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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-17-4007-2020</article-id><title-group><article-title>Rainfall intensification increases the contribution of rewetting pulses to
soil heterotrophic respiration</article-title><alt-title>Rainfall intensification effects on respiration pulses</alt-title>
      </title-group><?xmltex \runningtitle{Rainfall intensification effects on respiration pulses}?><?xmltex \runningauthor{S. Manzoni et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Manzoni</surname><given-names>Stefano</given-names></name>
          <email>stefano.manzoni@natgeo.su.se</email>
        <ext-link>https://orcid.org/0000-0002-5960-5712</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Chakrawal</surname><given-names>Arjun</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4572-4347</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Fischer</surname><given-names>Thomas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6235-2261</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Schimel</surname><given-names>Joshua P.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1022-6623</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Porporato</surname><given-names>Amilcare</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9378-207X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Vico</surname><given-names>Giulia</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-7849-2653</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Physical Geography, Stockholm University, 10691
Stockholm, Sweden</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Bolin Centre for Climate Research, Stockholm University,  10691 Stockholm, Sweden</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Central Analytical Laboratory, Brandenburg University of Technology,
Cottbus, Germany</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Department of Ecology, Evolution, and Marine Biology, University of
California, Santa Barbara, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Department of Civil and environmental Engineering, Princeton
University, Princeton, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Department of Crop Production Ecology, Swedish University of
Agricultural Sciences, Uppsala, Sweden</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Stefano Manzoni (stefano.manzoni@natgeo.su.se)</corresp></author-notes><pub-date><day>10</day><month>August</month><year>2020</year></pub-date>
      
      <volume>17</volume>
      <issue>15</issue>
      <fpage>4007</fpage><lpage>4023</lpage>
      <history>
        <date date-type="received"><day>16</day><month>March</month><year>2020</year></date>
           <date date-type="rev-request"><day>6</day><month>April</month><year>2020</year></date>
           <date date-type="rev-recd"><day>17</day><month>June</month><year>2020</year></date>
           <date date-type="accepted"><day>23</day><month>June</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2020 Stefano Manzoni et al.</copyright-statement>
        <copyright-year>2020</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020.html">This article is available from https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e160">Soil drying and wetting cycles promote carbon (C) release through
large heterotrophic respiration pulses at rewetting, known as the “Birch”
effect. Empirical evidence shows that drier conditions before rewetting and
larger changes in soil moisture at rewetting cause larger respiration
pulses. Because soil moisture varies in response to rainfall, these
respiration pulses also depend on the random timing and intensity of
precipitation. In addition to rewetting pulses, heterotrophic respiration
continues during soil drying, eventually ceasing when soils are too dry to
sustain microbial activity. The importance of respiration pulses in
contributing to the overall soil heterotrophic respiration flux has been
demonstrated empirically, but no theoretical investigation has so far
evaluated how the relative contribution of these pulses may change along
climatic gradients or as precipitation regimes shift in a given location. To
fill this gap, we start by assuming that heterotrophic respiration rates
during soil drying and pulses at rewetting can be treated as random
variables dependent on soil moisture fluctuations, and we develop a stochastic
model for soil heterotrophic respiration rates that analytically links the
statistical properties of respiration to those of precipitation. Model
results show that both the mean rewetting pulse respiration and the mean
respiration during drying increase with increasing mean precipitation.
However, the contribution of respiration pulses to the total heterotrophic
respiration increases with decreasing precipitation frequency and to a
lesser degree with decreasing precipitation depth, leading to an overall
higher contribution of respiration pulses under future more intermittent and
intense precipitation. Specifically, higher rainfall intermittency at
constant total rainfall can increase the contribution of respiration pulses
up to <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> % or 20 % of the total heterotrophic respiration in
mineral and organic soils, respectively. Moreover, the variability of both
components of soil heterotrophic respiration is also predicted to increase
under these conditions. Therefore, with future more intermittent
precipitation, respiration pulses and the associated nutrient release will
intensify and become more variable, contributing more to soil biogeochemical
cycling.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e182">Heterotrophic respiration pulses often occur after dry soils are wetted by
rainfall or irrigation (Barnard
et al., 2020; Borken and Matzner, 2009; Canarini et al., 2017; Jarvis et
al., 2007; Kim et al., 2012). The respiration rates achieved at rewetting
can be much higher than the rates maintained under permanently moist
conditions, suggesting that the rewetting itself triggers a
disproportionally high <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> production. Even if they are short-lived,
these pulses can contribute a significant fraction of the annual <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
release (Kim
et al., 2012; Li et al., 2004; Yan et al., 2014). Their occurrence had been
documented as long ago as Birch (1958) – for which the<?pagebreak page4008?> phenomenon has been
named the “Birch effect” – but they remain difficult to explain and predict.</p>
      <p id="d1e207">Respiration pulses are larger when the change in soil moisture is larger and
when the soil was drier before rewetting, as shown by observations under
both laboratory (Birch,
1958; Fischer, 2009; Guo et al., 2014; Lado-Monserrat et al., 2014;
Schaeffer et al., 2017; Williams and Xia, 2009) and field conditions (Cable
et al., 2008; Carbone et al., 2011; Lopez-Ballesteros et al., 2016; Rubio
and Detto, 2017; Unger et al., 2010; Yan et al., 2014). Besides <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
displacement at rewetting, several mechanisms linked to microbial processes
have been postulated to explain these patterns (Barnard
et al., 2020; Canarini et al., 2017; Kim et al., 2012; Schimel et al.,
2007). It has been argued that cell lysis due to a rapid increase in water
potential and subsequent consumption of the dead cells may cause the pulse
(Bottner, 1985). Later measurements showed that little cell lysis
occurs but that intracellular materials (osmolytes) can be released at
rewetting, contributing to the respiration pulse
(Fierer and Schimel, 2003). However, in some soils
microbial cells become dormant during drying rather than accumulating
osmolytes (Boot et al., 2013). It is thus possible
that respiration pulses are triggered by a physical process associated with
the rewetting event – possibly reestablishment of hydrologic connectivity
between substrates and microorganisms
(Manzoni et al., 2016), or physical
disruption of soil aggregates releasing old organic matter
(Homyak et al., 2018). Indeed, there is a strong
correlation between the <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> production after rewetting and the amount
of extractable organic C consumed, suggesting that extractable C accumulated
during the previous dry period could fuel the respiration pulse (Canarini
et al., 2017; Guo et al., 2014; Williams and Xia, 2009). It is likely that
multiple mechanisms work in concert, shifting their relative importance
under different conditions (Slessarev and
Schimel, 2020).</p>
      <p id="d1e232">The focus on the processes causing respiration pulses resulted in extensive
work conducted under idealized laboratory conditions, in which soil moisture
changes were controlled, typically following a regular pattern of drying and
wetting (Fierer
and Schimel, 2002; Miller et al., 2005; Shi and Marschner, 2014, 2015; Xiang
et al., 2008). However, soil moisture varies randomly due to the stochastic
nature of rainfall events (Katul et al., 2007;
Rodriguez-Iturbe and Porporato, 2004), and this temporal variability can
either promote or decrease soil organic C storage depending on its effects
on soil microbes (Lehmann et al., 2020). Two
features of soil moisture dynamics are particularly important because they
directly affect the intensity of a respiration pulse – the duration of dry
periods and the soil moisture increment at rewetting. Therefore,
experimental designs based on regular cycles of drying and wetting do not
allow exploration of how the stochastic nature of soil moisture fluctuations may
affect respiration pulses. Capturing the effect of these stochastic
fluctuations can be important as climatic changes are altering rainfall
patterns – often lengthening the duration of droughts and increasing the
intensity of the (less frequent) rainfall events
(IPCC, 2012).</p>
      <p id="d1e235">To quantify how the long-term mean heterotrophic respiration varies as a
function of statistical rainfall properties (duration of dry periods and
intensity), we developed a stochastic soil moisture and respiration model,
parameterized using available respiration data. Specifically, we ask – how
does variability in rainfall translate into variability in respiration pulses?
