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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \makeatother\@nolinetrue\makeatletter?><?xmltex \bartext{Research article}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-20-1405-2023</article-id><title-group><article-title>Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models
and<?xmltex \hack{\break}?> optimize observing system design</article-title><alt-title>Using machine learning and BGC-Argo floats to assess BGC models</alt-title>
      </title-group><?xmltex \runningtitle{Using machine learning and BGC-Argo floats to assess BGC models}?><?xmltex \runningauthor{A.~Mignot et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Mignot</surname><given-names>Alexandre</given-names></name>
          <email>amignot@mercator-ocean.fr</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Claustre</surname><given-names>Hervé</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Cossarini</surname><given-names>Gianpiero</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7803-8568</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>D'Ortenzio</surname><given-names>Fabrizio</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Gutknecht</surname><given-names>Elodie</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Lamouroux</surname><given-names>Julien</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Lazzari</surname><given-names>Paolo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6819-4612</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Perruche</surname><given-names>Coralie</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1307-049X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Salon</surname><given-names>Stefano</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Sauzède</surname><given-names>Raphaëlle</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9992-5334</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Taillandier</surname><given-names>Vincent</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Teruzzi</surname><given-names>Anna</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0275-2049</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Mercator Ocean International, 31400 Toulouse, France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Laboratoire d'Océanographie de Villefranche, CNRS, Sorbonne Université, <?xmltex \hack{\break}?>06230
Villefranche-sur-Mer, France</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institut de la Mer de Villefranche, CNRS, Sorbonne Université,
06230 Villefranche-sur-Mer, France</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>National Institute of Oceanography and Applied Geophysics – OGS,
34010 Trieste, Italy</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Alexandre Mignot (amignot@mercator-ocean.fr)</corresp></author-notes><pub-date><day>12</day><month>April</month><year>2023</year></pub-date>
      
      <volume>20</volume>
      <issue>7</issue>
      <fpage>1405</fpage><lpage>1422</lpage>
      <history>
        <date date-type="received"><day>7</day><month>January</month><year>2021</year></date>
           <date date-type="rev-request"><day>20</day><month>January</month><year>2021</year></date>
           <date date-type="rev-recd"><day>6</day><month>March</month><year>2023</year></date>
           <date date-type="accepted"><day>8</day><month>March</month><year>2023</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2023 </copyright-statement>
        <copyright-year>2023</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/.html">This article is available from https://bg.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e207">Numerical models of ocean biogeochemistry are becoming the major tools used to detect
and predict the impact of climate change on marine resources and to monitor
ocean health. However, with the continuous improvement of model structure
and spatial resolution, incorporation of these additional degrees of freedom
into fidelity assessment has become increasingly challenging. Here, we
propose a new method to provide information on the model predictive skill in a concise
way. The method is based on the conjoint use of a <inline-formula><mml:math id="M1" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering
technique, assessment metrics, and Biogeochemical-Argo (BGC-Argo) observations. The <inline-formula><mml:math id="M2" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means
algorithm and the assessment metrics reduce the number of model data points
to be evaluated. The metrics evaluate either the model state accuracy or the
skill of the model with respect to capturing emergent properties, such as the deep
chlorophyll maximums and oxygen minimum zones. The use of BGC-Argo
observations as the sole evaluation data set ensures the accuracy of the
data, as it is a homogenous data set with strict sampling methodologies and
data quality control procedures. The method is applied to the Global Ocean Biogeochemistry Analysis and Forecast system of the Copernicus Marine
Service. The model performance is evaluated using the model efficiency
statistical score, which compares the model–observation misfit with the
variability in the observations and, thus, objectively quantifies whether the
