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  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-18-1049-2021</article-id><title-group><article-title>Impacts of biogenic polyunsaturated aldehydes on metabolism <?xmltex \hack{\break}?>and community
composition of particle-attached bacteria in <?xmltex \hack{\break}?>coastal hypoxia</article-title><alt-title>Impacts of PUAs on particle-attached bacteria in coastal hypoxia</alt-title>
      </title-group><?xmltex \runningtitle{Impacts of PUAs on particle-attached bacteria in coastal hypoxia}?><?xmltex \runningauthor{Z.~Wu et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Wu</surname><given-names>Zhengchao</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2 aff3">
          <name><surname>Li</surname><given-names>Qian P.</given-names></name>
          <email>qianli@scsio.ac.cn</email>
        <ext-link>https://orcid.org/0000-0002-9846-3243</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Ge</surname><given-names>Zaiming</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Huang</surname><given-names>Bangqin</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Dong</surname><given-names>Chunming</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9458-9172</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>State Key Laboratory of Tropical Oceanography, South China Sea
Institute of Oceanology, <?xmltex \hack{\break}?>Chinese Academy of Sciences, Guangzhou, China</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>College of Marine Science, University of the Chinese Academy of
Sciences, Beijing, China</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Fujian Provincial Key Laboratory of Coastal Ecology and Environmental
Studies, State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Key Laboratory of Marine Genetic Resources, Third Institute of
Oceanography, MNR, Xiamen, China</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Qian P. Li (qianli@scsio.ac.cn)</corresp></author-notes><pub-date><day>12</day><month>February</month><year>2021</year></pub-date>
      
      <volume>18</volume>
      <issue>3</issue>
      <fpage>1049</fpage><lpage>1065</lpage>
      <history>
        <date date-type="received"><day>24</day><month>June</month><year>2020</year></date>
           <date date-type="rev-request"><day>24</day><month>July</month><year>2020</year></date>
           <date date-type="rev-recd"><day>10</day><month>December</month><year>2020</year></date>
           <date date-type="accepted"><day>21</day><month>December</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 Zhengchao Wu et al.</copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021.html">This article is available from https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e150">Eutrophication-driven coastal hypoxia has been of great interest for
decades, though its mechanisms remain not fully understood. Here, we showed
elevated concentrations of particulate and dissolved polyunsaturated
aldehydes (PUAs) associated with the hypoxic waters in the bottom layer of a
salt-wedge estuary. Bacterial respiration within the hypoxic waters was
mainly contributed by particle-attached bacteria (PAB) (<inline-formula><mml:math id="M1" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), with free-living bacteria (0.2–0.8 <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) only accounting for
25 %–30 % of the total rate. The concentrations of particle-adsorbed PUAs
(<inline-formula><mml:math id="M4" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M6" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in the hypoxic waters were directly
quantified for the first time based on large-volume filtration and
subsequent on-site PUA derivation and extraction. PUA-amended incubation
experiments for PAB (<inline-formula><mml:math id="M7" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) associated with sinking or
suspended particles retrieved from the low-oxygen waters were also performed
to explore the impacts of PUAs on the growth and metabolism of PAB and
associated oxygen utilization. We found an increase in cell growth of PAB in
response to low-dose PUAs (1 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) but an enhanced
cell-specific bacterial respiration and production in response to high-dose
PUAs (100 <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Improved cell-specific metabolism of PAB in
response to high-dose PUAs was also accompanied by a shift of PAB community
structure with increased dominance of the genus <italic>Alteromonas</italic> within the Gammaproteobacteria.
We thus conclude that a high PUA concentration associated with aggregate
particles within the bottom layer may be crucial for some species within
<italic>Alteromonas</italic> to regulate PAB community structure. The change in bacteria community could
lead to an enhancement of oxygen utilization during the degradation of
particulate organic matter and thus likely contribute to the formation of
coastal hypoxia. These findings are potentially important for coastal
systems with large river inputs, intense phytoplankton blooms driven by
eutrophication, and strong hypoxia developed below the salt-wedge
front.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e275">Coastal hypoxia, defined as dissolved oxygen levels <inline-formula><mml:math id="M13" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 62.5 <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M15" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, has become a worldwide problem in recent decades (Diaz and
Rosenberg, 2008; Helm et al., 2011). It could affect diverse life processes
from genes to ecosystems, resulting in the spatial and temporal change in
marine food-web structures (Breitburg et al., 2018). Coastal deoxygenation
is also tightly coupled with other global issues, such as global warming and
ocean acidification (Doney et al., 2012). Formation and maintenance of
eutrophication-derived hypoxia in the coastal waters should reflect the
interaction between physical and biogeochemical processes (Kemp et<?pagebreak page1050?> al.,
2009). Generally, seasonal hypoxia occurs in the coastal ocean when strong
oxygen sinks are coupled with restricted resupply during periods of strong
density stratification. Termination of the event occurs with oxygen resupply
when stratification is eroded by vertical mixing (Fennel and Testa, 2019).</p>
      <p id="d1e305">Bacterial respiration accounts for the largest portion of aquatic oxygen
consumption and is thus pivotal for the development of hypoxia and oxygen minimum zones (Williams and del Giorgio, 2005; Diaz and Rosenberg, 2008).
Generally, free-living bacteria (FLB, 0.2–0.8 <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) dominate the
community respiration in many parts of the ocean (Robinson and Williams,
2005; Kirchman, 2008). Compared to the FLB, the role of particle-attached
bacteria (PAB, <inline-formula><mml:math id="M17" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) on community respiration is less
addressed, particularly in the coastal oceans. In some coastal waters, PAB
can be more important than the FLB with a higher metabolic activity that
might affect carbon cycle through organic matter remineralization (Garneau
et al., 2009; Lee et al., 2015). PAB was found more abundant than the FLB
with a higher diversity near the mouth of the Pearl River estuary (PRE) (Li
et al., 2018; Liu et al., 2020; Zhang et al., 2016). An increased
contribution of PAB to respiration relative to FLB can occur during the
development of coastal phytoplankton bloom (Huang et al., 2018). In the
Columbia River estuary, the particle-attached bacterial activity could be
10–100-fold higher than that of its free-living counterparts, leading to its
dominant role in organic detritus remineralization (Crump et al., 1998).
Therefore, it is crucial to assess the respiration process associated with
PAB and its controlling factors in these regions to fully understand oxygen
utilization in the hypoxic area with an intense supply of particulate
organic matter.</p>
      <p id="d1e331">There is an increasing area of seasonal hypoxia in the nearshore bottom
waters of the Pearl River estuary and the adjacent northern South China Sea
(NSCS) (Yin et al., 2004; Zhang and Li, 2010; Su et al., 2017). The hypoxia
is generally developed at the bottom of the salt wedge where downward mixing
of oxygen is restrained due to increased stratification and where there is
an accumulation of eutrophication-derived organic matter due to flow
convergence driven by local hydrodynamics (Lu et al., 2018). Besides
physical and biogeochemical conditions, aerobic respiration is believed to be the ultimate cause of hypoxia here (Su et al., 2017). Thus, microbial
respiration had been strongly related to the consumption of bulk dissolved
organic carbon in the PRE hypoxia (He et al., 2014).</p>
      <p id="d1e334">Phytoplankton-derived polyunsaturated aldehydes (PUAs) are known to affect
marine microorganisms over various trophic levels by acting as infochemicals
and/or by chemical defenses, which strengthen their potential importance in
natural environments (Ribalet et al., 2008; Ianora and Miralto, 2010;
Edwards et al., 2015; Franzè et al., 2018). PUAs are produced by
stressed diatoms during the oxidation of membrane polyunsaturated fatty acids (PUFAs) by lipoxygenase (Pohnert, 2000) and are released from the
surface of particles to the seawater by diffusion. A perennial bloom of
PUA-producing diatoms near the mouth of the PRE (Wu and Li, 2016) should
support the importance of PUAs relative to other phytoplankton-derived
organic compounds, such as karlotoxin by dinoflagellates, cyanotoxin by
cyanobacteria, and dimethylsulfoniopropionate mainly by prymnesiophytes.