How does the long-term mean contribution of respiration pulses vary along
climatic gradients? These questions are motivated by the hypothesis that
respiration pulses contribute a larger proportion of soil heterotrophic
respiration under climates with more intermittent and intense rainfall
events, compared to climates in which soil moisture variations are mild. If
that is the case, future climatic conditions characterized by longer
droughts and more intense rainfall events are expected to increase the
overall role of respiration pulses in ecosystem C budgets.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Theory</title>
      <p id="d1e253">The theoretical framework is illustrated in Fig. 1. We start from the
premise that heterotrophic respiration follows changes in soil moisture
during drying (<inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and that respiration pulses occur immediately
following rewetting. As such, respiration pulses depend on both the soil
moisture at the end of the dry period and the soil moisture increase caused
by rainfall (<inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). The stochasticity of rainfall timing and amount
determines a range of possible durations of dry spells and soil moisture
increments when rainfall occurs. As a result, respiration can be regarded as
a stochastic process. To statistically characterize the two types of
respiration, the statistical properties of both soil moisture and soil
moisture changes at rewetting are needed. These statistical properties are
included in the probability density function (PDF) of soil moisture and the
joint PDF of soil moisture and its increase at rewetting. Both distributions
are derived in Sect. 2.1.1. The PDF of
respiration rates during drying and respiration pulses at rewetting are
derived in Sect. 2.1.2 and
2.1.3, respectively. All symbols are defined in
Table 1.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e280">Schematic illustration of the theoretical framework developed to
describe how the components of heterotrophic respiration change as a
function of rainfall statistical properties. <bold>(a)</bold> Rainfall is treated as a
stochastic process driving random fluctuations in soil moisture, which are
captured by the probability density functions (PDF, indicated by <inline-formula><mml:math id="M8" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> with a
subscript for the variable of interest) of soil moisture (<inline-formula><mml:math id="M9" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>) and soil
moisture increments (<inline-formula><mml:math id="M10" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>). <bold>(b)</bold> Respiration rate during drying (<inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and
respiration pulses at rewetting (<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> respectively depend on soil
moisture and on both soil moisture increments and soil moisture at the end
of the dry period (<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>); based on the PDFs of <inline-formula><mml:math id="M14" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M15" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the PDFs of
the two respiration components are obtained. <bold>(c)</bold> Using these PDF of
respiration, long-term mean respiration rates during drying (<inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>) and respiration pulses (<inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>)
are calculated, and their relations with the statistical properties of
precipitation are analyzed.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f01.png"/>

        </fig>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e414">Symbol definitions and units. Symbol <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents the
probability density function (PDF) of the stochastic variable <inline-formula><mml:math id="M20" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> indicated in
the subscript.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Symbol</oasis:entry>
         <oasis:entry colname="col2">Definition</oasis:entry>
         <oasis:entry colname="col3">Units</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M21" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Parameter in the rewetting respiration equation</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Normalization constant in the soil moisture PDF</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Parameter group, <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M25" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Evapotranspiration rate</oasis:entry>
         <oasis:entry colname="col3">m d<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Evapotranspiration rate at the soil field capacity</oasis:entry>
         <oasis:entry colname="col3">m d<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M29" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Precipitation event depth</oasis:entry>
         <oasis:entry colname="col3">m</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M30" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Rate of water loss via deep percolation and surface runoff</oasis:entry>
         <oasis:entry colname="col3">m d<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M32" display="inline"><mml:mi mathvariant="bold">J</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Jacobian matrix</oasis:entry>
         <oasis:entry colname="col3"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M33" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Soil porosity</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">PDF of the soil respiration rate during dry-down periods</oasis:entry>
         <oasis:entry colname="col3">gC<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> d</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mspace linebreak="nobreak" width="1em"/></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">PDF of the respired carbon at rewetting</oasis:entry>
         <oasis:entry colname="col3">gC<inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M39" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi>x</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">PDF of normalized soil moisture (<inline-formula><mml:math id="M41" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">PDF of normalized soil moisture at the end of the dry period (<inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Joint PDF of the auxiliary variable <inline-formula><mml:math id="M45" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> and of the respired carbon at rewetting (<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">gC<inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi>y</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Marginal PDF of soil moisture increase due to precipitation (<inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>y</mml:mi><mml:mi mathvariant="normal">|</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">PDF of soil moisture increase due to precipitation (<inline-formula><mml:math id="M52" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>) conditional on soil moisture</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">at the end of the previous dry period (<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Joint PDF of soil moisture at the end of a dry period (<inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and soil moisture increase</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">due to precipitation (<inline-formula><mml:math id="M56" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M57" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Precipitation rate</oasis:entry>
         <oasis:entry colname="col3">m d<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Normalized respiration rate during drying, <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Normalized respired carbon at rewetting, <inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Respiration rate during dry-down periods</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Maximum respiration rate at the soil field capacity</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M68" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Respired carbon at rewetting</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M70" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Maximum respired carbon at rewetting (for <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M74" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Mean rate of respiration from rewetting pulses</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M76" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Mean total respiration rate (sum of <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M83" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Relative volumetric soil moisture (i.e., saturation)</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Soil moisture at the wilting point and at field capacity, respectively</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M86" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Time</oasis:entry>
         <oasis:entry colname="col3">d</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M87" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Normalized soil moisture, <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi>s</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Normalized soil moisture at the end of a dry period</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M90" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Auxiliary variable, <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M92" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Change in normalized soil moisture at rewetting</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Soil rooting depth</oasis:entry>
         <oasis:entry colname="col3">m</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M94" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Mean precipitation event depth</oasis:entry>
         <oasis:entry colname="col3">m</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M95" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Parameter group, <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mi mathvariant="italic">α</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Gamma function, <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mi>z</mml:mi></mml:mfenced><mml:mo>=</mml:mo><mml:msubsup><mml:mo>∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi mathvariant="normal">∞</mml:mi></mml:msubsup><mml:msup><mml:mi>u</mml:mi><mml:mrow><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi>u</mml:mi></mml:mrow></mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mi>u</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mo>⋅</mml:mo><mml:mo>,</mml:mo><mml:mo>⋅</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Incomplete gamma function, <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msubsup><mml:mo>∫</mml:mo><mml:mi>z</mml:mi><mml:mi mathvariant="normal">∞</mml:mi></mml:msubsup><mml:msup><mml:mi>u</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi>u</mml:mi></mml:mrow></mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mi>u</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mfenced open="[" close="]"><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Dirac delta function</oasis:entry>
         <oasis:entry colname="col3">[argument]<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M103" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Parameter group, <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M105" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Mean frequency of precipitation events</oasis:entry>
         <oasis:entry colname="col3">d<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Standard deviation of the respiration rate during drying</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M109" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Standard deviation of the respiration pulse at rewetting</oasis:entry>
         <oasis:entry colname="col3">gC m<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mfenced close="]" open="["><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Heaviside step function</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mo>⋅</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Long-term average</oasis:entry>
         <oasis:entry colname="col3">[argument]</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<sec id="Ch1.S2.SS1.SSS1">
  <label>2.1.1</label><title>Soil moisture dynamics</title>
      <?pagebreak page4010?><p id="d1e2241">Soil moisture varies in response to rainfall events and the subsequent loss
of soil water by percolation below the rooting zone and
evapotranspiration. The dynamics of soil moisture in the rooting zone (the
most biogeochemically active soil layer) can be described by the mass
balance equation (Laio et al., 2001;
Rodriguez-Iturbe and Porporato, 2004),
              <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M114" display="block"><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>s</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mi>P</mml:mi><mml:mfenced open="(" close=")"><mml:mi>t</mml:mi></mml:mfenced><mml:mo>-</mml:mo><mml:mi>E</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>L</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>s</mml:mi><mml:mfenced close=")" open="("><mml:mi>t</mml:mi></mml:mfenced><mml:mo>,</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M115" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula> is the saturation level (i.e., the relative volumetric soil
moisture), <inline-formula><mml:math id="M116" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is the soil porosity, <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the rooting depth, and <inline-formula><mml:math id="M118" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M119" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula>, and
<inline-formula><mml:math id="M120" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> represent precipitation inputs, evapotranspiration rate, and the
combination of water losses due to percolation below the rooting zone and
surface runoff. Equation (1) is interpreted at the
daily timescale. Given our aim to describe the statistical properties of
respiration rather than the details of soil moisture dynamics, we simplify
the soil moisture mass balance equation to a form that is analytically
tractable. Thus, we assume that evapotranspiration is the dominant water
loss when soil moisture is lower than a threshold <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (equivalent to the
soil field capacity), whereas runoff and deep percolation dominate above
this threshold. Also, runoff and percolation are assumed to occur rapidly
compared to the timescales of the soil dry-down (free drainage conditions),
so that, after a precipitation event that brings soil moisture above the
level <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, soil moisture decreases instantaneously to <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. For
simplicity, evapotranspiration is modeled as a linear function of soil
moisture (Porporato et al., 2004),
              <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M124" display="block"><mml:mrow><mml:mi>E</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>s</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mi>x</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula> is the maximum rate of evapotranspiration, <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
plant wilting point (below which ET becomes negligible), and <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
threshold above which runoff and percolation are dominant. In the second
equality, a normalized soil moisture denoted by <inline-formula><mml:math id="M128" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> is introduced to further
simplify the notation. With these assumptions and definitions, <inline-formula><mml:math id="M129" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula> ranges
between <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, while the normalized soil moisture varies between
0 and 1.</p>
      <p id="d1e2510">Precipitation is treated as a marked Poisson process with mean frequency
<inline-formula><mml:math id="M132" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and rain-event depths exponentially distributed with mean <inline-formula><mml:math id="M133" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>. At each rain event, soil moisture increases by an amount corresponding to
the rain event depth (normalized by <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), unless the depth exceeds the
available soil storage capacity (i.e., <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi>s</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>).
