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  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-16-847-2019</article-id><title-group><article-title>Tropical tree height and crown allometries for the Barro Colorado
Nature Monument, Panama: a comparison of alternative hierarchical models
incorporating interspecific variation<?xmltex \hack{\break}?> in relation to life
history traits</article-title><alt-title>Tropical tree height and crown allometries for the Barro Colorado
Nature
Monument</alt-title>
      </title-group><?xmltex \runningtitle{Tropical tree height and crown allometries for the Barro Colorado
Nature
Monument}?><?xmltex \runningauthor{I. Mart\'{\i}nez Cano et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Martínez Cano</surname><given-names>Isabel</given-names></name>
          <email>isamcano@gmail.com</email>
        <ext-link>https://orcid.org/0000-0003-4205-8596</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Muller-Landau</surname><given-names>Helene C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3526-9021</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Wright</surname><given-names>S. Joseph</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4260-5676</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Bohlman</surname><given-names>Stephanie A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Pacala</surname><given-names>Stephen W.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Ecology and Evolutionary Biology, Princeton University,
Princeton, NJ 08544, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Smithsonian Tropical Research Institute, 0843-03092, Balboa,
Ancón, Panama</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>School of Forest Resources and Conservation, University of Florida,
Gainesville, FL 32611, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Isabel Martínez Cano (isamcano@gmail.com)</corresp></author-notes><pub-date><day>20</day><month>February</month><year>2019</year></pub-date>
      
      <volume>16</volume>
      <issue>4</issue>
      <fpage>847</fpage><lpage>862</lpage>
      <history>
        <date date-type="received"><day>30</day><month>June</month><year>2018</year></date>
           <date date-type="rev-request"><day>12</day><month>July</month><year>2018</year></date>
           <date date-type="rev-recd"><day>8</day><month>January</month><year>2019</year></date>
           <date date-type="accepted"><day>21</day><month>January</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 Isabel Martínez Cano et al.</copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019.html">This article is available from https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019.pdf</self-uri>
      <abstract>
    <p id="d1e132">Tree allometric relationships are widely employed for estimating forest biomass
and production and are basic building blocks of dynamic vegetation models.
In tropical forests, allometric relationships are often modeled by fitting
scale-invariant power functions to pooled data from multiple species, an
approach that fails to capture changes in scaling during ontogeny and
physical limits to maximum tree size and that ignores interspecific
differences in allometry. Here, we analyzed allometric relationships of tree
height (9884 individuals) and crown area (2425) with trunk diameter for 162
species from the Barro Colorado Nature Monument, Panama. We fit
nonlinear, hierarchical models informed by species traits –
wood density, mean sapling growth, or sapling mortality – and assessed the
performance of three alternative functional forms: the scale-invariant power
function and the saturating Weibull and generalized Michaelis–Menten (gMM)
functions. The relationship of tree height with trunk diameter was best fit
by a saturating gMM model in which variation in allometric parameters was
related to interspecific differences in sapling growth rates, a measure of
regeneration light demand. Light-demanding species attained taller heights at
comparatively smaller diameters as juveniles and had shorter asymptotic
heights at larger diameters as adults. The relationship of crown area with
trunk diameter was best fit by a power function model incorporating a weak
positive relationship between crown area and species-specific wood density.
The use of saturating functional forms and the incorporation of functional
traits in tree allometric models is a promising approach for improving estimates
of forest biomass and productivity. Our results provide an improved basis for
parameterizing tropical plant functional types in vegetation models.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e142">Allometric scaling describes how plant morphology and performance vary as a
function of size, patterns that are ultimately due to size-dependent
physical constraints and selective pressures (Niklas, 1994). Allometric
relationships show high predictive ability and are widely employed for
estimating forest carbon biomass and primary production from forest inventory
data (e.g., Chave et al., 2014; Goodman et al., 2014). Allometric
functions constitute building blocks of more complex, mechanistic forest
models, including the vegetation modules of state-of-the art Earth system
models (e.g., Weng et al., 2015). These functions
provide a basic template for modeling carbon allocation and tree growth
(Pacala et al., 1996), and differences in allometric
parameters can be used to represent different species or plant functional
types (PFTs, Prentice et al., 1992). However, allometric relationships of
tropical trees remain poorly documented when compared to temperate and
boreal forest ecosystems (Houghton,<?pagebreak page848?> 2005; Hunter et al., 2013), even
though tropical forests account for a disproportionate share of forest
carbon stocks and fluxes (<inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> % of the terrestrial
carbon sink and <inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">33</mml:mn></mml:mrow></mml:math></inline-formula> % of annual NPP; Chapin, 2011; Pan et
al., 2013). Alternative choices of tree allometric equations contribute to
the wide variability in biomass and productivity estimates in the
literature and to the large uncertainty surrounding the response of these
ecosystems to warmer and dryer climates (Bonan, 2008).</p>
      <p id="d1e165">Power functions are widely used to describe allometric scaling of tree
height and crown area with trunk diameter, despite the known limitations of
their underlying assumption of scale invariance of tree morphology
(Shinozaki et al., 1964a, b; Niklas, 1994). The adoption of power
function scaling is particularly problematic at both extremes of the tree
size range (Enquist and Bentley, 2012). Power functions fail to
capture the allometries of the smallest and largest individuals, generally
underestimating dimensions of seedlings and saplings and overestimating the
size of large trees (e.g., Fayolle et al., 2016; Ledo et al., 2016). This
suggests the need for alternative functional forms to represent life history
heterogeneity and the physical constraints that set maximum tree sizes
(Koch et al., 2004; Bonan, 2008; Goodman et al., 2014; Mensah et al.,
2018). Indeed, the inclusion of a saturating relationship for tree scaling
has proved important in reproducing realistic dynamics in vegetation models
(Weng et al., 2015).</p>
      <p id="d1e168">Allometric studies of tropical trees have highlighted differences in growth
and morphology that define distinct life history strategies (Clark and
Clark, 1992; Poorter et al., 2006). These differences contribute to species
coexistence and play a key role in successional trajectories (Wright,
2002; Chazdon, 2014; Falster et al., 2017). Approaches pooling data across
species inherently fail to recognize species heterogeneity in allometric
scaling and limit the potential to identify and define plant functional
groups. Pooling data across species also tends to over-represent locally
abundant species, unless appropriate methods like hierarchical models are
employed to account for unbalanced sampling. Species differ systematically
in allometric relationships, suggesting that these differences reflect
underlying interspecific variation in life history, physiology, morphology,
and/or phylogeny (Westoby et al., 2002; Adler et al., 2014). Hierarchical
approaches based on functional traits can provide a useful approach for
capturing this interspecific variation in tree allometry (Dietze et al.,
2008; Iida et al., 2011). Several studies have found regeneration light
requirements and/or wood density to be related to tree height and/or crown
size across species, suggesting that these are good candidates for inclusion
in a hierarchical model (Poorter et al., 2006; Wright et al., 2010; Iida
et al., 2012, 2014; Loubota Panzou et al., 2018).</p>
      <p id="d1e171">Here, we present a quantitative approach for characterizing allometric
relationships for tree height and crown area and their interspecific
variation in tropical forests and apply it to a large dataset for a single
site. Our overall objective was to develop models informed by functional
traits to capture interspecific variation in the allometric scaling of
tropical trees and provide a better template for the estimation and modeling
of forest biomass and ecosystem fluxes. We address three specific questions:
(i) how is interspecific variability in allometric scaling of tree height
and crown area in this forest related to tree species functional traits, in
particular wood density and measures of shade tolerance? (ii) How do power
functions compare with various asymptotic functions in representing these
species-specific allometric relationships? (iii) How does the choice of
alternative tree height scaling functions affect the estimation of
aboveground biomass? To answer these questions, we fitted allometric models
whose parameters were related to species-specific functional traits under a
Bayesian hierarchical framework, taking advantage of long-term, high-quality
data from Barro Colorado, Panama. This approach allowed us to
characterize different sources of variability, from individual species to
the community level, and to simultaneously assess the relative merits of
different functional forms.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Study site</title>
      <p id="d1e185">The Barro Colorado Nature Monument is a protected area in central Panama
consisting of Barro Colorado Island (BCI) and peninsulas on the surrounding
mainland (Leigh, 1999). The vegetation is tropical moist forest. Annual
rainfall averages 2657 mm (years 1926 to 2017), with a 4-month dry season
from approximately mid-December to mid-April (Paton, 2018). The forest
dynamics plot on BCI is a 50 ha area (1000 m <inline-formula><mml:math id="M3" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 m) in which
all tree stems with trunk diameter of at least 1 cm have been measured,
mapped, tagged, and identified to species in regular censuses since the early
1980s (Hubbell, 1983; Condit, 1998; Leigh, 1999; Hubbell et al., 1999, 2005).
