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  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-18-2301-2021</article-id><title-group><article-title>Spatial patterns of ectoenzymatic kinetics in relation to biogeochemical
properties in the Mediterranean Sea and<?xmltex \hack{\break}?> the concentration of the fluorogenic
substrate used</article-title><alt-title>Spatial patterns of ectoenzymatic kinetics</alt-title>
      </title-group><?xmltex \runningtitle{Spatial patterns of ectoenzymatic kinetics}?><?xmltex \runningauthor{F.~Van~Wambeke et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Van Wambeke</surname><given-names>France</given-names></name>
          <email>france.van-wambeke@mio.osupytheas.fr</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Pulido</surname><given-names>Elvira</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5436-2133</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Catala</surname><given-names>Philippe</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Dinasquet</surname><given-names>Julie</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3401-764X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff4">
          <name><surname>Djaoudi</surname><given-names>Kahina</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Engel</surname><given-names>Anja</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1042-1955</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Garel</surname><given-names>Marc</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Guasco</surname><given-names>Sophie</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Marie</surname><given-names>Barbara</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0005-6365</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Nunige</surname><given-names>Sandra</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Taillandier</surname><given-names>Vincent</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6922-0229</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6 aff7">
          <name><surname>Zäncker</surname><given-names>Birthe</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Tamburini</surname><given-names>Christian</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3752-7423</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Aix-Marseille Université, CNRS/INSU, Université de Toulon,
IRD, Mediterranean Institute of Oceanography (MIO) UM110, 13288, Marseille,
France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Marine Biology Research Division, Scripps Institution of Oceanography,
UCSD, La Jolla, CA, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Sorbonne Universités, UPMC University Paris 6, Laboratoire
d'Océanographie Microbienne (LOMIC),<?xmltex \hack{\break}?> Observatoire Océanologique,
66650, Banyuls/mer, France</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Molecular and Cellular Biology, The University of Arizona, Tucson, AZ, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>GEOMAR, Helmholtz Centre for Ocean Research, Kiel, Germany</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>CNRS, Sorbonne Universités, Laboratoire d'Océanographie de
Villefranche (LOV),<?xmltex \hack{\break}?> UMR7093, 06230 Villefranche-sur-Mer, France</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>The Marine Biological Association of the UK, Plymouth, United Kingdom</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">France Van Wambeke (france.van-wambeke@mio.osupytheas.fr)</corresp></author-notes><pub-date><day>9</day><month>April</month><year>2021</year></pub-date>
      
      <volume>18</volume>
      <issue>7</issue>
      <fpage>2301</fpage><lpage>2323</lpage>
      <history>
        <date date-type="received"><day>1</day><month>July</month><year>2020</year></date>
           <date date-type="rev-request"><day>17</day><month>August</month><year>2020</year></date>
           <date date-type="rev-recd"><day>15</day><month>February</month><year>2021</year></date>
           <date date-type="accepted"><day>24</day><month>February</month><year>2021</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 France Van Wambeke et al.</copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021.html">This article is available from https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e238">Ectoenzymatic activity, prokaryotic heterotrophic
abundances and production were determined in the Mediterranean Sea. Sampling
was carried out in the sub-surface, the deep chlorophyll maximum layer
(DCM), the core of the Levantine intermediate waters and in the deeper part
of the mesopelagic layers. Michaelis–Menten kinetics were assessed using a
large range of concentrations of fluorogenic substrates (0.025 to 50 <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M). As a consequence, <inline-formula><mml:math id="M2" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> (Michaelis–Menten half-saturation constant) and <inline-formula><mml:math id="M3" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> (maximum hydrolysis velocity) parameters were determined for both low- and
high-affinity enzymes for alkaline phosphatase, aminopeptidase (LAP) and
<inline-formula><mml:math id="M4" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase (<inline-formula><mml:math id="M5" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU). Based on the constant derived from the
high-LAP-affinity enzyme (0.025–1 <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M substrate concentration range),
in situ hydrolysis of N proteins contributed 48 % <inline-formula><mml:math id="M7" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 30 % to the
heterotrophic bacterial nitrogen demand within the epipelagic layers and
180 % <inline-formula><mml:math id="M8" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 154 % in the Levantine intermediate waters and the upper
part of the mesopelagic layers. The LAP hydrolysis rate was higher than
bacterial N demand only within the deeper layer and only when considering
the high-affinity enzyme. Based on a 10 % bacterial growth efficiency, the
cumulative hydrolysis rates of C proteins and C polysaccharides contributed
on average 2.5 % <inline-formula><mml:math id="M9" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.3  % to the heterotrophic bacterial carbon
demand in the epipelagic layers sampled (sub-surface and DCM). This study
clearly reveals potential biases in current and past interpretations of the
kinetic parameters for the three enzymes tested based on the fluorogenic-substrate concentration used. In particular, the LAP <inline-formula><mml:math id="M10" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU enzymatic
ratios and some of the depth-related trends differed between the use of
high and low concentrations of fluorogenic substrates.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e330">In aquatic environments, the organic matter compounds available for
bacterial utilization are dominated by polymeric material (Simon et al.,
2002; Aluwihare et al., 1997). In order to be assimilated, first they need
to be hydrolyzed into smaller molecules by ectoenzymes. This represents<?pagebreak page2302?> a
limiting step in organic matter degradation and in nutrient regeneration
(Hoppe, 1983; Chróst, 1991). Whether the ectoenzymatic activity should
be considered to be limiting the rate of organic matter remineralization is a
subject of debate since hydrolysis and consumption of the by-products of
hydrolysis are not always coupled (Smith et al., 1992). Bacterial
ectoenzymatic hydrolysis is usually determined using fluorogenic substrates
(Hoppe, 1983), which, when cleaved by the ectoenzyme, triggers the release of
a fluorescent by-product. The fluorescence increase is monitored over time,
thus allowing the determination of the hydrolysis rate. Kinetic experiments
are time-consuming, and most studies reporting ectoenzymatic activity
examined enzyme kinetic patterns using one or two samples. A single,
presumably saturating substrate concentration is then used to determine the
activity of all the samples. Baltar et al. (2009b) cite 17 published studies
on ectoenzymatic activity, of which 12 used a single substrate
concentration, ranging from 0.02–1000 <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M (with a median of 50 <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M). Only five studies used a range of substrate concentrations to
determine enzyme kinetics. In these five studies the lowest substrate
concentration used was 50 nM (typically the lower concentration in the set
is between 1 and 5 <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M), while the highest concentration was 1200 <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M (the range of the higher concentrations in the set is 5–1200 <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M,
with a median of 200 <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M). Another compilation of data from the
Mediterranean Sea (Zaccone and Caruso, 2019) showed that 6 out of 22 studies
used a single concentration (assumed to be saturating) with a median of 125 <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for leucine 7-amido–4-methyl coumarin and 50 <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for
methylumbelliferyl–phosphate. Likewise, the remaining studies assessed
enzyme kinetics with a highly variable range of substrate concentrations
(lowest concentrations of 0.025–200 <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M, with a median of 0.1 <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M;
highest concentrations of 1–4000 <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M, with a median of 20 <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M).
However, the combination of (i) non-specificity in the enzymes, (ii) the
heterogeneity of enzymatic systems within single species, (iii) the diversity
in species present, and (iv) the range and variability in concentrations of
surrounding substrates will result in multiphasic kinetics (Chróst,
1991; Arnosti, 2011; Sinsabaugh and Follstad Shah, 2012, and references
therein). Ectoenzymes are produced by a diversity of microorganisms. Their
activity depends on a patchy distribution of natural substrates and a
variety of natural (potentially unknown) molecules which can be hydrolyzed
by the same enzymes, with potentially different affinities. For instance,
cell-specific activities and types of activities were shown to be very
variable among 44 heterotrophic bacterial strains isolated from the
Californian coast and experimental phytoplankton blooms, both from particles
and in the suspended phase (Martinez et al., 1996). Arrieta and Herndl (2001) showed differences in <inline-formula><mml:math id="M24" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> (Michaelis–Menten half-saturation constant) and <inline-formula><mml:math id="M25" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> (maximum hydrolysis velocity) in an assessment of the diversity of
marine bacterial <inline-formula><mml:math id="M26" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidases taken from a natural community. In
the water column, different kinetic systems were also observed, which were
generally attributed to attached or free-living bacteria having different
affinities for substrates: <inline-formula><mml:math id="M27" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-strategist oligotrophic bacteria (with both
low <inline-formula><mml:math id="M28" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M29" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula>) or <inline-formula><mml:math id="M30" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>-strategist copiotrophic bacteria (with both high <inline-formula><mml:math id="M31" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M32" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula>; Koch, 2001). At depth, the combination of refractory dissolved organic matter (DOM) with recent and
freshly sinking particles would promote multiphasic kinetics for
ectoenzymatic activity. Biphasic kinetic systems have been described in
areas where increasing gradients of polymeric material are expected due to
the high concentration of particles, e.g., near the bottom and sediments for
aminopeptidase (Tholosan et al., 1999) and in a shallow bay for
phosphatases (Bogé et al., 2013). Most studies have shown that
cell-specific ectoenzymatic activities on aggregates are <inline-formula><mml:math id="M33" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10-fold higher than those of the surrounding assemblages (for example during a
decaying bloom; Martinez et al., 1996). Biphasic kinetics were also
attributed to free-living bacteria versus attached heterotrophic bacteria,
the latter adapted to high substrate concentrations (with both higher <inline-formula><mml:math id="M34" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M35" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula>; Unanue et al., 1999). Size fractionation is commonly carried out prior
to incubation with fluorogenic substrates in order to determine the size fraction in which the activity is dominant. However, size fractionation prior to
incubation biases ectoenzymatic activities due to filtration artifacts and
the disruption of trophic relationships between primary producers,
heterotrophic bacteria, protozoans and particulate matter. Despite such
biases, carbon budgets have shown that the prokaryotes attached to
aggregates are a likely source of by-products for free-living prokaryotes
(Smith et al., 1992). Measurements in bulk samples enable different
enzymatic kinetics to be determined without disturbing relationships between
free and attached prokaryotes and interactions between DOM and particulate organic matter (POM) during the incubations.</p>
      <p id="d1e517">In the Mediterranean Sea, elemental <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">N</mml:mi></mml:mrow><mml:mo>/</mml:mo><mml:mi mathvariant="normal">P</mml:mi></mml:mrow></mml:math></inline-formula> ratios of dissolved nutrients and
organic matter are the subject of particular interest to elucidate the
impact of P deficiency on DOC (dissolved organic carbon) accumulation in surface waters (Thingstad and
Rassoulzadegan, 1995; Krom et al., 2004) given that the export of organic
carbon in dissolved vs. particulate forms is linked to the P limitation in
surface layers (Guyennon et al., 2015). Since the epipelagic layers are P- or
N–P-limited during most of the stratification period, ectoenzymes such as
phosphatase and aminopeptidase providing P and N sources from organic matter
have been intensively studied as indicators of these limitations (Sala et
al., 2001; Van Wambeke et al., 2002). However, the potential bias introduced
by multiple kinetics when comparing different types of ectoenzymes and using
a variable range of substrates is still poorly understood.</p>
      <p id="d1e537">In this study, we investigated the Michaelis–Menten kinetics of three series
of enzymes targeting proteins, phosphomonoesters and carbohydrates
(leucine aminopeptidase, alkaline phosphatase and <inline-formula><mml:math id="M37" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M38" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>-glucosidase,
respectively) in the Mediterranean Sea. A wide range of substrate
concentrations were tested to evaluate potential multiphasic kinetics.<?pagebreak page2303?> Our
aim was to evaluate potential biases in the interpretation of past and
current enzymatic kinetics based on studies measuring rates with a reduced
range of substrate concentrations or with the use of too high substrate
concentrations. We also studied the links between ectoenzyme activities with
the spatial (vertical and horizontal) trends in the quality of the available
organic matter. In the Mediterranean Sea, the distribution of biogeochemical
properties below the productive zone is the result of large-scale dynamic
transport systems associated with three distinct thermohaline circulation
cells (Wust, 1961; Hopkins, 1978; The Mermex Group, 2011, and references
therein). These open cells convey fresh and cool waters of Atlantic origin
to the upper 150–200 m water layer extending into the eastern part of the
Levantine Sea. The return branch is composed of warm, saline waters – the
Levantine intermediate water (LIW) – which spread over the whole
Mediterranean Sea at depths of 200–500 m (Kress et al., 2003;
Malanotte-Rizzoli et al., 2003; Schroeder et al., 2020). In addition, two
closed cells, within each Mediterranean sub-basin, are driven by deep-water
convection and spread below the LIW (e.g., Lascaratos et al., 1999; Testor
et al., 2018).</p>
      <p id="d1e554">This study focuses on the open waters of the Mediterranean Sea, examining
four water layers: surface (generally P- or N-limited in stratification
period), the deep chlorophyll maximum layer (coinciding with nutricline
depths), the LIW and the deep waters. Alongside marine biogeochemical
fluxes, atmospheric fluxes were quantified simultaneously during the same
cruise. As a result of these exceptional simultaneous measurements, the data
used in this paper are also used in another article of this special
issue (Van Wambeke et al., 2020), where biogeochemical fluxes within the
mixed layers are compared to wet- and dry-N and wet- and dry-P atmospheric fluxes.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Materials and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Sampling strategy</title>
      <p id="d1e572">The PEACETIME cruise (<ext-link xlink:href="https://doi.org/10.17600/17000300" ext-link-type="DOI">10.17600/17000300</ext-link>, Guieu and Desboeufs, 2017) was conducted from May to
June 2017 along a transect extending from the western Mediterranean Basin
to the center of the Ionian Sea (Fig. 1). For details on the cruise strategy, see Guieu et
al. (2020a). Stations of short duration (<inline-formula><mml:math id="M39" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 8 h, 15 stations named SD1
to SD10; Fig. 1) and long duration (5 d, three stations named TYR, ION and
FAST) were sampled. At least three casts were conducted at each short station.
One focused on the first 250 m and the second one on the whole water column.
These two casts were sampled with a standard CTD (conductivity–temperature–depth) rosette equipped with 24
Niskin bottles (12 L) and a Sea-Bird SBE9 underwater unit equipped with
pressure, temperature (SBE3), conductivity (SBE4), chlorophyll fluorescence
(Chelsea Acquatracka) and oxygen (SBE43) sensors. The third cast (from
the surface to the bottom) was carried out using a trace-metal-clean (TMC) rosette
mounted on a Kevlar cable and equipped with Go-Flo bottles that were sampled
in a dedicated trace-metal-free container. The long stations situated in the
center of the Tyrrhenian Sea (TYR), in the center of the Ionian Sea (ION)
and in the western Algerian Basin (FAST) were selected using satellite
imagery, altimetry and Lagrangian diagnostics to target dust deposition
events (Guieu et al., 2020a). At these stations, repeated casts were
performed, alternating CTD and TMC rosettes.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e587">Sampling sites. Color codes on dots correspond to the plots in
Fig. 2.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f01.png"/>