Assuming that rainfall exceeding this capacity is routed to runoff, the PDF
of soil moisture increments due to a rain event, <inline-formula><mml:math id="M136" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>, for a given soil moisture
at the end of the dry period, <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, is given by
(Laio et al., 2001)
              <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M138" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>y</mml:mi><mml:mi mathvariant="normal">|</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfenced><mml:mi mathvariant="italic">γ</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mi>y</mml:mi><mml:mo>-</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where <inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>y</mml:mi><mml:mi mathvariant="normal">|</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> is the PDF of <inline-formula><mml:math id="M140" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> conditional on soil moisture
at the end of the dry period, <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mfenced open="[" close="]"><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> is the
Heaviside step function; <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mfenced close="]" open="["><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> is the Dirac delta
function; and <inline-formula><mml:math id="M144" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> is a parameter group defined as <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mi mathvariant="italic">α</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M146" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> can
be interpreted as the number of average rainfall events needed to replenish
the plant-available soil water). The first term on the right-hand side of
Eq. (3) represents the probability density of a
soil moisture increase <inline-formula><mml:math id="M147" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> equal to the rainfall depth (<inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mfenced close="]" open="["><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> is equal to 1 for <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; zero otherwise). The second
term represents the probability of a soil moisture increase from the value
<inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to the soil field capacity (<inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula>1). This term is also referred to as
an “atom of probability” because <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mfenced close="]" open="["><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> is equal to
zero for all soil moisture increments, except <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula>1-<inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, at which <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mfenced open="[" close="]"><mml:mo>⋅</mml:mo></mml:mfenced><mml:mo>=</mml:mo><mml:mi mathvariant="normal">∞</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <?pagebreak page4011?><p id="d1e2909">With this stochastic description of precipitation events and further
assuming stochastic stationary conditions, the PDF of the normalized soil
moisture driven by the dynamics in Eq. (1) can be
obtained analytically and reads (Porporato et al., 2004)
              <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M156" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi>x</mml:mi></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi>x</mml:mi><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:msup><mml:msup><mml:mi>x</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfrac><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mrow></mml:msup></mml:mrow><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M157" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is a parameter group defined as <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub></mml:mrow><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is a
normalization constant that guarantees that the area under <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mi>x</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> between <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> and 1 is 1,
              <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M162" display="block"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mfrac><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:msup></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mo>⋅</mml:mo><mml:mo>,</mml:mo><mml:mo>⋅</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> are the complete and incomplete gamma functions
(defined in Table 1). The PDF of soil moisture is the basis to obtain the
PDF of respiration during soil drying (Sect. 2.1.2).</p>
      <p id="d1e3131">The last distribution needed to calculate the statistical properties of soil
respiration pulses (Sect. 2.1.3) is the joint PDF of soil moisture at the
end of a dry period and soil moisture increase due to precipitation events,
denoted by <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> (note that both <inline-formula><mml:math id="M166" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are stochastic variables in this joint PDF). Thanks to the properties
of the Poisson process, the PDF of soil moisture at the end of the dry
period is equal to the PDF of soil moisture at a generic time
(Cox and Miller, 2001), i.e., <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi>x</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>. Because precipitation does not depend on
antecedent soil moisture conditions in this model, the PDF of soil moisture
at the end of a dry period is independent of the PDF of the subsequent
precipitation event and soil moisture increase. Thus, the joint PDF of
<inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M170" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> is given by the product of the PDFs of <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 4) and of <inline-formula><mml:math id="M172" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> conditional to <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 3),
              <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M174" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>y</mml:mi><mml:mi mathvariant="normal">|</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="Ch1.S2.SS1.SSS2">
  <label>2.1.2</label><title>Heterotrophic respiration during soil drying</title>
      <p id="d1e3335">During a dry period, the heterotrophic respiration rate decreases in
response to the gradual decrease in soil moisture, following a
concave-downward trend (Manzoni et al., 2012;
Moyano et al., 2012). Consistent with the hydrologic model setup, we assume
that the soil drains rapidly and hence does not remain under saturated
conditions long enough to develop anoxic conditions. It is thus reasonable
to assume that respiration declines between the soil field capacity
(equivalent to <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in this model) and a lower soil moisture threshold for
microbial activity. This lower threshold corresponds to water potential
levels around <inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> MPa in sieved soil samples (Manzoni
and Katul, 2014), but here we assume that respiration becomes much smaller
than rates under well-watered conditions already at the plant wilting point
<inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, i.e., at a water potential of <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> MPa. This assumption is motivated
by the observation that in intact soil cores and under field conditions
respiration stops in wetter conditions than at <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> MPa
(e.g., <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.7</mml:mn></mml:mrow></mml:math></inline-formula> MPa; Carbone
et al., 2011). Moreover, this allows us to keep the parameter number to a
minimum, consistent with the minimal soil moisture balance model of Eqs. (1) and (2) and the
overall idealized representation of soil heterotrophic respiration. The
respiration decrease with a lower threshold <inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (corresponding to
<inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>) can be captured by a parabolic relation,
              <disp-formula id="Ch1.E7" content-type="numbered"><label>7</label><mml:math id="M183" display="block"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> denotes the respiration rate during drying, and
<inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the maximum respiration rate in the absence of rapid
rewetting (i.e., <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mi>s</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). Using other monotonic and
concave-downward relations between respiration and soil moisture would not
qualitatively alter the results.</p>
      <?pagebreak page4012?><p id="d1e3528">In Eq. (1), soil moisture is a random variable,
whose PDF follows Eq. (4). Therefore, <inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from
Eq. (7) is also a random variable, which can be
obtained from the PDF of soil moisture using the derived distribution
approach, also referred to as the Jacobian rule (Kottegoda and Rosso,
1998),
              <disp-formula id="Ch1.E8" content-type="numbered"><label>8</label><mml:math id="M190" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>x</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mfenced open="|" close="|"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where on the right-hand side the PDF of soil moisture is evaluated at
moisture values corresponding to given respiration values. This is done by
inverting Eq. (7) and expressing <inline-formula><mml:math id="M191" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> as a function of
<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
              <disp-formula id="Ch1.E9" content-type="numbered"><label>9</label><mml:math id="M193" display="block"><mml:mrow><mml:mi>x</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:msqrt><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            We note that Eq. (7) is monotonic in the domain
<inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mn mathvariant="normal">0</mml:mn><mml:mo>≤</mml:mo><mml:mi>x</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, which allows unambiguous definition of the inverse of
<inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi>x</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>. Had we used a nonmonotonic <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mi>x</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>
function (e.g., for applications of this approach to soils experiencing long
saturation periods), the derived distribution approach would have required
splitting the <inline-formula><mml:math id="M197" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> domain into two – one for each monotonic branch of
<inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi>x</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>. In turn, Eq. (9) allows the
calculation of the slope of the <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> relation, which is also
needed in Eq. (8),
              <disp-formula id="Ch1.E10" content-type="numbered"><label>10</label><mml:math id="M200" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:msqrt></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            The PDF of <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is thus obtained from Eqs. (8)–(10) as
              <disp-formula id="Ch1.E11" content-type="numbered"><label>11</label><mml:math id="M202" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msqrt></mml:mrow></mml:mfenced></mml:mrow></mml:msup><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msqrt></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfrac><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">η</mml:mi><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msqrt></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where the normalized respiration <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula> is
introduced to simplify the notation. This PDF can now be used to analytically calculate
the long-term mean of <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, denoted by
<inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>,
              <disp-formula id="Ch1.E12" content-type="numbered"><label>12</label><mml:math id="M206" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="{" close=""><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">γ</mml:mi><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mfenced close="}" open=""><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">γ</mml:mi><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">η</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where for convenience the parameter group <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is defined. The standard deviation of
<inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, denoted by <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, can not be obtained analytically, but
it can be calculated through numerical integration of Eq. (11).</p>
</sec>
<sec id="Ch1.S2.SS1.SSS3">
  <label>2.1.3</label><title>Heterotrophic respiration pulses at rewetting</title>
      <p id="d1e4219">Heterotrophic respiration pulses at rewetting are caused by mineralization
of available C and microbial products at the end of the dry period, which in
turn depend on how intense the rewetting event was. As a result of these
processes, in a given soil, rewetting events depend on both soil moisture
before the rewetting <inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the change in soil moisture <inline-formula><mml:math id="M211" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>
(Birch,
1958; Lado-Monserrat et al., 2014). This relation can be captured by the
empirical function (justified and parameterized in Sect. 2.2.1)
              <disp-formula id="Ch1.E13" content-type="numbered"><label>13</label><mml:math id="M212" display="block"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>y</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="italic">θ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the largest respiration pulse possible, which is
achieved when an initially dry soil reaches saturation, i.e., <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>. The parameter <inline-formula><mml:math id="M216" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> accounts for the effect of antecedent soil