The plot is mostly old-growth forest of 400 years or older (Piperno, 1990),
with the exception of a small area of secondary forest that is <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">127</mml:mn></mml:mrow></mml:math></inline-formula>–137 years old in the central part of the northern edge of the plot
(Mascaro et al., 2011). The Gigante peninsula on the nearby mainland is
covered by secondary forest ranging from 100 to perhaps 300 years old
(Denslow and Guzman, 2000; Wright et al., 2011).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Tree measurements</title>
      <p id="d1e211">The allometric data consist of measurements of trunk diameter at 1.3 m
height or above buttresses, <inline-formula><mml:math id="M5" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (cm), tree height, <inline-formula><mml:math id="M6" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> (m), and crown area, <inline-formula><mml:math id="M7" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula>
(m<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>). We used a compilation of seven datasets collected in the BCI 50 ha plot and one dataset from old-growth forests on the adjacent Gigante
peninsula (see Table S1 in Section S1 of the Supplement for further details). The datasets cover different
size classes and combine measurements made with different,<?pagebreak page849?> albeit standard,
methods. Depending on the dataset and tree size, tree heights were measured
with a telescoping pole (smaller trees only), with a laser rangefinder using
the sine or tangent method (Larjavaara and Muller-Landau,
2013), or from the difference between a model obtained from photogrammetry
(of the ground) and that obtained from airborne lidar (only fully sun-exposed trees).
Crown areas were from ground-based measurements of crown radii or from
delimiting fully sun-exposed crowns in high-resolution aerial photos. We
included only species with at least five individual measurements of either
<inline-formula><mml:math id="M9" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> or <inline-formula><mml:math id="M10" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula> and those that have data for the three trait covariates (see below), which
resulted in a pool of 162 species, including 9884 trees for height
allometries and 2425 trees for crown area allometries.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Species traits</title>
      <p id="d1e265">We considered three species-level covariates to assess whether functional
traits can explain interspecific variability in allometric scaling: the
structural trait of wood density and two demographically based indicators
of shade tolerance. Species-specific wood density values (dry matter weight
per unit of fresh volume; g cm<inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> – technically wood specific gravity
(Williamson and Wiemann, 2010) – were based on measurements
taken in central Panama (Wright et al., 2010).
The two shade-tolerance indicators were the rates of mean sapling diameter
growth and of sapling mortality estimated by Condit et
al. (2006) on BCI using the 5-year census data between 1982 and 2005.
Sapling relative growth rates (% yr<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were based on diameter
increments for individuals between 10 and 49 mm in diameter at the initial
census. Annual mortality rates (% yr<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were also based on the
monitoring of tagged individuals but included saplings with diameters
between 10 and 99 mm (Condit et al., 2006). For both
growth and mortality, the rates are weighted averages of means for each
census interval, weighting by the number of records in a census interval.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Statistical analyses</title>
      <p id="d1e319">We adopted a hierarchical Bayesian (HB) approach to analyze allometric
relationships of tree height and crown area with trunk diameter (Dietze
et al., 2008; Price et al., 2009; Iida et al., 2011). The HB approach
provides several advantages over classic analytical frameworks
(Cressie et al., 2009; Gelman, 2014), starting
with the easy accommodation of complex data structures and process models.
In the current context, the HB framework allowed us to simultaneously
estimate (i) community-level allometries that best represent an average
species in the community, (ii) species-specific allometries that capture
interspecific variation, and (iii) general relationships of species-specific
allometric parameters to functional traits. The estimation of general
relationships is improved by properly weighting species-specific estimates,
whereas species-level estimates for rare species benefit from borrowing
strength from the community-level relationship. The latter aspect reduces
the negative impact of outlying observations and allows inference for
data-poor species, of which there are many in hyperdiverse ecosystems like
tropical forests. Another important advantage of the HB approach is that it
can easily handle nonlinear models, allowing us to extend the analysis
beyond power functions (which are typically fitted through linear
regressions on log-transformed data; Mascaro et al., 2014)
to other functional relationships. Finally, the HB approach allowed us to assess the
relationships of functional traits to tree allometries by explicitly
modeling species-specific allometric parameters as functions of species
traits.</p>
<sec id="Ch1.S2.SS4.SSS1">
  <title>Model specification</title>
      <p id="d1e327">Bayesian hierarchical models have three components (Cressie
et al., 2009): (i) a data model linking model predictions with observed data,
(ii) a process model providing a mathematical description of the mechanisms
underlying the patterns of interest, and (iii) a parameter model that
incorporates prior information about parameter values available before the
analysis.</p>
      <p id="d1e330">For the data model, we assumed a Gaussian likelihood for the natural
logarithm of the response variable, <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:msub><mml:mi>y</mml:mi><mml:mrow><mml:mi mathvariant="normal">s</mml:mi><mml:mfenced close="]" open="["><mml:mi>i</mml:mi></mml:mfenced></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, which was
either tree height (<inline-formula><mml:math id="M15" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>, m) or crown area (<inline-formula><mml:math id="M16" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula>, m<inline-formula><mml:math id="M17" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>) for each individual <inline-formula><mml:math id="M18" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> in
species <inline-formula><mml:math id="M19" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula>:
              <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M20" display="block"><mml:mrow><mml:mi>log⁡</mml:mi><mml:msub><mml:mi>y</mml:mi><mml:mrow><mml:mi mathvariant="normal">s</mml:mi><mml:mfenced close="]" open="["><mml:mi>i</mml:mi></mml:mfenced></mml:mrow></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>∼</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Gaussian</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mfenced open="[" close="]"><mml:mi>i</mml:mi></mml:mfenced></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">Θ</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            the where the process model, <inline-formula><mml:math id="M21" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M22" display="inline"><mml:mo lspace="0mm">⋅</mml:mo></mml:math></inline-formula>), predicts expected natural log
tree height or crown area from observed trunk diameter, <inline-formula><mml:math id="M23" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (cm), and the
vector of species-specific parameters, <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">Θ</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo mathvariant="italic">{</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:msub><mml:mi>b</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo mathvariant="italic">}</mml:mo></mml:mrow></mml:math></inline-formula>. The standard
deviation <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> captures deviations between model predictions and
observed data.</p>
      <?pagebreak page850?><p id="d1e506">We considered three functional forms of varying complexity for the process
model, representing alternative hypotheses about allometric scaling. Our
simplest model was the power function model, which presumes scale invariance
of tree morphology with trunk diameter. We also tested two models that are
nonlinear in the logarithmic scale, thereby allowing for a curvature in
scaling (Thomas, 1996): a generalized Michaelis–Menten (gMM) and a rescaled Weibull function (the cumulative Weibull distribution
rescaled to extend from 0 to <inline-formula><mml:math id="M26" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> rather than 0 to 1). We chose the two
saturating functions because they are always nondecreasing and allow for
finite constraints on maximum tree dimensions, with both equations featuring
a saturating relationship between tree dimensions and trunk size. The
equations for all three models are as follows:
<?xmltex \hack{\allowdisplaybreaks}?>

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M27" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E2"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">Power</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mi>a</mml:mi><mml:msup><mml:mi>D</mml:mi><mml:mi>b</mml:mi></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtext>Generalized Michaelis–Menten (gMM)</mml:mtext><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>a</mml:mi><mml:msup><mml:mi>D</mml:mi><mml:mi>b</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:mi>k</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mi>D</mml:mi><mml:mi>b</mml:mi></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E4"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">Weibull</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mi>a</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>-</mml:mo><mml:mi>b</mml:mi><mml:msup><mml:mi>D</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              Preliminary analyses evaluated additional saturating functional forms,
including the Gompertz and logistic forms, and found that they produced inferior
fits, in agreement with previous studies of tree height and crown area
(Feldpausch et al., 2011; Banin et al., 2012; Ledo et al., 2016).</p>
      <p id="d1e623">We evaluated the effect of functional traits by adding an additional layer
to the process model to accommodate interspecific differences in model