Besides PUAs, there are other signaling molecules that may potentially
affect bacterial activities in the low-oxygen waters, such as
2-<inline-formula><mml:math id="M19" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>-pentyl-4-quinolinol (PQ) and acylated homoserine lactones (AHLs). PQ
could be less important here in terms of hypoxia formation as it is
generally produced as antibiosis by PAB such as <italic>Alteromonas</italic> sp. to inhibit respirations of
other PAB (Long et al., 2003). AHLs could also play a less important role
here since the AHL-mediated quorum sensing could be constrained by a large
pH fluctuation from 7.2 to 8.8 in the bottom waters of the PRE (Decho et
al., 2009).</p>
      <p id="d1e348">The level of PUAs in the water column is inhomogeneous, varying from
sub-nanomolar offshore to nanomolar near shore (Vidoudez et al., 2011; Wu and
Li, 2016; Bartual et al., 2018) and to micromolar associated with particle
hotspots (Edwards et al., 2015). The strong effect of PUAs on bacterial
growth, production, and respiration has been well demonstrated in laboratory
studies (Ribalet et al., 2008) and field studies (Balestra et al., 2011;
Edwards et al., 2015). A nanomolar level of PUAs recently reported in the
coastal waters outside the PRE was hypothesized to affect oxygen depletion
by promoting microbial utilization of organic matter in the bottom waters
(Wu and Li, 2016). Meanwhile, the actual role of PUAs on bacterial
metabolism within the bottom hypoxia remains largely unexplored.</p>
      <p id="d1e351">In this study, we investigate the particle-attached bacteria within the core of the hypoxic waters by exploring the linkage between PUAs and bacterial
oxygen utilization on the suspended organic particles. There are three
specific questions to address here. What are the relative roles of PAB and
FLB on bacterial respiration in the hypoxic waters? What are the actual
levels of PUAs in the hypoxic waters? What are the responses of PAB to PUAs
in the hypoxic waters? For the first question, size-fractionated bacterial
respiration rates were estimated for both FLB (0.2–0.8 <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) and PAB
(<inline-formula><mml:math id="M21" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) in the hypoxic waters. For the second question,
the concentrations of particulate and dissolved PUAs within the hypoxic
waters were measured in the field. Besides, the hotspot PUA concentration
associated with the suspended particles within the hypoxic waters was
directly quantified for the first time using large-volume filtration and
subsequent on-site derivation and extraction. For the third question, field
PUA-amended incubation experiments were conducted for PAB (<inline-formula><mml:math id="M23" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) retrieved from the low-oxygen waters. We focused on particles of
<inline-formula><mml:math id="M25" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m to explore the role of PUAs on PAB associated with
sinking aggregates and large suspended particles (it may not be directly
comparable to other size cutoffs in the literature). The doses of PUA
treatments were selected to represent the actual<?pagebreak page1051?> levels of PUA hotspots to assess the PAB responses (including bacterial abundance, respiration,
production, and community composition) to the exogenous PUAs in the hypoxic
waters. By synthesizing these experimental results with the change in
water-column biogeochemistry, we hope to explore the underlying mechanism
for particle-adsorbed PUAs influencing community structure and metabolism
of PAB in the low-oxygen waters, as well as to understand its contribution
to coastal deoxygenation of the NSCS shelf sea.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Table}?><label>Table 1</label><caption><p id="d1e411">Summary of treatments in the experiments of exogenous PUA
additions for the low-oxygen waters at station Y1 during June 2019. The PUA
solution includes heptadienal (C7_PUA), octadienal
(C8_PUA), and decadienal (C10_PUA) with the
mole ratios of <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mn mathvariant="normal">10</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">Treatment</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">1</oasis:entry>
         <oasis:entry colname="col2">Control (methanol)</oasis:entry>
         <oasis:entry colname="col3">methanol</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">2</oasis:entry>
         <oasis:entry colname="col2">Low-dose PUAs (methanol)</oasis:entry>
         <oasis:entry colname="col3">2 mM PUAs in methanol</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">3</oasis:entry>
         <oasis:entry colname="col2">High-dose PUAs (methanol)</oasis:entry>
         <oasis:entry colname="col3">200 mM PUAs in methanol</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Descriptions of field campaigns and sampling approaches</title>
      <p id="d1e508">Field survey cruises were conducted in the PRE and the adjacent NSCS during
17–28 June 2016 and 18 June–2 July 2019
(Fig. 1). Briefly, vertical profiles of temperature, salinity, dissolved
oxygen, and turbidity were acquired from a Sea-Bird 911 rosette sampling
system. The oxygen sensor data were corrected by field titration
measurements during the cruise. Water samples at various depths were
collected using 6 or 12 L (12 or 24 positions) Niskin bottles attached
to the Rosette sampler. Surface water samples were collected at
<inline-formula><mml:math id="M28" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 or 5 m depth, while bottom water samples were obtained at
depths <inline-formula><mml:math id="M29" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 4 m above the bottom. Chlorophyll-<inline-formula><mml:math id="M30" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl-<inline-formula><mml:math id="M31" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>) samples
were taken at all depths at all stations, and nutrients were also sampled, except at a few discrete stations. For the 2016 cruise, samples for particulate PUAs (pPUAs)
were collected at all depths close to station X1 (Fig. 1a). During the
summer of 2019, vertical profiles of pPUAs and dissolved
PUAs (dPUAs) were determined at Y1 in the hypoxic zone and Y2 outside the
hypoxic zone with field PUA-amended experiments conducted at Y1 (Fig. 1b). For station Y1, the middle layer was defined as 12 m with the bottom
layer as 25 m. At this station, samples at different depths were collected
for determining the size-fractionated respiration rates and the whole water
bacterial taxonomy.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e541">Sampling map of the Pearl River estuary and the adjacent northern
South China Sea during <bold>(a)</bold> 17–28 June 2016 and <bold>(b)</bold> 18 June–2 July 2019. Contour shows the bottom oxygen distribution
with white lines highlighting the levels of 93.5 <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M33" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (oxygen-deficient zone) and 62.5 <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (hypoxic zone);
dashed line in panel <bold>(a)</bold> is an estuary-to-shelf transect with blue dots for
three stations with bacterial metabolic rate measurements; diamonds in panel <bold>(b)</bold> are two stations with vertical pPUA and dPUA measurements, with Y1 being the station for PUA-amended experiments.</p></caption>
          <?xmltex \igopts{width=213.395669pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f01.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><?xmltex \opttitle{Determination of chlorophyll-$a$ and dissolved nutrients}?><title>Determination of chlorophyll-<inline-formula><mml:math id="M36" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and dissolved nutrients</title>
      <p id="d1e621">For Chl-<inline-formula><mml:math id="M37" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> analyses, 500 mL of water sample was gently filtered through a 0.7 <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m Whatman GF/F filter. The filter was then wrapped by a piece of
aluminum foil and stored at <inline-formula><mml:math id="M39" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C on board. Chl-<inline-formula><mml:math id="M41" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> was extracted at 4 <inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C in the dark for 24 h using 5 mL of 90 % acetone. After being centrifuged at 4000 rpm for 10 min, Chl-<inline-formula><mml:math id="M43" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> was measured using a standard
fluorometric method with a Turner Designs fluorometer (Parsons et al.,
1984). Water samples for nutrients were filtered through 0.45 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m
Nucleopore filters and stored at <inline-formula><mml:math id="M45" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Nutrient concentrations
including nitrate plus nitrite, phosphate, and silicate were measured using
a segmented-flow nutrient AutoAnalyzer (Seal AA3, Bran + Luebbe GmbH).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><?xmltex \opttitle{Sampling and measurements of particulate and dissolved PUAs in 1\,L
seawater}?><title>Sampling and measurements of particulate and dissolved PUAs in 1 L
seawater</title>
      <p id="d1e712">We used a similar protocol of Wu and Li (2016) for pPUA and dPUA
collection, pretreatment, and determination. Briefly, 2–4 L of water
sample went through a GF/C filtration with both the filter and the filtrate
collected separately. The filter was rinsed by the derivative solution<?pagebreak page1052?> with
the suspended particle samples collected in a glass vial. After adding
an internal standard, the samples in the vial were frozen and thawed three
times to mechanically break the cells for pPUAs. The filtrate from the GF/C
filtration was also added with an internal standard and transferred to a C18
solid-phase extraction cartridge. The elute from the cartridge with the
derivative solution was saved in a glass vial for dPUAs. Both pPUA and
dPUA samples were frozen and stored at <inline-formula><mml:math id="M47" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p>
      <p id="d1e731">In the laboratory, the pPUA sample was thawed with the organic phase
extracted. After the solvent was evaporated with the sample concentrated and
re-dissolved in hexane, pPUAs were determined using gas chromatography and
mass spectrometry (Agilent Technologies Inc., USA). Standards series were
prepared by adding certain amounts of three major PUAs to the derivative
solution and went through the same pretreatment and extraction steps as
samples. Derivatives of dPUAs were extracted and measured by similar methods to pPUAs, except that the calibration curves of dPUAs were constructed
separately. The units of pPUAs and dPUAs are nmol L<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (nmol PUA in
1 L seawater).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Particle collections by large-volume filtrations in hypoxia waters</title>
      <p id="d1e754">Large volumes (<inline-formula><mml:math id="M50" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 300 L) of the middle (12 m) and the bottom
(25 m) waters within the hypoxia zone were collected by Niskin bottles at
station Y1. For each layer, the water sample was quickly filtered through a
sterile fabric screen (25 <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filter) on a disk filter equipped with a
peristaltic pump to qualitatively obtain particles of <inline-formula><mml:math id="M52" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. Larger zooplankters were picked off immediately. The particle samples
were gently back-flushed three times off the fabric screen using
particle-free seawater (obtained using a 0.2 <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filtration of the same
local seawater) into a sterile 50 mL sampling tube.</p>
      <p id="d1e795">The volume of total particles from large-volume filtration was measured as
follows: the collected particle in the 50 mL tube was centrifuged for 1 min at a speed of 3000 revolutions per minute (rpm) with the
supernatant saved (Hmelo et al., 2011). The particle sample was resuspended
as slurry by gently shaking and was transferred into a sterile 5 mL graduated
centrifuge tube. The sample was centrifuged again by the same centrifuging
speed with the final volume of the total particles recorded. The unit for
the total particle volume is milliliter (mL).</p>
      <p id="d1e798">All the particles were transferred back to the sterile 50 mL centrifuge tube
(so as all the supernatants) with 0.2 <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filtered seawater, which was
used for subsequent measurements of particle-adsorbed PUAs as well as for
PUA-amended incubation experiments of particle-attached bacteria.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e812">Procedure of large-volume filtration and subsequent experiments. A
large volume of the low-oxygen water was filtered through a 25 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m
filter to obtain the particle-adsorbed PUAs and the particle-attached
bacteria (PAB). The carbon-source test of PUA for the inoculated PAB
includes the additions of PUA, alkanes (ALKs), and polycyclic aromatic
hydrocarbons (PAHs). PUA-amended experiments for PAB include control (CT),
low-dose (PL), and high-dose (PH) PUAs. Samples in the biological oxygen
demand (BOD) bottles at the end of the experiment were analyzed for
bacterial respiration (BR), abundances (BA), production (BP), and DNA.