model outperforms the BGC-Argo climatology. We show that, overall, the model
surpasses the BGC-Argo climatology in predicting pH, dissolved inorganic
carbon, alkalinity, oxygen, nitrate, and phosphate in the mesopelagic and
the mixed layers as well as silicate in the mesopelagic layer. However,
there are still areas for improvement with respect to reducing the model–data misfit for
certain variables such as silicate, pH, and the partial pressure of CO<inline-formula><mml:math id="M3" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
in the mixed layer as well as chlorophyll-<inline-formula><mml:math id="M4" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>-related, oxygen-minimum-zone-related, and particulate-organic-carbon-related metrics. The method proposed
here can also aid in refining the design of the BGC-Argo network, in
particular regarding the regions in which BGC-Argo observations should be enhanced to
improve the model accuracy via the assimilation of BGC-Argo data or
process-oriented assessment studies. We strongly recommend increasing the
number of observations in the Arctic region while maintaining the existing
high-density of observations in the Southern Oceans. The model error in
these regions is only slightly less than the variability observed in
BGC-Argo measurements. Our study illustrates how the synergic use of
modeling and BGC-Argo data can both provide information about the performance of models
and improve the design of observing systems.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Horizon 2020</funding-source>
<award-id>862626</award-id>
</award-group>
<award-group id="gs2">
<funding-source>Agence Nationale de la Recherche</funding-source>
<award-id>ANR J11R107-F</award-id>
</award-group>
<award-group id="gs3">
<funding-source>European Research Council</funding-source>
<award-id>246777</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<?pagebreak page1406?><sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e251">Since preindustrial times, the ocean has taken up <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">26</mml:mn></mml:mrow></mml:math></inline-formula> % of total anthropogenic CO<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> emissions
(Friedlingstein
et al., 2022), leading to dramatic change in the ocean's biogeochemical (BGC)
cycles, such as ocean acidification (Iida et al., 2020). Moreover,
deoxygenation
(Breitburg
et al., 2018) and change in the biological carbon pump are now manifesting
globally (Capuzzo et al., 2018;
Osman et al., 2019; Roxy et al., 2016). Therefore, along with plastic pollution
(Eriksen et al., 2014) and an increase in fisheries
pressure (Crowder et al., 2008), major changes are occurring in marine ecosystems at the global scale. In order to
contextualize the monitoring of ongoing changes, derive climate projections, and
develop better mitigation strategies, realistic numerical simulations of the
oceans' BGC state are required.</p>
      <p id="d1e273">Numerical models of ocean biogeochemistry represent a prime tool to address
these issues because they produce three-dimensional estimates of a large
number of chemical and biological variables that are dynamically consistent
with the ocean circulation (Fennel et al., 2019). They
can assess past and current states of the BGC ocean and produce short-term to
seasonal forecasts as well as climate projections. However, these models are
far from being flawless, mostly because there are still huge knowledge gaps
in the understanding of key BGC processes and, as a result, the mathematical
functions that describe BGC fluxes, and the ecosystem dynamics are too
simplistic (Schartau et al., 2017). For instance, most
models do not include a radiative component for the penetration of solar
radiation in the ocean. Nevertheless, it has been shown that coupling such a
component with a BGC model improves the representation of the dynamics of
phytoplankton in the lower euphotic zone
(Dutkiewicz et al., 2015; Álvarez et al.,
2022). Additionally, the parameterization of the mathematical functions
generally results from laboratory experiments on a few representative
species and may not be suitable for extrapolation to ocean simulations that
need to represent the large range of organisms present in oceanic ecosystems
(Schartau et al., 2017; Ward et al.,
2010). Furthermore, the assimilation of physical data in coupled
physical–BGC models that improve the physical ocean state can paradoxically
degrade the simulation of the BGC state of the ocean
(Fennel et al., 2019; Park et
al., 2018; Gasparin et al., 2021). Thus, a rigorous assessment of BGC models is essential to test their predictive skills, examine their ability to reproduce
BGC processes, and estimate confidence intervals on model predictions
(Doney et al., 2009; Stow
et al., 2009).</p>
      <p id="d1e276">However, the evaluation of BGC models is limited by the availability of
data. It relies principally on a combination of different data sets from
satellite observations (such as the chlorophyll <inline-formula><mml:math id="M7" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentration), cruise observations,
and permanent oceanic stations from large databases such as the World Ocean
Database
(e.g.,
Doney et al., 2009; Dutkiewicz et al., 2015; Lazzari et al., 2012, 2016;