        </fig>

      <p id="d1e596">The water sampled with the conventional CTD rosette was used for
measurements of heterotrophic bacterial production (BP; sensus stricto referring to
heterotrophic prokaryotic production), heterotrophic bacterial abundance
(BA; sensus stricto referring to heterotrophic prokaryotic abundances), ectoenzymatic
activities (EEAs), chlorophyll stocks, particulate organic carbon (POC),
nitrogen (PON), phosphorus (POP) and dissolved organic carbon (DOC).
Dissolved inorganic nitrogen (DIN) and phosphorus (DIP) as well as dissolved organic
nitrogen (DON) and phosphorus (DOP) were measured in samples collected using
the TMC rosette</p>
      <p id="d1e600">Details on sampling and analysis for the additional parameters presented in
this paper (hydrographic properties, total chlorophyll <inline-formula><mml:math id="M40" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Tchl <inline-formula><mml:math id="M41" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>) are
available in Taillandier et al. (2020), Guieu et al. (2020a) and
Marañón et al. (2021) in this issue.</p>
      <p id="d1e617">We focused on four layers of the water column: two in epipelagic waters (at 5 m
near the surface (SURF) and in the deep chlorophyll maximum layer (DCM),
localized by the in vivo fluorescence measured continuously during downcasts) and
two in deeper layers (in the LIW characterized by a sub-surface salinity
maximum and oxygen minimum during downcasts (LIW) and at 1000 m, the limit
between mesopelagic water and bathypelagic water (MDW), except<?pagebreak page2304?> at FAST and ION, where
the MDW samples were collected at 2500  and 3000 m, respectively (Table 1)).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e623">Characteristics of the stations. Lat: latitude; Long: longitude;
Bott D: bottom depth; <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="unit"><mml:mn mathvariant="normal">5</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>: temperature at 5 m depth; Ncline depth:
nitracline depth, calculated as the layer where NO<inline-formula><mml:math id="M43" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> reaches 50 nM; Pcline
depth: phosphacline depth, estimated as the layer where DIP reaches 50 nM;
ITchl <inline-formula><mml:math id="M44" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>: 0–250 m integrated total chlorophyll <inline-formula><mml:math id="M45" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>; LIW D: depth of the LIW
layer sampled; MDW D: depth of the MDW layer sampled.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="12">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Sampling date</oasis:entry>
         <oasis:entry colname="col3">Lat</oasis:entry>
         <oasis:entry colname="col4">Long</oasis:entry>
         <oasis:entry colname="col5">Bott D</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="unit"><mml:mn mathvariant="normal">5</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">DCM D</oasis:entry>
         <oasis:entry colname="col8">Ncline D</oasis:entry>
         <oasis:entry colname="col9">Pcline D</oasis:entry>
         <oasis:entry colname="col10">ITchl <inline-formula><mml:math id="M47" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col11">LIW D</oasis:entry>
         <oasis:entry colname="col12">MDW D</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(mm/dd/yyyy)</oasis:entry>
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E)</oasis:entry>
         <oasis:entry colname="col5">(m)</oasis:entry>
         <oasis:entry colname="col6">(<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)</oasis:entry>
         <oasis:entry colname="col7">(m)</oasis:entry>
         <oasis:entry colname="col8">(m)</oasis:entry>
         <oasis:entry colname="col9">(m)</oasis:entry>
         <oasis:entry colname="col10">(mg m<inline-formula><mml:math id="M51" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col11">(m)</oasis:entry>
         <oasis:entry colname="col12">(m)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">ST 10</oasis:entry>
         <oasis:entry colname="col2">06/08/2017</oasis:entry>
         <oasis:entry colname="col3">37.45</oasis:entry>
         <oasis:entry colname="col4">1.57</oasis:entry>
         <oasis:entry colname="col5">2770</oasis:entry>
         <oasis:entry colname="col6">21.6</oasis:entry>
         <oasis:entry colname="col7">89</oasis:entry>
         <oasis:entry colname="col8">30</oasis:entry>
         <oasis:entry colname="col9">69</oasis:entry>
         <oasis:entry colname="col10">28.9</oasis:entry>
         <oasis:entry colname="col11">500</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">FAST</oasis:entry>
         <oasis:entry colname="col2">06/03/2017</oasis:entry>
         <oasis:entry colname="col3">37.95</oasis:entry>
         <oasis:entry colname="col4">2.92</oasis:entry>
         <oasis:entry colname="col5">2775</oasis:entry>
         <oasis:entry colname="col6">21.0</oasis:entry>
         <oasis:entry colname="col7">87</oasis:entry>
         <oasis:entry colname="col8">50</oasis:entry>
         <oasis:entry colname="col9">59</oasis:entry>
         <oasis:entry colname="col10">27.3</oasis:entry>
         <oasis:entry colname="col11">350</oasis:entry>
         <oasis:entry colname="col12">2500</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST 1</oasis:entry>
         <oasis:entry colname="col2">05/12/2017</oasis:entry>
         <oasis:entry colname="col3">41.89</oasis:entry>
         <oasis:entry colname="col4">6.33</oasis:entry>
         <oasis:entry colname="col5">1580</oasis:entry>
         <oasis:entry colname="col6">15.7</oasis:entry>
         <oasis:entry colname="col7">49</oasis:entry>
         <oasis:entry colname="col8">48</oasis:entry>
         <oasis:entry colname="col9">76</oasis:entry>
         <oasis:entry colname="col10">35.0</oasis:entry>
         <oasis:entry colname="col11">500</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST 2</oasis:entry>
         <oasis:entry colname="col2">05/13/2017</oasis:entry>
         <oasis:entry colname="col3">40.51</oasis:entry>
         <oasis:entry colname="col4">6.73</oasis:entry>
         <oasis:entry colname="col5">2830</oasis:entry>
         <oasis:entry colname="col6">17.0</oasis:entry>
         <oasis:entry colname="col7">65</oasis:entry>
         <oasis:entry colname="col8">40</oasis:entry>
         <oasis:entry colname="col9">70</oasis:entry>
         <oasis:entry colname="col10">32.7</oasis:entry>
         <oasis:entry colname="col11">500</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST 3</oasis:entry>
         <oasis:entry colname="col2">05/14/2017</oasis:entry>
         <oasis:entry colname="col3">39.13</oasis:entry>
         <oasis:entry colname="col4">7.68</oasis:entry>
         <oasis:entry colname="col5">1404</oasis:entry>
         <oasis:entry colname="col6">14.3</oasis:entry>
         <oasis:entry colname="col7">83</oasis:entry>
         <oasis:entry colname="col8">47</oasis:entry>
         <oasis:entry colname="col9">100</oasis:entry>
         <oasis:entry colname="col10">23.2</oasis:entry>
         <oasis:entry colname="col11">450</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST 4</oasis:entry>
         <oasis:entry colname="col2">05/15/2017</oasis:entry>
         <oasis:entry colname="col3">37.98</oasis:entry>
         <oasis:entry colname="col4">7.98</oasis:entry>
         <oasis:entry colname="col5">2770</oasis:entry>
         <oasis:entry colname="col6">19.0</oasis:entry>
         <oasis:entry colname="col7">64</oasis:entry>
         <oasis:entry colname="col8">42</oasis:entry>
         <oasis:entry colname="col9">63</oasis:entry>
         <oasis:entry colname="col10">29.2</oasis:entry>
         <oasis:entry colname="col11">500</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST 5</oasis:entry>
         <oasis:entry colname="col2">05/16/2017</oasis:entry>
         <oasis:entry colname="col3">38.95</oasis:entry>
         <oasis:entry colname="col4">11.02</oasis:entry>
         <oasis:entry colname="col5">2366</oasis:entry>
         <oasis:entry colname="col6">19.5</oasis:entry>
         <oasis:entry colname="col7">77</oasis:entry>
         <oasis:entry colname="col8">42</oasis:entry>
         <oasis:entry colname="col9">78</oasis:entry>
         <oasis:entry colname="col10">30.5</oasis:entry>
         <oasis:entry colname="col11">200</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">TYR</oasis:entry>
         <oasis:entry colname="col2">05/17/2017</oasis:entry>
         <oasis:entry colname="col3">39.34</oasis:entry>
         <oasis:entry colname="col4">12.59</oasis:entry>
         <oasis:entry colname="col5">3395</oasis:entry>
         <oasis:entry colname="col6">19.6</oasis:entry>
         <oasis:entry colname="col7">73</oasis:entry>
         <oasis:entry colname="col8">82</oasis:entry>
         <oasis:entry colname="col9">95</oasis:entry>
         <oasis:entry colname="col10">31.3</oasis:entry>
         <oasis:entry colname="col11">200</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ST 6</oasis:entry>
         <oasis:entry colname="col2">05/22/2017</oasis:entry>
         <oasis:entry colname="col3">38.81</oasis:entry>
         <oasis:entry colname="col4">14.50</oasis:entry>
         <oasis:entry colname="col5">2275</oasis:entry>
         <oasis:entry colname="col6">20.0</oasis:entry>
         <oasis:entry colname="col7">75</oasis:entry>
         <oasis:entry colname="col8">43</oasis:entry>
         <oasis:entry colname="col9">113</oasis:entry>
         <oasis:entry colname="col10">18.7</oasis:entry>
         <oasis:entry colname="col11">400</oasis:entry>
         <oasis:entry colname="col12">1000</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ION</oasis:entry>
         <oasis:entry colname="col2">05/25/2017</oasis:entry>
         <oasis:entry colname="col3">35.49</oasis:entry>
         <oasis:entry colname="col4">19.78</oasis:entry>
         <oasis:entry colname="col5">3054</oasis:entry>
         <oasis:entry colname="col6">20.6</oasis:entry>
         <oasis:entry colname="col7">105</oasis:entry>
         <oasis:entry colname="col8">85</oasis:entry>
         <oasis:entry colname="col9">231</oasis:entry>
         <oasis:entry colname="col10">27.7</oasis:entry>
         <oasis:entry colname="col11">250</oasis:entry>
         <oasis:entry colname="col12">3000</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Biochemistry</title>
      <p id="d1e1258">Nitrate (NO<inline-formula><mml:math id="M52" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>), nitrite (NO<inline-formula><mml:math id="M53" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) and orthophosphate (DIP) concentrations were
determined using a segmented-flow auto-analyzer (AAIII HR Seal Analytical)
according to Aminot and Kérouel (2007). The quantification limits were 0.05 <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for NO<inline-formula><mml:math id="M55" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, 0.01 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for NO<inline-formula><mml:math id="M57" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and 0.02 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for DIP. DON
and DOP were determined after high-temperature (120 <inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)
persulfate wet oxidation (Raimbault et al., 1999) as follows: the water sample
was filtered through a 0.2 <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m polyethersulfone (PES) membrane and collected into 25 mL
glass flasks. Samples were immediately poisoned with 100 <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L
H<inline-formula><mml:math id="M62" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>SO<inline-formula><mml:math id="M63" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> 5 N and stored in the dark until analysis in the laboratory.
Samples (20 mL) were then transferred in Teflon vials for wet oxidation.
Nitrate and phosphate formed corresponding to the total N and P in the
dissolved pool (TDN and TDP) were determined as described for dissolved
inorganic nutrients. DON and DOP were obtained from the difference between
TDN and DIN and TDP and DIP, respectively. The limits of quantification were 0.5
and 0.02 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for DON and DOP, respectively.</p>
      <p id="d1e1374">Particulate organic nitrogen and phosphate (PON, POP) were determined using
the same wet-oxidation method (Raimbault et al., 1999). Samples (1.2 L) were
collected into polycarbonate bottles and filtered through pre-combusted (450 <inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, 4 h) glass fiber filters (Whatman 47 mm GF/F). Filters were
stored at <inline-formula><mml:math id="M66" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analysis. In the laboratory, samples were
placed in Teflon vials with 20 mL of ultrapure water (Milli-Q grade) and 2.5 mL of the wet-oxidation reagent for mineralization. The nitrate and
orthophosphate produced were analyzed as described previously. The limits of
quantification were 0.02 and 0.001 <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for PON and POP, respectively.</p>
      <p id="d1e1410">In epipelagic samples from nutrient-depleted layers, DIP and NO<inline-formula><mml:math id="M69" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> were
determined using the liquid waveguide capillary cell (LWCC) method (Zhang
and Chi, 2002) with enhanced sensitivity of the spectrophotometric
measurement by an increase in the length of the optical path of the
measurement cell to 2.5 m. For DIP, the detection limit was 0.8 nM, and the
response was linear up to about 150 nM; for NO<inline-formula><mml:math id="M70" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, the detection limit was 6 nM. Phosphacline and nitracline depths were determined as the layers where 50 nM concentration is reached.</p>
      <p id="d1e1431">Samples for dissolved organic carbon (DOC) were filtered through two
pre-combusted (24 h, 450 <inline-formula><mml:math id="M71" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) glass fiber filters (Whatman GF/F, 25 mm) using a custom-made glass and Teflon filtration syringe system. Samples (10 mL in duplicates) were collected into pre-combusted glass ampoules and
acidified to pH 2 with phosphoric acid (H<inline-formula><mml:math id="M72" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>PO<inline-formula><mml:math id="M73" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>). Ampoules were
immediately sealed and stored in the dark at room temperature. Samples were
analyzed by high-temperature catalytic oxidation (HTCO) on a Shimadzu
total organic carbon analyzer (TOC-L-CSH; Cauwet, 1999). Prior to injection, DOC samples were
purged with CO<inline-formula><mml:math id="M74" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-free air for 6 min to remove inorganic carbon. A total of 100 <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L of samples were injected in triplicate, and the analytical precision
was 2 %. Consensus reference materials
(<uri>https://hansell-lab.rsmas.miami.edu/consensus-reference-material/index.html</uri>, last access: 29 March 2021) were injected every
12 to 17 samples to ensure stable operating conditions. The nominal and
measured DOC concentrations of the two batches used in this study were 42–45
and 43–45 <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M, respectively, for batch 14-2014#07-14 and
42–44 and 42–49 <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M, respectively, for batch 17-2017#04-17. Particulate organic carbon (POC) was measured using a CHN
analyzer using the improved analysis proposed by Sharp (1974).</p>
      <p id="d1e1499">Samples (20 mL) for total hydrolyzable carbohydrates (TCHOs) <inline-formula><mml:math id="M78" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 1 kDa were collected into pre-combusted glass vials (8 h at 500 <inline-formula><mml:math id="M79" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)
and stored at <inline-formula><mml:math id="M80" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C until analysis. Samples were desalinated
using membrane dialysis (1 kDa molecular weight cut-off (MWCO), Spectra Por) at 1 <inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 5 h.
Samples were then hydrolyzed for 20 h at 100 <inline-formula><mml:math id="M83" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C with 0.8 M HCl
final concentration with subsequent neutralization using acid evaporation
(N<inline-formula><mml:math id="M84" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, for 5 h at 50 <inline-formula><mml:math id="M85" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). TCHOs were analyzed using high-performance anion exchange chromatography with pulsed amperometric detection
(HPAEC–PAD), which was applied on a Dionex ICS 3000 ion chromatography system
(Engel and Händel, 2011). Two replicates for each TCHO sample were
analyzed.</p>
      <p id="d1e1571">Total hydrolyzable amino acids (TAAs) were determined from a 5 mL water sample
collected into pre-combusted glass vials (8 h, 500 <inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) and stored
at <inline-formula><mml:math id="M87" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M88" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Samples were measured in duplicates. The samples were
hydrolyzed at 100 <inline-formula><mml:math id="M89" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for 20 h with 1 mL 30 % HCl
(Suprapur<sup>®</sup>, Merck) per 1 mL of sample and
neutralized by acid evaporation under vacuum at 60 <inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C in a
microwave. Samples were analyzed using high-performance liquid
chromatography (HPLC) on an Agilent 1260 HPLC system following a modified
version of established methods (Lindroth and Mopper, 1979; Dittmar et al.,
2009). Prior to the separation of 13 amino acids with a C<inline-formula><mml:math id="M91" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">18</mml:mn></mml:msup></mml:math></inline-formula> column
(Phenomenex Kinetex, 2.6 <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m, <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:mn mathvariant="normal">150</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">4.6</mml:mn></mml:mrow></mml:math></inline-formula> mm), in-line derivatization
with <inline-formula><mml:math id="M94" display="inline"><mml:mi>o</mml:mi></mml:math></inline-formula>-phthaldialdehyde and mercaptoethanol was carried out. A gradient with
solvent A containing 5 % acetonitrile (LiChrosolv, Merck, HPLC gradient
grade) in a sodium dihydrogen phosphate buffer (Suprapur<sup>®</sup>, Merck, pH 7.0) and acetonitrile as solvent B was used for analysis. A
gradient from 100 % solvent A to 78 % solvent A was produced in
50 min.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Bacterial production</title>
      <p id="d1e1668">BP was determined onboard using the <inline-formula><mml:math id="M95" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H–leucine (<inline-formula><mml:math id="M96" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H–leu)
incorporation technique (Kirchman, 1993) and the microcentrifuge method
(Smith and Azam, 1992) for epipelagic water samples. The filtration
technique was used for deep-water samples as the centrifuge technique
(limited to incubation volumes of 1.5 mL) is not sensitive to<?pagebreak page2305?> deep-water
communities. For SURF and DCM layers, triplicate 1.5 mL samples and a
control killed with trichloracetic acid (TCA; 5 % final concentration)
were incubated with a mixture of [4,5-<inline-formula><mml:math id="M97" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H]-leucine (Amersham, specific
activity 112 Ci mmol<inline-formula><mml:math id="M98" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and nonradioactive leucine at final
concentrations of 7 and 13 nM, respectively. Samples were incubated in the
dark at the respective in situ temperatures for 1–4 h. On nine occasions during the
cruise transect, we checked that the incorporation of leucine was linear
with time. Incubations were ended by the addition of TCA to a final
concentration of 5 %, followed by three runs of centrifugation at 16 000 g
for 10 min. Bovine serum albumin (BSA; Sigma, 100 mg L<inline-formula><mml:math id="M99" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> final
concentration) was added before the first centrifugation. After discarding
the supernatant, 1.5 mL of 5 % TCA was added before the second
centrifugation, and after discarding the supernatant, 1.5 mL of 80 %
ethanol was added. After the third centrifugation, the ethanol supernatant
was then discarded, and 1.5 mL of liquid scintillation cocktail (Packard
Ultima Gold MV) was added. For the LIW and MDW layers, 40 mL samples were
incubated in the dark for up to 12 h at in situ temperature (triplicate live
samples and one control fixed with 2 % formalin) with 10 nM
[4,5-<inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>H]-leucine. After filtration of the sample through 0.2 <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m
polycarbonate filters, 5 % final concentration TCA was added for 10 min; subsequently the filter was rinsed with 10 mL 5 % TCA and a final
rinse with 80 % ethanol.</p>
      <p id="d1e1740">For both types of samples (centrifuge tubes and filters) the incorporated
radioactivity was counted using a Packard LS 1600 liquid scintillation
counter on board the ship. A factor of 1.5 kg C mol leucine<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> was used
to convert leucine incorporation to carbon, assuming no isotopic dilution
(Kirchman, 1993), as checked four times using concentration kinetics. Standard
deviations from triplicate measurements averaged 8 % and 25 % for BP
values, estimated with the centrifugation (surface layers) or the filtration
technique (deep layers), respectively.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Ectoenzymatic activities</title>
      <p id="d1e1763">EEAs were measured fluorometrically using the following fluorogenic model
substrates: L-leucine-7-amido-4-methyl-coumarin (MCA-leu), 4-methylumbelliferyl–phosphate (MUF–P) and 4-methylumbelliferyl–<inline-formula><mml:math id="M103" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>D-glucopyranoside (MUF–<inline-formula><mml:math id="M104" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>glu) to track aminopeptidase (LAP) activity, alkaline phosphatase (AP) activity and <inline-formula><mml:math id="M105" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase
(<inline-formula><mml:math id="M106" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU) activity, respectively (Hoppe, 1983). Stock solutions (5 mM) were
prepared in methyl cellosolve and stored at <inline-formula><mml:math id="M107" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20 <inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. The numbers of
MCA and MUF products released by LAP, AP and <inline-formula><mml:math id="M109" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activities after
addition of substrate concentrations ranging from 0.025 to 50 <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M
were followed by measuring the increase in fluorescence (excitation and emission wavelengths <inline-formula><mml:math id="M111" display="inline"><mml:mn mathvariant="normal">380</mml:mn></mml:math></inline-formula> and <inline-formula><mml:math id="M112" display="inline"><mml:mn mathvariant="normal">440</mml:mn></mml:math></inline-formula> nm for MCA and 365 and 450 nm for MUF, wavelength width 5 nm)
in a Varioskan LUX microplate reader. The instrument was calibrated with
standards of MCA and MUF solutions diluted in filtered (<inline-formula><mml:math id="M113" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) boiled seawater. For measurements, 2 mL of unfiltered seawater samples
was supplemented with 100 <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>L of a fluorogenic-substrate solution in
a black 24-well polystyrene plate in duplicate. Incubations were carried out
in the dark in thermostatically controlled incubators at in situ temperatures.
Incubations lasted up to 24 h, with fluorescence measurements every 1 to 3 h, depending on the expected activities. The enzyme hydrolysis rate (<inline-formula><mml:math id="M116" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula>) was
calculated from the linear part of the fluorescence–time
relationship. Boiled-water blanks were run to check for abiotic activity.
The parameters <inline-formula><mml:math id="M117" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> (maximum hydrolysis velocity) and <inline-formula><mml:math id="M118" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> (Michaelis–Menten
half-saturation constant, which reflects enzyme affinity for the substrate)
were estimated by fitting the Michaelis–Menten function (<inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mi>V</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Vm</mml:mi><mml:mo>×</mml:mo><mml:mi>S</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Km</mml:mi><mml:mo>+</mml:mo><mml:mi>S</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>) to the hydrolysis rate (<inline-formula><mml:math id="M120" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula>) as a function of the fluorogenic-substrate concentration (<inline-formula><mml:math id="M121" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>) using nonlinear regression (PRISM4, Graph Pad
software, San Diego, USA). <inline-formula><mml:math id="M122" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M123" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> were determined using three series of
substrate concentrations: <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (global<?pagebreak page2306?> model) were calculated using a range of 11 concentrations (0.025, 0.05, 0.1,
0.25, 0.5, 1, 2.5, 5, 10, 25 and 50 <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) in duplicate, <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (model 1) were calculated using a restricted substrate
concentration set (0.025, 0.05, 0.1, 0.25, 0.5 and 1 <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) in duplicate,
and <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (model 50) were calculated using the
concentration set restricted to the high values of substrate (2.5, 5, 10,
25 and 50 <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M). The turnover time was estimated as the ratio <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mi mathvariant="normal">Km</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Vm</mml:mi></mml:mrow></mml:math></inline-formula> (Wright
and Hobbie, 1966). We used the term “ectoenzyme” for all types of enzymes
found outside the cell, including enzymes attached to external membranes and within the periplasmic space as well as free-dissolved enzymes, to broadly
encompass all enzymes located outside of intact cells regardless of the
process by which such enzymes interact with the substrate.</p>
      <p id="d1e2048">We used an approach similar to Hoppe et al. (1993) to compute in situ hydrolysis
rates for LAP and <inline-formula><mml:math id="M134" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU using total carbohydrate (TCHO) and total
amino acid (TAA) concentrations in water samples as representative of
dissolved carbohydrates and proteins, respectively. The calculation for AP
is presented in a companion paper from this issue (Pulido-Villena et al., 2021). These rates were calculated based on both <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
on <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. In situ hydrolysis rates expressed in nmol substrate L<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> were converted into carbon and nitrogen units using
C <inline-formula><mml:math id="M141" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> TCHO, C <inline-formula><mml:math id="M142" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> TAA and N <inline-formula><mml:math id="M143" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> TAA molar ratios.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Statistics</title>
      <p id="d1e2157">To assess biphasic ectoenzymatic activities, all kinetics where the
coefficient of variation (standard error<inline-formula><mml:math id="M144" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>mean ratio) of <inline-formula><mml:math id="M145" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> or <inline-formula><mml:math id="M146" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> was greater
than 100 % were rejected. For the remaining data we used the <inline-formula><mml:math id="M147" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> test of
Fisher–Snedecor as developed in Tholosan et al. (1999) to ascertain whether
two additional parameters (<inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, km<inline-formula><mml:math id="M149" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> and <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mrow><mml:mn mathvariant="normal">50</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> instead
of <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) improved the model significantly based on
the following series of equations:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M154" display="block"><mml:mrow><mml:mi mathvariant="normal">Cost</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Vm</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Km</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Σ</mml:mi><mml:msup><mml:mfenced open="[" close="]"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mi mathvariant="normal">data</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mi mathvariant="normal">fit</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:mi>w</mml:mi></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mi mathvariant="normal">data</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the experimental hydrolysis rate, <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mi mathvariant="normal">fit</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the corresponding
value of the fitted function, and <inline-formula><mml:math id="M157" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is a weighting factor set to 1, as in Tholosan
et al. (1999). The cost function was determined for the global model fitted
with the entire set of concentrations (cost<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:math></inline-formula>), model 1 (cost<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>) and model 50 (cost<inline-formula><mml:math id="M160" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:math></inline-formula>) as