parameters. Each allometric parameter <inline-formula><mml:math id="M28" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> (i.e., <inline-formula><mml:math id="M29" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M30" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>, or <inline-formula><mml:math id="M31" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> in
Eqs. 2, 3, or 4) was modeled as a univariate linear function of one of the three
traits, <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (i.e., wood density, sapling mortality rate, or sapling
growth rate):
              <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M33" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>∼</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Gaussian</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub><mml:msub><mml:mi>T</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            Deviations from the linear relationships were assumed to follow a normal
distribution with a community-level standard deviation <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
Each covariate was centered and scaled to mean zero and unit variance before
the analysis. As a consequence, the intercept of the linear relationship
between parameter values and species-specific traits, <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
provides an estimate of the across-species mean, while the slope <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> gives the expected effect of an increase of 1 standard
deviation for each covariate (Gelman, 2014). We compared models
including individual functional traits with models lacking covariates, that
is, models in which variation among allometric scaling parameters is assumed
to be random (i.e., equivalent to setting <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to zero). We
refer to models incorporating relationships between allometric parameters
and species traits as “trait models”. Because each allometric parameter was
a linear function of a trait, the trait models had twice the number of
community-level parameters as corresponding models lacking covariates. Our
trait models each featured a single trait (all parameters in a trait model
depended on the same trait).</p>
      <p id="d1e756">The model was completed with the specification of uninformative
prior distributions in the parameter model. We
assumed independent normal priors for the community-level parameters (<inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">β</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, with means of 0 and variances of 100. We also assumed that the
species-level parameters in <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">Θ</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were independently normally distributed
(assuming a multivariate normal instead and thus allowing for correlations
among <inline-formula><mml:math id="M40" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M41" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M42" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> did not significantly alter the main results). We
assumed half-Cauchy prior distributions with a scale parameter set to 2.5 for
the observation variance (<inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and for the across-species
variances of the parameters of the allometric models (<inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.The model ignored measurement errors in trunk diameter and in trait
data.</p>
</sec>
<sec id="Ch1.S2.SS4.SSS2">
  <title>Model selection and inference</title>
      <p id="d1e843">For both tree height and crown area, model selection and inference involved
the assessment of 12 different model formulations resulting from all
combinations of the three process models (power, generalized
Michaelis–Menten, and Weibull), and the four possibilities for functional
traits (wood density, sapling growth, sapling mortality, or the “no trait”
models featuring only random variability in allometric parameters across
species). Alternative models were fitted using Markov chain Monte Carlo (MCMC) methods (Gelman, 2014). Inference was based on 5000
posterior samples following 10 000 burn-in iterations for four parallel
chains, which allowed us to check convergence using the potential scale
reduction statistic together with estimates of effective sample size
(Gelman and Rubin, 1992). Based on the posterior distribution of
the deviance (specifically, the expectation of the log pointwise predictive
density – ELP), we calculated the Watanabe (2013) information
criterion (WAIC) to rank alternative models in terms of a balance between
predictive ability and model complexity (Hooten and Hobbs,
2015). Models were fitted in Stan (Stan Development Team, 2016), a
statistical software package to conduct Bayesian analyses (code provided in
Sect. S2 in the Supplement).</p>
      <p id="d1e846">Posterior samples were used for characterizing the distributions of parameters
and to project estimation uncertainty to model-based estimates. We report
central, 90 % posterior intervals both for parameter estimates and for
model-based predictions of tree height and crown area for selected trunk
diameter values. We further provide unbiased community-level models for
estimating (untransformed) height and crown area from trunk diameter. These
models were corrected for the bias introduced by back transformation of
log-transformed predictions; the correction involves multiplying predicted
values by <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mi mathvariant="normal">exp</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the residual standard deviation of the fitted model for
the log-transformed variable (Sprugel, 1983).</p>
</sec>
<sec id="Ch1.S2.SS4.SSS3">
  <title>Implications for biomass estimates</title>
      <p id="d1e887">Finally, we derived estimates of oven-dry aboveground biomass, AGB (kilograms dry
mass), from measured trunk diameters and our estimated heights. We used a
general tropical tree allometric model that assumed a linear scaling of AGB with
tree height (Eq. 5 in Chave et al., 2014):
              <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M47" display="block"><mml:mrow><mml:mi mathvariant="normal">AGB</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.0559</mml:mn><mml:mo>×</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:msup><mml:mi>D</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>H</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is wood density (g cm<inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M50" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (cm) is trunk diameter, and
<inline-formula><mml:math id="M51" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> (m) is tree height. We first compared individual tree AGB estimates based
on measured tree heights with the corresponding AGB estimated using
community-level, model-based predictions of tree height from alternative
functional forms (i.e., power vs. gMM) and evaluated how these differences
varied with tree diameter. Then, we estimated total AGB in the 50 ha plot by
summing individual tree estimates of AGB, using individual <inline-formula><mml:math id="M52" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>
measurements from the 2010 census (Hubbell et al., 2005) and
model-estimated heights. In the plot-level analyses, we explored the impact
of species-specific differences in height allometric scaling by comparing
AGB estimates based alternatively on community- or species-level height
predictions for both power and gMM functions. For species-specific height
predictions, we used<?pagebreak page851?> fitted species-specific parameters (including species
random effects) for the 162 species included in the main analysis and
community-level predictions for other species. For those species for which
species-specific wood densities were not available, we used the average over
species for which values were available (<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5304</mml:mn></mml:mrow></mml:math></inline-formula> g cm<inline-formula><mml:math id="M54" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>;
Wright et al., 2010). We computed 90 %
credible intervals for each AGB estimate based on 5000 samples from the
posterior distributions of all parameters of the corresponding allometric
models.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
      <p id="d1e993">Trees in our dataset varied over 3 orders of magnitude in trunk diameter
(0.33–247.70 cm), 2 orders of magnitude in tree height (0.55–57.40 m),
and 5 orders of magnitude in crown area (0.0039–1404.2 m<inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The
tallest species was <italic>Dipteryx oleifera</italic> (maximum height 57.4 m), and
the largest crown area was found in <italic>Ceiba pentandra</italic> (1404 m<inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
Among big trees (<inline-formula><mml:math id="M57" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> &gt; 80 cm), <italic>Guazuma ulmifolia</italic>
presented the shortest tree (28.2 m), and <italic>Poulsenia armata</italic>
presented the smallest crown area (179 m<inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Observations were unevenly
distributed across species, largely in parallel with the variation in
abundance, with a median of 34 trees per species for tree height and 7 for
crown area and a range of 5–674 trees per species for tree height and 3–139
for crown area. The hierarchical models
accounted for this unbalanced design and provided reasonable fits in all
species for all model combinations, with no apparent pattern remaining in the
residuals (Figs. S1–S2 in the Supplement; Table 1). The goodness of fit was
high for all candidate models, with coefficients of determination (<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>)
between 0.909 and 0.943. Differences in fits resulted nonetheless in a clear
ranking among alternative models according to the WAIC (Table 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e1065">Data (points) and best-fit allometric relationships (lines) for tree
height <bold>(a)</bold> and crown area <bold>(b)</bold> in relation to trunk
diameter. In each panel, blue lines correspond to species-specific fits, and
the white line to the community-averaged model, both from the best
hierarchical model (Tables 1 and  2). The best model for tree height was
based on a generalized Michaelis–Menten function <bold>(a)</bold>, whereas the
best model for crown area included a power function <bold>(b)</bold>. Note the
log scales on all axes.</p></caption>
        <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019-f01.jpg"/>

      </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e1089">Summary of the results of the model selection procedure.
