mixed-citation>
McKee, D., Röttgers, R., Neukermans, G., Calzado, V. S., Trees, C.,
Ampolo-Rella, M., Neil, C., and Cunningham, A.: Impact of measurement
uncertainties on determination of chlorophyll-specific absorption coefficient
for marine phytoplankton, J. Geophys. Res.-Oceans, 119–925, 9013–9025,
<a href="https://doi.org/10.1002/2014JC009909" target="_blank">https://doi.org/10.1002/2014JC009909</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>31</label><mixed-citation>
Osborn, T. R.: Estimate of the local rate of vertical diffusion from
dissipation measurements, J. Phys. Oceanogr., 10, 83–89, 1980.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>32</label><mixed-citation>
Pätsch, J. and Kühn, W.: Nitrogen and carbon cycling in the North Sea
and exchange with the North Atlantic – A model study. Part I. Nitrogen
budget and fluxes, Cont. Shelf Res., 28, 767–787, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>33</label><mixed-citation>
Pätsch, J., Burchard, H., Dieterich, C., Gräwe, U., Gröger, M.,
Mathis, M., Kapitza, H., Bersch, M., Moll, A., Pohlmann, T., Su, J.,
Ho-Hagemann, Ha T. M., Schulz, A. Elizalde, A., and Eden, C.: An evaluation
of the North Sea circulation in global and regional models relevant for
ecosystem simulations, Ocean Model., 116, 70–95, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>34</label><mixed-citation>
Platt, T., Gallegos, C. L., and Harrison, W. G.: Photoinhibation of
photosynthesis in natural assemblages of marine phytoplankton, J. Mar. Res.,
38, 687–701, 1980.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>35</label><mixed-citation>
Press, W. H., Teukolsky, S. A., Vetterling, W. T., and Flannery, B. P.:
Numerical Recipes in FORTRAN: The Art of Scientific Computing, Press
Syndicate of the University of Cambridge, USA, 1992.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>36</label><mixed-citation>
Raven, J. A. and Richardson, K.: Dinophyte flagella: a cost-benefit analysis,
New Phytol., 98, 259–276, 1984.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>37</label><mixed-citation>
Redfield, A. C., Ketchum, B. H., and Richards, F. A.: The influence of
organisms on the composition of sea water, in: The Sea, edited by: Hill, M.
N., Wiley-Interscience, New Yourk, 26–77, 1963.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>38</label><mixed-citation>
Richardson, K., Visser, A. W., and Pedersen, F. B.: Subsurface phytoplankton
blooms fuel pelagic production in the North Sea, J. Plankton Res., 22,
1663–1671, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>39</label><mixed-citation>
Richardson, K., Bendtsen, J., Kragh, T., and Mousing, E. A.: Constraining the
distribution of photosynthetic parameters in the global ocean, Front. Mar.
Sci., 3, 269, <a href="https://doi.org/10.3389/fmars.2016.00269" target="_blank">https://doi.org/10.3389/fmars.2016.00269</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>40</label><mixed-citation>
Røed, L. P. and Fossum, I.: Mean and eddy motion in the Skagerrak/northern
North Sea: insight from a numerical model, Ocean Dynam., 54, 197–220,
<a href="https://doi.org/10.1007/s10236-003-0076-1" target="_blank">https://doi.org/10.1007/s10236-003-0076-1</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>41</label><mixed-citation>
Scott, B. E., Sharples, J., Ross, O. N., Wang, J., Pierce, G. J., and
Camphuysen, C. J.: Sub-surface hotspots in shallow seas: fine-scale limited
locations of top predator foraging habitat indicated by tidal mixing and
sub-surface chlorophyll, Mar. Ecol.-Prog. Ser., 408, 207–226,
<a href="https://doi.org/10.3354/meps08552" target="_blank">https://doi.org/10.3354/meps08552</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>42</label><mixed-citation>
Sharples, J., Moore, C. M., Rippeth, T. P., Holligan, P. M., Hydes, D. J.,
Fisher, N. R., and Simpson, J. H.: Phytoplankton distribution and survival in
the thermocline, Limnol. Oceanogr., 46, 486–496, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>43</label><mixed-citation>
Sharples, J., Tweddle, J. F., Green, J. A. M., Palmer, M. R., Kim, Y.-N.,
Hickman, A. E., Holligan, P. M., Moore, C. M., Rippeth, T. P., Simpson, J.