moisture conditions – for a given value of <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the respiration pulse
increases with increasing <inline-formula><mml:math id="M218" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>. The last term in Eq. (13) is a Heaviside function limiting the relation
between <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M220" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> to conditions in which soil moisture at most fills the
available pore space (as in Eq. 3, <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mfenced close="]" open="["><mml:mo>⋅</mml:mo></mml:mfenced></mml:mrow></mml:math></inline-formula> is equal to 1 only when <inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). If before the rain
event soil moisture is at the plant wilting point (<inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>) and the
precipitation event is sufficient to reach <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (i.e., <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>), the
maximum respiration pulse is attained and <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Here,
<inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents an amount of C respired when the rewetting event occurs,
so its dimensions differ from those of the respiration rate during drying,
<inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; these two quantities are combined in the total heterotrophic
respiration rate in Sect. 2.1.5.</p>
      <p id="d1e4516">Because both <inline-formula><mml:math id="M229" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are random variables that follow the PDF of Eq. (6), <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> should also be regarded as a random
variable following its own PDF. Different from the PDF of <inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, which was
obtained from the univariate PDF of soil moisture, the PDF of <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> has to
be derived from the joint PDF of <inline-formula><mml:math id="M234" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The derived distribution
approach can still be used, but it requires the determinant of the Jacobian
matrix of the transformation from <inline-formula><mml:math id="M236" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(Kottegoda and Rosso, 1998). To proceed, it is first convenient
to introduce an auxiliary variable <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, which is used together with
Eq. (13) to find the transformation from the
original variables <inline-formula><mml:math id="M240" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M243" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>,
              <disp-formula id="Ch1.E14" content-type="numbered"><label>14</label><mml:math id="M244" display="block"><mml:mtable class="split" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mfenced open="{" close=""><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:mi>X</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi>y</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfrac><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mi>b</mml:mi></mml:mfrac></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>⇒</mml:mo><mml:mfenced open="{" close=""><mml:mtable class="array" columnalign="center"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>X</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi>X</mml:mi><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="normal">for</mml:mi><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi>y</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where the inequality limits the soil moisture increments as the Heaviside
function in Eq. (13). Second, the system on the
left of Eq. (14) is inverted to express the
original variables as a function of the transformed variables (reported on
the right of Eq. 14), similar to the inversion
done in Eq. (9). Third, we calculate the Jacobian
matrix,
              <disp-formula id="Ch1.E15" content-type="numbered"><label>15</label><mml:math id="M245" display="block"><mml:mrow><mml:mi mathvariant="bold">J</mml:mi><mml:mo>=</mml:mo><mml:mfenced open="[" close="]"><mml:mtable class="array" columnalign="center center"><mml:mtr><mml:mtd><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>X</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mtd><mml:mtd><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>X</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mtd><mml:mtd><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>=</mml:mo><mml:mfenced close="]" open="["><mml:mtable class="array" columnalign="center center"><mml:mtr><mml:mtd><mml:mn mathvariant="normal">1</mml:mn></mml:mtd><mml:mtd><mml:mn mathvariant="normal">0</mml:mn></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi>X</mml:mi><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            and the determinant of the Jacobian,
              <disp-formula id="Ch1.E16" content-type="numbered"><label>16</label><mml:math id="M246" display="block"><mml:mrow><mml:mfenced close="|" open="|"><mml:mi mathvariant="bold">J</mml:mi></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>X</mml:mi><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            Fourth, the joint PDF of the variables <inline-formula><mml:math id="M247" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is obtained using the
derived distribution approach,
              <disp-formula id="Ch1.E17" content-type="numbered"><label>17</label><mml:math id="M249" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>y</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mfenced open="|" close="|"><mml:mi mathvariant="bold">J</mml:mi></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where as in Sect. 2.1.2 all the terms on the
right-hand side only depend on <inline-formula><mml:math id="M250" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is given by
Eq. (6). Finally, to obtain the (marginal) PDF of
<inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the joint PDF in Eq. (17) is integrated
over all possible values of <inline-formula><mml:math id="M254" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>,
              <disp-formula id="Ch1.E18" content-type="numbered"><label>18</label><mml:math id="M255" display="block"><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">1</mml:mn></mml:munderover><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>X</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">d</mml:mi><mml:mi>X</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mi>b</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo mathsize="2.5em" mathvariant="italic">{</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:msup><mml:msup><mml:mfenced close="]" open="["><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mstyle scriptlevel="+1"><mml:mfrac><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:msup><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi>b</mml:mi></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:msup><mml:msup><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow><mml:mi>b</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mstyle scriptlevel="+1"><mml:mfrac><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:msup><mml:mfenced open="[" close=""><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>b</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mfenced close="" open="("><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mfenced close="" open=""><mml:mrow><mml:mfenced open="" close=")"><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mfenced close="]" open=""><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo mathsize="2.5em" mathvariant="italic">}</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            where on the right-hand side the normalized respiration pulse
<inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula> is introduced to simplify the notation, and
as before <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Due to the complexity of Eq. (18),
the long-term mean and standard deviation of <inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, respectively denoted by
<inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, need to be obtained via numerical integration.</p>
</sec>
<sec id="Ch1.S2.SS1.SSS4">
  <label>2.1.4</label><title>Rewetting pulses only dependent on soil moisture change</title>
      <p id="d1e5630">It is useful to consider respiration pulses that only depend on the soil
moisture increments; i.e., <inline-formula><mml:math id="M261" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>≫</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. In this case, Eq. (13) reduces to <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>y</mml:mi><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (i.e., <inline-formula><mml:math id="M263" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> – equivalent to always having a
completely dry soil before rewetting. Thanks to the simplicity of the
respiration pulse equation, <inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> can be obtained
as a derived distribution from the marginal PDF of the soil moisture changes
<inline-formula><mml:math id="M265" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>,
              <disp-formula id="Ch1.E19" content-type="numbered"><label>19</label><mml:math id="M266" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mi>y</mml:mi></mml:mfenced><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">1</mml:mn></mml:munderover><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>y</mml:mi><mml:mi mathvariant="normal">|</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">d</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi>y</mml:mi><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>y</mml:mi><mml:mi mathvariant="normal">|</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> is from Eq. (3). The <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> is then
obtained as
              <disp-formula id="Ch1.E20" content-type="numbered"><label>20</label><mml:math id="M269" display="block"><mml:mtable columnspacing="1em" class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>y</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mfenced close="|" open="|"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mstyle scriptlevel="+1"><mml:mfrac><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
            Thanks to the simplicity of Eq.<?pagebreak page4013?> (20), in this
particular case the long-term mean and standard deviation of the respiration
pulses are found analytically,

                  <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M270" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E21"><mml:mtd><mml:mtext>21</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E22"><mml:mtd><mml:mtext>22</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hbox\bgroup\fontsize{9.1}{9.1}\selectfont$\displaystyle}?><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:msqrt><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:mfenced><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">γ</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msqrt><?xmltex \hack{$\egroup}?><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              Thus, when respiration pulses are simply proportional to the soil moisture
change at rewetting, their mean only depends on the maximum pulse size
<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and the ratio of soil water storage capacity and mean
precipitation depth (i.e., the parameter group <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi>n</mml:mi><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mi mathvariant="italic">α</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>).</p>
</sec>
<sec id="Ch1.S2.SS1.SSS5">
  <label>2.1.5</label><title>Combining heterotrophic respiration during soil drying and at rewetting</title>
      <p id="d1e6214">The total mean heterotrophic respiration rate is given by the sum of the
mean respiration rate during soil drying
<inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> (Eq. 12; expressed in grams of carbon per square meter per day) and
the mean rate of respiration resulting from the sequence of rewetting pulses
over the study period (denoted by
<inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> and also expressed in grams of carbon per square meter per day). The
<inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> is calculated as the mean amount of respired carbon
(<inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> from Eq. 18, expressed in grams of carbon per square meter) divided
by the mean rainfall inter-arrival time, <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:math></inline-formula> (expressed in days),
              <disp-formula id="Ch1.E23" content-type="numbered"><label>23</label><mml:math id="M278" display="block"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>〉</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            The mean total heterotrophic respiration rate is then obtained as
              <disp-formula id="Ch1.E24" content-type="numbered"><label>24</label><mml:math id="M279" display="block"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo><mml:mo>+</mml:mo><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            In what follows, the ratio of respiration pulse to total respiration (i.e.,
<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>) will also be considered, to evaluate the overall contribution of
respiration pulses.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Data analysis</title>
<sec id="Ch1.S2.SS2.SSS1">
  <label>2.2.1</label><title>Laboratory incubation data for model calibration</title>
      <p id="d1e6412">The phenomenological respiration models in Eqs. (7)
and (13) require knowledge of three parameters: the
heterotrophic respiration rate at the soil field capacity (<inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>), the
maximum respiration pulse size (<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>), and the sensitivity of the
respiration pulse to the initial soil moisture (<inline-formula><mml:math id="M283" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>). To estimate these three
parameters, we selected datasets where both the soil moisture before
rewetting and the soil moisture increments were manipulated (Fischer,
2009; Guo et al., 2014; Lado-Monserrat et al., 2014). All data reported in