Note that pPUAs and dPUAs are particulate and dissolved PUAs in the
seawater.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f02.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Measurements of particle-adsorbed PUAs</title>
      <p id="d1e840">After gently shaking, 3 mL of sample in the 50 mL sampling tube (see Sect. 2.4) was used for the analyses of particle-adsorbed PUA concentration (two
replicates) according to the procedure shown in Fig. 2 (modified from the
protocols of Edwards et al., 2015, and Wu and Li, 2016). The sample (3 mL) was
transferred to 50 mL centrifuge tubes for PUA derivatization on board. An
internal standard of benzaldehyde was added to obtain a final concentration
of 10 <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. The aldehydes in the samples were derivatized by the addition
of O-(2,3,4,5,6-pentafluorobenzyl) hydroxylamine hydrochloride solution in
deionized water (pH <inline-formula><mml:math id="M58" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 7.5). The reaction was performed at room temperature
for 15 min (shaking slightly for mixing every 5 min). Then 2 mL sulfuric<?pagebreak page1053?> acid
(0.1 %) solution was added to a final concentration of 0.01 % acid (pH of
2–3) to avoid new PUAs induced by enzymatic cascade reactions. The derivate
samples were subsequently sonicated for 3 min before the addition of 20 mL
hexane, and the upper organic phase of the extraction was transferred to a
clean tube and stored at <inline-formula><mml:math id="M59" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p>
      <p id="d1e874">Upon returning to the laboratory, the adsorbed PUAs on these particles
(undisrupted PUAs) were determined with the same analytical methods as those
for the disrupted pPUAs (freeze–thaw methods to include the portion of PUAs
eventually produced as cells die, Wu and Li, 2016) except for the freeze–thaw
step. A separate calibration curve was made for the undisrupted PUA
derivates. A standard series of heptadienal, octadienal, and decadienal (0,
0.1, 0.5, 1.0, 2.5, 5.0, 10.0, 25.0 nmol L<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) was prepared before each
analysis by diluting a relevant amount of the PUA stock solution (methanolic
solution) with deionized water. These standard solutions were processed
through all the same experimental steps as those mentioned above for
derivation, extraction, and measurement of the undisrupted PUA sample. The
unit for the undisrupted PUAs is nmol L<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The total amount of the
undisrupted PUAs in the 50 mL sampling tube was the product of the measured
concentration and the total volume of the sample.</p>
      <p id="d1e901">The hotspot PUA concentration associated with the aggregate particles is
defined as the PUA concentration in the volume of the water parcel
displaced by these particles. Therefore, the final concentration of
particle-adsorbed PUAs in the water column, defined as PUAs (<inline-formula><mml:math id="M63" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), should be equal to the moles of particle-adsorbed PUAs (nmol, the
undisrupted PUAs) divided by the volume of particles (mL).</p>
</sec>
<sec id="Ch1.S2.SS6">
  <label>2.6</label><title>Incubation of particle-attached bacteria with PUA treatments</title>
      <p id="d1e932">The impact of PUAs on microbial growth and metabolisms in the hypoxia zone
was assessed by field incubation of particle-attached bacteria on particles
of <inline-formula><mml:math id="M65" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m collected from large-volume filtration with
direct additions of low or high doses of PUAs (1 or 100 <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M68" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)
on 29 June 2019 (Fig. 2).</p>
      <p id="d1e970">A sample volume of <inline-formula><mml:math id="M69" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 32 mL in the centrifuge tube (Sect. 2.4) was transferred to a sterile Nalgene bottle before being diluted by
particle-free seawater to a final volume of 4 L. About 3.2 L of the sample
solution was transferred into four sterile 1 L Nalgene bottles (each with
800 mL). One 1 L bottle was used for determining the initial conditions:
after gentle shaking, the solution was transferred into six biological
oxygen demand (BOD) bottles with three for initial oxygen concentration
(fixed immediately by Winkler reagents) and the other three for initial
bacterial abundance, production, and community structure. The other three
1 L bottles were used for three different treatments (each with two
replicates in two 0.5 L bottles): the first one served as the control with
the addition of 200 <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L methanol, the second one with 200 <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L
low-dose PUA solution, and the third one with 200 <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L high-dose PUA
solution (Table 1). We should note that the methanol percentage (0.05 %
<inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>) here is higher than its natural level in seawater although no
substantial change in bacterial community was found.</p>
      <p id="d1e1016">The solution in each of the three treatments (0.5 L bottles) was transferred
to six parallel replicates by 60 mL BOD bottles. These BOD bottles were
incubated at in situ temperature in the dark for 12 h. At the end of each
incubation experiment, three of the six BOD bottles were used for
determining the final oxygen concentrations with the other three for the
final bacterial abundance, production, and community structure.</p>
      <p id="d1e1019">To test the possibility of PUAs as carbon sources for bacterial utilization,
a minimal medium was prepared with only sterile artificial seawater but not
any organic carbons (Dyksterhouse et al., 1995). A volume of 375 <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L
sample (from the above 4 L sample solution) was inoculated in the minimal
medium amended with heptadienal in a final concentration of about 200 <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M76" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. This PUA level was close to the hotspot PUAs of 240 <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M78" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> found in the suspended particles of a station near the PRE. It was
also comparable to the hotspot PUAs of 25.7 <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M80" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the
temperate west North Atlantic (Edwards et al., 2015). For comparisons, the
same amount of sample was also inoculated in the minimal medium (75 mL)
amended with an alkane mixture (ALK, <inline-formula><mml:math id="M81" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>-pentadecane and <inline-formula><mml:math id="M82" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>-heptadecane) at a
final concentration of 0.25 g L<inline-formula><mml:math id="M83" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> or with a mixture of polycyclic
aromatic hydrocarbons (PAHs, naphthalene and phenanthrene) at a final
concentration of 200 ppm. These experiments were performed in the dark at room
temperature for over 30 d. Significant turbidity changes in the cell
culture bottle over incubation time are observed if there is a carbon source for bacterial growth.</p>
</sec>
<sec id="Ch1.S2.SS7">
  <label>2.7</label><title>Measurements of bacteria-related parameters</title>
<sec id="Ch1.S2.SS7.SSS1">
  <label>2.7.1</label><title>Bacterial abundance</title>
      <?pagebreak page1054?><p id="d1e1132">At the end of the 12 h incubation period, a 2 mL sample from each BOD bottle
was preserved in 0.5 % glutaraldehyde. The fixation lasted for half of an
hour at room temperature before being frozen in liquid N<inline-formula><mml:math id="M84" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and stored in
a <inline-formula><mml:math id="M85" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>80 <inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C freezer. In the laboratory, the samples were performed
through a previously published procedure for detaching particle-attached
bacteria (Lunau et al., 2005), which had been proved effective for samples
with high particle concentrations. To break up particles and attached
bacteria, 0.2 mL pure methanol was added to the 2 mL sample and vortexed.
The sample was then incubated in an ultrasonic bath (35 kHz, 2 <inline-formula><mml:math id="M87" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 320W per
period) at 35 <inline-formula><mml:math id="M88" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 15 min. Subsequently, the tube sample was
filtered with a 50 <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filter to remove large detrital particles. The
filtrate samples for surface-associated bacteria cells were diluted by 5–10-fold using a TE buffer solution and stained with 0.01 % SYBR Green I in the
dark at room temperature for 40 min. With the addition of 1 <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m beads,
bacterial abundance (BA) of the samples was counted by a flow cytometer
(Beckman Coulter CytoFLEX S) with bacteria detected on a plot of green
fluorescence versus side scatter (Marie et al., 1997). The precision of the
method estimated by the coefficient of variation (CV %) was generally less
than 5 %.</p>
      <p id="d1e1193">For bulk-water bacteria abundance, 1.8 mL of seawater sample was collected
after a 20 <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m prefiltration. The sample was transferred to a 2 mL
centrifuge tube and fixed by adding 20 <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L of 20 % paraformaldehyde
before storage in a <inline-formula><mml:math id="M93" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>80 <inline-formula><mml:math id="M94" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C freezer. In the laboratory, 300 <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L of the sample after thawing was used for staining with SYBR Green and
analyzed using the same flow cytometry method as above (Marie, et al., 1997).</p>
</sec>
<sec id="Ch1.S2.SS7.SSS2">
  <label>2.7.2</label><title>Bacterial respiration</title>
      <p id="d1e1244">For BOD samples, bacterial respiration (BR) was calculated based on the
oxygen decline during the 12 h incubation and was converted to carbon units
with the respiratory quotient assumed equal to 1 (Hopkinson, 1985).