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M161" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E2"><mml:mtd><mml:mtext>2</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\hbox\bgroup\fontsize{9.5}{9.5}\selectfont$\displaystyle}?><mml:mi mathvariant="normal">Var</mml:mi><mml:mo>(</mml:mo><mml:mtext>additional parameters</mml:mtext><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi mathvariant="normal">cost</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">cost</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">cost</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><?xmltex \hack{$\egroup}?></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd><mml:mtext>3</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">Var</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">biphasic</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="normal">cost</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">cost</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi>n</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M162" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is the number of concentration data in the entire data set. These two
variances were finally compared using the <inline-formula><mml:math id="M163" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> test:
            <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M164" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>n</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mtext>var</mml:mtext><mml:mo>(</mml:mo><mml:mtext>additional parameters</mml:mtext><mml:mo>)</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mtext>var</mml:mtext><mml:mo>(</mml:mo><mml:mtext>biphasic</mml:mtext><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2521">When the <inline-formula><mml:math id="M165" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> test showed that the variances were significantly different at a
probability of 0.1, we assumed that the biphasic mode was meaningful enough
to explain the kinetics of the entire data set.</p>
      <p id="d1e2531">Trends with depth were estimated using a depth variation factor (DVF)
estimated as the mean of pooled SURF and DCM data divided by the mean of
pooled LIW and MDW data. This decrease (or increase) was considered to be
significant after a <inline-formula><mml:math id="M166" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test comparing both series of data. The type of <inline-formula><mml:math id="M167" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test
used depended on the result of a preliminary <inline-formula><mml:math id="M168" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> test checking for variance.
Coefficient of variation (CV) was calculated as standard deviation <inline-formula><mml:math id="M169" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> mean <inline-formula><mml:math id="M170" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 100. Correlations among variables were examined after log transformation of
the data. All mean ratios cited in the text were computed from means of
ratios and not from the ratio of means.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Physical properties</title>
      <p id="d1e2585">The physical properties at the sampled stations (Fig. 2) show pronounced
longitudinal variation in agreement with the thermohaline circulation
features of the Mediterranean Sea (see Introduction). The deep waters,
formed by two separate internal-convection cells, have distinct properties
in the eastern basin (ION station, temperature of 13.43 <inline-formula><mml:math id="M171" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, salinity of
38.73) and the western basin (the remaining stations, temperature of 12.91 <inline-formula><mml:math id="M172" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, salinity of 38.48). The deep samples of MDW were collected
within or in the upper limits of deep waters (Fig. 2). The intermediate-layer samples of LIW were collected in the vicinity of the salinity maxima
(Fig. 2), which are used to identify the LIW core (e.g., Wust, 1961). Salinity
maxima in the LIW core are particularly pronounced in the west due to the
presence of fresher and lighter waters of Atlantic origin above; this
feature is progressively relaxed eastward. LIW properties decrease from ION,
the closest station from their source, to the westernmost stations of the
Algerian Basin (ST10, FAST), concurrent with their westward spread and
progressive dilution. During the springtime expedition PEACETIME, the
productive layer was stratified with the development of a seasonal
thermocline. This interface separated the warm surface waters from the cool
waters of Atlantic origin in which the DCM developed. As a consequence, the
two sample types collected in the productive layer (SURF and DCM; Fig. 2)
have similar salinity but different temperature. For the sake of clarity,
the stations are presented according to their longitudinal positions, from
west to east in the following order: ST10, FAST, ST1, ST2, ST3, ST4, ST5,
TYR, ST6 and ION.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e2608"><inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>/</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> diagram for the sampled stations. Main water masses are as follows. MAW:
modified Atlantic water; LIW: Levantine intermediate water; WMDW: western
Mediterranean deep water; EMDW: eastern Mediterranean deep water.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f02.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Biogeochemical properties</title>
      <?pagebreak page2307?><p id="d1e2636">Nitrate and phosphate were depleted in the surface layers, with
concentrations below the detection limits of classical methods (0.01 <inline-formula><mml:math id="M174" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M; Table S1). However, using the LWCC technique, which allows the measurement of nanomolar variations in nutrients, DIP could be detected (Table S1) and
ranged between 4 and 17 nM at 5 m depth (Table S1). Phosphaclines were
deeper than nitraclines and deeper in the eastern basin, particularly at ST
6 and ION. Chlorophyll standing stocks ranged from 18.7 to 35 mg Tchl <inline-formula><mml:math id="M175" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M176" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at ST 6 and ST1, respectively (integrations down to 250 m; Table 1). The depth of the DCM ranged from 49 to 83 m in the western basin,
exhibiting the deepest value in the Ionian Sea (105 m depth at ION), while no
obvious trend has been observed in the Tyrrhenian Sea.</p>
      <p id="d1e2666">DOC ranged from 39 to 75 <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M (Table S1). The highest DOC values were
generally observed in the surface layers and decreased by approximately 10 <inline-formula><mml:math id="M178" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M in each consecutive layer sampled. The DOC depth variation factor
ranged from <inline-formula><mml:math id="M179" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.2 to <inline-formula><mml:math id="M180" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.6. DON ranged from 2.5 to 10.4 <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M. The DON
depth variation factor (DVF) was close to that of DOC (<inline-formula><mml:math id="M182" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>1.2 to <inline-formula><mml:math id="M183" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.8). DOP
ranged from below our detection limit to 0.09 <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M. The mean values for
the DOC <inline-formula><mml:math id="M185" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> DON and DOC <inline-formula><mml:math id="M186" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> DOP molar ratios from all water layers were 14 <inline-formula><mml:math id="M187" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2
and 2112 <inline-formula><mml:math id="M188" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1644, respectively, with no significant change in these
ratios between epipelagic layers (SURF and DCM) and deeper layers (LIW and
MDW) due to the variability between stations. Deep DOP was not sampled at three stations. The DOP estimate is subject to large errors at depth (DIP is on
average 10 times higher than DOP).</p>
      <?pagebreak page2308?><p id="d1e2759"><?xmltex \hack{\newpage}?>The mean values of TAAs were similar in the SURF and DCM layers, around 210 nM (Table S1, Fig. S1a), and then decreased in deep layers (LIW and MDW, <inline-formula><mml:math id="M189" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M190" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.001). The mean DVF of TAAs (<inline-formula><mml:math id="M191" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>3.4) was twice as high as that of
DON (<inline-formula><mml:math id="M192" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>1.5), and as a consequence the TAA-N<inline-formula><mml:math id="M193" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>DON ratio (Fig. S1a) decreased
significantly (<inline-formula><mml:math id="M194" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M195" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.001) in the deep layers compared to the
epipelagic layers (Fig. S1a). TCHOs ranged from 111 to 950 nM and the
contribution of TCHO-C to DOC from 1.3 % to 9.7 % (Fig. S1b). At 6 stations
out of 10, a minimum TCHO value was obtained in the LIW (Fig. S1b). The TCHO-C<inline-formula><mml:math id="M196" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>TAA-C ratio increased significantly in the deep layers compared to
the epipelagic layers (<inline-formula><mml:math id="M197" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M198" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.02) and exhibited particularly high
ratios within the Tyrrhenian Sea MDW layer (ST5: 48; TYR: 24; ST6: 27).</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Ectoenzymatic activities – kinetic trends</title>
      <p id="d1e2842">Examples of different types of kinetics are shown in Fig. 3. In general, the
hydrolysis of LAP and <inline-formula><mml:math id="M199" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU did not completely saturate at 50 <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M substrate concentration but started to reach the asymptotic value <inline-formula><mml:math id="M201" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula>. The
hydrolysis rate of AP reached a maximum around 1 <inline-formula><mml:math id="M202" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M MUF–P. In this
example, significant fits to Michaelis–Menten kinetics were obtained using
all three models. However, significant Michaelis–Menten kinetics were also
obtained regardless of the upper limit in the substrate concentration span
used for the fit (Fig. S2a, b, c). The <inline-formula><mml:math id="M203" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M204" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> characterizing these
kinetics increased with the highest concentration included in the set,
reaching a plateau towards the set with the largest span (more rapidly for
AP; Fig. S2c and f). In order to check for the presence of biphasic
kinetics and the effect of choosing two extreme sets of concentrations
ranges, to determine EEA kinetic parameters we systematically used the three models described in Sect. 2.4. The set of model 1 in the lower range of
substrate concentration represents a compromise between having a sufficient
set of substrate concentrations and significant enzymatic rates detected.
Some kinetics were discarded (i) due to the detection limits at a low
concentration of substrates (it was the case for all the <inline-formula><mml:math id="M205" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU
estimates in LIW and MDW layers; Table S2) or (ii) due to a significant
deviation from the model (in particular, when the rates did not increase
between 2.5 and 50 <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M substrate concentration, leading to abnormally
low values of <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). This occurred in particular for AP, with only 25
kinetics out of 40 showing significant Michaelis–Menten kinetic estimates of
the model based on high concentrations of substrates (see AP model 50; Table S2).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e2918">Michaelis–Menten kinetics for the DCM layer at station FAST. <bold>(a, b, c)</bold> Data are shown by the dots, continuous lines correspond to the nonlinear
regression of the global model (concentration set 0.025 to 50 <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M), and
dotted lines correspond to the nonlinear regression of model 50. <bold>(d, e, f)</bold> Michaelis–Menten kinetics for model 1
(concentration set 0.025–1 <inline-formula><mml:math id="M209" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f03.png"/>