these three publications were used, except data from the litter-amended
soils in Lado-Monserrat et al. (2014) (we chose to focus on
“natural” conditions) and data from small (<inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula>) rewetting events
in Fischer (2009) (they exhibited small respiration peaks
despite nearly stable soil moisture). The reported respiration amounts at
rewetting were corrected to isolate the pulse size (<inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from the
respiration that would have occurred at constant soil moisture (<inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>).
This was done by calculating <inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> from control soil samples kept
constantly wet (Guo et al., 2014)
or from the post-pulse respiration rate before soil moisture started to
decline in experiments where drying was allowed in all samples
(Lado-Monserrat et al., 2014).
In contrast, respiration pulses had already been isolated by Fischer (2009). The last step of the parameter estimation
involved fitting Eq. (13) to the data using a
nonlinear least-square algorithm (<italic>fminunc</italic> function in MATLAB, R2018b,
MathWorks, Inc.).</p>
      <p id="d1e6510">Because respiration amounts and rates in these laboratory incubations were
expressed respectively in micrograms per gram and micrograms per gram per day
(or on a per-unit soil organic C basis), units were converted to gram per square meter
and gram per square meter per day using bulk densities and sampling depths reported in
the original publications (results are shown in Table 2).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e6516">Characteristics of the selected mineral and organic soil samples;
estimates of the respiration model parameters in Eq. (13) (<inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>: maximum respiration rate at the
soil field capacity, <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>: maximum respired carbon at rewetting) and
coefficients of determination (<inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) for the least-square fit of the data
(see also Fig. 2).</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.97}[.97]?><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Soil</oasis:entry>
         <oasis:entry colname="col3">Organic C</oasis:entry>
         <oasis:entry colname="col4">Bulk</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M293" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col9">Source</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">(g kg<inline-formula><mml:math id="M295" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col4">density</oasis:entry>
         <oasis:entry colname="col5">(gC m<inline-formula><mml:math id="M296" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M297" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col6">(gC m<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">(–)</oasis:entry>
         <oasis:entry colname="col8"/>
         <oasis:entry colname="col9"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">(g cm<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
         <oasis:entry colname="col9"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Mineral</oasis:entry>
         <oasis:entry colname="col2">Chelva sandy loam</oasis:entry>
         <oasis:entry colname="col3">10.9</oasis:entry>
         <oasis:entry colname="col4">1.44</oasis:entry>
         <oasis:entry colname="col5">0.79</oasis:entry>
         <oasis:entry colname="col6">0.89</oasis:entry>
         <oasis:entry colname="col7">0.17</oasis:entry>
         <oasis:entry colname="col8">0.74</oasis:entry>
         <oasis:entry colname="col9">Lado-Monserrat et al. (2014)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">soils</oasis:entry>
         <oasis:entry colname="col2">Tuéjar clay loam</oasis:entry>
         <oasis:entry colname="col3">26.6</oasis:entry>
         <oasis:entry colname="col4">1.19</oasis:entry>
         <oasis:entry colname="col5">0.13</oasis:entry>
         <oasis:entry colname="col6">0.25</oasis:entry>
         <oasis:entry colname="col7">0.14</oasis:entry>
         <oasis:entry colname="col8">0.92</oasis:entry>
         <oasis:entry colname="col9">Lado-Monserrat et al. (2014)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry rowsep="1" colname="col2">Brookston clay loam</oasis:entry>
         <oasis:entry rowsep="1" colname="col3">28.6</oasis:entry>
         <oasis:entry rowsep="1" colname="col4">1.24</oasis:entry>
         <oasis:entry rowsep="1" colname="col5">1.49</oasis:entry>
         <oasis:entry rowsep="1" colname="col6">8.79</oasis:entry>
         <oasis:entry rowsep="1" colname="col7">0.04</oasis:entry>
         <oasis:entry rowsep="1" colname="col8">0.76</oasis:entry>
         <oasis:entry rowsep="1" colname="col9">Guo et al. (2014)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Average of mineral soils</oasis:entry>
         <oasis:entry colname="col3">22.0</oasis:entry>
         <oasis:entry colname="col4">1.29</oasis:entry>
         <oasis:entry colname="col5">0.80</oasis:entry>
         <oasis:entry colname="col6">3.31</oasis:entry>
         <oasis:entry colname="col7">0.12</oasis:entry>
         <oasis:entry colname="col8"/>
         <oasis:entry colname="col9"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Organic</oasis:entry>
         <oasis:entry colname="col2">Neuglobsow sand</oasis:entry>
         <oasis:entry colname="col3">440</oasis:entry>
         <oasis:entry colname="col4">0.14</oasis:entry>
         <oasis:entry colname="col5">1.05</oasis:entry>
         <oasis:entry colname="col6">13.95</oasis:entry>
         <oasis:entry colname="col7">0.10</oasis:entry>
         <oasis:entry colname="col8">0.87</oasis:entry>
         <oasis:entry colname="col9">Fischer (2009)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">soils</oasis:entry>
         <oasis:entry colname="col2">Taura silty sand</oasis:entry>
         <oasis:entry colname="col3">390</oasis:entry>
         <oasis:entry colname="col4">0.15</oasis:entry>
         <oasis:entry colname="col5">1.26</oasis:entry>
         <oasis:entry colname="col6">11.23</oasis:entry>
         <oasis:entry colname="col7">0.10</oasis:entry>
         <oasis:entry colname="col8">0.86</oasis:entry>
         <oasis:entry colname="col9">Fischer (2009)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry rowsep="1" colname="col2">Rösa sand</oasis:entry>
         <oasis:entry rowsep="1" colname="col3">340</oasis:entry>
         <oasis:entry rowsep="1" colname="col4">0.18</oasis:entry>
         <oasis:entry rowsep="1" colname="col5">1.53</oasis:entry>
         <oasis:entry rowsep="1" colname="col6">18.61</oasis:entry>
         <oasis:entry rowsep="1" colname="col7">0.12</oasis:entry>
         <oasis:entry rowsep="1" colname="col8">0.83</oasis:entry>
         <oasis:entry rowsep="1" colname="col9">Fischer (2009)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Average of organic soils</oasis:entry>
         <oasis:entry colname="col3">390</oasis:entry>
         <oasis:entry colname="col4">0.16</oasis:entry>
         <oasis:entry colname="col5">1.28</oasis:entry>
         <oasis:entry colname="col6">14.60</oasis:entry>
         <oasis:entry colname="col7">0.11</oasis:entry>
         <oasis:entry colname="col8"/>
         <oasis:entry colname="col9"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <label>2.2.2</label><title>Field data for model validation</title>
      <p id="d1e7024">In addition to estimating the values of the three parameters in Eqs. (7) and (13), we validated
the results from the whole stochastic model by comparing the predicted
long-term mean heterotrophic respiration rates to observations along a
rainfall manipulation gradient in a semiarid steppe (Zhang
et al., 2017b, 2019). Briefly, the precipitation gradient was established by
excluding 30 % and 60 % of precipitation with rain shelters and by
increasing precipitation by 30 % and 60 % through irrigation. By design,
only precipitation amounts (not timing) were altered, resulting in five mean
rainfall depths <inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.6</mml:mn></mml:mrow></mml:math></inline-formula>, 3.9, 5.1, 6.4, and 7.6 mm. Mean
evapotranspiration rates, soil moisture, and heterotrophic respiration rates
along the rainfall gradient were obtained from the published supplementary
materials in Zhang et al. (2019) or from
the Dryad dataset by Zhang et al. (2017a).
Hydrologic parameters that were not provided were estimated as follows. The
maximum evapotranspiration rate (assumed equal to the potential
evapotranspiration) and the mean rainfall frequency were estimated from
May–August CRU data at the rainfall manipulation site (<inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4.3</mml:mn></mml:mrow></mml:math></inline-formula> mm d<inline-formula><mml:math id="M302" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.41</mml:mn></mml:mrow></mml:math></inline-formula> d<inline-formula><mml:math id="M304" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). The soil at the site has a sandy loam
texture (Bingwei Zhang, personal communication, 2019), and soil properties were
obtained accordingly: <inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.42</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M306" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.11</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.52</mml:mn></mml:mrow></mml:math></inline-formula>
(Table 2.1 in Rodriguez-Iturbe and Porporato, 2004). Finally,
the rooting depth <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula> m was estimated as the soil depth above<?pagebreak page4014?> which
approximately 70 % of belowground productivity occurs, based on data from
Zhang et al. (2020).</p>
      <p id="d1e7148">Regarding the parameters of the rewetting respiration function (Eq. 13), we assumed <inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M310" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M311" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M312" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula>. These values are deemed reasonable for mineral soils
based on Table 2 and accounting for a rooting depth about double the
sampling depth of the incubation experiments (which doubles the
<inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values in Table 2). Without specific information on respiration
pulse sizes, we let <inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> vary over a wide range. Additionally, we
tested the simplified respiration model (Sect. 2.1.4), which does not require any assumption on
<inline-formula><mml:math id="M315" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula>, against the same total heterotrophic respiration dataset.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Dependence of heterotrophic respiration at rewetting on soil moisture</title>
      <p id="d1e7264">Laboratory incubation data were used to parameterize the functions linking
heterotrophic respiration to soil moisture. As expected, the respiration
pulses at rewetting depend on both rewetting intensity (<inline-formula><mml:math id="M316" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>) and pre-wetting
soil moisture (<inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), and this relation is well-characterized by Eq. (13) (Fig. 2). In Fig. 2, respiration pulses at
rewetting are normalized by the amount of organic C in each soil to
facilitate comparisons. However, after accounting for variations in organic
C content, bulk density, and soil layer depth, the values of <inline-formula><mml:math id="M318" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> per unit ground area are higher in the organic soils than in
mineral soils (Table 2) and so is the ratio between <inline-formula><mml:math id="M320" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. The sensitivity parameter <inline-formula><mml:math id="M322" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> shows milder variation across soils
than the other parameters, with an average value <inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula>. Based on
this data analysis, in the following theoretical exploration we set
parameter values intermediate between the extremes reported in Table 2
(i.e., <inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M325" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M326" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M327" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and
<inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula>). In addition, we explore how the contribution of respiration pulses
varies between mineral vs. organic soils, using the average parameter values
reported in Table 2.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e7460">Relations between respiration pulse size (<inline-formula><mml:math id="M330" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, normalized by
soil organic C content) and pre-wetting soil moisture (<inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and soil
moisture increment at rewetting (<inline-formula><mml:math id="M332" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>), for six soils; top row: mineral soils;
bottom row: organic soils.
Symbols represent measured respiration pulses, and surfaces are fitted
<inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> functions from Eq. (13) (soil
characteristics, fitting parameters, and data sources are reported in Table 2).</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f02.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>General model behavior</title>
      <p id="d1e7517">Figure 3 shows two examples of the simulated trajectories of soil moisture
and heterotrophic respiration, for contrasting climatic conditions (more
frequent precipitation in the left panels than in the right panels). It is
important to note that in this comparison across climatic conditions (and in
the comparisons that follow), the maximum respiration <inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are fixed, while in reality they are likely proportional to soil
organic C availability, which in turn is the result of a long-term and soil-moisture-dependent balance between C inputs from vegetation and respiration
(this limitation is discussed in Sect. 4.2).
Respiration rates during dry periods follow soil moisture changes, declining
as soil dries and returning to higher levels at rewetting (Fig. 3b, f). In
addition to this rewetting-induced restoration of high respiration rates,
rewetting causes <inline-formula><mml:math id="M336" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission pulses, represented by vertical bars.