Dissolved oxygen was determined by a high-precision Winkler titration
apparatus (Metrohm-848, Switzerland) based on the classic method (Oudot et
al., 1988). We should mention that BR could be overestimated if
phytoplankton and microzooplankton were present in the particle aggregates
of <inline-formula><mml:math id="M96" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. However, this effect could be relatively small
because the raw seawater in the hypoxic zone had very low chlorophyll <inline-formula><mml:math id="M98" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and
because there was virtually not much microzooplankton in the sample
(confirmed by FlowCAM).</p>
      <p id="d1e1269">The method for the estimation of the bulk water bacterial respiration at
stations X1, X2, and X3 can be found in Xu et al. (2018). For the bulk water
at station Y1, the size-fractionated respiration rates, including
free-living bacteria of 0.2–0.8 <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m and a particle-associated community of
<inline-formula><mml:math id="M100" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (we assumed that they were mostly PAB given the low
phytoplankton chlorophyll <inline-formula><mml:math id="M102" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> of the sample and the absence of zooplankton
during the filtration), were estimated based on the method of
García-Martín et al. (2019). Four 100 mL polypropylene bottles were
filled with seawater. One bottle was immediately fixed by formaldehyde.
After 15 min, the sample in each bottle was incubated in the dark at the in situ temperature after the addition of the iodo-nitro-tetrazolium (INT) salt at a
final concentration of 0.8 mmol L<inline-formula><mml:math id="M103" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The incubation reaction lasted for
1.5 h before being stopped by formaldehyde. After 15 min, all the samples
were sequentially filtered through 0.8 and 0.2 <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m pore size
polycarbonate filters and stored frozen until further measurements by
spectrophotometry.</p>
</sec>
<sec id="Ch1.S2.SS7.SSS3">
  <label>2.7.3</label><title>Bacterial production</title>
      <p id="d1e1331">Bacterial production (BP) was determined using a modified protocol of the
<inline-formula><mml:math id="M105" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H-leucine incorporation method (Kirchman, 1993). Four 1.8 mL aliquots
of the sample were collected by pipet from each BOD incubation and added to
2 mL sterile microcentrifuge tubes, which were incubated with
<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H-leucine (in a final concentration of 4.65 <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol Leu L<inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
PerkinElmer, USA). One tube served as the control and was fixed by adding
100 % trichloroacetic acid (TCA) immediately (in a final concentration of
5 %). The other three were terminated with TCA at the end of the 2 h dark
incubation. Samples were filtered onto 0.2 <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m polycarbonate filters and
then rinsed twice with 5 % TCA and three times with 80 % ethanol (Huang
et al., 2018) before being stored at <inline-formula><mml:math id="M110" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>80 <inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. In the laboratory,
the filters were transferred to scintillation vials with 5 mL of Ultima Gold
scintillation cocktail. The incorporated <inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H was determined using a
Tri-Carb 2800TR liquid scintillation counter. Bacterial production was
calculated with the previous published leucine-to-carbon empirical
conversion factors of 0.37 kg of carbon per mole of leucine in the study area (Wang
et al., 2014). Bacterial carbon demand (BCD) was calculated as the sum of BP
and BR. Bacterial growth efficiency (BGE) was equated to BP/BCD.</p>
</sec>
<sec id="Ch1.S2.SS7.SSS4">
  <label>2.7.4</label><title>Bacterial community structure</title>
      <p id="d1e1414">At the end of incubation, the DNA sample was obtained by filtering 30 mL of
each BOD water sample via a 0.22 <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m Millipore filter, which was preserved in a cryovial with the DNA protector buffer and stored at <inline-formula><mml:math id="M114" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>80 <inline-formula><mml:math id="M115" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. DNA
was extracted using the DNeasy PowerWater Kit with genomic amplification by
polymerase chain reaction (PCR). The V3 and V4 fragments of bacterial 16S
rRNA were amplified at 94 <inline-formula><mml:math id="M116" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 2 min and followed by 27 cycles
of amplification (94 <inline-formula><mml:math id="M117" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 30 s, 55 <inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 30 s, and
72 <inline-formula><mml:math id="M119" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 60 s) before a final step of 72 <inline-formula><mml:math id="M120" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 10 min. Primers for amplification included 341F (CCTACGGGNGGCWGCAG) and 805R
(GACTACHVGGGTATCTAATCC). Reactions were performed in a 10 <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L mixture
containing 1 <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L TopTaq Buffer, 0.8 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L dNTPs, 10 <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m primers,
0.2 <inline-formula><mml:math id="M125" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L Taq DNA polymerase, and 1 <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L template DNA. Three parallel
amplification products for each sample were purified by an equal volume of
AMPure XP magnetic beads. Sample libraries were pooled in equimolar and
paired-end sequenced (<inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">250</mml:mn></mml:mrow></mml:math></inline-formula> bp) on an Illumina MiSeq platform.</p>
      <p id="d1e1548">High-quality sequencing data were obtained by filtering on the original
offline data. Briefly, the raw data were pre-processed using TrimGalore to
remove reads with qualities of less than 20 and FLASH2 to merge paired-end
reads. Besides, the data were also processed using USEARCH to remove reads
with a total base error rate of greater than 2 and short reads with a length
of less than 100 bp and using mothur to remove reads containing more than 6 bp of N bases. We further used UPARSE to remove the singleton sequence to
reduce the redundant calculation during the data processing. Sequences with
similarity greater than 97 % were clustered into the same operational
taxonomic units (OTUs). R software was used for community composition
analysis.</p>
      <?pagebreak page1055?><p id="d1e1551">DNA samples for the bulk bacteria (<inline-formula><mml:math id="M128" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) and PAB on
particles of <inline-formula><mml:math id="M130" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m at station Y1 were also collected for
bacterial community analysis using the same method described above. Methods
for the bulk water bacterial community analyses at stations X1, X2, and X3
during the 2016 cruise can be found in the published paper of Xu et al. (2018).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e1587">Vertical distributions of <bold>(a)</bold> temperature, <bold>(b)</bold> turbidity, <bold>(c)</bold> nitrate, <bold>(d)</bold> salinity, <bold>(e)</bold> dissolved oxygen, and <bold>(f)</bold> chlorophyll <inline-formula><mml:math id="M132" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> from the
estuary to the shelf of the NSCS during June 2016. Section locations are
shown in Fig. 1; the white line in panel <bold>(d)</bold> shows the area of oxygen-deficiency zone (<inline-formula><mml:math id="M133" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 93.5 <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M135" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f03.png"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S2.SS8">
  <label>2.8</label><title>Statistical analysis</title>
      <p id="d1e1661">All statistical analyses were performed using the statistical software SPSS
(version 13.0, SPSS Inc., Chicago, IL, USA). A Student's <inline-formula><mml:math id="M136" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test with a
two-tailed hypothesis was used when comparing PUA-amended treatments with the
control or comparing stations inside and outside the hypoxic zone, with the
null hypothesis being rejected if the probability (<inline-formula><mml:math id="M137" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>) is less than 0.05. We
consider <inline-formula><mml:math id="M138" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> of <inline-formula><mml:math id="M139" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.05 as significant and <inline-formula><mml:math id="M140" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> of <inline-formula><mml:math id="M141" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.01 as strongly significant. Ocean Data View with the extrapolation model DIVA gridding method was used to contour the spatial distributions of physical and
biogeochemical parameters.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Characteristics of hydrography, biogeochemistry, and bulk bacteria
community in the hypoxic zone</title>
      <p id="d1e1723">During our study periods, there was a large body of low-oxygen bottom water
with the strongest hypoxia (<inline-formula><mml:math id="M142" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 62.5 <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M144" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) on the
western shelf of the PRE (Fig. 1), which was relatively similar among
different summers of 2016 and 2019 (Fig. 1). For vertical distribution, a
strong salt-wedge structure was found over the inner shelf (Fig. 3a, d)
with fresh water on the shore side due to intense river discharge. Bottom
waters with oxygen deficiency (<inline-formula><mml:math id="M145" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 93.5 <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M147" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) occurred