We ranked models based on Watanabe's (2013) widely applicable
information criterion (WAIC), a measure used to identify models with a good
balance between predictive power as represented by the expectation of the
log pointwise predictive density (ELP) and model complexity as represented by
the estimated effective number of parameters (pWAIC). For each model, we report
the difference in WAIC from the best model, <inline-formula><mml:math id="M60" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>WAIC. We derived model
weights, <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, based on WAIC values to aid in the interpretation of the model
selection procedure (Burnham and Anderson, 2002). Models with the lowest WAIC and with
<inline-formula><mml:math id="M62" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>WAIC &lt; 2 are highlighted in boldface.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Dependent</oasis:entry>
         <oasis:entry colname="col2">Functional</oasis:entry>
         <oasis:entry colname="col3">Covariate<inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">ELP</oasis:entry>
         <oasis:entry colname="col5">pWAIC</oasis:entry>
         <oasis:entry colname="col6">WAIC</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M66" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>WAIC</oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">variable</oasis:entry>
         <oasis:entry colname="col2">form<inline-formula><mml:math id="M68" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Tree height</oasis:entry>
         <oasis:entry colname="col2"><bold>gMM</bold></oasis:entry>
         <oasis:entry colname="col3"><bold>Growth</bold></oasis:entry>
         <oasis:entry colname="col4"><bold>2725.94</bold></oasis:entry>
         <oasis:entry colname="col5"><bold>268.69</bold></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="bold">5451.89</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"><bold>0.0</bold></oasis:entry>
         <oasis:entry colname="col8"><bold>0.92</bold></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">2723.14</oasis:entry>
         <oasis:entry colname="col5">266.07</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5446.27</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">5.6</oasis:entry>
         <oasis:entry colname="col8">0.06</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">Growth</oasis:entry>
         <oasis:entry colname="col4">2722.06</oasis:entry>
         <oasis:entry colname="col5">270.88</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5444.11</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">7.8</oasis:entry>
         <oasis:entry colname="col8">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">2720.85</oasis:entry>
         <oasis:entry colname="col5">269.53</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5441.70</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">10.2</oasis:entry>
         <oasis:entry colname="col8">0.01</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">Wood density</oasis:entry>
         <oasis:entry colname="col4">2717.91</oasis:entry>
         <oasis:entry colname="col5">266.57</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5435.81</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">16.1</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">Mortality</oasis:entry>
         <oasis:entry colname="col4">2716.73</oasis:entry>
         <oasis:entry colname="col5">267.23</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5433.46</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">18.4</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">Wood density</oasis:entry>
         <oasis:entry colname="col4">2716.68</oasis:entry>
         <oasis:entry colname="col5">270.00</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5433.36</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">18.5</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">Mortality</oasis:entry>
         <oasis:entry colname="col4">2715.88</oasis:entry>
         <oasis:entry colname="col5">269.00</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5431.77</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">20.1</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">Growth</oasis:entry>
         <oasis:entry colname="col4">2178.16</oasis:entry>
         <oasis:entry colname="col5">234.16</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4356.32</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1095.6</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">Mortality</oasis:entry>
         <oasis:entry colname="col4">2175.65</oasis:entry>
         <oasis:entry colname="col5">235.69</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4351.30</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1100.6</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">Wood density</oasis:entry>
         <oasis:entry colname="col4">2174.74</oasis:entry>
         <oasis:entry colname="col5">235.68</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4349.47</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1102.4</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">2173.15</oasis:entry>
         <oasis:entry colname="col5">235.81</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4346.31</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">1082.9</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Crown area</oasis:entry>
         <oasis:entry colname="col2"><bold>Power</bold></oasis:entry>
         <oasis:entry colname="col3"><bold>–</bold></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="bold">2076.76</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><bold>161.82</bold></oasis:entry>
         <oasis:entry colname="col6"><bold>4153.52</bold></oasis:entry>
         <oasis:entry colname="col7"><bold>0.0</bold></oasis:entry>
         <oasis:entry colname="col8"><bold>0.43</bold></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><bold>Power</bold></oasis:entry>
         <oasis:entry colname="col3"><bold>Wood density</bold></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="bold">2077.05</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><bold>161.73</bold></oasis:entry>
         <oasis:entry colname="col6"><bold>4154.10</bold></oasis:entry>
         <oasis:entry colname="col7"><bold>0.6</bold></oasis:entry>
         <oasis:entry colname="col8"><bold>0.32</bold></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">Mortality</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2077.80</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">163.30</oasis:entry>
         <oasis:entry colname="col6">4155.59</oasis:entry>
         <oasis:entry colname="col7">2.1</oasis:entry>
         <oasis:entry colname="col8">0.15</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">Growth</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2078.23</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">162.76</oasis:entry>
         <oasis:entry colname="col6">4156.46</oasis:entry>
         <oasis:entry colname="col7">2.9</oasis:entry>
         <oasis:entry colname="col8">0.10</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">Growth</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2097.17</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">156.29</oasis:entry>
         <oasis:entry colname="col6">4194.35</oasis:entry>
         <oasis:entry colname="col7">40.8</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">Wood density</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2097.29</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">155.25</oasis:entry>
         <oasis:entry colname="col6">4194.58</oasis:entry>
         <oasis:entry colname="col7">41.1</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">Mortality</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2097.88</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">154.79</oasis:entry>
         <oasis:entry colname="col6">4195.76</oasis:entry>
         <oasis:entry colname="col7">42.2</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Weibull</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2099.80</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">156.82</oasis:entry>
         <oasis:entry colname="col6">4199.61</oasis:entry>
         <oasis:entry colname="col7">46.1</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">Mortality</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2118.46</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">153.38</oasis:entry>
         <oasis:entry colname="col6">4236.93</oasis:entry>
         <oasis:entry colname="col7">83.4</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">Growth</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2119.23</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">154.60</oasis:entry>
         <oasis:entry colname="col6">4238.46</oasis:entry>
         <oasis:entry colname="col7">84.9</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2120.56</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">155.88</oasis:entry>
         <oasis:entry colname="col6">4241.12</oasis:entry>
         <oasis:entry colname="col7">87.6</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">Wood density</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2120.75</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">156.56</oasis:entry>
         <oasis:entry colname="col6">4241.50</oasis:entry>
         <oasis:entry colname="col7">88.0</oasis:entry>
         <oasis:entry colname="col8">0.00</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d1e1117"><inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> gMM refers to the generalized Michaelis–Menten.