        </fig>

      <p id="d1e2949">For LAP and <inline-formula><mml:math id="M210" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU, <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> were close; the
distribution of these data fit the <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> axis (Fig. 4). For LAP and AP,
<inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was subjected to higher errors than those of their corresponding
<inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. 4) as the percentage of standard error (SE %; Table S2)
of <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was higher than that of <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in most cases (<inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mn mathvariant="normal">40</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> for LAP, <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:mn mathvariant="normal">24</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> for
AP). In contrast, for <inline-formula><mml:math id="M220" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU SE % was higher only in 6 out of 20
cases. The relationships between <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> showed the same
trend, although <inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was generally slightly higher than their
corresponding <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, in particular for <inline-formula><mml:math id="M225" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU. As noted for <inline-formula><mml:math id="M226" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula>,
the SE % was higher for <inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> than for <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in most of the cases
for LAP (<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mn mathvariant="normal">39</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula>) and AP (<inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:mn mathvariant="normal">25</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula>), and the opposite was seen for <inline-formula><mml:math id="M231" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU
(<inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula>). The standard errors in <inline-formula><mml:math id="M233" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> were higher than those in their
corresponding <inline-formula><mml:math id="M234" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> (Table S2). For LAP and <inline-formula><mml:math id="M235" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU, <inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was notably
lower than <inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was notably lower than
<inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. For AP, the difference between <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was not so evident, <inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> being closer to <inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. However,
<inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was generally still much higher than <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e3353">Relationships between kinetic parameters resulting from model 1,
model 50 and the global model for the three ectoenzymes: <bold>(a, d)</bold> leucine
aminopeptidase (LAP), <bold>(b, d)</bold> <inline-formula><mml:math id="M248" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase (<inline-formula><mml:math id="M249" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU) and <bold>(c, f)</bold>
alkaline phosphatase (AP). <bold>(a, c, f)</bold> Relationships between <inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and between <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; <bold>(d, e, f)</bold> relationships
between <inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and between <inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Error bars show standard errors. The standard error in <inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in <bold>(d)</bold>,
<bold>(e)</bold> and <bold>(f)</bold> (white dots) is not plotted for clarity.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f04.png"/>

        </fig>

      <?pagebreak page2309?><p id="d1e3502">The biphasic mode itself explained the kinetics of the entire data set in 17
cases out of 40 for LAP, in 18 cases out of 20 for <inline-formula><mml:math id="M259" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU and in 18
cases out of 24 for AP (Table S2). Thus, the biphasic mode was enough on
average to explain 60 % of the cases, with the highest proportions for
<inline-formula><mml:math id="M260" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU. We estimated the degree of difference between the two kinetics
using the “biphasic indicator” developed in Tholosan et al. (1999). This
index tracks the difference between the initial slopes (<inline-formula><mml:math id="M261" display="inline"><mml:mrow><mml:mi mathvariant="normal">Vm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Km</mml:mi></mml:mrow></mml:math></inline-formula>) of
Michaelis–Menten kinetics as (<inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) <inline-formula><mml:math id="M263" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> (<inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>).
The biphasic indicator was particularly marked for <inline-formula><mml:math id="M265" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU (means of 87
in SURF and 47 in DCM layers), but it was highly variable (Table S2). For
LAP the mean index increased from <inline-formula><mml:math id="M266" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 9 in SURF and DCM layers
to <inline-formula><mml:math id="M267" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 16 within LIW and MDW layers; however, due to the
variability in the indicator (Table S2), this increase was insignificant. For
AP the biphasic indicator remained constant (<inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>) between
epipelagic layers (means of 12 in SURF and 6 in the DCM) and deeper layers
sampled (mean of 5 in LIW and 9 in the MDW, respectively, with overall lower
variability than for the two other enzymes; Table S2).</p>
      <p id="d1e3614">As the constants <inline-formula><mml:math id="M269" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M270" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> provided by the global model were very close to
those of model 50, as the standard errors were mostly higher for model 50,
and as the biphasic mode was not observed in all samples, we present here
the kinetic parameters for the global model and model 1 (Figs. 5, 6 and 7 and
Table 2). Moreover, the lowest-concentration range is closer to natural
substrate concentrations.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e3634">Heterotrophic bacterial abundances (BAs), bacterial production (BP)
and ectoenzyme kinetic parameters of the global model (<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) obtained from the entire substrate range (0.025 to 50 <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M)
and of model 1 (<inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) obtained from the low substrate range
(0.025 to 1 <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) for leucine aminopeptidase (LAP), <inline-formula><mml:math id="M277" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase (<inline-formula><mml:math id="M278" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU) and alkaline phosphatase (AP) at the four layers.
Mean <inline-formula><mml:math id="M279" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD and range values given for all stations. Maximum velocity
rates (<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), half-saturation constants (<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>); nk: no kinetics available as there are not enough significant rates to plot
Michaelis–Menten kinetics.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">SURF</oasis:entry>
         <oasis:entry colname="col4">DCM</oasis:entry>
         <oasis:entry colname="col5">LIW</oasis:entry>
         <oasis:entry colname="col6">MDW</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> LAP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M285" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.97 <inline-formula><mml:math id="M286" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.79</oasis:entry>
         <oasis:entry colname="col4">1.20 <inline-formula><mml:math id="M287" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.92</oasis:entry>
         <oasis:entry colname="col5">0.22 <inline-formula><mml:math id="M288" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.18</oasis:entry>
         <oasis:entry colname="col6">0.15 <inline-formula><mml:math id="M289" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.08</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">nmol L<inline-formula><mml:math id="M290" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M291" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.36–2.85</oasis:entry>
         <oasis:entry colname="col4">0.35–2.83</oasis:entry>
         <oasis:entry colname="col5">0.08–0.69</oasis:entry>
         <oasis:entry colname="col6">0.06–0.28</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> LAP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M293" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.29 <inline-formula><mml:math id="M294" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.10</oasis:entry>
         <oasis:entry colname="col4">0.45 <inline-formula><mml:math id="M295" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.25</oasis:entry>
         <oasis:entry colname="col5">0.028 <inline-formula><mml:math id="M296" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.014</oasis:entry>
         <oasis:entry colname="col6">0.017 <inline-formula><mml:math id="M297" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.010</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">nmol L<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.21–0.56</oasis:entry>
         <oasis:entry colname="col4">0.19–0.98</oasis:entry>
         <oasis:entry colname="col5">0.014–0.060</oasis:entry>
         <oasis:entry colname="col6">0.007–0.042</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M301" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M302" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.13 <inline-formula><mml:math id="M303" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04</oasis:entry>
         <oasis:entry colname="col4">0.11 <inline-formula><mml:math id="M304" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.06</oasis:entry>
         <oasis:entry colname="col5">nk</oasis:entry>
         <oasis:entry colname="col6">nk</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">nmol L<inline-formula><mml:math id="M305" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M306" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.08–0.23</oasis:entry>
         <oasis:entry colname="col4">0.03–0.22</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M308" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M309" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.019 <inline-formula><mml:math id="M310" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.009</oasis:entry>
         <oasis:entry colname="col4">0.025 <inline-formula><mml:math id="M311" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.019</oasis:entry>
         <oasis:entry colname="col5">nk</oasis:entry>
         <oasis:entry colname="col6">nk</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">nmol L<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M313" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.012–0.040</oasis:entry>
         <oasis:entry colname="col4">0.014–0.077</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> AP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M315" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">2.52 <inline-formula><mml:math id="M316" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.62</oasis:entry>
         <oasis:entry colname="col4">3.73 <inline-formula><mml:math id="M317" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4.52</oasis:entry>
         <oasis:entry colname="col5">0.38 <inline-formula><mml:math id="M318" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.48</oasis:entry>
         <oasis:entry colname="col6">0.24 <inline-formula><mml:math id="M319" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.40</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">nmol L<inline-formula><mml:math id="M320" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M321" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.30–8.30</oasis:entry>
         <oasis:entry colname="col4">0.11– 14.6</oasis:entry>
         <oasis:entry colname="col5">0.04–1.66</oasis:entry>
         <oasis:entry colname="col6">0.06–1.30</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> AP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M323" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">1.55 <inline-formula><mml:math id="M324" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.58</oasis:entry>
         <oasis:entry colname="col4">3.01 <inline-formula><mml:math id="M325" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>  4.01</oasis:entry>
         <oasis:entry colname="col5">0.24 <inline-formula><mml:math id="M326" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.33</oasis:entry>
         <oasis:entry colname="col6">0.12 <inline-formula><mml:math id="M327" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.25</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">nmol L<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M329" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.25–5.62</oasis:entry>
         <oasis:entry colname="col4">0.07–13.2</oasis:entry>
         <oasis:entry colname="col5">0.02–1.11</oasis:entry>
         <oasis:entry colname="col6">0.01–0.80</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M330" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> LAP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M331" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">6.0 <inline-formula><mml:math id="M332" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.6</oasis:entry>
         <oasis:entry colname="col4">5.3 <inline-formula><mml:math id="M333" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>  7.6</oasis:entry>
         <oasis:entry colname="col5">16.4 <inline-formula><mml:math id="M334" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 13.3</oasis:entry>
         <oasis:entry colname="col6">15.2 <inline-formula><mml:math id="M335" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 11.3</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M336" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M</oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.8–20.9</oasis:entry>
         <oasis:entry colname="col4">0.7–25.0</oasis:entry>
         <oasis:entry colname="col5">3.6–38.1</oasis:entry>
         <oasis:entry colname="col6">1.8–34.6</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M337" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> LAP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M338" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.49 <inline-formula><mml:math id="M339" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.18</oasis:entry>
         <oasis:entry colname="col4">0.43 <inline-formula><mml:math id="M340" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.27</oasis:entry>
         <oasis:entry colname="col5">0.23 <inline-formula><mml:math id="M341" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.19</oasis:entry>
         <oasis:entry colname="col6">0.13 <inline-formula><mml:math id="M342" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.11</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M343" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M</oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.12–0.70</oasis:entry>
         <oasis:entry colname="col4">0.07–0.90</oasis:entry>
         <oasis:entry colname="col5">0.10–0.69</oasis:entry>
         <oasis:entry colname="col6">0.01–0.39</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M345" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M346" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">10.6 <inline-formula><mml:math id="M347" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 6.3</oasis:entry>
         <oasis:entry colname="col4">7.7 <inline-formula><mml:math id="M348" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.1</oasis:entry>
         <oasis:entry colname="col5">nk</oasis:entry>
         <oasis:entry colname="col6">nk</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M349" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M</oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">4.4–27.4</oasis:entry>
         <oasis:entry colname="col4">1.2–14.2</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M351" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M352" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.044 <inline-formula><mml:math id="M353" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>  0.071</oasis:entry>
         <oasis:entry colname="col4">0.11 <inline-formula><mml:math id="M354" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.11</oasis:entry>
         <oasis:entry colname="col5">nk</oasis:entry>
         <oasis:entry colname="col6">nk</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M355" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M</oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.009–0.244</oasis:entry>
         <oasis:entry colname="col4">0.01–0.36</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> AP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M357" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.58 <inline-formula><mml:math id="M358" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.67</oasis:entry>
         <oasis:entry colname="col4">0.49 <inline-formula><mml:math id="M359" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>  0.34</oasis:entry>
         <oasis:entry colname="col5">2.25 <inline-formula><mml:math id="M360" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.42</oasis:entry>
         <oasis:entry colname="col6">2.6 <inline-formula><mml:math id="M361" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.5</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M362" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M</oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.09–2.18</oasis:entry>
         <oasis:entry colname="col4">0.18–1.07</oasis:entry>
         <oasis:entry colname="col5">0.17–7.32</oasis:entry>
         <oasis:entry colname="col6">0.4–11.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> AP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M364" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">0.11 <inline-formula><mml:math id="M365" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.03</oasis:entry>
         <oasis:entry colname="col4">0.27 <inline-formula><mml:math id="M366" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.28</oasis:entry>
         <oasis:entry colname="col5">0.37 <inline-formula><mml:math id="M367" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.22</oasis:entry>
         <oasis:entry colname="col6">0.27 <inline-formula><mml:math id="M368" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.16</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M369" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M</oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">0.07–0.14</oasis:entry>
         <oasis:entry colname="col4">0.05–0.80</oasis:entry>
         <oasis:entry colname="col5">0.14–0.89</oasis:entry>
         <oasis:entry colname="col6">0.06–0.52</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">BAs</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M370" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">5.3 <inline-formula><mml:math id="M371" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.6</oasis:entry>
         <oasis:entry colname="col4">5.4 <inline-formula><mml:math id="M372" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.5</oasis:entry>
         <oasis:entry colname="col5">1.13 <inline-formula><mml:math id="M373" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.40</oasis:entry>
         <oasis:entry colname="col6">0.56 <inline-formula><mml:math id="M374" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.15</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">10<inline-formula><mml:math id="M375" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> cells mL<inline-formula><mml:math id="M376" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">2.1–7.8</oasis:entry>
         <oasis:entry colname="col4">4.0–8.5</oasis:entry>
         <oasis:entry colname="col5">0.41–1.91</oasis:entry>
         <oasis:entry colname="col6">0.33–0.78</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">BP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M377" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">37 <inline-formula><mml:math id="M378" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 13</oasis:entry>
         <oasis:entry colname="col4">21 <inline-formula><mml:math id="M379" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7</oasis:entry>
         <oasis:entry colname="col5">0.77 <inline-formula><mml:math id="M380" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.40</oasis:entry>
         <oasis:entry colname="col6">0.27 <inline-formula><mml:math id="M381" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.19</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">ng C L<inline-formula><mml:math id="M382" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M383" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">26–64</oasis:entry>
         <oasis:entry colname="col4">12–32</oasis:entry>
         <oasis:entry colname="col5">0.39–1.60</oasis:entry>
         <oasis:entry colname="col6">0.07–0.60</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e5225">For each enzyme (LAP, <inline-formula><mml:math id="M384" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU, AP) and the two models (model 1, global
model), <inline-formula><mml:math id="M385" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> was of the same order of magnitude at the SURF and DCM layers
(Figs. 5, 6, 7). In all layers, the highest mean <inline-formula><mml:math id="M386" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> was obtained for AP,
followed by LAP and then <inline-formula><mml:math id="M387" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU, independently of the model used (Table 2).</p>
      <p id="d1e5257">For LAP (Fig. 5), <inline-formula><mml:math id="M388" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was on average 3 times higher than <inline-formula><mml:math id="M389" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in
both SURF and DCM layers, but the differences between these two rates
increased with depth (<inline-formula><mml:math id="M390" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>8 in LIW layers, <inline-formula><mml:math id="M391" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>12 in MDW layers). <inline-formula><mml:math id="M392" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> decreased
from epipelagic to mesopelagic layers by a factor of <inline-formula><mml:math id="M393" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>8 on average, while
<inline-formula><mml:math id="M394" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> decreased by a factor <inline-formula><mml:math id="M395" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>19 (Fig. 5a). However, the decrease was more
prominent at stations ST10 to ST5 in the western basin, while in Tyrrhenian
waters (ST5, TYR and ST6) <inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> did not show such a marked decrease
with depth. The average <inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratio for LAP was 132.
<inline-formula><mml:math id="M398" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of LAP showed variable patterns with depth. Within the LIW and
MDW layers, <inline-formula><mml:math id="M399" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was of the same order of magnitude as in the
surface, sometimes even higher (FAST, ST 3, ST5, ST6, ION), particularly in the Tyrrhenian and Ionian seas (Fig. 5b). <inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> decreased with depth at the
western<?pagebreak page2310?> stations (ST10 to ST3), whereas for stations 4, 6 and ION <inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
was of the same order of magnitude at all depths.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e5411">Distribution of kinetic parameters <inline-formula><mml:math id="M402" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> <bold>(a)</bold> and <inline-formula><mml:math id="M403" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> <bold>(b)</bold> for leucine
aminopeptidase (LAP) calculated from model 1 (<inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and the
global model (<inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). Error bars represent the standard
errors derived from the nonlinear regressions.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e5487">Distribution of kinetic parameters <inline-formula><mml:math id="M408" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> <bold>(a)</bold> and <inline-formula><mml:math id="M409" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> <bold>(b)</bold> for <inline-formula><mml:math id="M410" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase (<inline-formula><mml:math id="M411" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU) calculated from model 1 (<inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M413" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and
the global model (<inline-formula><mml:math id="M414" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M415" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) in SURF and DCM. Error bars
represent the standard errors derived from the nonlinear regressions. In
the LIW and MDW layers, kinetics were impossible to compute due to the low
number of measurable rates (see results). The black bar in <bold>(a)</bold> is assumed to
represent a minimal value for <inline-formula><mml:math id="M416" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f06.png"/>