Under the wetter climate (Fig. 3b), respiration pulses are more frequent
than under the dry climate (Fig. 3f) because of the higher precipitation
frequency. However, most of the respiration pulses are small because soil
moisture increments at rewetting are often limited by the available soil
pore space, and a relatively large fraction of precipitation is lost to
runoff and deep percolation. In contrast, under dryer conditions, changes in
soil moisture are large because on average soil moisture is low and the pore
space is rarely filled up completely. As a result, the fewer respiration
pulses can be larger under dry than under wet conditions.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e7565">Example of the dynamics of soil moisture and respiration for a wet <bold>(a–d)</bold> and a dry climate <bold>(e–h)</bold>. Top panels <bold>(a)</bold> and <bold>(e)</bold> show the simulated
trajectories of normalized soil moisture <inline-formula><mml:math id="M337" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>; the middle panels <bold>(b)</bold> and <bold>(f)</bold> show the
trajectories of respiration during dry periods (red solid curves, <inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
and the respiration pulse at rewetting (black vertical bars, <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, on the
same scale despite different units); the bottom panels <bold>(c)</bold>, <bold>(d)</bold>, <bold>(g)</bold>, and <bold>(h)</bold> show the
probability density functions of <inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>, respectively) overlapped to the histograms
of the simulated data. In this figure, <inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M345" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
<inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M347" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M348" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> d<inline-formula><mml:math id="M352" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and <inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula> and 0.1 d<inline-formula><mml:math id="M354" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(<bold>a</bold>–<bold>d</bold> and <bold>e</bold>–<bold>h</bold>, respectively).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f03.png"/>

        </fig>

      <?pagebreak page4016?><p id="d1e7864">The bottom panels in Fig. 3 show the PDF of respiration for the same two
climatic conditions analyzed in the upper panels. While the PDF of <inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is
positively skewed regardless of climate (but with heavier tails under dry
conditions, Fig. 3c, g), the PDF of <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is strongly affected by
climatic conditions – the probability of high values for <inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is higher
under wet conditions (negatively skewed PDF) and lower under dry conditions
(positively skewed PDF, Fig. 3d, h). This pattern is caused by the
prevalence of high soil moisture values in the wet climate scenario, which
maintain relatively high <inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Figure 3c, d, g, h also show that the
theoretical PDF (Eqs. 11 and
18) matches perfectly to the distribution of the
numerically simulated data. The shape of the theoretical PDF of <inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in
Fig. 3h might seem incorrect, as it increases sharply at high respiration
values. This increase is due to the flat derivative of the <inline-formula><mml:math id="M360" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>–soil
moisture relation (Eq. 7), which causes an
asymptote in the PDF at <inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. 11). However, the area under this spike is
vanishingly small when climatic conditions are dry as in the example of
Fig. 3e–h, so that it is highly unlikely to have any respiration value
around <inline-formula><mml:math id="M362" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Model test under field conditions</title>
      <p id="d1e7981">Field data were used to test whether the hydrologic and soil respiration models
could capture trends in the mean evapotranspiration and heterotrophic
respiration along a precipitation gradient (Fig. 4). The trend of the mean
evapotranspiration rate with increasing mean rainfall depth was captured
reasonably well (Fig. 4a), considering that no formal calibration was
conducted, and all parameters were estimated based on independent
information. Similarly, the model correctly predicts the trend in soil
moisture (not shown), but with an overestimation bias around 0.05–0.1 (in
terms of normalized soil moisture <inline-formula><mml:math id="M363" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>). This overestimation is expected,
because soil moisture had been measured in the drier top 0.1 m of soil,
while the model considers average soil moisture over a 0.2 m depth. Also the
trend in total heterotrophic respiration is predicted correctly by the full
model, which explains 77 % of the variance in the respiration data (black
curve in Fig. 4b). Calibrating the two parameters of Eq. (13) and <inline-formula><mml:math id="M364" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> would allow a better
fit, but since the goal here is to provide a qualitative model validation
and not a quantitative performance assessment, we deem the model suitable
for the following theoretical analyses.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e8009">Comparison of model results (curves) and observations (open
circles) along an experimental rainfall gradient where the mean
precipitation depth (<inline-formula><mml:math id="M365" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) was manipulated: <bold>(a)</bold> mean
evapotranspiration rate <inline-formula><mml:math id="M366" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>E</mml:mi><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(b)</bold> mean total heterotrophic respiration rate
<inline-formula><mml:math id="M367" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, and <bold>(c)</bold> fraction of the total heterotrophic respiration rate due to
rewetting pulses <inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>. In panels <bold>(b)</bold> and <bold>(c)</bold>, the dotted curves and shaded area indicate the
variation caused by changes in <inline-formula><mml:math id="M369" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> between 5 and 35 g m<inline-formula><mml:math id="M370" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> around
the central value (solid curves) of 25 g m<inline-formula><mml:math id="M371" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; the red curves indicate
results using the simplified rewetting respiration model (Eq. 21). Parameter values are described in Sect. 2.2.2.</p></caption>
          <?xmltex \igopts{width=128.037402pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f04.png"/>

        </fig>

      <p id="d1e8137">We also tested the simpler version of the model, in which respiration pulses
only depend on the soil moisture increment. Without the effect of
pre-wetting soil moisture, this version predicts higher mean respiration
than the full model (red lines in Fig. 4b) and a higher contribution of
rewetting respiration to the total heterotrophic respiration (red lines in
Fig. 4c).</p>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Dependence of heterotrophic respiration on rainfall statistical properties</title>
      <p id="d1e8148">Figure 5 shows the predicted effect of precipitation regimes on
heterotrophic respiration during drying and at rewetting (Fig. 5a, b) on
the total heterotrophic respiration rate (Fig. 5c) and on the fraction of
respiration contributed by rewetting pulses (Fig. 5d). As in Fig. 3,
<inline-formula><mml:math id="M372" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are fixed to focus on the role
of climatic conditions, so the patterns shown in Fig. 5 should be
interpreted as changes of mean respiration rates along gradients of
precipitation frequency (<inline-formula><mml:math id="M374" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>) and mean depth (<inline-formula><mml:math id="M375" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) for given
soil organic C stocks. Because in this minimal model the mean precipitation
rate is given by <inline-formula><mml:math id="M376" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>P</mml:mi><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:math></inline-formula>, precipitation can be increased by assuming more frequent
rain events (i.e., increasing <inline-formula><mml:math id="M377" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>), larger events (i.e., increasing
<inline-formula><mml:math id="M378" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>), or both. Any of these changes increase mean respiration during
drying and at rewetting (Fig. 5a, b). As
<inline-formula><mml:math id="M379" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> increases with precipitation more than
<inline-formula><mml:math id="M380" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, the relative contribution of respiration pulses to the total respiration
rate, <inline-formula><mml:math id="M381" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, tends to decrease from drier to wetter conditions, especially when rain
events become more frequent (as opposed to more intense) (Fig. 5d). This
pattern is caused by the relatively larger respiration pulses occurring when
soils<?pagebreak page4017?> are dry and rewetting causes large soil moisture increments (compare
examples in Fig. 3b and f). Moreover, the relative change of
<inline-formula><mml:math id="M382" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> is smaller than the change in
<inline-formula><mml:math id="M383" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M384" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> as precipitation regimes are varied.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e8353">Effect of precipitation statistical properties (mean event
frequency <inline-formula><mml:math id="M385" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and depth <inline-formula><mml:math id="M386" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) on the mean
heterotrophic respiration rates during dry periods
<inline-formula><mml:math id="M387" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> <bold>(a)</bold> and at rewetting <inline-formula><mml:math id="M388" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> <bold>(b)</bold>, the mean total respiration rate
<inline-formula><mml:math id="M389" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> <bold>(c)</bold>, and the fraction of the total heterotrophic respiration rate due
to rewetting pulses <inline-formula><mml:math id="M390" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> <bold>(d)</bold>. The white contour curves indicate combinations of <inline-formula><mml:math id="M391" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>
and <inline-formula><mml:math id="M392" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> that generate different annual precipitation rates
(<inline-formula><mml:math id="M393" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>P</mml:mi><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn></mml:mrow></mml:math></inline-formula>, 0.5, 1, and 2 m yr<inline-formula><mml:math id="M394" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from dotted to
solid lines). Other parameter values: <inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M396" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
<inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> gC m<inline-formula><mml:math id="M398" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M399" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msub><mml:mi>Z</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula> m, <inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mi mathvariant="normal">l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.7</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mo>max⁡</mml:mo></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.0037</mml:mn></mml:mrow></mml:math></inline-formula> m d<inline-formula><mml:math id="M406" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f05.png"/>

        </fig>

      <p id="d1e8687">Not only the mean respiration rates, but
also the variability of both respiration rates during drying and respiration
pulses at rewetting vary with hydroclimatic conditions (Fig. 6). The standard deviation of <inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> exhibits
maxima at intermediate <inline-formula><mml:math id="M408" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> when <inline-formula><mml:math id="M409" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is fixed and at
intermediate <inline-formula><mml:math id="M410" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> when <inline-formula><mml:math id="M411" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> is fixed (Fig. 6a). This pattern is
due to a shift in the shape of the PDF of <inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> when moving from dry to wet
conditions. Under dry conditions, the PDF of <inline-formula><mml:math id="M413" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> has relatively low
variance and is negatively skewed (Fig. 3h); as conditions become wetter
the PDF flattens and the variance increases, and finally under wet
conditions the PDF transitions again to a low-variance but positively
skewed PDF (Fig. 3d). In contrast, the PDF of <inline-formula><mml:math id="M414" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is always positively
skewed, with variance decreasing with increasing rainfall frequency (Fig. 6b; compare examples in Fig. 3c and g). However, increasing <inline-formula><mml:math id="M415" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> for
fixed <inline-formula><mml:math id="M416" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is predicted to increase the variance of <inline-formula><mml:math id="M417" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The
coefficients of variation (CV) of <inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M419" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> vary less than the
corresponding standard deviations and tend to decrease as conditions move
from dry to wet (Fig. 6c, d). Specifically, the CV of <inline-formula><mml:math id="M420" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> decreases
with both increasing <inline-formula><mml:math id="M421" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and increasing <inline-formula><mml:math id="M422" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>. In contrast, the
CV of <inline-formula><mml:math id="M423" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is nearly independent of <inline-formula><mml:math id="M424" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> but decreases with
increasing <inline-formula><mml:math id="M425" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e8865">Effect of precipitation statistical properties (mean event
frequency <inline-formula><mml:math id="M426" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and depth <inline-formula><mml:math id="M427" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) on the standard
deviations of heterotrophic respiration rates during dry periods
<inline-formula><mml:math id="M428" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(a)</bold> and respiration pulses at
rewetting <inline-formula><mml:math id="M429" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(b)</bold>, on the
coefficients of variations of respiration rates during dry periods
<inline-formula><mml:math id="M430" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">CV</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(c)</bold>, and on respiration pulses at
rewetting <inline-formula><mml:math id="M431" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">CV</mml:mi><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(d)</bold>. The white contour
curves indicate combinations of <inline-formula><mml:math id="M432" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M433" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>