<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> Growth refers to the log mean sapling relative growth rate,
mortality to the log mean sapling mortality rate, and wood density to the
wood specific gravity (see Methods).</p></table-wrap-foot></table-wrap>

<sec id="Ch1.S3.SS1">
  <title>Tree height allometry</title>
      <p id="d1e2116">The best tree height model combined a generalized Michaelis–Menten (gMM)
function with species-specific parameters modeled as a linear function of
sapling growth rates (Fig. 1a). At the community level, the best model for
predicting tree height, <inline-formula><mml:math id="M93" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> (m), from trunk diameter, <inline-formula><mml:math id="M94" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (cm), in the absence of
species-level covariates was
            <disp-formula id="Ch1.E7" content-type="numbered"><mml:math id="M95" display="block"><mml:mrow><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">58.0</mml:mn><mml:msup><mml:mi>D</mml:mi><mml:mn mathvariant="normal">0.73</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">21.8</mml:mn><mml:mo>+</mml:mo><mml:msup><mml:mi>D</mml:mi><mml:mn mathvariant="normal">0.73</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          This equation incorporates the bias correction for the back transformation
from log <inline-formula><mml:math id="M96" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> based on the estimate of <inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.181</mml:mn></mml:mrow></mml:math></inline-formula> [0.179,
0.183]<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>. The parameter values with their 90 % posterior central
intervals are asymptote <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">57.1</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">54.5</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">60.0</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> before bias
correction, exponent <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.73</mml:mn><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0.72</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0.75</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and half-saturation
parameter <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">21.79</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">20.70</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">22.89</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p id="d1e2294">Posterior estimates of the parameters of the best
hierarchical models for tree height and crown area allometries (see Table 1). Table entries correspond to the mean and 90 % posterior central
intervals for the community-level parameters of each allometric function
(see Eqs. 2–4 in Methods). Tree height allometry was best described by a
generalized Michaelis–Menten (gMM) model including the effect of the natural
logarithm of sapling growth rate (growth). The scaling of crown area was
best described by a power law function, with similar performance between a
model with no covariates and one with parameters varying depending on
species wood density (Table 1). Covariates were centered and scaled before
the analysis to ease comparisons of effects (natural logarithm of sapling
growth rate (% yr<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>); mean (SD) <inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.01</mml:mn></mml:mrow></mml:math></inline-formula> (0.65); wood density mean
(SD) <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.56</mml:mn></mml:mrow></mml:math></inline-formula> (0.14) g cm<inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The standard error, <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, of
the best models were 0.181 (0.179, 0.183), 0.549 (0.536, 0.563), and 0.550
(0.536, 0.562) for tree height and the two models for crown area, including wood density or no covariate,
respectively.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Functional</oasis:entry>
         <oasis:entry colname="col3">Covariate</oasis:entry>
         <oasis:entry colname="col4">Parameter</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Mean)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Slope)</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (SD)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">form</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Tree height</oasis:entry>
         <oasis:entry colname="col2">gMM</oasis:entry>
         <oasis:entry colname="col3">Growth</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M110" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">57.0 (54.5, 60.0)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.093</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.133</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.048</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">0.107 (0.082, 0.137)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M114" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">0.735 (0.718, 0.752)</oasis:entry>
         <oasis:entry colname="col6">0.037 (0.014, 0.060)</oasis:entry>
         <oasis:entry colname="col7">0.093 (0.082, 0.105)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M115" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">21.77 (20.70, 22.89)</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.80</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.81</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.79</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">4.18 (3.64, 4.80)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Crown area</oasis:entry>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">Wood density</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M119" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">0.56 (0.50, 0.63)</oasis:entry>
         <oasis:entry colname="col6">0.051 (<inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.001</mml:mn></mml:mrow></mml:math></inline-formula>, 0.105)</oasis:entry>
         <oasis:entry colname="col7">0.30 (0.26, 0.35)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M121" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">1.35 (1.31, 1.38)</oasis:entry>
         <oasis:entry colname="col6">0.011 (<inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.023</mml:mn></mml:mrow></mml:math></inline-formula>, 0.049)</oasis:entry>
         <oasis:entry colname="col7">0.15 (0.12, 0.19)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Crown area</oasis:entry>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">None</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M123" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">0.57 (0.50, 0.63)</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">0.30 (0.26, 0.35)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M124" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">1.34 (1.31, 1.38)</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">0.16 (0.12, 0.20)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e2733"><bold>(a–c)</bold> Relationships of species-specific tree height
allometry parameters with log-transformed mean sapling relative growth rate
in the best-fit hierarchical model, which incorporated the generalized
Michaelis–Menten function (Eq. 3). Points show median posterior estimates
for each species, with vertical bars indicating 90 % posterior central
intervals. The thick grey line depicts the fitted relationship across
species, and the shaded envelope encloses the 90 % posterior interval.
<bold>(d)</bold> Illustration of interspecific differences in tree height
scaling in the fitted model, with the red line showing predictions for the
lowest sapling growth rate (very high shade tolerance) and the green line showing the
highest sapling growth rate (very low shade tolerance), together with their
90 % credible intervals (dashed lines).</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019-f02.png"/>

        </fig>

      <p id="d1e2748">Individual species showed considerable variation in their height
allometries; this variation was explained to a large extent by the sapling
growth rate (Fig. 2). Parameters <inline-formula><mml:math id="M125" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M126" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> declined with sapling growth rate,
while <inline-formula><mml:math id="M127" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> increased (Fig. 2; <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.42</mml:mn></mml:mrow></mml:math></inline-formula>, 0.14, and 0.16 for relationships
of the natural logarithm of sapling relative growth rate with <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>b</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M130" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>,
respectively). As a consequence, fast-growing species attain taller heights
at small diameters but have shorter asymptotic heights compared with
slow-growing species (Fig. 2d). The second-best model included a generalized
Michaelis–Menten function and no covariates but was significantly worse in
WAIC (<inline-formula><mml:math id="M131" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>WAIC <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5.6</mml:mn></mml:mrow></mml:math></inline-formula>). The third-best model, which incorporated a
Weibull function and interspecific variation in sapling growth rates (Table 1), produced the same results qualitatively as the best model. In general,
all the saturating models (Weibull or gMM), regardless of covariate or not,
had similar expectations of the log pointwise predictive density (<inline-formula><mml:math id="M133" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>ELP &lt; 10), whereas the power function models did much worse (<inline-formula><mml:math id="M134" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>ELP &gt; 500, <inline-formula><mml:math id="M135" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>WAIC &gt; 1000).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Crown area allometry</title>
      <?pagebreak page852?><p id="d1e2851">The allometric scaling of crown area with trunk diameter showed no sign of
saturation, thus the power function model provided superior fits (Fig. 1b). At the community level, the best model for predicting crown area, <inline-formula><mml:math id="M136" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula>
(m<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>), from trunk diameter, <inline-formula><mml:math id="M138" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (cm), in the absence of information on
species-level covariates was
            <disp-formula id="Ch1.E8" content-type="numbered"><mml:math id="M139" display="block"><mml:mrow><mml:mi>C</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.66</mml:mn><mml:msup><mml:mi>D</mml:mi><mml:mn mathvariant="normal">1.34</mml:mn></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          This equation incorporates the bias correction for the back transformation
from log <inline-formula><mml:math id="M140" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula> based on <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">ν</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.549</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0.536</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0.563</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. The
parameter values with their 90 % posterior central intervals are
coefficient <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.57</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0.50</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0.63</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> before bias correction and
exponent <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.34</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">1.31</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.38</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. This model does not have an
asymptote. For the maximum trunk diameter in our dataset, <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">max</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">250</mml:mn></mml:mrow></mml:math></inline-formula> cm,
we would expect a crown area close to <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">max</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1079</mml:mn><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>[</mml:mo><mml:mn mathvariant="normal">977</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1192</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M146" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>, corresponding to a crown radius of 18.5 m. Although
the best model did not include a covariate, the model including wood density
provided a competitive fit (<inline-formula><mml:math id="M147" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>WAIC <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.6</mml:mn></mml:mrow></mml:math></inline-formula>, Table 1), with a slight
positive relationship between the intercept and wood density (Fig. 3;
<inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> and 0.01 for the relationships presented). This suggests
that species with high wood densities tend to have slightly broader crowns
at all trunk sizes.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e3089">Relationships of species-specific crown area allometry
parameters with wood density in the second-best hierarchical model, which
incorporated a power function (the best model included no covariates; Table 1). Points show median posterior estimates for each individual species, with
vertical bars indicating 90 % posterior central intervals. The thick grey
line depicts the fitted relationship across species, while the shaded
envelope encloses the 90 % posterior interval.</p></caption>
          <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>Consequences for AGB estimates</title>
      <?pagebreak page854?><p id="d1e3104">Individual tree aboveground biomass (AGB) estimates based on the
community-average power model (<inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.02</mml:mn><mml:msup><mml:mi>D</mml:mi><mml:mn mathvariant="normal">0.56</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>; Table S2) were
strongly upwardly biased for large trees relative to estimates based on
measured heights, whereas AGB estimates based on the gMM height model were
unbiased (Fig. 4). Individual-level AGB estimates calculated using tree height
predictions based on the power model exceeded those based on the gMM model
by ever larger proportions at larger trunk diameters, with an overestimate
of 10 % at <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">66</mml:mn></mml:mrow></mml:math></inline-formula> cm [52, 80]<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> that increases up to 59 % [51, 67]<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> at
<inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">250</mml:mn></mml:mrow></mml:math></inline-formula> cm (Fig. 4). This difference in individual-level AGB estimates for
large trees translated into substantial differences for whole-plot AGB.