        </fig>

      <p id="d1e5590">For the LIW and MDW layers, <inline-formula><mml:math id="M417" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU kinetics could not be assessed since
an increase in fluorescence versus time was found only for the higher substrate
concentrations used. The means of <inline-formula><mml:math id="M418" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU rates measurable at depth were
0.010 <inline-formula><mml:math id="M419" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.006 nmol L<inline-formula><mml:math id="M420" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M421" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the LIW layer and 0.008 <inline-formula><mml:math id="M422" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.006 nmol L<inline-formula><mml:math id="M423" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M424" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the MDW layer (Fig. 6, Table 2).
In the epipelagic layers (Fig. 6), <inline-formula><mml:math id="M425" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was on average 7 and 5 times
higher than <inline-formula><mml:math id="M426" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in SURF and DCM layers, respectively. The ratio
<inline-formula><mml:math id="M427" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was greater than those observed in the same layers for
LAP or AP (Fig. 6a). The average <inline-formula><mml:math id="M428" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratio for <inline-formula><mml:math id="M429" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU
was 311. While <inline-formula><mml:math id="M430" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was of the same order of magnitude or slightly
lower in the DCM compared to the SURF layers, the opposite trend was
observed for <inline-formula><mml:math id="M431" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which tended to be higher within the DCM layer (Fig. 6b). Among the three ectoenzymes, <inline-formula><mml:math id="M432" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU showed the lowest longitudinal
variability within surface layers (the longitudinal coefficient of variation
(CV) was 34 % for <inline-formula><mml:math id="M433" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and 45 % for <inline-formula><mml:math id="M434" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e5793">Distribution of kinetic parameters <inline-formula><mml:math id="M435" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> <bold>(a)</bold> and <inline-formula><mml:math id="M436" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> <bold>(b)</bold> for alkaline
phosphatase (AP) calculated from model 1 (<inline-formula><mml:math id="M437" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M438" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and the
global model (<inline-formula><mml:math id="M439" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M440" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). Error bars are the standard errors
derived from the nonlinear regressions.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f07.png"/>

        </fig>

      <?pagebreak page2311?><p id="d1e5867">AP was the enzyme for which <inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M442" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were the closest
(the average <inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratio for the whole data set was 1.9 <inline-formula><mml:math id="M444" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.2) (Figs. 4c, 7a). Fits to model 50, using 2.5 to 50 <inline-formula><mml:math id="M445" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M
concentration sets, were often not significant (Table S2) because the rates
stayed constant when adding these concentrations. AP within the SURF layer
showed pronounced relative longitudinal variability, with longitudinal CV
close to 100 % for <inline-formula><mml:math id="M446" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M447" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Table 2). Within the SURF
layers AP increased towards the east, from a range of 0.5–0.9 nmol L<inline-formula><mml:math id="M448" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M449" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for <inline-formula><mml:math id="M450" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at ST10 and FAST up to 8 nmol L<inline-formula><mml:math id="M451" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M452" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at
ION. Both AP <inline-formula><mml:math id="M453" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M454" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> decreased with depth (Fig. 7a),
although both AP <inline-formula><mml:math id="M455" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and AP <inline-formula><mml:math id="M456" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> could be higher within the DCM
layer than in the SURF layer (ST1, 2, 5 TYR, ION). At all stations <inline-formula><mml:math id="M457" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> in the
MDW was equal to or lower than that in the LIW. DVF was large, varying from
<inline-formula><mml:math id="M458" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.8 to <inline-formula><mml:math id="M459" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>71 for <inline-formula><mml:math id="M460" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, with lower values at ST10 (<inline-formula><mml:math id="M461" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>1.8), FAST (<inline-formula><mml:math id="M462" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>3.2) and
ST3 (<inline-formula><mml:math id="M463" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>2.4) and the highest DVF at ST1 (<inline-formula><mml:math id="M464" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>34), ST2 (<inline-formula><mml:math id="M465" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>71) and ION (<inline-formula><mml:math id="M466" display="inline"><mml:mo lspace="0mm">×</mml:mo></mml:math></inline-formula>54). AP
<inline-formula><mml:math id="M467" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was on average 6 times higher than <inline-formula><mml:math id="M468" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M469" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> increased
more with depth (DVF <inline-formula><mml:math id="M470" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 0 at eight stations and ranging from <inline-formula><mml:math id="M471" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4 to
<inline-formula><mml:math id="M472" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>19) than <inline-formula><mml:math id="M473" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (DVF <inline-formula><mml:math id="M474" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 0 at nine stations and ranging <inline-formula><mml:math id="M475" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.9 to
<inline-formula><mml:math id="M476" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.8; see ST1 and ST5). However, these differences between AP <inline-formula><mml:math id="M477" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
AP <inline-formula><mml:math id="M478" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were still the lowest compared to the two other enzymes.</p>
      <p id="d1e6240">The turnover time of ectoenzymes (<inline-formula><mml:math id="M479" display="inline"><mml:mrow><mml:mi mathvariant="normal">Km</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Vm</mml:mi></mml:mrow></mml:math></inline-formula> ratio) drives the activity at low
concentrations of substrates. The incidence of the tested set of substrate
concentration is very important in this parameter as turnover times are
systematically lower for the 0.025–1 <inline-formula><mml:math id="M480" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M concentration set (Table 3).
The turnover times were the shortest for AP and the longest for <inline-formula><mml:math id="M481" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><?xmltex \currentcnt{3}?><label>Table 3</label><caption><p id="d1e6275">Turnover times of ectoenzymes (<inline-formula><mml:math id="M482" display="inline"><mml:mrow><mml:mi mathvariant="normal">Km</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Vm</mml:mi></mml:mrow></mml:math></inline-formula> ratio). Mean <inline-formula><mml:math id="M483" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD and
range values given. For leucine aminopeptidase (LAP), <inline-formula><mml:math id="M484" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase (<inline-formula><mml:math id="M485" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU) and alkaline phosphatase (AP). The turnover times are calculated
from the global model (<inline-formula><mml:math id="M486" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) or the model 1
(<inline-formula><mml:math id="M487" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>); nk: no kinetics available as there are not enough significant
rates to plot Michaelis–Menten kinetics.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Units: days</oasis:entry>
         <oasis:entry colname="col3">SURF</oasis:entry>
         <oasis:entry colname="col4">DCM</oasis:entry>
         <oasis:entry colname="col5">LIW</oasis:entry>
         <oasis:entry colname="col6">MDW</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M488" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> LAP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M489" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">255 <inline-formula><mml:math id="M490" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 79</oasis:entry>
         <oasis:entry colname="col4">158 <inline-formula><mml:math id="M491" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 182</oasis:entry>
         <oasis:entry colname="col5">3394 <inline-formula><mml:math id="M492" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2629</oasis:entry>
         <oasis:entry colname="col6">4161 <inline-formula><mml:math id="M493" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1806</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">94–340</oasis:entry>
         <oasis:entry colname="col4">40–663</oasis:entry>
         <oasis:entry colname="col5">1294–9016</oasis:entry>
         <oasis:entry colname="col6">1308–7028</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M494" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> LAP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M495" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">74 <inline-formula><mml:math id="M496" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 26</oasis:entry>
         <oasis:entry colname="col4">42 <inline-formula><mml:math id="M497" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 22</oasis:entry>
         <oasis:entry colname="col5">345 <inline-formula><mml:math id="M498" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 235</oasis:entry>
         <oasis:entry colname="col6">343 <inline-formula><mml:math id="M499" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 298</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">15–106</oasis:entry>
         <oasis:entry colname="col4">15–82</oasis:entry>
         <oasis:entry colname="col5">141–985</oasis:entry>
         <oasis:entry colname="col6">55–959</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M500" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M501" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M502" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">3464 <inline-formula><mml:math id="M503" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1576</oasis:entry>
         <oasis:entry colname="col4">3091 <inline-formula><mml:math id="M504" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1551</oasis:entry>
         <oasis:entry colname="col5">nk</oasis:entry>
         <oasis:entry colname="col6">nk</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">1997-7395</oasis:entry>
         <oasis:entry colname="col4">328-5481</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M505" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M506" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/></mml:mrow></mml:msub><mml:mi mathvariant="italic">β</mml:mi></mml:mrow></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M507" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">126 <inline-formula><mml:math id="M508" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 233</oasis:entry>
         <oasis:entry colname="col4">247 <inline-formula><mml:math id="M509" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 273</oasis:entry>
         <oasis:entry colname="col5">nk</oasis:entry>
         <oasis:entry colname="col6">nk</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">20-784</oasis:entry>
         <oasis:entry colname="col4">15-873</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M510" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> AP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M511" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">12 <inline-formula><mml:math id="M512" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9</oasis:entry>
         <oasis:entry colname="col4">39 <inline-formula><mml:math id="M513" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 46</oasis:entry>
         <oasis:entry colname="col5">563 <inline-formula><mml:math id="M514" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 542</oasis:entry>
         <oasis:entry colname="col6">914 <inline-formula><mml:math id="M515" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 817</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">2–33</oasis:entry>
         <oasis:entry colname="col4">0.7–113</oasis:entry>
         <oasis:entry colname="col5">16–1441</oasis:entry>
         <oasis:entry colname="col6">20–2719</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M516" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M517" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> AP</oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M518" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD</oasis:entry>
         <oasis:entry colname="col3">5.6 <inline-formula><mml:math id="M519" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.0</oasis:entry>
         <oasis:entry colname="col4">27 <inline-formula><mml:math id="M520" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>  37</oasis:entry>
         <oasis:entry colname="col5">268 <inline-formula><mml:math id="M521" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 349</oasis:entry>
         <oasis:entry colname="col6">301 <inline-formula><mml:math id="M522" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 172</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Range</oasis:entry>
         <oasis:entry colname="col3">1–17</oasis:entry>
         <oasis:entry colname="col4">0.6–106</oasis:entry>
         <oasis:entry colname="col5">12–1180</oasis:entry>
         <oasis:entry colname="col6">14–594</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Specific activities</title>
      <p id="d1e6974">BP was of the same order of
magnitude within SURF and DCM layers (Fig. S3, Table 2) and decreased
towards deeper layers (DVF 59 <inline-formula><mml:math id="M523" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 23). BA varied less than ectoenzyme <inline-formula><mml:math id="M524" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula>
or BP longitudinally. Further, the decrease in BA with depth was less
pronounced (DVF 7 <inline-formula><mml:math id="M525" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2) than BP. Cell-specific BP (cs-BP) ranged from 1
to <inline-formula><mml:math id="M526" display="inline"><mml:mrow><mml:mn mathvariant="normal">136</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> g C cell<inline-formula><mml:math id="M527" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M528" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Table 4), decreasing with
depth at all stations (DVF ranged from <inline-formula><mml:math id="M529" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>4 to <inline-formula><mml:math id="M530" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>23). For enzymes and BP (Figs. 8 and 9, Table 2), the trend of specific activities was highly<?pagebreak page2312?> variable,
with the highest DVF (decrease with depth) observed for cs-BP or cs-AP.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e7057">Box plot distributions of cell-specific (cs) <inline-formula><mml:math id="M531" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M532" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for leucine aminopeptidase <bold>(a, b)</bold> and alkaline phosphatase <bold>(c, d)</bold>. Box limits are the 25 % and 75 % percentiles; the horizontal bar is
the median; the red cross is the mean; black dots are outliers.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f08.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e7096">Depth variation factor (DVF; unitless) for ectoenzymatic specific activities. DVF is calculated as the mean of pooled data from the SURF and
DCM layers divided by the mean of pooled data from the LIW and MDW layers.
<bold>(a)</bold> DVF of cell-specific leucine aminopeptidase (cs-<inline-formula><mml:math id="M533" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
cs-<inline-formula><mml:math id="M534" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>); <bold>(b)</bold> DVF of cell-specific alkaline phosphatase (cs-<inline-formula><mml:math id="M535" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
and cs-<inline-formula><mml:math id="M536" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>); <bold>(c)</bold> for <inline-formula><mml:math id="M537" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-glucosidase DVF, cell-specific
activities are based on the few detectable rates at high concentration
(yellow dots). Black crosses show the DVF of cell-specific heterotrophic
prokaryotic production (cs-BP).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f09.png"/>