that generate different annual precipitation rates
(<inline-formula><mml:math id="M434" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>P</mml:mi><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn></mml:mrow></mml:math></inline-formula>, 0.5, 1, and 2 m yr<inline-formula><mml:math id="M435" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from dotted to
solid lines). Other parameter values are as in Fig. 5.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>Effects of rainfall intensification and organic C availability on
heterotrophic respiration</title>
      <p id="d1e9019">Results shown in Figs. 5 and 6 are based on average respiration model
parameters; here, we explore how changing organic C content from mineral to
organic soils affects the contribution of rewetting pulses to total soil
heterotrophic respiration. We also focus on changes in respiration patterns
along gradients of rainfall intensification, i.e., decreasing precipitation
frequency <inline-formula><mml:math id="M436" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> while precipitation event depth <inline-formula><mml:math id="M437" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> is increased
and total precipitation is kept fixed (as along the white contour curves in
Figs. 5 and 6). Figure 7 shows that rainfall intensification decreases
<inline-formula><mml:math id="M438" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> (Fig. 7a) but increases
<inline-formula><mml:math id="M439" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> (Fig. 7b), regardless of soil organic C availability (black vs. gray
curves) and total precipitation (dashed vs. solid curves). However, for a
given total precipitation, organic soils (gray curves) exhibit both higher
<inline-formula><mml:math id="M440" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> and higher <inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> than mineral soils (black curves), due to their higher <inline-formula><mml:math id="M442" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (Table 2). As a result, in organic soils, the contribution of respiration pulses
can be as high as 20 % of the total heterotrophic respiration, whereas in
mineral soils it tends to be lower than 10 %. Moreover, in both soils,
higher precipitation increases
<inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> while decreasing <inline-formula><mml:math id="M444" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> (compare solid vs. dashed curves).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e9184"><bold>(a)</bold> Total heterotrophic respiration
<inline-formula><mml:math id="M445" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> and <bold>(b)</bold> fraction of the total heterotrophic respiration rate due to
rewetting pulses, <inline-formula><mml:math id="M446" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">r</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mo>〈</mml:mo><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, as a function of mean precipitation event frequency <inline-formula><mml:math id="M447" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>,
for given total precipitation (i.e., <inline-formula><mml:math id="M448" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>=</mml:mo><mml:mo>〈</mml:mo><mml:mi>P</mml:mi><mml:mo>〉</mml:mo><mml:mo>/</mml:mo><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:math></inline-formula>), and for both mineral and organic soils. The respiration model parameters
are reported in Table 2, and other parameter values are as in Fig. 5.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/17/4007/2020/bg-17-4007-2020-f07.png"/>

        </fig>

</sec>
</sec>
<?pagebreak page4018?><sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
      <p id="d1e9277">Heterotrophic respiration fluctuates at multiple temporal scales in response
to hydroclimatic variability (Messori et al., 2019;
Rubio and Detto, 2017) – from interannual variations due to climatic
anomalies and extreme events (Reichstein
et al., 2013), to seasonal variations partly linked to plant activity
(Zhang et al., 2018), to short-term
fluctuations induced by soil drying and rewetting (Daly et al.,
2009). Here we focus on respiration fluctuations during drying–wetting
cycles and how they are affected by precipitation regimes. Differently from
most other modeling approaches to describe these dynamics, we develop a
probabilistic model with analytical solutions for the probability density
function of respiration rate (discussed in Sect. 4.1). For the sake of analytical tractability, this
model rests on important assumptions (Sect. 4.2),
but despite its simplicity it has the potential to assess the effect of
precipitation variability (and its expected changes) on heterotrophic
respiration (Sect. 4.3).</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Comparison with previous stochastic approaches</title>
      <p id="d1e9287">Most biogeochemical models assume that heterotrophic respiration (and other
processes) depend on a generic soil property <inline-formula><mml:math id="M449" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula> following an
empirical function <inline-formula><mml:math id="M450" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">φ</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> (Bauer
et al., 2008; Moyano et al., 2013). As <inline-formula><mml:math id="M451" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula> changes through time
(e.g., soil moisture and temperature), the biogeochemical rate
associated with <inline-formula><mml:math id="M452" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula> also varies. Thus, the biogeochemical models use the
function <inline-formula><mml:math id="M453" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">φ</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> to convert measured time series of soil
moisture and other environmental variables into biogeochemical rates. The
different approach we follow here consists in linking a known probability
density of <inline-formula><mml:math id="M454" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula> to the probability density of the function <inline-formula><mml:math id="M455" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">φ</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> to capture the propagation of the statistical properties of
<inline-formula><mml:math id="M456" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula> to <inline-formula><mml:math id="M457" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">φ</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>. This can be done by the derived
distribution approach, as in Eq. (8). This approach
has been used to investigate gaseous nitrogen emissions in response to soil
moisture fluctuations (Ridolfi et al., 2003), but
the only example studying soil heterotrophic respiration rate we are aware
of focused on respiration responses to temperature fluctuations
(Sierra et al., 2011). These approaches provide simple
and mathematically elegant solutions but have so far been limited to the
effect of a single driver of the biogeochemical flux of interest. The
responses of heterotrophic respiration to changes in soil moisture are more
complex because rewetting pulses depend on both soil moisture increment and
pre-wetting soil moisture (Fig. 2), requiring the solution of a bivariate
stochastic process. Thus, our approach – by accounting for both these
effects – is more general and applicable along gradients where the
statistical properties describing the precipitation regime vary
significantly (Fig. 4).</p>
      <p id="d1e9370">A previous stochastic approach focused on the <inline-formula><mml:math id="M458" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration in the
pore space instead of respiration rates (Daly et al., 2008). Observations show
that <inline-formula><mml:math id="M459" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration increases rapidly after rainfall and then
decreases following a negative exponential function. This dynamic can be
described as a stochastic process where <inline-formula><mml:math id="M460" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration is the random
variable and precipitation represents the stochastic forcing
(Daly et al., 2008). With this
approach, the long-term mean <inline-formula><mml:math id="M461" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration was found to depend on
the average rainfall rate (<inline-formula><mml:math id="M462" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="italic">α</mml:mi></mml:mrow></mml:math></inline-formula>), while the standard deviation
of <inline-formula><mml:math id="M463" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration depends on <inline-formula><mml:math id="M464" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:msup><mml:mi mathvariant="italic">α</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. This indicates
that rainfall intensity (in terms of mean event depth <inline-formula><mml:math id="M465" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) plays a
more important role than rainfall frequency in driving the variability of
soil <inline-formula><mml:math id="M466" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration. Soil respiration was shown to be approximately
proportional to <inline-formula><mml:math id="M467" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration in the pore space over a broad range
of concentrations (Daly et al., 2008),
so that respiration statistics are also expected to scale with rainfall
statistics in the same way as soil <inline-formula><mml:math id="M468" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations. This result is
consistent with our finding that all components of heterotrophic respiration
increase with both <inline-formula><mml:math id="M469" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M470" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> (Fig. 5).</p>
      <p id="d1e9507">Numerical process-based models have also been driven by randomly generated
rainfall time series (e.g., Tang et al.,
2019). These models do not allow analytical solutions for the
respiration statistical properties to be found, but they offer insights into the individual
processes affecting these properties. For scenarios of constant total
rainfall and variable rain event frequency, Tang et al. (2019) found that rainfall intensification
increased heterotrophic respiration in a semi-arid grassland, even though in
their simulations soil organic C stocks<?pagebreak page4019?> also slightly increased due to
higher plant productivity. This result differs from our finding that total
heterotrophic respiration decreases with rainfall intensification (moving
right to left along the curves in Fig. 7a) and was likely caused by how
plant productivity and its feedback to soil organic C were modeled in their
study.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Methodological limitations</title>
      <p id="d1e9518">Three model assumptions can alter the interpretation of our results: (i) that
heterotrophic respiration pulses can be regarded as instantaneous, (ii) that
the two parameters <inline-formula><mml:math id="M471" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M472" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are independent of climatic and
vegetation conditions, and (iii) that hydroclimatic conditions are
statistically stationary.</p>
      <p id="d1e9553">Respiration pulses are modeled as instantaneous events of <inline-formula><mml:math id="M473" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission
with a given size (Sect. 2.1.3). While
mathematically convenient, rewetting respiration pulses are known to last
for a few days after the rewetting has ended. Indeed, when analyzing
laboratory incubation data, the pulse size is generally calculated by
integrating through time the respiration rates above the rate occurring at
stable soil moisture. The integration window ranges between 2 and 3 d (e.g., Fischer, 2009). This simplified
approach to separate the actual rewetting pulse from the respiration rate at
stable soil moisture requires some caution when rainfall events are
frequent. In that case, pulses would overlap rather than being distinct.
Moreover, with frequent rainfall, respiration could be inhibited due to
water logging (Moyano et
al., 2013; Rubio and Detto, 2017), and no respiration pulse might occur.
Thus, to avoid these issues, our equations should not be used in wet
environments with <inline-formula><mml:math id="M474" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula> d<inline-formula><mml:math id="M475" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>
      <p id="d1e9591">We calculated the statistical properties of the heterotrophic respiration
rate, but we did not consider the dynamics of the soil organic matter and
plants that supply resources for microbial growth and respiration. Widely
different precipitation amounts and distributions such as those depicted in
Figs. 5 and 6 are associated with different plant communities, whose
productivity increases along gradients of precipitation (Huxman
et al., 2004; Luyssaert et al., 2007), providing litter and root exudates
whose C is eventually stabilized into soil organic matter. Indeed, soil
organic C stocks increase with increasing mean annual precipitation
(Guo et al., 2006). Hence, soil
organic matter probably varies along the axes of Figs. 5 and 6, which are
instead interpreted here as purely climatic gradients. Such variations in
organic matter content would affect the maximum respiration rate and pulse
size, <inline-formula><mml:math id="M476" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M477" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow><mml:mi mathvariant="normal">r</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">max</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (e.g., compare mineral and organic soils in
Table 2). Because the mean respiration rates scale with the maximum rates
(as apparent analytically from Eq. 21), it is
reasonable to expect that higher organic matter content along precipitation
gradients increases the sensitivity of respiration to changes in
precipitation compared to predictions in Fig. 5. Indeed, even when keeping
precipitation constant while varying the frequency and depth of
precipitation events, the variations in total heterotrophic respiration are
larger in organic soils than in mineral soils (Fig. 7a).</p>
      <p id="d1e9626">Moreover, soil C substrates might be depleted through multiple drying and
rewetting events – a behavior we do not consider in the proposed
statistically stationary model. While some experiments show sustained
rewetting pulses (Miller
et al., 2005; Xiang et al., 2008), others show reduced total heterotrophic
respiration with increasing frequency of drying and rewetting, possibly due
to substrate depletion (Shi and Marschner,
2014). To capture these dynamics, a more complex model describing the
changes in substrate and microbial compartments would be needed (e.g.,
Brangarí et al., 2018; Lawrence et al., 2009; Tang et al., 2019) at the
cost of losing the analytical tractability.</p>
      <p id="d1e9630">Our focus in this contribution is on heterotrophic respiration, but the data
we used to parameterize the model are from laboratory studies without
plants. Therefore, our heterotrophic respiration estimates neglect
contributions from fresh C inputs from roots to the rhizosphere (Finzi
et al., 2015; Kuzyakov and Gavrichkova, 2010). However, the timing of
rhizodeposition depends on plant activity, which in turn depends on previous
environmental conditions – differently from soil microbes that respond to
soil moisture changes rapidly, plant responses integrate previous conditions,
thereby partly decoupling root activity from current soil moisture. It is
thus nontrivial to include rhizosphere processes in the current framework.</p>
      <p id="d1e9633">In addition to these limitations, our results should also be interpreted
with caution when rainfall seasonality is important, because the assumption
of stochastic stationarity (Sect. 2.1.1) may not
be met, requiring the derivation of a different probability density function
of soil moisture (e.g., Vico et al., 2017).