Estimates of whole-plot AGB in trees with <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>≥</mml:mo></mml:mrow></mml:math></inline-formula> 1 cm using the
community-average power model were 12.3 % larger than those using the
better-supported community-average gMM model (283 vs. 252 Mg dry matter ha<inline-formula><mml:math id="M156" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Table 3). The incorporation of information about species identity
reduces the difference between the models, with the power model estimate
exceeding the gMM model estimate by only 4.5 % (276 vs. 264 Mg ha<inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
As expected, deviations between estimates based on the power and the gMM
models were more pronounced for larger diameter classes (Table 3).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p id="d1e3215">Posterior mean estimates (with their 90 % credible
intervals) of total aboveground biomass density (Mg dry mass ha<inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in
the 50 ha plot on Barro Colorado Island (BCI) under alternative tree height
scaling relationships. To estimate AGB, the height of each tree in the plot was
predicted based on community- or species-level allometric models for the
generalized Michaelis–Menten and power functions, together with the
height-based biomass allometry equation from Chave et
al. (2014); see methods for further details.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right" colsep="1"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry rowsep="1" namest="col2" nameend="col3" align="center" colsep="1">Community level </oasis:entry>
         <oasis:entry rowsep="1" namest="col4" nameend="col5" align="center">Species level </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Diameter class</oasis:entry>
         <oasis:entry colname="col2">Power</oasis:entry>
         <oasis:entry colname="col3">gMM</oasis:entry>
         <oasis:entry colname="col4">Power</oasis:entry>
         <oasis:entry colname="col5">gMM</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">1–10 cm</oasis:entry>
         <oasis:entry colname="col2">12.6 [12.4, 12.8]</oasis:entry>
         <oasis:entry colname="col3">12.8 [12.4, 13.2]</oasis:entry>
         <oasis:entry colname="col4">12.0 [11.9, 12.1]</oasis:entry>
         <oasis:entry colname="col5">12.4 [12.2, 12.5]</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">10–30 cm</oasis:entry>
         <oasis:entry colname="col2">44.8 [44.0, 45.6]</oasis:entry>
         <oasis:entry colname="col3">46.2 [44.6, 47.8]</oasis:entry>
         <oasis:entry colname="col4">44.2 [43.9, 44.5]</oasis:entry>
         <oasis:entry colname="col5">45.9 [45.6, 46.2]</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">30–60 cm</oasis:entry>
         <oasis:entry colname="col2">79.2 [77.3, 81.0]</oasis:entry>
         <oasis:entry colname="col3">76.0 [73.5, 78.6]</oasis:entry>
         <oasis:entry colname="col4">81.1 [80.6, 81.6]</oasis:entry>
         <oasis:entry colname="col5">80.5 [80.0, 80.9]</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">60</mml:mn></mml:mrow></mml:math></inline-formula> cm</oasis:entry>
         <oasis:entry colname="col2">146.9 [142.3, 151.5]</oasis:entry>
         <oasis:entry colname="col3">117.4 [113.8, 121.1]</oasis:entry>
         <oasis:entry colname="col4">138.8 [137.5, 140.2]</oasis:entry>
         <oasis:entry colname="col5">125.6 [124.3, 126.9]</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total</oasis:entry>
         <oasis:entry colname="col2">283.4 [276.3, 290.8]</oasis:entry>
         <oasis:entry colname="col3">252.4 [244.4, 260.6]</oasis:entry>
         <oasis:entry colname="col4">276.1 [274.3, 277.8]</oasis:entry>
         <oasis:entry colname="col5">264.4 [262.7, 266.0]</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e3385">Comparison of estimates of individual tree aboveground
biomass (AGB, kilograms of dry matter) as a function of trunk diameter (DBH) for the power function
(orange) and the generalized Michaelis–Menten (blue) tree height allometric
models. <bold>(a)</bold> AGB estimates based on observed tree heights (grey points)
were compared with those based on height predicted from community-level
power function (orange lines) or generalized Michaelis–Menten (blue lines)
models. The lines are predictions from the allometric models and are based
on simulations of the posterior distribution (solid and dashed lines
correspond to the median and 90 % posterior central interval,
respectively) of the community-level, across-species relationships.
<bold>(b)</bold> Relative error for estimates of AGB based on model predictions of tree height
(AGB<inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">Hmod</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> compared with estimates derived from height observations
(AGB<inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">Hobs</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, for trees with DBH &gt; 30 cm (the full range is shown
in Fig. S3). Modeled tree heights were from community-level models fitted
with either the power function (orange dots) or generalized Michaelis–Menten
function (blue dots). The lines are LOESS smoothers that illustrate the
overall departures of each model from perfect prediction (i.e., AGB<inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">Hmod</mml:mi></mml:msub><mml:mo>/</mml:mo></mml:mrow></mml:math></inline-formula> AGB<inline-formula><mml:math id="M163" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">Hobs</mml:mi></mml:msub></mml:math></inline-formula> ratio equal to unity) as a function of DBH. All AGB
estimates in <bold>(a)</bold> and <bold>(b)</bold> were based on biomass allometry
(Eq. 6; Chave et al., 2014) and used the average
value of wood density across species (<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5304</mml:mn></mml:mrow></mml:math></inline-formula> g cm<inline-formula><mml:math id="M165" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; data from
Wright et al., 2010) to highlight variation
related to the height allometry.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/16/847/2019/bg-16-847-2019-f04.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
      <p id="d1e3483">Tree allometric relationships are widely employed to estimate forest biomass
and production and are the basic building blocks guiding the development and
validation of dynamic vegetation models. In tropical forests, the high
diversity of tree species makes it difficult to collect sufficient data for
characterizing species-specific allometric scaling relationships for any
substantial fraction of the flora. Here, we applied Bayesian hierarchical
models to a large dataset of tree morphology and functional traits to
estimate species-specific allometric relationships for the scaling of tree
height and crown area with trunk diameter and evaluate associations with
functional traits.</p>
<sec id="Ch1.S4.SS1">
  <title>Tree height allometry</title>
      <p id="d1e3491">Our analysis supported a saturating relationship between tree height and
trunk diameter, consistent with theory (Falster and
Westoby, 2003; Niklas, 2007) and with previous studies in tropical forests
(Thomas, 1996; Bullock, 2000; Banin et al., 2012; Feldpausch et al.,
2012; Molto et al., 2014; Fayolle et al., 2016; Ledo et al., 2016) and other
forest biomes (e.g., Canham et al., 1994). The
deceleration of height with respect to trunk diameter has been explained by
multiple (mutually compatible) mechanisms including mechanical resistance
(e.g., McMahon, 1973), growth and hydraulic constraints
(e.g., Niklas and Spatz, 2004), and asymmetric
competition for light (e.g., Iwasa et al., 1985; Bohlman and O'Brien,
2006; Falster and Westoby, 2003). Past work suggests that mechanical
resistance to self or wind loading cannot explain tree height allometries,
as trees are generally much shorter for a given diameter than the limits
based on mechanical constraints (Niklas, 2007). Metabolic
theories based on hydraulic constraints predict a constant logarithmic
scaling between tree height and trunk diameter, with an exponent close to 2<inline-formula><mml:math id="M166" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>3
(Niklas and Spatz, 2004; West et al., 2009), which is inconsistent with
our results that show that the community-level power function exponents differ
significantly from 2<inline-formula><mml:math id="M167" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>3 and that the data diverge strongly from a power
function.</p>
      <p id="d1e3508">Interspecific variation in tree height scaling parameters was associated
with sapling growth rates, which suggests a tendency for shade tolerance and
allometric strategies to be aligned in this community
(Wright et al., 2010). At one extreme are the
fast-growing, light-demanding tree species that are taller at small stem
diameters; at the other extreme, slow-growing, shade-tolerant species are
taller at larger diameters (Bohlman and O'Brien, 2006), with larger