        </fig>

      <p id="d1e7167">For LAP, specific activities ranged from 0.1–<inline-formula><mml:math id="M538" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> to 0.7–<inline-formula><mml:math id="M539" display="inline"><mml:mrow><mml:mn mathvariant="normal">8</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> mol leu cell<inline-formula><mml:math id="M540" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M541" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, based on <inline-formula><mml:math id="M542" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M543" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rates, respectively (Fig. 8a, b; Table 4 for <inline-formula><mml:math id="M544" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). A
significant decrease with depth from epipelagic waters to deep waters was
only found for cs-<inline-formula><mml:math id="M545" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> LAP but not for cs-<inline-formula><mml:math id="M546" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> LAP (<inline-formula><mml:math id="M547" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M548" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.001; Fig. 9a). While cell-specific LAP <inline-formula><mml:math id="M549" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> decreased with depth, the
LAP <inline-formula><mml:math id="M550" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> per unit BP increased with depth at all stations (Table 4, Fig. 9a).</p>
      <p id="d1e7323">For AP, specific activities ranged from 0.11 to <inline-formula><mml:math id="M551" display="inline"><mml:mrow><mml:mn mathvariant="normal">32</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> mol P cell<inline-formula><mml:math id="M552" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M553" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and from 0.14 to <inline-formula><mml:math id="M554" display="inline"><mml:mrow><mml:mn mathvariant="normal">39</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> mol P cell<inline-formula><mml:math id="M555" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M556" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> based on <inline-formula><mml:math id="M557" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M558" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> rates, respectively, not
differing significantly due to the small differences between AP <inline-formula><mml:math id="M559" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
AP <inline-formula><mml:math id="M560" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. 8c, d). Cs-AP exhibited either an increase (DVF
<inline-formula><mml:math id="M561" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 1) or a decrease (DVF <inline-formula><mml:math id="M562" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 1) with depth (Fig. 9b). AP
<inline-formula><mml:math id="M563" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> per unit BP decreased with depth at all stations except at ION,
whereas AP <inline-formula><mml:math id="M564" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> per unit cell increased in 7 cases out of 10.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><?xmltex \currentcnt{4}?><label>Table 4</label><caption><p id="d1e7495">Range of different specific activities calculated using <inline-formula><mml:math id="M565" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
and specific to either (i) abundance of total heterotrophic prokaryotes (cell-specific – cs – activities) or (ii) heterotrophic bacterial production (per BP
LAP, per BP <inline-formula><mml:math id="M566" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU, per BP AP). DVF is the “depth variation factor”,
calculated for each station as the mean value in epipelagic water (SURF and DCM
data) divided by the mean in deep waters (LIW and MDW). The distribution of
cs-<inline-formula><mml:math id="M567" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and cs-<inline-formula><mml:math id="M568" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for AP and LAP is also presented in Fig. 8. nd: not determined. </p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Enzyme</oasis:entry>
         <oasis:entry colname="col2">Units</oasis:entry>
         <oasis:entry colname="col3">SURF</oasis:entry>
         <oasis:entry colname="col4">DCM</oasis:entry>
         <oasis:entry colname="col5">LIW</oasis:entry>
         <oasis:entry colname="col6">MDW</oasis:entry>
         <oasis:entry colname="col7">DVF</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">cs-LAP</oasis:entry>
         <oasis:entry colname="col2">10<inline-formula><mml:math id="M569" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> mol leu  cell<inline-formula><mml:math id="M570" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M571" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.33–1.52</oasis:entry>
         <oasis:entry colname="col4">0.44–2.18</oasis:entry>
         <oasis:entry colname="col5">0.11–0.70</oasis:entry>
         <oasis:entry colname="col6">0.13–0.54</oasis:entry>
         <oasis:entry colname="col7">1.3–9.6</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">cs-<inline-formula><mml:math id="M572" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">10<inline-formula><mml:math id="M573" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> mol glucose cell<inline-formula><mml:math id="M574" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M575" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.02–0.11</oasis:entry>
         <oasis:entry colname="col4">0.02–0.17</oasis:entry>
         <oasis:entry colname="col5">nd</oasis:entry>
         <oasis:entry colname="col6">nd</oasis:entry>
         <oasis:entry colname="col7">nd</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">cs-AP</oasis:entry>
         <oasis:entry colname="col2">10<inline-formula><mml:math id="M576" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> mol P cell<inline-formula><mml:math id="M577" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M578" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.45–26</oasis:entry>
         <oasis:entry colname="col4">0.11–32</oasis:entry>
         <oasis:entry colname="col5">0.13–11</oasis:entry>
         <oasis:entry colname="col6">0.17–23</oasis:entry>
         <oasis:entry colname="col7">0.1–28</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">cs-BP</oasis:entry>
         <oasis:entry colname="col2">10<inline-formula><mml:math id="M579" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>g C cell<inline-formula><mml:math id="M580" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M581" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">46–136</oasis:entry>
         <oasis:entry colname="col4">25–60</oasis:entry>
         <oasis:entry colname="col5">3–17</oasis:entry>
         <oasis:entry colname="col6">1–14</oasis:entry>
         <oasis:entry colname="col7">4–23</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Per BP LAP</oasis:entry>
         <oasis:entry colname="col2">nmol AA nmol C<inline-formula><mml:math id="M582" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.04–0.24</oasis:entry>
         <oasis:entry colname="col4">0.12–0.44</oasis:entry>
         <oasis:entry colname="col5">0.21–1.08</oasis:entry>
         <oasis:entry colname="col6">0.36–3.03</oasis:entry>
         <oasis:entry colname="col7">0.09–0.76</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Per BP <inline-formula><mml:math id="M583" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU</oasis:entry>
         <oasis:entry colname="col2">nmol glucose nmol C<inline-formula><mml:math id="M584" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.003–0.017</oasis:entry>
         <oasis:entry colname="col4">0.007–0.034</oasis:entry>
         <oasis:entry colname="col5">nd</oasis:entry>
         <oasis:entry colname="col6">nd</oasis:entry>
         <oasis:entry colname="col7">nd</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Per BP AP</oasis:entry>
         <oasis:entry colname="col2">nmol P nmol C<inline-formula><mml:math id="M585" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.09–2.3</oasis:entry>
         <oasis:entry colname="col4">0.05–11</oasis:entry>
         <oasis:entry colname="col5">0.46–8</oasis:entry>
         <oasis:entry colname="col6">0.6–40</oasis:entry>
         <oasis:entry colname="col7">0.04–1.7</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>In situ hydrolysis rates</title>
      <p id="d1e7961">The in situ hydrolysis rates of TAAs by LAP were higher: <inline-formula><mml:math id="M586" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3
times higher in epipelagic and <inline-formula><mml:math id="M587" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7 times higher in deep waters with
the model 1 constants as compared to the global model (Fig. 10). <inline-formula><mml:math id="M588" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
was much higher than TAA concentrations (26- to 300-fold depending on the
layers; Tables 2,  S1). This difference was also the case for <inline-formula><mml:math id="M589" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
but the ratio between <inline-formula><mml:math id="M590" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and TAAs differed by factors of 2 to 3
depending on depth layer. Consequently, in situ  TAA hydrolysis rates by LAP based on
the global model represented a small percentage of <inline-formula><mml:math id="M591" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (highest means of
11 % in the DCM and minimum mean value 0.6 % in the MDW). However, in situ rates based on model 1 represented a higher proportion of <inline-formula><mml:math id="M592" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (means of 30 %
to 39 % depending on the layer).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e8036">In situ hydrolysis rates of proteins (nmol N L<inline-formula><mml:math id="M593" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M594" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>),
determined from TAA and LAP ectoenzyme kinetics for the high- and low-affinity systems, and heterotrophic bacterial nitrogen demand, determined
from BP assuming a <inline-formula><mml:math id="M595" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> molar ratio of 5 and no active excretion of nitrogen.
<bold>(a)</bold> Epipelagic layers (SURF, DCM), <bold>(b)</bold> deeper layers (LIW, MDW).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f10.png"/>