Nevertheless, our results will still hold for parts of the year when the
rainfall regime is relatively stable.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>How are the statistical properties of heterotrophic respiration varying with changing precipitation regimes?</title>
      <?pagebreak page4020?><p id="d1e9644">The axes of Figs. 5 and 6 can be interpreted in terms of changes in
precipitation patterns caused by ongoing climatic changes. If rainfall in a
semiarid or mesic environment increases (due to either more frequent or
larger events), heterotrophic respiration also increases (Yan
et al., 2014; Zhang et al., 2019) – this is not surprising as soils become
on average wetter, removing water limitation and promoting microbial
activity. These observations are consistent with our findings that the mean
respiration pulse at rewetting and respiration during drying increases with
increasing <inline-formula><mml:math id="M478" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M479" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>, or their product – i.e., total
precipitation. However, the variability in respiration does not always
change monotonically with increasing rainfall. Figure 6b shows that the
standard deviation of the respiration pulses increases with more intense
(higher <inline-formula><mml:math id="M480" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>) and less frequent (lower <inline-formula><mml:math id="M481" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>) rainfall. In
contrast, the standard deviation of the respiration rate during drying,
<inline-formula><mml:math id="M482" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, peaks at intermediate <inline-formula><mml:math id="M483" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M484" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> and declines
thereafter because the respiration response is flat and thus has higher
variance at intermediate wetness (Eq. 7; Fig. 6a). Therefore, higher precipitation as driven by increasing <inline-formula><mml:math id="M485" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> or
<inline-formula><mml:math id="M486" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is expected to increase the respiration pulses (Fig. 5b) and
their variability (Fig. 6b), while decreasing their contribution to the
total heterotrophic respiration (Fig. 5d).</p>
      <p id="d1e9715">It is perhaps more interesting to understand respiration responses to
changes in rainfall patterns for given total rainfall amounts. When <inline-formula><mml:math id="M487" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M488" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> are changed simultaneously while keeping their product
fixed (moving along the white curves in Figs. 5–6; or along the <inline-formula><mml:math id="M489" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis in
Fig. 7), the mean respiration pulse at rewetting and the standard
deviations of both respiration components increase with more intermittent
and intense rainfall events. In experimental rainfall manipulations that
mimic the predicted climatic changes, increased variability in soil moisture
associated with more intense but less frequent precipitation events
decreases total soil respiration (Harper et al.,
2005). This observation is consistent with our result that the mean total
heterotrophic respiration decreases with rainfall intensification while
maintaining a given mean precipitation rate (i.e., moving right to left
along the curves in Fig. 7a). Our result is explained by the higher runoff
and deep percolation losses predicted by the soil hydrologic model when
precipitation events are large but rare (Rodriguez-Iturbe and
Porporato, 2004). These water losses cause soil moisture to be on average
lower as the precipitation regime becomes more intermittent – a pattern also
confirmed empirically in rainfall manipulation experiments
(Harper et al.,
2005). Our approach neglects the lower plant C inputs and contributions to
total soil respiration under a more intermittent precipitation regime
(Harper et al.,
2005), which further reduces the total (combined autotrophic and
heterotrophic) soil respiration rate.</p>
      <p id="d1e9739">We also found that the contribution of rewetting pulses to the total
heterotrophic respiration increases when rainfall becomes more intermittent
and rainfall events larger (i.e., moving right to left along the curves in
Fig. 7b). This result is consistent with observations in a temperate
steppe (Yan et al., 2014). The
rewetting pulse contribution is also larger in organic soils compared to
mineral soils (gray vs. black curves in Fig. 7) – this effect is expected,
because more C can be mobilized by drying and rewetting cycles in C-rich
soils (Canarini et al., 2017). We can
thus surmise that climatic changes causing longer dry period and more
intense rainfall events (IPCC, 2012) will
increase the role of pulse responses, including not only respiration but
also nitrogen mineralization pulses that could release nitrogen at a time
when plant uptake is low. In turn, this can cause a decoupling of nitrogen
supply and demand, with possible negative consequences for ecosystem
productivity (Augustine and
McNaughton, 2004; Dijkstra et al., 2012).</p>
      <p id="d1e9742">Our findings are based on time-invariant relations between heterotrophic
respiration and soil moisture, but temperature and other environmental
conditions also affect microbial activity – in part directly and in part
indirectly via rhizodeposition – raising the question of how our results
could be impacted by other respiration-controlling factors. As a first
approximation, temperature could be assumed to alter directly both
respiration rates during drying and respiration pulses in a similar way. This
implies that our results would hold even under fluctuating temperatures, at
least during the growing season, when temperature variations are limited and
precipitation can be described by a simple marked Poisson process (Sect. 2.1.1). However, a different modeling approach
would be needed to quantify the mean heterotrophic respiration rate during
seasons with frequent rainfall events, when respiration pulses are likely to
be less important and anaerobic conditions (here neglected) could play a
role. As the timescale expands from the growing season to the whole year,
seasonal fluctuations in plant activity that delay the supply of C
substrates to microbes will also play a role (Finzi
et al., 2015; Kuzyakov and Gavrichkova, 2010), leading to a hierarchy of
responses at multiple timescales – a more complex problem than the one
addressed in this contribution.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e9755">Heterotrophic respiration depends nonlinearly on soil moisture – not only
does it follow soil moisture during a dry period, but it also responds
rapidly to rewetting. These rewetting responses occur in the form of pulses
of <inline-formula><mml:math id="M490" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> whose size increases with increasing soil moisture increment and
decreasing pre-wetting soil moisture. We used this relation between
respiration pulses and soil moisture to analytically characterize the
statistical properties of respiration rates as a function of the statistical
properties of the rainfall events that drive soil moisture changes.
Consistent with empirical evidence, our model predicts that dryer climatic
conditions (either lower rainfall depths or longer dry periods between two
rain events) lower total heterotrophic respiration. More interestingly, we
showed that the contribution of rewetting pulses to the total heterotrophic
respiration increases in dryer climates, but also when the precipitation
regimes shift towards more intermittent and intense events (even at constant
total average rainfall). Therefore, our results suggest that the expected
intensification of precipitation will increase the role of rewetting
respiration pulses in the ecosystem C budgets.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e9773">All data used in this study are published and available in the original
publications and their supplementary materials (see Table 2 for references
on the laboratory data and Sect. 2.2.2 for
references on the field data).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e9779">Stefano Manzoni and Giulia Vico conceptualized the study; Stefano Manzoni, Giulia Vico, and Amilcare Porporato developed the theory; TF
provided and discussed data; Arjun Chakrawal analyzed data and prepared Fig. 2; Stefano<?pagebreak page4021?> Manzoni
prepared the other figures and drafted the manuscript; all authors discussed
the study ideas and read and commented on the manuscript.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e9785">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e9791">We thank Antonio L. Lidón and Bingwei Zhang for
sharing data and assisting in their interpretation and Thomas Wutzler and
the two anonymous reviewers for their constructive comments.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e9796">This research has been supported by the Swedish Research Council Vetenskapsrådet (grant nos. 2016-04146 and 2016-04910) and the Swedish Research Council Formas (grant nos. 2018-00425 and 2018-00968).<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>The article processing charges for this open-access <?xmltex \hack{\newline}?> publication were covered by Stockholm University.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e9807">This paper was edited by Frank Hagedorn and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>Rainfall intensification increases the contribution of rewetting pulses to soil heterotrophic respiration</article-title-html>
<abstract-html><p>Soil drying and wetting cycles promote carbon (C) release through
large heterotrophic respiration pulses at rewetting, known as the <q>Birch</q>
effect. Empirical evidence shows that drier conditions before rewetting and
larger changes in soil moisture at rewetting cause larger respiration
pulses. Because soil moisture varies in response to rainfall, these
respiration pulses also depend on the random timing and intensity of
precipitation. In addition to rewetting pulses, heterotrophic respiration
continues during soil drying, eventually ceasing when soils are too dry to
sustain microbial activity. The importance of respiration pulses in
contributing to the overall soil heterotrophic respiration flux has been
demonstrated empirically, but no theoretical investigation has so far
evaluated how the relative contribution of these pulses may change along
climatic gradients or as precipitation regimes shift in a given location. To
fill this gap, we start by assuming that heterotrophic respiration rates
during soil drying and pulses at rewetting can be treated as random
variables dependent on soil moisture fluctuations, and we develop a stochastic
model for soil heterotrophic respiration rates that analytically links the
statistical properties of respiration to those of precipitation. Model
results show that both the mean rewetting pulse respiration and the mean
respiration during drying increase with increasing mean precipitation.
However, the contribution of respiration pulses to the total heterotrophic
respiration increases with decreasing precipitation frequency and to a
lesser degree with decreasing precipitation depth, leading to an overall
higher contribution of respiration pulses under future more intermittent and
intense precipitation. Specifically, higher rainfall intermittency at
constant total rainfall can increase the contribution of respiration pulses
up to  ∼ 10&thinsp;% or 20&thinsp;% of the total heterotrophic respiration in
mineral and organic soils, respectively. Moreover, the variability of both
components of soil heterotrophic respiration is also predicted to increase
under these conditions. Therefore, with future more intermittent
precipitation, respiration pulses and the associated nutrient release will
intensify and become more variable, contributing more to soil biogeochemical
cycling.</p></abstract-html>
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