below the lower boundary of the salt wedge and expanded <inline-formula><mml:math id="M148" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 60 km offshore (Fig. 3e). In contrast, a surface high-Chl-<inline-formula><mml:math id="M149" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> patch (6.3 <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g L<inline-formula><mml:math id="M151" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) showed up near the upper boundary of the front, where there was
enhanced water-column stability, low turbidity, and high nutrients (Fig. 3b, c). Therefore, there was a spatial mismatch between the subsurface
hypoxic zone (Fig. 3e) and the surface chlorophyll bloom (Fig. 3f)
during the estuary-to-shelf transect, as both the surface Chl-<inline-formula><mml:math id="M152" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and oxygen
right above the hypoxic zones at the bottom boundary of the salt wedge were
not themselves maxima.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e1824">Comparisons of oxygen, bulk bacterial respiration (BR) and
production (BP), and bulk bacterial abundances (BAs) of Alphaproteobacteria (<inline-formula><mml:math id="M153" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro), Gammaproteobacteria (<inline-formula><mml:math id="M154" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro),
Bacteroidetes (Bact), and other bacteria for the bottom waters between
stations inside (X1) and outside (X2 and X3) the hypoxic zone during the
2016 cruise. Bulk bacteria community includes FLB and PAB of <inline-formula><mml:math id="M155" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 20 <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. Locations of stations X1, X2, and X3 are shown in Fig. 1a. Error
bars are the standard deviations.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f04.png"/>

        </fig>

      <p id="d1e1862">There were much higher rates of respiration (BR) (<inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) and production (BP) (<inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">13.0</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) for the bulk
bacterial community (including FLB and PAB) in the bottom waters of X1
within the hypoxic core than those of X2 and X3 outside the hypoxic zone
during June 2016 (Fig. 4, modified from data of Xu et al., 2018). The
size-fractionated respiration rates were quantified at station Y1 during the
2019 cruise (Fig. S1) to distinguish the different roles of FLB and PAB on
bacterial respiration in the hypoxic waters. Our results suggested that
bacterial respiration within the hypoxic waters was largely contributed by
PAB (<inline-formula><mml:math id="M163" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), which was about 2.3–3-fold higher than that by FLB
(0.2–0.8 <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m).</p>
      <p id="d1e1962">The bulk bacterial composition of the bottom water of X1 during the 2016
cruise with 78 % of Alphaproteobacteria (<inline-formula><mml:math id="M166" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro), 15 % of Gammaproteobacteria (<inline-formula><mml:math id="M167" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro), and 6 % of Bacteroidetes was
significantly different from those of X2 and X3 (91 % <inline-formula><mml:math id="M168" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro, 5 %
<inline-formula><mml:math id="M169" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro, and 2 % Bacteroidetes), although their bacterial abundances
were about the same (Fig. 4). Compared to that of the 2016 cruise, there
was a different taxonomic composition of the bulk bacterial community in the
hypoxic waters of the 2019 cruise with on average 33 % of <inline-formula><mml:math id="M170" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro,
25 % of <inline-formula><mml:math id="M171" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro, and 14 % of Bacteroidetes. Furthermore, there was
a substantially different taxonomic composition for PAB (<inline-formula><mml:math id="M172" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M173" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) with on average 66 % of <inline-formula><mml:math id="M174" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro, 22 % of <inline-formula><mml:math id="M175" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro,
and 4 % of Bacteroidetes (Fig. S2a). In particular, there was an
increase in <inline-formula><mml:math id="M176" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro but a decrease in <inline-formula><mml:math id="M177" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro and
Bacteroidetes in the PAB (<inline-formula><mml:math id="M178" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) relative to the bulk
bacterial community. On the genus level, the PAB (<inline-formula><mml:math id="M180" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)
was largely dominated by the <italic>Alteromonas</italic> group in both the middle and bottom waters
(Fig. S2b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e2087">Vertical distributions of <bold>(a)</bold> temperature, <bold>(b)</bold> salinity, <bold>(c)</bold> dissolved oxygen (DO), <bold>(d)</bold> chlorophyll <inline-formula><mml:math id="M182" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl-<inline-formula><mml:math id="M183" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>), <bold>(e)</bold> particulate PUAs (pPUAs), and <bold>(f)</bold> dissolved PUAs (dPUAs) inside (Y1) and outside (Y2) the hypoxic zone
during June 2019. Locations of station Y1 and Y2 are shown in Fig. 1.
Error bars are the standard deviations.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>PUA concentrations in the hypoxic zone</title>
      <p id="d1e2137">Generally, there were significantly higher pPUAs of 0.18 nmol L<inline-formula><mml:math id="M184" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(<inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.20</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) and dPUAs of 0.12 nmol L<inline-formula><mml:math id="M188" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(<inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.61</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) in the hypoxic waters than in the nearby
bottom waters without hypoxia (0.02 and 0.01 nmol L<inline-formula><mml:math id="M192" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).
Vertical distributions of pPUAs and dPUAs in the bulk seawater are shown for two stations (Y1 and Y2) inside and outside the hypoxic zone (Fig. 1).
Nanomolar levels of pPUAs and dPUAs were found in the water column in both
stations (Fig. 5e, f). There were high pPUAs and dPUAs in the bottom
hypoxic waters of station Y1 (Fig. 5e, f) together with locally elevated
turbidity (Fig. 3b) when compared to the bottom waters outside, which is likely a result of particle resuspension. For station Y2 outside the
hypoxia, we found negligible pPUAs and dPUAs at depths below the mixed layer
(Fig. 5e, f), which could be due to PUA dilution by the intruded
subsurface seawater.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e2251">Concentrations of particle-adsorbed PUAs (in micromoles per liter
particle) in the middle (12 m) and the bottom (25 m) waters of station Y1
during June 2019. Three different PUA components are also shown, including heptadienal (C7_PUA), octadienal (C8_PUA), and
decadienal (C10_PUA). Error bars are the standard deviations.</p></caption>
          <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f06.png"/>

        </fig>

      <p id="d1e2260">Particle-adsorbed PUAs in the low-oxygen waters were quantified for the
first time with the direct particle volume estimated by
large-volume filtration (see the method section), which would reduce the
uncertainty associated with the particle volume calculated by empirical
equations derived for marine-snow particles (Edward et al., 2015). We found
high levels of particle-adsorbed PUAs (<inline-formula><mml:math id="M193" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M194" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M195" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in these waters (Fig. 6), which were orders of magnitude higher
than the bulk water pPUA or dPUA concentrations (<inline-formula><mml:math id="M196" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 0.3 nmol L<inline-formula><mml:math id="M197" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, Fig. 5e, f). Particle-adsorbed PUAs of the low-oxygen waters
mainly consisted of heptadienal (C7_PUA) and octadienal
(C8_PUA).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e2312">Responses of particle-attached bacterial parameters including <bold>(a)</bold> bacterial abundance (BA<inline-formula><mml:math id="M198" display="inline"><mml:msub><mml:mi/><mml:mtext>particle</mml:mtext></mml:msub></mml:math></inline-formula>), <bold>(b)</bold> bacterial respiration
(BR<inline-formula><mml:math id="M199" display="inline"><mml:msub><mml:mi/><mml:mtext>particle</mml:mtext></mml:msub></mml:math></inline-formula>), <bold>(c)</bold> cell-specific bacterial respiration
(sBR<inline-formula><mml:math id="M200" display="inline"><mml:msub><mml:mi/><mml:mtext>particle</mml:mtext></mml:msub></mml:math></inline-formula>), <bold>(d)</bold> bacterial growth efficiency (BGE<inline-formula><mml:math id="M201" display="inline"><mml:msub><mml:mi/><mml:mtext>particle</mml:mtext></mml:msub></mml:math></inline-formula>), <bold>(e)</bold> bacterial production (BP<inline-formula><mml:math id="M202" display="inline"><mml:msub><mml:mi/><mml:mtext>particle</mml:mtext></mml:msub></mml:math></inline-formula>), and <bold>(f)</bold> cell-specific bacterial
production (sBP<inline-formula><mml:math id="M203" display="inline"><mml:msub><mml:mi/><mml:mtext>particle</mml:mtext></mml:msub></mml:math></inline-formula>) to different doses of PUA additions at the
end of the experiments for the middle (12 m) and the bottom waters (25 m) at
station Y1. Error bars are standard deviations. The star represents a
significant difference (<inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>), with PL and PH the low- and high-dose
PUA treatments and C the control.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f07.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page1056?><sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Particle-attached bacterial growth and metabolism in the hypoxic zone</title>
      <p id="d1e2417">Incubation of the PAB acquired from the low-oxygen waters with direct
additions of different doses of exogenous PUAs over 12 h was carried out
to examine the change in bacterial growth and metabolism activities in
response to PUA enrichments. At the end of the incubation experiments, BA
was not different from the control for the PH treatment (Fig. 7a).