H., and Krivtsov, V.: Spring-Neap Modulation of Internal Tide Mixing and
Vertical Nitrate Fluxes at a Shelf Edge in Summer, Limnol. Oceanogr., 52,
1735–1747, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>44</label><mixed-citation>
Sharples, J., Moore, C. M., Hickman, A. E., Holligan, P. M., Tweddle, J. F.,
Palmer, M. R., and Simpson, J. H.: Internal tidal mixing as a control on
continental margin ecosystems, Geophys. Res. Lett., 36, L23603,
<a href="https://doi.org/10.1029/2009GL040683" target="_blank">https://doi.org/10.1029/2009GL040683</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>45</label><mixed-citation>
Sharples, J., Ellis, J. R., Nolan, G., and Scott, B. E.: Fishing and the
oceanography of a stratified shelf sea, Progr. Oceanogr., 117, 130–139,
2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>46</label><mixed-citation>
Shih, L. H., Koseff, J. R., Ivey, G. N., and Ferziger, J. H.;
Parameterization of turbulent fluxes and scales using homogeneous sheared
stably stratified turbulence simulations, J. Fluid. Mech., 525, 193–214,
<a href="https://doi.org/10.1017/S0022112004002587" target="_blank">https://doi.org/10.1017/S0022112004002587</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>47</label><mixed-citation>
Simpson, J. and Sharples, J.: Introduction to the physical and biological
oceanography of shelf seas, Cambridge, Cambridge University Press, 424 pp.,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>48</label><mixed-citation>
Skogen, M. D. and Moll, A.: Interannual variability of the North Sea primary
production: comparison from two model studies, Cont. Shelf Res., 20,
129–151, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>49</label><mixed-citation>
Tweddle, J. F., Sharples, J., Palmer, M. R., Davidson, K., and McNeill, S.:
Enhanced nutrient fluxes at the shelf sea seasonal thermocline caused by
stratified flow over a bank, Progr. Oceanogr., 117, 37–47, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>50</label><mixed-citation>
Volk, T. and Hoffert, M. I.: Ocean carbon pumps: Analysis of relative
strengths and efficiencies in ocean-driven atmospheric CO<sub>2</sub>, in: The
Carbon Cycle and Atmospheric CO<sub>2</sub>: Natural Variations Archean to
Present, Geophysical Monograph Series, Vol. 32. edited by: Sundquist, E. T.
and Broecker, W. S., AGU, Washington, DC, 99–110, 1985.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>51</label><mixed-citation>
Webb, W. L., Newton, M., and Starr, D.: Carbon dioxide exchange of Alnus
rubra. A mathematical model, Oecologia, 17, 281–291, 1974.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>52</label><mixed-citation>
Weston, K., Fernand, L., Mills, D. K., Delahunty, R., and Brown, J.: Primary
production in the deep chlorophyll maximum of the central North Sea, J.
Plankton Res., 27, 909–922, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>53</label><mixed-citation>
Williams, C., Sharples, J., Mahaffey, C., and Rippeth, T.: Wind-driven
nutrient pulses to the subsurface chlorophyll maximum in seasonally
stratified shelf seas, Geophys. Res. Lett., 40, 5467–5472,
<a href="https://doi.org/10.1002/2013GL058171" target="_blank">https://doi.org/10.1002/2013GL058171</a>, 2013.

</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>54</label><mixed-citation>
Winther, N. G. and Johannessen, J. A.: North Sea circulation: Atlantic inflow
and its destination, J. Geophys. Res., 111, C12018, <a href="https://doi.org/10.1029/2005JC003310" target="_blank">https://doi.org/10.1029/2005JC003310</a>,
2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>55</label><mixed-citation>
Wolk, F., Yamazaki, H., Seuront, L., and Lueck, R. G.: A new free-fall
profiler for measuring bio-physical microstructure, J. Atmos. Ocean. Tech.,
19, 780–793, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>56</label><mixed-citation>
Yool, A., Martin, A. P., Fernández, C., and Clark, D. R.: The
significance of nitrification for oceanic new production, Nature, 447,
999–1002, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>57</label><mixed-citation>
Zehr, J. P. and Kudela, R. M.: Nitrogen cycle of the open ocean: From genes
to ecosystems, Annu. Rev. Mar. Sci., 3, 197–225, 2011.
</mixed-citation></ref-html>--></article>