asymptotic heights (parameter <inline-formula><mml:math id="M168" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>). This does not mean that shade-tolerant
species tend to have larger maximum heights, because maximum heights depend
on maximum diameters and are often much less than asymptotic heights for
small-statured species (Fig. S1). The differences in allometric parameters
should be interpreted in terms of differences in trajectories, especially at
small diameters, where light-demanding species take greater risks by growing
taller for a given diameter. In general, shade tolerance, and maximum height
are largely independent axes of variation among tropical tree species
(Bohlman and Pacala, 2012; Rüger et al., 2018) and may if anything
tend to be negatively correlated across species (Poorter et al., 2006;
Wright et al., 2010; Loubota Panzou et al., 2018). Our results quantify how
variation in shade tolerance aligns with differences in height trajectories
and thus in the parameters of saturating height allometric functions,
thereby providing a basis for defining plant functional types representative
of different gap-successional stages in tropical forests (Thomas, 1996;
Falster et al., 2017).</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Crown area allometry</title>
      <p id="d1e3524">Crown area and trunk diameter presented a scale-invariant relationship, with
no indication of saturation even for the largest trees in our dataset. As a
consequence, the model selection procedure favored power function models
with estimates of the community-level exponent close to 4<inline-formula><mml:math id="M169" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>3 (<inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.35</mml:mn><mml:mo>[</mml:mo><mml:mn mathvariant="normal">1.31</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.38</mml:mn><mml:msub><mml:mo>]</mml:mo><mml:mrow><mml:mn mathvariant="normal">90</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. This result is consistent with previous<?pagebreak page855?> analyses
across large scale environmental gradients reporting allometric exponents
for crown area between 1.21 and 1.36 (Bohlman and O'Brien, 2006;
Muller-Landau et al., 2006; Heineman et al., 2011; Antin et al., 2013;
Blanchard et al., 2016). This large-scale consistency in community-level
relationships emerges despite local variation among species (e.g., the
exponent <inline-formula><mml:math id="M171" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> ranged between 1.09 and 1.77 across species, Table S2). Modeling
studies show that community-level crown area allometric parameters crucially
determine the scaling of tree growth and mortality and the parameters of
tree size distributions (Muller-Landau et al., 2006; Farrior et al.,
2016). The fitted community-level crown area exponent is consistent with
predictions of 4<inline-formula><mml:math id="M172" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>3 scaling by elastic similarity models describing
mechanical resistance to wind (McMahon, 1973) as well as by
metabolic models invoking design constraints in transportation networks
(West et al., 2009).</p>
      <p id="d1e3579">Our finding of high interspecific variation in the allometric scaling of
crown geometry is consistent with previous studies (Iida et al., 2012; Lines et al.,
2012; Blanchard et al., 2016). This interspecific variation
has been linked to local differentiation and niche partitioning into canopy
layers (Clark et al., 2008; Bohlman and Pacala, 2012). For instance, the
crowns of subcanopy trees are wider than those of tall-statured trees on BCI
(Bohlman and O'Brien, 2006). Our analysis of crown area favored an
allometric model lacking trait influences on species-specific parameters,
although the model featuring a<?pagebreak page856?> weak positive relationship between the
intercept of the power function and the average wood density of each species
also received considerable support. The estimated relationship of crown area
to wood density is consistent with the theory that high wood density enables
more efficient horizontal crown expansion (Anten and Schieving,
2010) and with previous results for BCI (Francis et al.,
2017) and Pasoh, Malaysia (Iida et al., 2012; Francis et al., 2017). However, overall wood density
explains relatively little of the extensive interspecific variation in crown area allometries. Processes like crown plasticity in response to competition
(Thomas, 1996; Poorter et al., 2008) and other traits may explain
additional variation in crown geometry; for example, Loubota
Panzou et al. (2018) found that wind-dispersed species had taller heights
and larger crown dimensions.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Implications for forest biomass estimation</title>
      <p id="d1e3588">Allometric models for individual trees remain the preferred method to
estimate forest biomass and production at the stand level from plot data
(Chave et al., 2014; Brienen et al., 2015) and provide a basic template
to model carbon allocation, tree growth, and tree competition in dynamic
vegetation models. Whereas many biomass models incorporate only individual
trunk diameter (Brown, 1997) and species wood density
(Brown et al., 1989), current state-of-the-art models
typically include estimates of tree height as well
(e.g., Chave et al., 2014). Crown dimensions have
also been incorporated in some models (Goodman et al., 2014; Ploton et
al., 2016), although Fayolle et al. (2018) found a minor role of either
crown or height dimensions on biomass estimates. Inclusion of height and/or
crown dimensions in tree biomass models reduces errors in biomass estimates,
especially for large trees, which contribute disproportionately to forest
biomass and function (Lindenmayer et al., 2012).</p>
      <p id="d1e3591">Our results confirm the importance for biomass estimation of accounting for
saturation in height–diameter allometries (Feldpausch et al., 2011; Molto
et al., 2014; Fayolle et al., 2016). If heights are not directly measured,
any estimates of heights should be based on fitting saturating height
functions to datasets with sufficient data for large trees to accurately
capture the saturating component (Sullivan et al., 2018). The use of
power function fits for heights leads to substantial overestimates of
biomass of large trees, which translates to substantial overestimates of
stand-level biomass.</p>
      <p id="d1e3594">The considerable heterogeneity among species in both tree height and crown area allometries presents another opportunity for improving estimates of tree
biomass. The use of average allometric models that ignore changes in species
composition can result in biased estimates of total biomass, reflecting the
underlying nonlinearities of these relationships. At the same time, it is
clearly impractical to develop species-specific allometries for every
tropical tree species. The use of hierarchical models based on functional or
demographic traits provides a manageable option for incorporating and
accounting for the diversity of allometric scaling relationships in biomass
models. Ideally, such hierarchical models would be grounded in a mechanistic
understanding of underlying trade-offs on trait diversity
(Falster et al., 2017).</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Conclusions and directions for future research</title>
      <p id="d1e3604">Despite growing evidence highlighting the deceleration in diameter–tree height scaling (e.g., Thomas, 1996; Bullock, 2000; Banin et al., 2012;
Ledo et al., 2016), the power function remains the most commonly used model
of tree height allometry in tropical forests (e.g., Antin et al., 2013;
Goodman et al., 2014; Blanchard et al., 2016; Mensah et al., 2018). Even
studies featuring saturating relationships often fix the exponent of the gMM
or Weibull functions to unity (e.g., Banin et al., 2012; Ledo et al.,
2016; Fayolle et al., 2016; Molto et al., 2014), a value that our results
show is inconsistent with data. Our results favored the gMM function over
the modified three-parameter Weibull previously proposed by
Thomas (1996), suggesting that it provides the required level
of flexibility to accommodate changes in tree height scaling during
ontogeny. Three-parameter saturating models clearly outperform two-parameter
power functions in large datasets containing data on many large individuals;
however, the advantage in fit of the saturating models is often insufficient
to compensate for the penalty of an extra parameter in the many cases in
which smaller datasets or those with data for few larger individuals are
analyzed in isolation (Thomas, 1996; Iida et al., 2011; Goodman et al.,
2014). We recommend that future analyses of small datasets on tropical tree
allometries be conducted in a Bayesian framework in which prior data for
larger datasets informs the choice of functional forms (i.e., restriction to
saturating functions) and informs prior distributions on parameter values.