However, for the PL treatment, there were substantial increases in BA in
both the middle and the bottom waters compared to the initial conditions
(Fig. 7a). In particular, BA of <inline-formula><mml:math id="M205" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3.2 <inline-formula><mml:math id="M206" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04 <inline-formula><mml:math id="M207" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M208" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:math></inline-formula> cells L<inline-formula><mml:math id="M209" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the bottom water for the PL treatment
was significantly higher (<inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">12.26</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) than the control
of 2.5 <inline-formula><mml:math id="M213" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.07 <inline-formula><mml:math id="M214" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M215" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:math></inline-formula> cells L<inline-formula><mml:math id="M216" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>
      <p id="d1e2535">BR was significantly promoted by the low-dose PUAs with a 21.6 % increase
in the middle layer (<inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">11.91</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) and a 25.8 % increase
in the bottom layer (<inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">11.50</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) compared to the
controls. The stimulating effect of high-dose PUAs on BR was even stronger with a 47.0 % increase in the middle layer (<inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">30.56</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) and a 39.8 % increase in the bottom layer (<inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">9.40</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>)
(Fig. 7b). Meanwhile, the cell-specific BR was significantly improved for
both layers with a high dose of PUAs (<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">15.13</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4.77</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) but not with a low dose of PUAs (Fig. 7c) due to the increase in BA (Fig. 7a). BGE was generally very low (<inline-formula><mml:math id="M235" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 1.5 %) during all the experiments (Fig. 7d) due to substantially high
rates of BR (Fig. 7b) than BP (Fig. 7e). Also, there was no significant
difference in BGE between controls and PUA treatments for both layers
(Fig. 7d).</p>
      <?pagebreak page1057?><p id="d1e2764">For the bottom layer, BP was 12.6 <inline-formula><mml:math id="M236" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g C L<inline-formula><mml:math id="M238" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M239" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
for low-dose PUAs and 16.4 <inline-formula><mml:math id="M240" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.6 <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g C L<inline-formula><mml:math id="M242" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for
high-dose PUAs, which were both significantly (<inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.98</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10.41</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) higher than the control of 10.6 <inline-formula><mml:math id="M250" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.6 <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g C L<inline-formula><mml:math id="M252" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M253" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Meanwhile, BP in the middle layer was
significantly higher (<inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.52</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>) than the control for
high-dose PUAs (13.4 <inline-formula><mml:math id="M257" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.9 <inline-formula><mml:math id="M258" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g C L<inline-formula><mml:math id="M259" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M260" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) but not for
low-dose PUAs (12.6 <inline-formula><mml:math id="M261" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.9 <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g C L<inline-formula><mml:math id="M263" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M264" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) (Fig. 7e).
The cell-specific BP values (sBP, 7.9 <inline-formula><mml:math id="M265" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.5 and 6.9 <inline-formula><mml:math id="M266" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.2 fg C cell<inline-formula><mml:math id="M267" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> d<inline-formula><mml:math id="M268" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for high-dose PUAs were significantly (<inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.62</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">11.26</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) higher than the
control in both layers (Fig. 7f). Meanwhile, for low-dose PUAs, the sBP values in both layers were not significantly different from the controls.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Particle-attached bacterial community change during incubations</title>
      <p id="d1e3195">Generally, <inline-formula><mml:math id="M275" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro dominated (<inline-formula><mml:math id="M276" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 68 %) the bacterial
community at the class level for all experiments, followed by the second
largest bacterial group of <inline-formula><mml:math id="M277" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro. There was a significant increase
in <inline-formula><mml:math id="M278" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro by high-dose PUAs, with increments of 17.2 % (<inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">9.25</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) and 19.5 % (<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6.32</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) for the
middle and the bottom layers, respectively (Fig. 8a). However, there was
no substantial change in bacterial community composition by low-dose PUAs
for both layers (Fig. 8a).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e3301">Variation of particle-attached bacterial community compositions on
<bold>(a)</bold> the phylum level and <bold>(b)</bold> the genus level in response to different doses
of PUA additions at the end of the experiments for the middle and the
bottom waters at station Y1. Labels PL and PH are for the low- and high-dose
PUAs with CT the control.</p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f08.png"/>

        </fig>

      <?pagebreak page1059?><p id="d1e3316">On the genus level, there was also a large difference in the responses of
various bacterial subgroups to the exposure of PUAs (Fig. 8b). The main
contributing genus for the promotion effect by high-dose PUAs was the group
of <italic>Alteromonas</italic> spp., which showed a large increase in abundance of 73.9 % and
69.7 % in the middle and the bottom layers. For low-dose PUAs, the
promotion effect of PUAs on <italic>Alteromonas</italic> spp. was still found, although with a much lower
intensity (5.4 % in the middle and 19.4 % in the bottom). The promotion
effect of <inline-formula><mml:math id="M285" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro by high-dose PUAs was also contributed by
<italic>Halomonas</italic> spp. bacteria (percentage increase from 1.7 % to 7.4 %). Meanwhile, some
bacterial genus, such as <italic>Marinobacter</italic> and <italic>Methylophaga</italic> from <inline-formula><mml:math id="M286" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro, or <italic>Nautella</italic> and <italic>Sulfitobacter</italic> from <inline-formula><mml:math id="M287" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pro, showed decreased percentages by high-dose PUAs (Fig. 8b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e3365">Carbon-source test of PUAs with cell culture of particle-attached
bacteria inoculated from the low-oxygen waters of station Y1 including the
initial conditions (day 0) at the beginning of the experiments as well as
results after 30 d of incubations (day 30) for <bold>(a, b)</bold> the middle and <bold>(c, d)</bold> the bottom waters, respectively. Bottles from left to right are the
mediums (M) with the additions of polycyclic aromatic hydrocarbons (M <inline-formula><mml:math id="M288" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> PAH,
200 ppm), alkanes (M <inline-formula><mml:math id="M289" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> ALK, 0.25 g L<inline-formula><mml:math id="M290" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), and heptadienal
(M <inline-formula><mml:math id="M291" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C7_PUA, 0.2 mmol L<inline-formula><mml:math id="M292" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>); note that a change in
turbidity should indicate bacterial utilization of organic carbons. <bold>(e)</bold> The
optical density of bacterium <italic>Alteromonas hispanica</italic> MOLA151 growing in the minimal medium as well
as in the mediums with the additions of mannitol, pyruvate, and proline
(M <inline-formula><mml:math id="M293" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> MPP, 1 % each), heptadienal (M <inline-formula><mml:math id="M294" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C7_PUA, 145 <inline-formula><mml:math id="M295" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M), octadienal (M <inline-formula><mml:math id="M296" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C8_PUA, 130 <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M), and decadienal
(M <inline-formula><mml:math id="M298" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C10_PUA, 106 <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M). The method for <italic>A. hispanica</italic> growth and the
data in panel <bold>(e)</bold> are from Ribalet et al. (2008).</p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/1049/2021/bg-18-1049-2021-f09.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>Carbon-source preclusion experiments for PUAs</title>
      <p id="d1e3501">After 1 month of incubation, PAB inoculated from the low-oxygen waters
showed dramatic responses to both PAHs and ALKs (Fig. 9). In particular, the
mediums of PAH addition became turbid brown (bottles on the left), with the
medium of ALK addition turning into milky white (bottles in the middle)
(Fig. 9b, d). For comparison, they were both clear and transparent at
the beginning of the experiments (Fig. 9a, c). These results should
reflect the growth of bacteria in these bottles with the enrichments of
organic carbons. Meanwhile, the minimal medium with the addition of
heptadienal (C7_PUA) remained clear and transparent as it was
originally, which would indicate that PAB did not grow in the treatment of
C7_PUA.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
      <p id="d1e3513">Hypoxia occurs if the rate of oxygen consumption exceeds that of oxygen
replenishment by diffusion, mixing, and advection (Rabouille et al., 2008).
The spatial mismatch between the surface chlorophyll-<inline-formula><mml:math id="M300" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> maxima and the
subsurface hypoxia during our estuary-to-shelf transect should indicate that
the low-oxygen feature may not be directly connected to particle export by
the surface phytoplankton bloom. This outcome can be a combined result of
riverine nutrient input in the surface, water-column stability driven by
wind and buoyancy forcing, and flow convergence for an accumulation of
organic matter in the bottom (Lu et al., 2018).</p>
      <p id="d1e3523">Elevated concentrations of pPUAs and dPUAs near the bottom boundary of the
salt wedge should reflect a sediment source of PUAs, as the surface
phytoplankton above them was very low. PUA precursors such as PUFAs could be
accumulated as detritus in the surface sediment near the PRE mouth during
the spring blooms (Hu et al., 2006). Strong convergence at the bottom of the
salt wedge could be driven by shear vorticity and topography (Lu et al.,
2018). This would allow for the resuspension of small detrital particles.