        </fig>

      <?pagebreak page2314?><p id="d1e8087">The in situ hydrolysis rates of TCHOs by <inline-formula><mml:math id="M596" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU were <inline-formula><mml:math id="M597" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2.5 times higher using model 1 than using global model in epipelagic layers (Fig. 11). <inline-formula><mml:math id="M598" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was higher than in situ TCHO concentrations (Tables 2,  S1) by a factor of <inline-formula><mml:math id="M599" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 18 within SURF and 22 within the DCM.
Consequently, in situ  <inline-formula><mml:math id="M600" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU hydrolysis rates based on the global model were quasi-proportional to the turnover rate <inline-formula><mml:math id="M601" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and represented a mean of
7 % of the <inline-formula><mml:math id="M602" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in epipelagic layers. <inline-formula><mml:math id="M603" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was much lower
than in situ TCHO concentrations (by a factor of <inline-formula><mml:math id="M604" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 31 in SURF and 8 at the DCM), and thus most in situ rates based on model 1 were close to
<inline-formula><mml:math id="M605" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (93 % in SURF, 79 % at the DCM).</p>
</sec>
</sec>
<?pagebreak page2315?><sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>The use of a broader set of substrate concentrations changes our
interpretation of ectoenzyme kinetics</title>
      <p id="d1e8206">The idea that ectoenzyme kinetics are not monophasic is neither new nor
surprising (Sinsabaugh and Follstad Shah, 2012, and references therein).
However, despite the “sea of gradients” encountered by marine bacteria
(Stocker, 2012), multiphasic kinetics are seldom considered. In this work,
we attempt to compare different concentration sets of fluorogenic substrates
in order to evaluate the consequences for the estimated kinetic parameters in
relation to the in situ  natural concentrations of the substrates. In the coastal,
epipelagic waters of the Mediterranean Sea, Unanue et al. (1999) used a set
of concentrations ranging from 1 nM to 500 <inline-formula><mml:math id="M606" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M to reveal biphasic
kinetics with a switch between the two phases at around 10 <inline-formula><mml:math id="M607" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for LAP
and 1–25 <inline-formula><mml:math id="M608" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M for <inline-formula><mml:math id="M609" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU. They referred to “low-affinity” enzymes
and “high-affinity” enzymes. In the Toulon Bay (NW Mediterranean Sea),
Bogé et al. (2012) used a MUF–P range from 0.03 to 30 <inline-formula><mml:math id="M610" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M and
described biphasic AP kinetics, with a switch between the two enzymatic
systems around 0.4 <inline-formula><mml:math id="M611" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M. In our study, the biphasic indicator
<inline-formula><mml:math id="M612" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">50</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was used to determine the degree
of difference between the two Michaelis–Menten LAP kinetics. The differences
between the two LAP enzymatic systems in the water column increased with
depth and could be as large as that found in sediment (biphasic indicator of 20; Tholosan et al., 1999), in which large gradients of organic matter
concentrations are found. However, this was not the case for all enzymes:
for AP, the differences were small and consistent with depth gradients. The
differences between the high- and low-affinity enzyme were greater for <inline-formula><mml:math id="M613" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU.</p>
      <p id="d1e8309">By comparing model 1, model 50 and the global model and from the analysis
presented in Fig. S2, it is clear that the choice of the highest
concentration used in the Michaelis–Menten kinetics is crucial. We thus decided not to focus our discussion on the presence of biphasic
kinetics or lack thereof. Rather, we compared the effects of choosing a set of
concentration ranges sufficiently low to obtain measurable rates but at the
same time encompassing the natural range of substrates (model 1 representing
the high-affinity system). We discuss the enzymatic properties obtained with
the global model, which refers better to the concentration generally<?pagebreak page2316?> used in
the literature but also reflected a low-affinity system compared to model 1.</p>
      <p id="d1e8312">Enzymatic kinetic parameters are also relevant for the interpretation of the
hydrolysis of the substrate in terms of quality and quantity. For instance,
the LAP <inline-formula><mml:math id="M614" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is much higher than <inline-formula><mml:math id="M615" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU <inline-formula><mml:math id="M616" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> probably
because LAP is not selected for low-concentration ranges, in contrast to
<inline-formula><mml:math id="M617" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU (Christian and Karl, 1995) and AP. It is also possible, however,
that when the fluorogenic substrates are in the same concentration range as
the natural substrates, this leads to a competition for the active sites. We
can surmise that <inline-formula><mml:math id="M618" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values, although lower than published values, are
still potentially overestimated. Another difference in the response to the
tested range of concentrations for each substrate is the <inline-formula><mml:math id="M619" display="inline"><mml:mrow><mml:mi mathvariant="normal">Km</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Vm</mml:mi></mml:mrow></mml:math></inline-formula> ratio: a lower
ratio indicates the adaptation to hydrolyze substrates at low
concentrations. This should be considered carefully when comparing reported
values.</p>
      <p id="d1e8377">We have shown that the differences between the <inline-formula><mml:math id="M620" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M621" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> of the low- and high-affinity enzymes might change with the nature of the enzyme, with depth and
regionally. We will develop the different interpretation emerging from (i) the increase or decrease with depth, (ii) the use of enzymatic ratio as
indicators of nutrient availability or DOM quality, and (iii) the estimates of
in situ hydrolysis rates and their contribution to heterotrophic bacterial carbon
or nitrogen demand.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><?xmltex \def\figurename{Figure}?><label>Figure 11</label><caption><p id="d1e8397">In situ hydrolysis rates of carbohydrates and proteins (nmol C L<inline-formula><mml:math id="M622" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M623" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), determined from TAAs, TCHOs, and LAP and <inline-formula><mml:math id="M624" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU ectoenzymatic
kinetics for the low- and high-affinity systems, and heterotrophic bacterial
carbon demand (BCD), determined from BP assuming a bacterial growth efficiency of 10 % in
epipelagic waters. Note the different scale for bacterial carbon demand on
the right.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://bg.copernicus.org/articles/18/2301/2021/bg-18-2301-2021-f11.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>How the set of concentrations used affects ectoenzymatic kinetic
trends with depth: possible links with access to particles</title>
      <p id="d1e8445">As shown by this study, depending on the range of concentrations tested,
different conclusions can be drawn regarding the increase or at least
maintenance of specific levels of activity within deep layers (Koike and
Nagata, 1997; Hoppe and Ulrich, 1999; Baltar et al., 2009b). Many factors,
such as the freshness of the suspended particles, particle fluxes, a recent
convection event, lateral advection, and the seasonality and
taxonomic composition of phytoplankton, could influence dynamics at depth,
particularly in the mesopelagic layers (Tamburini et al., 2002, 2009; Azzaro
et al., 2012; Caruso et al., 2013; Severin et al., 2016).</p>
      <p id="d1e8448">AP was the enzyme that showed the smallest contrasts between different
kinetics. In this study, the use of MUF–P concentrations ranging between
0.025 and 50 <inline-formula><mml:math id="M625" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M highlighted that AP rates are well described with the
Michaelis–Menten kinetic model 1, with saturation reached around 1 <inline-formula><mml:math id="M626" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M. We thus assumed that this AP activity should belong to free-living
bacteria and/or dissolved enzymes (<inline-formula><mml:math id="M627" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M628" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m fraction) adapted
to low substrate concentrations. These results agree with the DOP concentrations
measured, ranging between 12 and 122 nM in epipelagic waters (Pulido-Villena
et al.,   2021) and, when detectable, between 20 and 51 nM in
deep layers. Using fractionation–filtration procedures, it has been shown
that more than 50 % of the AP activity could be measured in the <inline-formula><mml:math id="M629" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M630" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m size fraction (Baltar, 2018, and references therein), whereas
the dissolved fraction of other enzymes is generally lower. Hoppe and Ulrich (1999) found a contribution by the <inline-formula><mml:math id="M631" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M632" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m fraction of
41 % for AP, 22 % for LAP and only 10 % for <inline-formula><mml:math id="M633" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU. During the
PEACETIME cruise we ran a few size fractionation experiments in SURF and DCM
samples (results not shown). The contribution of the <inline-formula><mml:math id="M634" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula>  0.2 <inline-formula><mml:math id="M635" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m
fraction to the bulk activity was on average 60 <inline-formula><mml:math id="M636" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 34 % (<inline-formula><mml:math id="M637" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula>)
for AP, 25 <inline-formula><mml:math id="M638" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 16 % (<inline-formula><mml:math id="M639" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula>) for <inline-formula><mml:math id="M640" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU and 41 <inline-formula><mml:math id="M641" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 16 %
(<inline-formula><mml:math id="M642" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula>) for LAP, confirming these trends in the Mediterranean Sea.</p>
      <p id="d1e8601">Increasing AP activities per cell with depth have been reported in the Indian
Ocean (down to 3000 m depth; Hoppe and Ullrich, 1999), in the subtropical
Atlantic Ocean (down to 4500 m depth; Baltar et al., 2009b) and in the
central Pacific Ocean (down to 4000 m depth; Koike and Nagata, 1997). These
authors used high concentrations of MUF–P (150 to 1200 <inline-formula><mml:math id="M643" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) that could
stimulate ectoenzymes of cells attached to suspended or sinking particles and thus adapted to higher-concentration ranges. However, these trends were
also obtained using low concentrations (max 5 <inline-formula><mml:math id="M644" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M MUF–P), at depths
down to 3500 m in the Tyrrhenian Sea (Tamburini et al., 2009). In the
bathypelagic layers of the central Pacific, AP rates were up to half those
observed in the epipelagic layer, but the fraction <inline-formula><mml:math id="M645" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M646" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m
was not included in the AP measurements (Koike and Nagata, 1997). These
authors suggested that the deep-sea AP activity is related to fragmentation
and dissolution of rapidly sinking particles. Indeed, it has been shown that
the ratios of AP activity determined on particles to the AP activities in
bulk seawater were highest among different tested enzymes (Smith et al.,
1992). Note, however, that our study sampled only the top of mesopelagic
layers (1000 m). Tamburini et al. (2002) obtained a different relative
contribution of deep-sea samples when using MUF–P concentrations of 25 nM or
5 <inline-formula><mml:math id="M647" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M at the DYFAMED station in the NW Mediterranean Sea (down to 2000 m depth), further showing the artifact of the concentration used. The deep
enzymatic activities could be <inline-formula><mml:math id="M648" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4 to <inline-formula><mml:math id="M649" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.6 times higher due to the effect of
hydrostatic pressure. Specific AP decreased at five stations and increased at three
other stations, and at the two remaining stations, specific <inline-formula><mml:math id="M650" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
increased, while specific <inline-formula><mml:math id="M651" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> decreased (Fig. 9b). Similarly for the
deepest layers sampled (FAST: 2500 m; ION: 3000 m), results also showed
no depth trend since specific AP decreased with depth at ION and increased
at FAST. The POC <inline-formula><mml:math id="M652" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> POP ratio did not change with depth. However, the
variability in the trend with depth seen for the specific AP activities was
also observed in the DOC <inline-formula><mml:math id="M653" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> DOP ratio. In short, while we expected to see an
increase in specific activities with depth due to a preferential removal of
P, this was not systematically the case.</p>
      <p id="d1e8694">LAP activities showed more pronounced trends with depth than AP.
Cell-specific LAP showed contradictory results: at all stations
cell-specific <inline-formula><mml:math id="M654" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> decreases with depth (according to the DVF criterion;
Fig. 9a), whereas <inline-formula><mml:math id="M655" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> remained stable (2 stations out of 10) or
increased with depth (5<?pagebreak page2317?> stations out of 10). Using a high concentration of
MCA-leu, other authors have found an increase in LAP activity per cell with
depth in bathypelagic layers (Zaccone et al., 2012; Caruso et al., 2013).</p>
      <p id="d1e8720">The use of a large concentration set also impacts the <inline-formula><mml:math id="M656" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> values because if
only a high-concentration range is used, the kinetic contribution of any
enzyme with high affinity would be hidden. Baltar et al. (2009b), using a
concentration of substrates ranging from 0.6 to 1200 <inline-formula><mml:math id="M657" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M, reported an
increase in the <inline-formula><mml:math id="M658" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> of LAP (from <inline-formula><mml:math id="M659" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 400 to 1200 <inline-formula><mml:math id="M660" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) and
AP (from <inline-formula><mml:math id="M661" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 to 23 <inline-formula><mml:math id="M662" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) with depths down to 4500 m in
the subtropical Atlantic. In contrast, Tamburini et al. (2002), using a
concentration of substrates ranging from 0.05 to 50 <inline-formula><mml:math id="M663" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M, obtained
lower <inline-formula><mml:math id="M664" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> values (ranging between 0.4 and 1.1 <inline-formula><mml:math id="M665" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M) for LAP in the
Mediterranean deep waters (down to 2000 m depth). It is however difficult to
come to a conclusion about the effect of the concentration set tested on <inline-formula><mml:math id="M666" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula>
variability with depth by comparing two studies from different environments
and using different sets of substrate concentrations. In our study, where
both kinetics were determined in the same waters, among the two parameters
<inline-formula><mml:math id="M667" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M668" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M669" display="inline"><mml:mi mathvariant="normal">Km</mml:mi></mml:math></inline-formula> showed the largest differences between the two types of
kinetics. At many stations (TYR, ION, FAST and ST10), the <inline-formula><mml:math id="M670" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> of LAP
was stable or decreased with depth, whereas <inline-formula><mml:math id="M671" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> increased, suggesting
that within deep layers LAP activity was linked more to the availability of
suspended particles or fresh organic matter from sinking material than to
DON. Thus, the difference between <inline-formula><mml:math id="M672" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M673" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Km</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> might reflect
adaptive strategies to spatial and/or temporal patchiness in the
distribution of suspended particles. Freshly sinking material was probably
not present in our incubations because of the small volume of water used
but could have contributed to the release of free bacteria, small suspended
particles and DOM within its associated plume (Azam and Long, 2001;
Tamburini et al., 2003; Grossart et al., 2007; Fang et al., 2015). Baltar et
al. (2009a) also suggested that hot spots of activity at depth were
associated with particles. The fact that the <inline-formula><mml:math id="M674" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> ratio of particulate
material increased with depth (from 11–12 to 22–25) but not so much for
DOC <inline-formula><mml:math id="M675" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> DON (from 13–12 to 14–15 from SURF and DCM to LIW and MDW, respectively)
also indicates a preferential utilization of protein substrates from
particles. Recently, Zhao et al. (2020) suggested that deep-sea prokaryotes
and their metabolism are likely associated with particles rather than DOC based on the increasing contribution of genes encoding secretory enzymes. In
contrast to the results for AP, the higher differences between the two LAP
enzymatic systems suggest that the microorganisms responsible for the LAP
activity face large gradients of protein concentrations and are adapted to
pulsed inputs of particles.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>How the set of concentrations used affects interpretation of
enzymatic properties as indicators of nutrient imbalance of DOM quality and
stoichiometry</title>
      <p id="d1e8900">In epipelagic waters, both AP maximum rates (<inline-formula><mml:math id="M676" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M677" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
significantly increased by around 3-fold from the Algerian and Ligurian basins
to the Tyrrhenian Basin (<inline-formula><mml:math id="M678" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> test; <inline-formula><mml:math id="M679" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.002</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M680" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula>, respectively)
and reached maximum values at ION. This longitudinal increase was also
confirmed by specific activities. This increase in cell-specific AP
activities appears to follow a decrease in phosphate availability. While
inorganic phosphate can be assimilated directly through a high-affinity
absorption pathway, the assimilation of DOP requires its mineralization to
free DIP, which is then<?pagebreak page2318?> assimilated. POP is an indicator of living biomass
and enzyme producers, but the correlation between <inline-formula><mml:math id="M681" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> AP and POP was negative
in the surface layers (log–log relationship; <inline-formula><mml:math id="M682" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.86</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M683" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.88</mml:mn></mml:mrow></mml:math></inline-formula> for
<inline-formula><mml:math id="M684" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M685" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, respectively; <inline-formula><mml:math id="M686" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M687" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 0.01 in both cases),
suggesting that the progressive eastward decline in living biomass, and its
phosphate availability was accompanied by increased AP expression. <inline-formula><mml:math id="M688" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> in the
surface did not correlate with DIP; however the relative DIP deficiency
increased eastward, suggested by the deepening of the phosphacline (Table 1), the decrease in average DIP concentrations within the phosphate-depleted
layer and the decrease in P diffusive fluxes reaching the surface layer
(Pulido-Villena et al., 2021). Along a
trans-Mediterranean transect, Zaccone et al. (2012), did not observe a
relation between DIP and AP, although they also found increased values of AP-specific activities in the eastern Mediterranean Sea. Bogé et al. (2012), using a concentration set close to ours (0.03–30 <inline-formula><mml:math id="M689" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M MUF–P), obtained biphasic kinetics with high differences in the two <inline-formula><mml:math id="M690" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> values
(contrary to our results) and described different relationships between <inline-formula><mml:math id="M691" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula>
and DOP or DIP depending on the low- or high-affinity enzyme. Such
differences could be due to the large gradient of trophic conditions in
their study, carried out in a eutrophic bay where DOP and DIP concentration
ranged from 0 to 185 nM and from 0 to 329 nM, respectively. In contrast,
the range of DIP concentrations in our surface water samples was narrow, and
values were very low (4–17 nM).</p>
      <p id="d1e9054">The AP <inline-formula><mml:math id="M692" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> LAP activity ratio can be used as an indicator of N–P imbalance as
demonstrated in enrichment experiments (Sala et al., 2001). In this study
using high concentrations of substrates (200 <inline-formula><mml:math id="M693" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M), the authors
described a decrease in the AP <inline-formula><mml:math id="M694" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> LAP activity ratio following DIP addition
and, conversely, a large increase (10-fold) after the addition of 1 <inline-formula><mml:math id="M695" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M nitrate. In their initial experimental conditions, the ratios ranged from
0.2 to 1.9. We observed a similar low ratio in the western Mediterranean
Sea, but in the Ionian Sea the AP <inline-formula><mml:math id="M696" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> LAP activity ratio reached 17 (<inline-formula><mml:math id="M697" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
and 43 (<inline-formula><mml:math id="M698" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; Fig. S4a), suggesting that nutrient stresses and
imbalances can be as important and variable in different regions of the
Mediterranean. Such imbalances are more visible in the high-affinity
systems.</p>
      <p id="d1e9117">LAP <inline-formula><mml:math id="M699" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M700" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratio is used as an index of the ability of marine
bacteria to preferentially metabolize proteins rather than polysaccharides.
Within epipelagic layers, the prevalence of LAP over <inline-formula><mml:math id="M701" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU is common
in temperate areas (Christian and Karl, 1995; Rath et al., 1993) and at high
latitudes (Misic et al., 2002, Piontek et al., 2014). The LAP <inline-formula><mml:math id="M702" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M703" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU
activity ratio varied widely from the Equator to the Southern Ocean, ranging
from 0.28 to 593 (Sinsabaugh and Follstad Shah, 2012). In the Ross Sea, this
ratio exhibited a relationship with primary production (Misic et al., 2002).
In the Caribbean Sea, along a eutrophic-to-oligotrophic gradient, the
LAP <inline-formula><mml:math id="M704" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M705" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratio increased in oligotrophic conditions (Rath et
al., 1993). In the epipelagic zone, during our study, a small westward
gradient in productivity (18 to 35 mg <inline-formula><mml:math id="M706" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>Chl <inline-formula><mml:math id="M707" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> m<inline-formula><mml:math id="M708" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) was found; LAP <inline-formula><mml:math id="M709" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M710" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratios ranged from east to west between 3 and 17 for
<inline-formula><mml:math id="M711" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and from 8 to 34 for <inline-formula><mml:math id="M712" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. S4b) and thus varied
according to the productivity gradient but also to the concentration set
tested, in agreement with previously reported ratios (10 and 20 for the low-concentration and high-concentration range, respectively; Unanue et al.,
1999). Finally, the LAP <inline-formula><mml:math id="M713" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M714" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratios reported here and in other
studies using low substrate ranges are lower than when using higher
concentration sets: 20–200 in the subarctic Pacific (Fukuda et al., 2000,
using 200 <inline-formula><mml:math id="M715" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M concentration) and 213 at the ALOHA station in the equatorial
Pacific (Christian and Karl, 1995; using L-leucyl-<inline-formula><mml:math id="M716" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-naphthylamine
instead of MCA-leu at 1000 <inline-formula><mml:math id="M717" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M and MUF–<inline-formula><mml:math id="M718" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>glu at 1.6 <inline-formula><mml:math id="M719" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M),
suggesting that the LAP <inline-formula><mml:math id="M720" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M721" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratio is highly variable and
with a nonlinear dependence on the fluorogenic-substrate concentration. As
observed for AP <inline-formula><mml:math id="M722" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> LAP, the LAP <inline-formula><mml:math id="M723" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M724" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratio showed much higher
variations for the low-affinity enzyme.</p>
      <p id="d1e9322">Throughout the water column, variations in the relative activity of
different enzymes are also suggested as a possible indicator of changes in
bacterioplankton nutrition patterns. The LAP <inline-formula><mml:math id="M725" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M726" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratio
decreased with depth, following the decrease in the protein-to-carbohydrate
ratio of particulate material (Misic et al., 2002) as nitrogen is
re-mineralized faster than carbon. However, the TAA-C <inline-formula><mml:math id="M727" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> TCHO-C ratios were
consistently higher within the DCM layer (<inline-formula><mml:math id="M728" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 90 m) than at the
surface, and the LAP <inline-formula><mml:math id="M729" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M730" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratio of both <inline-formula><mml:math id="M731" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M732" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> increased as a consequence, revealing important DON cycling
(relative to DOC) at the DCM in comparison to the mixed layers. Below the
DCM, the particulate <inline-formula><mml:math id="M733" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> ratio increased with depth, and TAA-C /TCHO-C
decreased, likewise indicating a faster hydrolysis of N-rich compounds. We
estimated <inline-formula><mml:math id="M734" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> LAP <inline-formula><mml:math id="M735" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M736" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Vm</mml:mi><mml:mi mathvariant="normal">all</mml:mi></mml:msub><mml:mi mathvariant="italic">β</mml:mi></mml:mrow></mml:math></inline-formula>GLU activity ratios from a few
of the single rates measured at high concentration (most <inline-formula><mml:math id="M737" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU
kinetics at depth were not available) and observed, in contrast to Misic et
al. (2002), an increase in the ratio within deep layers as <inline-formula><mml:math id="M738" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU
decreased faster than LAP with depth. A bias could be due to the absence of
<inline-formula><mml:math id="M739" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU kinetics at depth; nevertheless other authors have also shown an
increase in LAP <inline-formula><mml:math id="M740" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M741" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU activity ratios with depth (Hoppe and Ullrich,
1999, in the Indian Ocean; Placenti et al., 2018, in the Ionian Sea).</p>
</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>How the set of concentrations used affects potential contribution
of macromolecule hydrolysis to bacterial production</title>
      <p id="d1e9477">Our results clearly showed the influence of the concentration set used to
estimate in situ hydrolysis rates. If the experimentally added substrate
concentration is clearly above the possible range of concentrations found in
the natural environment, in situ rates could be largely overestimated. To obtain a
significant determination of the in situ rates, the added substrate concentrations
should be close to the range of variation expected in the studied
environment (Tamburini et al., 2002).</p>
      <?pagebreak page2319?><p id="d1e9480">We compared the in situ LAP hydrolysis rates to the N demand of heterotrophic
prokaryotes (which was based on BP data assuming no active excretion of
nitrogen and a <inline-formula><mml:math id="M742" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> ratio of 5). Similarly, the in situ rates of TAAs plus
TCHOs were compared to the bacterial carbon demand (based on a bacterial
growth efficiency of 10 %; Gazeau et al., 2020; Céa et al., 2014;
Lemée et al., 2002). Using the global model, in situ hydrolysis of TAAs by LAP
contributed only 25 % <inline-formula><mml:math id="M743" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 22 % of the bacterial N demand in
epipelagic layers and 26 % <inline-formula><mml:math id="M744" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 24 % in deep layers. This
contribution increased using the high-affinity enzyme constants (48 % <inline-formula><mml:math id="M745" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 29 % and 180 % <inline-formula><mml:math id="M746" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 154 % in epipelagic layers and deep
layers, respectively). In the North Atlantic, the contribution of LAP
hydrolysis rates of particles (0.3 <inline-formula><mml:math id="M747" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M MCA-leucine added) to bacterial
nitrogen demand varied between 63 % and 87 %, increasing at 200 m.
Crottereau and Delmas (1998) also computed in situ hydrolysis using combined
amino acid concentrations and LAP kinetics and found a range of 6 %–121 %
contribution to bacterial N demand in aquatic eutrophic ponds. A large
variability in LAP hydrolysis contribution to bacterial N demand has also
been detected in coastal estuarine environments using a radio-labeled natural
protein as a substrate (2 %–44 %; Keil and Kirchman, 1993). Piontek et al. (2014) used the turnover of <inline-formula><mml:math id="M748" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU and LAP determined with 1 <inline-formula><mml:math id="M749" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>M
analog substrate concentrations to compute in situ TAA and TCHO hydrolysis
rates along a 79<inline-formula><mml:math id="M750" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N transect in the North Atlantic and showed that
134 % and 52 % of BP could be supported by peptide and polysaccharides
hydrolyzed by enzyme activities, respectively. Based on a bacterial growth
efficiency of 10 %, these fluxes will represent 10 times less, i.e., 13 % and
5 % of bacterial carbon demand, which is of the order of magnitude that
we obtained. In our study, the contribution of TAA hydrolysis to bacterial N
demand was higher in the DCM than in the SURF (10 %–40 % based on the
high-affinity enzyme). Nevertheless, this calculation may be biased as
marine cyanobacteria such as <italic>Synechococcus</italic>  and <italic>Prochlorococcus</italic>, which are dominating phytoplankton groups
in the Mediterranean Sea (Siokou-Frangou et al., 2010), can also express LAP
(Martinez and Azam, 1993) to satisfy their N requirements. During our study,
primary production (PP) peaked in the DCM (Marañón et al., 2021).
Size fractionation of primary production showed the importance of
phytoplankton excretion, which contributed between 20 %–55 % of the total
PP depending on the station (Marañón et al., 2021). Within the surface
mixed layer, other sources of N such as atmospheric deposition could sustain
a significant part of bacterial N demand. The dry atmospheric deposition
(inorganic) of N at all stations within the PEACETIME cruise corresponded to
27 <inline-formula><mml:math id="M751" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 23 % of bacterial N demand (Van Wambeke et al., 2020).</p>
      <p id="d1e9570">The in situ cumulated hydrolysis rates of TCHOs by <inline-formula><mml:math id="M752" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU, estimated only in
epipelagic layers, were <inline-formula><mml:math id="M753" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 times higher using the high-affinity enzyme. We summed C sources coming from the hydrolysis by LAP and
by <inline-formula><mml:math id="M754" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU in epipelagic layers (Fig. 11) and compared them to the
bacterial carbon demand. Dissolved proteins and combined carbohydrates
contributed to only a small fraction of the bacterial carbon demand: 1.5 %
based on the low-affinity enzyme and 3 % based on the high-affinity
enzyme.</p>
      <p id="d1e9594">Only within deeper layers were the hydrolysis rates of TAAs at some stations higher than bacterial N demand, suggesting that proteolysis is one of the
major sources of N for heterotrophic bacteria in aphotic layers. However,
this was only based on the high-affinity enzymes where we found cases of
over-hydrolysis of organic nitrogen (Fig. 10). This over-hydrolysis was
particularly marked in the LIW of the Tyrrhenian Basin, where
over-hydrolysis up to 220 % was obtained as well as higher TAA
concentrations in comparison to “older” LIW in the Algerian Basin.
TAAs decreased faster than DON along the LIW trajectory, indicating that the
labile DON fraction (combined amino acids) was degraded first. Sinking
particles or large aggregates associated with attached bacteria are
considered to be major providers of labile organic matter for free bacteria
(Smith et al., 1992). Within the 5 mL volume of water hydrolyzed for TAA
analysis and the 2 mL water volume used to determine ectoenzymatic
kinetics, most of this particulate detrital pool is underrepresented, and
thus the contribution of TAA hydrolysis to bacterial nitrogen demand is
underestimated. However, there is increasing evidence of release from
particles not only of monomers issued from hydrolysis but also of
ectoenzymes produced by deep-sea prokaryotes attached to particles
themselves (Zhao et al., 2020). This could explain why, in our small
volumes, we still observe multiple kinetics. Studying alkaline phosphatase
activity in the Toulon Bay, Bogé et al. (2013) observed biphasic
kinetics only in the dissolved phase, which also suggests that low-affinity
AP originates from enzyme secretion by prokaryotes attached to particles.
Further, the study of size-fractionated particulate material showed that the
origin of the low-affinity enzymes was mostly within the <inline-formula><mml:math id="M755" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 90 <inline-formula><mml:math id="M756" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m fraction (Bogé et al., 2017).</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e9622">Vertical and regional variability in enzyme activities were found in the
Mediterranean Sea, where heterotrophic prokaryotes face not only carbon but
also N and P limitations. Although biased by the use of artificial
fluorogenic substrates, ectoenzymatic activity is an appropriate tool to
study the adaptation of prokaryotes to the environmental gradients in
stoichiometry, chemical characteristics and organic matter concentrations.
We have shown that the relative increase or decrease in <inline-formula><mml:math id="M757" display="inline"><mml:mi mathvariant="normal">Vm</mml:mi></mml:math></inline-formula> or specific
activities per depth is largely related to the choice of concentration set
used in the kinetic measurements. The activity ratios of AP <inline-formula><mml:math id="M758" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> LAP or
LAP <inline-formula><mml:math id="M759" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M760" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>GLU used to track nutrient imbalances in the DOM pool showed
a larger range of variation in low-affinity enzymes. Finally, to obtain robust
determination of in situ enzymatic  rates, the added substrate concentrations should
be<?pagebreak page2320?> close to the range of variation expected in the studied area. While the
use of the microplate titration technique greatly improved the simultaneous
study of different enzymes, assessments of enzyme kinetics should be
performed systematically in enzymatic studies. Future combination of such
techniques with the chemical identification of DOC and DON pools and
meta-omics as well as the use of marine snow catchers will help our
understanding of the biodegradation of organic matter in the ocean.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e9657">Underlying research data are being used by researcher participants of the PEACETIME campaign to prepare other papers, and therefore data are not publicly accessible at the time of publication. “Biogeochemical dataset collected during the PEACETIME cruise” (Guieu et al., 2020a) will be accessible at <uri>https://www.seanoe.org/data/00645/75747/</uri> (Guieu et al., 2020b) once the special issue is completed (all papers should be published by June 2021).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e9663">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/bg-18-2301-2021-supplement" xlink:title="pdf">https://doi.org/10.5194/bg-18-2301-2021-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e9672">FVW and CT designed the study. FVW, CT, MG and SG sampled and incubated
samples for ectoenzymatic activity on board; FVW and SG analyzed the
ectoenzymatic data. FVW and MG sampled and analyzed BP samples, BZ sampled
and analyzed TAA and TCHO samples, AE managed the TCHO and TAA analysis and
treatments, EP and KD sampled and analyzed DIP with the LWCC
technique, SN sampled and analyzed nutrients and organic matter, VT assisted
in CTD operations and analyzed water masses, JD sampled for DOC and flow
cytometry, PC analyzed bacterial abundances, BM analyzed DOC, and FVW prepared
the paper with contributions from all co-authors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e9678">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="sistatement"><title>Special issue statement</title>