Future studies can take advantage of our data, code, and results to
constrain inferences on tree allometry using informative priors
(e.g., Ellison, 2004).</p>
      <p id="d1e3607">Our analysis of crown allometric scaling involved an unusually large dataset,
yet remained limited by sample size, measurement difficulties, and failure to
address other dimensions of crown size such as crown depth. The crown area
dataset was only one-fifth the size of our tree height dataset, and only 1/14
of the trees had trunk diameters greater than 100 cm. For ground-based data,
which constituted the vast majority of our dataset, measurements of crown
dimensions are more complicated and time-consuming than those of height, and
we expect them to have higher measurement error. Aerial and even satellite
imagery increasingly offers an alternative for precisely and accurately
measuring crown areas of fully sun-exposed trees, an alternative we took
advantage of here. However, these methods do not enable crown area estimates
for subcanopy trees (but see e.g., Paris et al., 2016; Shendryk et al.,
2016), which differ systematically in their crown allometries. Finally, we
evaluated only crown area, even though crown depth and crown shape are<?pagebreak page857?> also
important for the estimation of tree biomass (Goodman et al., 2014; Ploton et
al., 2016) and for characterizing tree species life history strategies
(Canham et al., 1994; Bohlman and O'Brien, 2006; Poorter et al., 2006).
Despite these limitations, our analysis consistently favored models of crown area vs. trunk diameter without saturation and suggested a weak effect of
species differences in wood density on the considerable interspecific
variability in the scaling of crown size.</p>
      <p id="d1e3610">Future allometric studies should address additional individual-level,
species-level, and site-level covariates of tree allometry and develop
improved models of their influences. Interspecific variation in allometry
may be more fully explained by incorporating better measures of
shade tolerance and additional traits such as seed dispersal mode, leaf
habit (deciduous or evergreen) and maximum stature (e.g., Poorter et al.,
2003, 2006; Loubota Panzou et al., 2018). Interindividual variation in
allometry depends not only on species identity but also on environmental
conditions, biogeographic region, and competitive neighborhood. Previous
studies show that tropical tree height allometries vary with climate
(Chave et al., 2014; Mensah et al., 2018), topography (Ferry et al.,
2010; Marshall et al., 2012), edaphic conditions (Aiba and Kitayama,
1999; Feldpausch et al., 2011), canopy position (Thomas, 1996; O'Brien et
al., 1995; Poorter et al., 2006), and light exposure (Rüger
et al., 2012). Ideally, these factors would be incorporated not in a purely
phenomenological manner but would be informed by mechanistic models of underlying
trade-offs and alternative strategies (Dybzinski et al., 2011; Farrior et
al., 2013).</p>
      <p id="d1e3613">Tree allometric functions are critical components of forest biomass
estimates and of mechanistic models of forest structure and dynamics. Forest
size structure and biomass in vegetation models are highly sensitive to
allometry parameters and functional forms (Farrior et al., 2016; Weng et
al., 2017). Our results confirm that allometric models for tropical trees
should incorporate saturating functions for tree height and interspecific
variation in scaling parameters. In our analyses of data for over 10 000
tropical trees, tree height presented a saturating relationship with trunk
diameter that was well captured by the three-parameter generalized
Michaelis–Menten or Weibull functions, whereas power function models
exhibited systematic biases in tree height predictions, especially for large
trees. In contrast, our somewhat smaller dataset for crown area exhibited a
constant scaling with stem size, consistent with a power function. We
observed extensive interspecific variability in allometric scaling, with
shade tolerance explaining considerable variation in height parameters and
wood density weakly related to crown area parameters. The relationship of
tree allometric parameters with functional and demographic traits can
provide a basis for the incorporation of compositional effects into
estimates of forest biomass and production, including through the improved
parameterization of tropical plant functional types in vegetation models.</p>
</sec>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e3622">All the data used in this study are available at Dryad through the data package Martínez Cano et
al. (2019)
(<ext-link xlink:href="https://doi.org/10.5061/dryad.85k53v8" ext-link-type="DOI">10.5061/dryad.85k53v8</ext-link>; last access: 7 February 2019).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e3628">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/bg-16-847-2019-supplement" xlink:title="pdf">https://doi.org/10.5194/bg-16-847-2019-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p id="d1e3637">HCML and SWP conceived the study. HCML, SJW and SAB contributed data and expertise. IMC programmed the Bayesian models and led the analyses.
IMC and HCML drafted an initial version of the paper. All authors discussed
the results and revised the paper.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e3643">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3649">The BCI forest dynamics research project was founded by Steven P. Hubbell and
Robin B. Foster, was sustained for many years by Richard Condit, and is now
managed by Stuart Davies, Suzanne Lao, and Rolando Perez under the ForestGEO
program of the Smithsonian Tropical Research in Panama. Numerous
organizations have provided funding, principally the US National Science
Foundation, and hundreds of field workers have contributed. Data on tree
morphology have been gathered through several dedicated projects, and we
gratefully acknowledge the contributions of Pablo Ramos, Paulino Villareal,
Sean Thomas, Sean O'Brien, Peter Spiro, and
Jonathan Dandois. Isabel Martínez Cano, was supported by the Carbon
Mitigation Initiative at Princeton University. <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: Kirsten Thonicke<?xmltex \hack{\newline}?> Reviewed by:
Nicolas Picard, Adeline Fayolle, and one anonymous referee</p></ack><ref-list>
    <title>References</title>

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    <!--<article-title-html>Tropical tree height and crown allometries for the Barro Colorado Nature Monument, Panama: a comparison of alternative hierarchical models incorporating interspecific variation in relation to life history traits</article-title-html>
<abstract-html><p>Tree allometric relationships are widely employed for estimating forest biomass
and production and are basic building blocks of dynamic vegetation models.
In tropical forests, allometric relationships are often modeled by fitting
scale-invariant power functions to pooled data from multiple species, an
approach that fails to capture changes in scaling during ontogeny and
physical limits to maximum tree size and that ignores interspecific
differences in allometry. Here, we analyzed allometric relationships of tree
height (9884 individuals) and crown area (2425) with trunk diameter for 162
species from the Barro Colorado Nature Monument, Panama. We fit
nonlinear, hierarchical models informed by species traits –
wood density, mean sapling growth, or sapling mortality – and assessed the
performance of three alternative functional forms: the scale-invariant power
function and the saturating Weibull and generalized Michaelis–Menten (gMM)
functions. The relationship of tree height with trunk diameter was best fit
by a saturating gMM model in which variation in allometric parameters was
related to interspecific differences in sapling growth rates, a measure of
regeneration light demand. Light-demanding species attained taller heights at
comparatively smaller diameters as juveniles and had shorter asymptotic
heights at larger diameters as adults. The relationship of crown area with
trunk diameter was best fit by a power function model incorporating a weak
positive relationship between crown area and species-specific wood density.
The use of saturating functional forms and the incorporation of functional
traits in tree allometric models is a promising approach for improving estimates
of forest biomass and productivity. Our results provide an improved basis for
parameterizing tropical plant functional types in vegetation models.</p></abstract-html>
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