Improved PUA production by oxidation of the resuspended PUFAs could occur
below the salt wedge as a result of enhanced lipoxygenase activity (in the
resuspended organic detritus) in response to the salinity increase by the
intruded bottom seawater (Galeron et al., 2018).</p>
      <p id="d1e3526">Direct measurement of the adsorbed PUA concentration associated with the
suspended particles of <inline-formula><mml:math id="M301" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m by the method of combined
large-volume filtration and on-site derivation and extraction yields a high
level of <inline-formula><mml:math id="M303" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M305" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> within the hypoxic zone. This
value is comparable to those previously reported in sinking particles
(<inline-formula><mml:math id="M306" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 50 <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) of the open ocean using the particle volume calculated
from diatom-derived marine-snow particles (Edward et al., 2015). Note that
there was also a higher level of 240 <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M309" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> found in another
station outside the PRE. A micromolar level of particle-adsorbed PUAs could
act as a hotspot for bacteria, likely exerting important impacts as signaling
molecules on microbial utilization of particulate organic matter and
subsequent oxygen consumption.</p>
      <p id="d1e3607">It should be mentioned that various pore sizes have been used for PAB
sampling in the literature. A 0.8 <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filtration was generally accepted
for separating PAB (<inline-formula><mml:math id="M311" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M312" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) and FLB (0.2–0.8 <inline-formula><mml:math id="M313" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) in
the ocean (Robinson and Williams, 2005; Kirchman, 2008; Huang et al., 2018;
Liu et al., 2020). Other studies defined a size of <inline-formula><mml:math id="M314" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m for
PAB and 0.2–3 <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m for FLB in some coastal waters (Crump et al. 1998;
Garneau et al., 2009; Zhang et al., 2016). Meanwhile, there were also many
studies using much larger sizes of filtration for PAB: a 5 <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filter in
the German Wadden Sea (Rink et al., 2003), a 10 <inline-formula><mml:math id="M318" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filter in the Santa
Barbara Channel (DeLong et al., 1993), a 30 <inline-formula><mml:math id="M319" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m filter in the Black Sea
(Fuchsman et al., 2011), and a 50 <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m mesh nylon net in the North
Atlantic waters (Edwards et al., 2015).</p>
      <p id="d1e3698">The hypoxic waters below the salt wedge have high turbidity probably due to
particle resuspension. High particle concentration here may explain the
previous finding of a higher abundance of PAB than FLB in the same area
(e.g., Li et al., 2018; Liu et al., 2020), similar to those found in the
Columbia River estuary (Crump et al., 1998). Also, anaerobic bacteria and
taxa preferring low-oxygen conditions were found more enriched in the
particle-attached communities than their free-living counterparts in the PRE
(Zhang et al., 2016). Our field measurements suggested that bacterial
respiration within the hypoxic waters was largely contributed by PAB
(<inline-formula><mml:math id="M321" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M322" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), with FLB (0.2–0.8 <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) playing a relatively
small role. Therefore, it is crucial to address the linkage between the
high-density PAB and the high level of particle-adsorbed PUAs associated
with the suspended particles in the low-oxygen waters.</p>
      <p id="d1e3724">We choose a larger pore size of 25 <inline-formula><mml:math id="M324" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m for collecting bacteria attached
to sinking aggregates and large suspended particles. Firstly, it has been
suggested that the microbial respiration rate can be positively related to
aggregate size (Ploug et al., 2002), and thus larger PAB likely contributes
more to oxygen consumption. Secondly, larger particle size can better
present the PAB taxonomy according to the previous finding of the saturation
of species accumulation (for the size-fractionated bacteria) when the size
is greater than 20 <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (Mestre et al., 2017). Thus, the taxonomic groups
of PAB caught on particles of <inline-formula><mml:math id="M326" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m should already cover
those of PAB on smaller particles of 0.8–25 <inline-formula><mml:math id="M328" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. A similar type of
filtration (30 <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) has been previously applied to study PAB in the
Black Sea suboxic zones (Fuchsman et al., 2011).</p>
      <?pagebreak page1060?><p id="d1e3775">Interestingly, our PUA-amended experiments for PAB (<inline-formula><mml:math id="M330" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M331" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)
retrieved from the low-oxygen waters revealed distinct responses of PAB to
different doses of PUA treatments with an increase in cell growth in
response to low-dose PUAs (1 <inline-formula><mml:math id="M332" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M333" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) but an elevated
cell-specific metabolic activity including bacterial respiration and
production in response to high-dose PUAs (100 <inline-formula><mml:math id="M334" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M335" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). An
increase in cell density of PAB by low-dose PUAs could likely reflect the
stimulating effect of PUAs on PAB growth. This finding was consistent with
the previous report of a PUAs level of 0–10 <inline-formula><mml:math id="M336" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M337" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> stimulating
respiration and cell growth of PAB in sinking particles of the open ocean
(Edwards et al., 2015). The negligible effect of low-dose PUAs on bacterial
community structure in our experiments was also in good agreement with those
found for PAB from sinking particles (Edwards et al., 2015). However, we do
not see the inhibitory effect of 100 <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M339" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> PUAs on PAB
respiration and production previously found in the open ocean (Edward et
al., 2015). Instead, the stimulating effect for high-dose PUAs on bacterial
respiration and production was even stronger with <inline-formula><mml:math id="M340" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 %
increments. The bioactivity of PUAs on bacterial strains could likely arise
from their specific arrangement of two double bonds and carbonyl chain
(Ribalet et al., 2008). Our findings support the important role of PUAs in
enhancing bacterial oxygen utilization in low-oxygen waters.</p>
      <p id="d1e3881">It should be mentioned that the effect of
background nanomolar PUAs on free-living bacteria remains controversial, which is not our focus in
this study. Previous studies suggested that 7.5 nmol L<inline-formula><mml:math id="M341" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> of PUAs would
have a different effect on the metabolic activities of distinct bacterial
groups in the NW Mediterranean Sea, although bulk bacterial abundance
remained unchanged (Balestra et al., 2011). In particular, the metabolic
activity of <inline-formula><mml:math id="M342" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro was least affected by nanomolar PUAs, although
those of Bacteroidetes and Rhodobacteraceae were markedly depressed
(Balestra et al., 2011). Meanwhile, the daily addition of 1 nmol L<inline-formula><mml:math id="M343" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> PUAs was found to not affect the bacterial abundance and community
composition during a mesocosm experiment in the Bothnian Sea (Paul et al.,
2012).</p>
      <p id="d1e3915">It is important to verify that the PUAs are not an organic carbon source but
a stimulator for PAB growth and metabolism. This was supported by the fact
that the inoculated PAB could not grow in the medium with 200 <inline-formula><mml:math id="M344" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M345" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> of PUAs although they grew pretty well in the mediums with a
similar amount of ALKs or PAHs. Our results support the previous findings that
the density of <italic>Alteromonas hispanica</italic> was not significantly affected by 100 <inline-formula><mml:math id="M346" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M347" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> of
PUAs in the minimal medium (without any organic carbons) during laboratory
experiments (Fig. 9e), where PUAs were considered to act as cofactors for
bacterial growth (Ribalet et al., 2008).</p>
      <p id="d1e3961">Improved cell-specific metabolism of PAB in response to high-dose PUAs was
accompanied by a significant shift of<?pagebreak page1061?> bacterial community structure. The
group of PAB with the greatest positive responses to exogenous PUAs was the genus <italic>Alteromonas</italic> within the <inline-formula><mml:math id="M348" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro, which is well known to have a
particle-attached lifestyle with rapid growth response to organic matter
(Ivars-Martinez et al., 2008). This result is contradicted by the previous
finding of a reduced percentage of the <inline-formula><mml:math id="M349" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro class by high-dose PUAs
in the PAB of open ocean sinking particles (Edward et al., 2015). Meanwhile,
previous studies suggested that different genus groups within the <inline-formula><mml:math id="M350" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro may respond distinctly to PUAs (Ribalet et al., 2008). Our result was
well consistent with the previous finding of the significant promotion
effect of 13 or 106 <inline-formula><mml:math id="M351" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M352" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> PUAs on <italic>Alteromonas</italic> <italic>hispanica</italic> from the pure culture
experiment (Ribalet et al., 2008). An increase in PUAs could thus confer on some of the <inline-formula><mml:math id="M353" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro (mainly special species within the genus
<italic>Alteromonas</italic>, such as <italic>A. hispanica</italic>, Fig. S2b) a competitive advantage over other bacteria,
leading to their population dominance on particles in the low-oxygen waters.
These results provide evidence for a previous hypothesis that PUAs could
shape the bacterioplankton community composition by driving the metabolic
activity of bacteria with neutral, positive, or negative responses (Balestra
et al., 2011).</p>
      <p id="d1e4029">The taxonomic composition of PAB (<inline-formula><mml:math id="M354" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M355" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) was substantially
different from that of the bulk bacteria community in the hypoxic zone (with
a large increase in <inline-formula><mml:math id="M356" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro associated with particles, Fig. S2a).