      <p id="d1e9684">This article is part of the special issue “Atmospheric deposition in the low-nutrient–low-chlorophyll (LNLC) ocean: effects on marine life today and in the future (ACP/BG inter-journal SI)”. It is not associated with a conference.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e9690">The authors thank many scientists and
engineers for their assistance with sampling and analyses: Jon Roa for TCHOs, Ruth Flerus for TAA, Joris Guittoneau for nutrients, Thierry Blasco for POC, Julia Uitz and
Céline Dimier for Chl <inline-formula><mml:math id="M761" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (analyzed at the SAPIGH HPLC analytical service at the
IMEV, Villefranche), Ingrid Obernosterer for DOC. We warmly thank Cécile Guieu and
Karine Deboeufs as coordinators of the program PEACETIME and chief scientists of the cruise. We are grateful to
the two anonymous reviewers and the editor Christine Klass for their constructive
and pertinent comments. This study is a contribution to the PEACETIME project (<uri>http://peacetime-project.org</uri>, last access: 30 March 2021), a joint initiative of the MERMEX and ChArMEx components. The PEACETIME cruise was endorsed as a process study by GEOTRACES and is also a contribution to IMBER and SOLAS.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e9705">The project leading to this publication has received funding from CNRS-INSU, IFREMER, CEA, and Météo-France as part of the programme MISTRALS coordinated by INSU (<ext-link xlink:href="https://doi.org/10.17600/17000300" ext-link-type="DOI">10.17600/17000300</ext-link>) and from the European FEDER fund under project no. 1166-39417. The publication of this article is financed by CNRS-INSU.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e9714">This paper was edited by Christine Klaas and reviewed by two anonymous referees.</p>
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<abstract-html><p>Ectoenzymatic activity, prokaryotic heterotrophic
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was carried out in the sub-surface, the deep chlorophyll maximum layer
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large range of concentrations of fluorogenic substrates (0.025 to 50&thinsp;µM). As a consequence, Km (Michaelis–Menten half-saturation constant) and Vm (maximum hydrolysis velocity) parameters were determined for both low- and
high-affinity enzymes for alkaline phosphatase, aminopeptidase (LAP) and
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in situ hydrolysis of N proteins contributed 48&thinsp;%&thinsp;±&thinsp;30&thinsp;% to the
heterotrophic bacterial nitrogen demand within the epipelagic layers and
180&thinsp;%&thinsp;±&thinsp;154&thinsp;% in the Levantine intermediate waters and the upper
part of the mesopelagic layers. The LAP hydrolysis rate was higher than
bacterial N demand only within the deeper layer and only when considering
the high-affinity enzyme. Based on a 10&thinsp;% bacterial growth efficiency, the
cumulative hydrolysis rates of C proteins and C polysaccharides contributed
on average 2.5&thinsp;%&thinsp;±&thinsp;1.3 &thinsp;% to the heterotrophic bacterial carbon
demand in the epipelagic layers sampled (sub-surface and DCM). This study
clearly reveals potential biases in current and past interpretations of the
kinetic parameters for the three enzymes tested based on the fluorogenic-substrate concentration used. In particular, the LAP&thinsp;∕&thinsp;<i>β</i>GLU enzymatic
ratios and some of the depth-related trends differed between the use of
high and low concentrations of fluorogenic substrates.</p></abstract-html>
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