This result supports the previous report of <inline-formula><mml:math id="M357" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro being the most dominant clade attached to sinking particles in the ocean (DeLong et al.,
1993). A broad range of species associated with <inline-formula><mml:math id="M358" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro was known to
be important for quorum-sensing processes due to their high population
density (Doberva et al., 2015) associated with sinking or suspended
aggregates (Krupke et al., 2016). In particular, the genera of <inline-formula><mml:math id="M359" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro
such as <italic>Alteromonas</italic> and <italic>Pseudomonas</italic> are well-known quorum-sensing bacteria that can rely on
diverse signaling molecules to affect particle-associated bacterial
communities by coordinating gene expression within the bacterial populations
(Long et al., 2003; Fletcher et al., 2007).</p>
      <p id="d1e4082">It has been reported that the growths of some bacterial strains of the
<inline-formula><mml:math id="M360" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro such as <italic>Alteromonas</italic> spp. and <italic>Pseudomonas</italic> spp. could be stimulated and regulated by
oxylipins like PUAs (Ribalet et al., 2008; Pepi et al., 2017). Oxylipins
were found to promote biofilm formation of <italic>Pseudomonas</italic> spp. (Martinez et al., 2016) and
could serve as signaling molecules mediating cell-to-cell communication of
<italic>Pseudomonas</italic> spp. by an oxylipin-dependent quorum-sensing system (Martinez et al.,
2019). As PUAs are an important group of chemical cues belonging to
oxylipins (Franzè et al., 2018), it is thus reasonable to expect that
PUAs may also participate as potential signaling molecules for the quorum
sensing among a high-density <italic>Alteromonas</italic> or <italic>Pseudomonas</italic>. A high level of particle-adsorbed PUAs
occurring on organic particles in the low-oxygen water would likely allow
particle specialists such as <italic>Alteromonas</italic> to regulate bacterial community structure,
which could alter species richness and diversity of PAB as well as their
metabolic functions such as respiration and production when interacting with
particulate organic matter in the hypoxic zone. Various bacterial
assemblages may have different rates and efficiencies of particulate organic
matter degradation (Ebrahimi et al., 2019). Coordination amongst these PAB
could be critical in their ability to thrive on the recycling of particulate organic carbon (Krupke
et al., 2016) and thus likely contribute to the acceleration of oxygen
utilizations in the hypoxic zone. Nevertheless, the molecular mechanism of
the potential PUA-dependent quorum sensing of PAB may be an important topic
for future study.</p>
      <p id="d1e4114">Our findings may likely apply to other coastal systems where there are large
river inputs, intense phytoplankton blooms driven by eutrophication, and
strong hypoxia, such as the Chesapeake Bay, the Adriatic Sea, and the Baltic
Sea. For example, the Chesapeake Bay is largely influenced by river runoff with
strong eutrophication-driven hypoxia during the summer as a result of
increased water stratification (Fennel and Testa, 2019) and enhanced
microbial respiration fueled by organic carbons produced during spring
diatom blooms (Harding et al., 2015). Similar to the PRE, there was also a
high abundance of <inline-formula><mml:math id="M361" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro in the low-oxygen waters of the Chesapeake
Bay associated with the respiration of resuspended organic carbon (Crump et
al., 2007). Eutrophication causes intense phytoplankton blooms in the
coastal ocean. Sedimentation of the phytoplankton carbons will lead to their
accumulation in the surficial sediment (Cloern, 2001), including PUFA
compounds derived from the lipid production. Resuspension and oxidation of
these PUFA-rich organic particles during summer salt-wedge intrusion might
lead to high particle-adsorbed PUAs in the water column. These PUAs could
likely shift the particle-attached bacterial community to consume more
oxygen when degrading particulate organic matter and thus potentially
contribute to the formation of seasonal hypoxia. In this sense, the possible
role of PUAs on coastal hypoxia may be a byproduct of eutrophication driven
by anthropogenic nutrient loading. Further studies are required to quantify
the contributions from PUA-mediated oxygen loss by aerobic respiration to
total deoxygenation in the coastal ocean.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <?pagebreak page1062?><p id="d1e4133">In summary, we found elevated concentrations of pPUAs and dPUAs in the
hypoxic waters below the salt wedge. We also found high particle-adsorbed
PUAs associated with particles of <inline-formula><mml:math id="M362" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M363" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m in the hypoxic
waters based on the large-volume filtration method, which could generate a
hotspot PUA concentration of <inline-formula><mml:math id="M364" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M366" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the
water column. In the hypoxic waters, bacterial respiration was largely
controlled by PAB (<inline-formula><mml:math id="M367" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 0.8 <inline-formula><mml:math id="M368" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), with FLB (0.2–0.8 <inline-formula><mml:math id="M369" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) only
accounting for 25 %–30 % of the total respiration. Field PUA-amended
experiments were conducted for PAB associated with particles of <inline-formula><mml:math id="M370" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M371" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m retrieved from the low-oxygen waters. We found distinct responses
of PAB (<inline-formula><mml:math id="M372" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M373" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) to different doses of PUA treatments with an increase in cell growth in response to low-dose PUAs (1 <inline-formula><mml:math id="M374" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M375" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) but an elevated cell-specific metabolic activity including
bacterial respiration and production in response to high-dose PUAs (100 <inline-formula><mml:math id="M376" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol L<inline-formula><mml:math id="M377" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Improved cell-specific metabolism of PAB in response to
high-dose PUAs was also accompanied by a substantial shift of bacterial
community structure with increased dominance of the genus <italic>Alteromonas</italic> within the <inline-formula><mml:math id="M378" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>-Pro.</p>
      <p id="d1e4284">Based on these observations, we hypothesize that PUAs may potentially act as
signaling molecules for coordination among the high-density PAB below the
salt wedge, which would likely allow bacteria such as <italic>Alteromonas</italic> to thrive in degrading
particulate organic matter. Very possibly, this process by changing
community compositions and metabolic rates of PAB would lead to an increase
in microbial oxygen utilization that might eventually contribute to the
formation of coastal hypoxia.</p>
</sec>

      
      </body>
    <back><notes notes-type="codeavailability"><title>Code availability</title>

      <p id="d1e4294">No special software codes were generated or used during the study.</p>
  </notes><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e4300">Some of the data used in the present study are available in the
Supplement. Other data analyzed in this article are tabulated herein. Any additional data can be requested from the corresponding author.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e4303">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/bg-18-1049-2021-supplement" xlink:title="zip">https://doi.org/10.5194/bg-18-1049-2021-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e4312">QPL designed the project. ZW performed the experiments. QPL and ZW
wrote the paper with inputs from all co-authors. All authors have approved the final version of the paper.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e4318">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e4324">We are grateful to the captains and the staff of R/V <italic>Haike 68</italic> and R/V <italic>Tan Kah Kee</italic> for their help during the
cruises. We thank Dongxiao Wang (SCSIO) and Xin Liu (XMU) for
organizing the cruises, Yuchen Zhang (XMU) for field assistance, Changsheng Zhang (SCSIO) and Weimin Zhang (GIM) for analytical assistance, and Dennis Hansell (RSMAS) for critical comments.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e4335">This research has been supported by the National Natural Science Foundation of China (grant no. 41706181 and 41676108), the National Key Research and Development Program of China (grant no. 2016YFA0601203), the Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (grant no. GML2019ZD0305), the Guangdong Province Special Support Plan for Leading Talents (grant no. 2019TX05H216), and the Visiting Fellowship Program (MELRS1936) of the State Key Laboratory of Marine Environmental Science (Xiamen University).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e4341">This paper was edited by Tyler Cyronak and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>Impacts of biogenic polyunsaturated aldehydes on metabolism and community composition of particle-attached bacteria in coastal hypoxia</article-title-html>
<abstract-html><p>Eutrophication-driven coastal hypoxia has been of great interest for
decades, though its mechanisms remain not fully understood. Here, we showed
elevated concentrations of particulate and dissolved polyunsaturated
aldehydes (PUAs) associated with the hypoxic waters in the bottom layer of a
salt-wedge estuary. Bacterial respiration within the hypoxic waters was
mainly contributed by particle-attached bacteria (PAB) ( &gt; &thinsp;0.8&thinsp;µm), with free-living bacteria (0.2–0.8&thinsp;µm) only accounting for
25&thinsp;%–30&thinsp;% of the total rate. The concentrations of particle-adsorbed PUAs
( ∼ &thinsp;10&thinsp;µmol&thinsp;L<sup>−1</sup>) in the hypoxic waters were directly
quantified for the first time based on large-volume filtration and
subsequent on-site PUA derivation and extraction. PUA-amended incubation
experiments for PAB ( &gt; &thinsp;25&thinsp;µm) associated with sinking or
suspended particles retrieved from the low-oxygen waters were also performed
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associated oxygen utilization. We found an increase in cell growth of PAB in
response to low-dose PUAs (1&thinsp;µmol&thinsp;L<sup>−1</sup>) but an enhanced
cell-specific bacterial respiration and production in response to high-dose
PUAs (100&thinsp;µmol&thinsp;L<sup>−1</sup>). Improved cell-specific metabolism of PAB in
response to high-dose PUAs was also accompanied by a shift of PAB community
structure with increased dominance of the genus <i>Alteromonas</i> within the Gammaproteobacteria.
We thus conclude that a high PUA concentration associated with aggregate
particles within the bottom layer may be crucial for some species within
<i>Alteromonas</i> to regulate PAB community structure. The change in bacteria community could
lead to an enhancement of oxygen utilization during the degradation of
particulate organic matter and thus likely contribute to the formation of
coastal hypoxia. These findings are potentially important for coastal
systems with large river inputs, intense phytoplankton blooms driven by
eutrophication, and strong hypoxia developed below the salt-wedge
front.</p></abstract-html>
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