Lynch et al., 2009; Séférian et al., 2013; Stow et al., 2009). All of
these data sets do not have a sufficient vertical/temporal resolution
nor a synoptic view, and they do not provide all of the variables necessary to evaluate how
models represent climate-relevant processes such as air–sea CO<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
fluxes, the biological carbon pump, ocean acidification, or deoxygenation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e298">Spatial and temporal coverage of BGC-Argo quality-controlled pH,
nitrate, chlorophyll <inline-formula><mml:math id="M9" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, oxygen, and <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> profiles: <bold>(a)</bold> the number of
quality-controlled profiles for the entire period per 4<inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> bin; <bold>(b)</bold> the number of quality-controlled profiles per year. Note
that this study only uses data from 2009 to 2020 to evaluate model
performance.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/1405/2023/bg-20-1405-2023-f01.png"/>

      </fig>

      <p id="d1e349">In 2016, the Biogeochemical-Argo (BGC-Argo) program was launched with the
goal of operating a global array of 1000 BGC-Argo floats equipped with sensors measuring the following parameters: oxygen
(O<inline-formula><mml:math id="M12" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>), chlorophyll <inline-formula><mml:math id="M13" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (Chl <inline-formula><mml:math id="M14" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>), and nitrate (NO<inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> concentrations;
particulate backscattering (<inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>); pH; and downwelling irradiance
(Biogeochemical-Argo
Planning Group, 2016; Claustre et al., 2020). Although the planned number of
1000 floats has not been reached yet, the BGC-Argo program has already
provided a large number of quality-controlled vertical profiles of O<inline-formula><mml:math id="M17" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>,
Chl <inline-formula><mml:math id="M18" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, NO<inline-formula><mml:math id="M19" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and pH (Fig. 1). With respect to O<inline-formula><mml:math id="M21" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, Chl <inline-formula><mml:math id="M22" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>,
NO<inline-formula><mml:math id="M23" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, and <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, the North Atlantic and the Southern Oceans are
reasonably well sampled, whereas pH is only well sampled in the Southern
Oceans. At the regional scale, the Mediterranean Sea is also fairly well
sampled by BGC-Argo floats
(Salon
et al., 2019; Terzić et al., 2019; D'Ortenzio et al., 2020); however,
there are still large undersampled areas like the Arctic Ocean, subtropical
gyres, and the subpolar North Pacific. Thanks to machine-learning-based
methods (Bittig et al., 2018; Sauzède et al.,
2017), floats equipped with O<inline-formula><mml:math id="M25" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> sensors can be additionally used to
derive vertical profiles of NO<inline-formula><mml:math id="M26" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, phosphate (PO<inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, silicate (Si),
alkalinity (Alk), dissolved inorganic carbon (DIC), pH, and the partial pressure of CO<inline-formula><mml:math id="M28" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math id="M29" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M30" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>).</p>
      <p id="d1e528">The BGC-Argo data set represents a significant improvement for the
assessment of models compared with large databases such as the World Ocean
Database (Boyer et al., 2013) or the Copernicus Marine
Service in situ data set (European Union-Copernicus Marine
Service, 2015). Large databases are composed of data collected using various
instrument types and heterogenous data sampling methodologies. Therefore,
for a given variable, the accuracy numbers are not the same and change
depending on the instrument type (European Union-Copernicus
Marine Service, 2019). Consequently, the changing proportion of instrument types over the years affects the overall accuracy over
time. On
the other hand, the BGC-Argo data set is a homogenous data set with strict
and uniform sampling methodologies and data quality control (QC) procedures.
As a result, the BGC-Argo data set has a satisfactory level of accuracy that
remains stable over time (Johnson et
al., 2017; Mignot et al., 2019). Moreover, the number of quality-controlled
observations collected every year by the BGC-Argo fleet is now greater than
any other data set (Claustre et
al., 2020). Using the BGC-Argo data set as the single evaluation data set is,
therefore, a way to ensure consistent accuracy.</p>
      <p id="d1e531">The BGC-Argo floats provide multivariate observations at high vertical and
temporal resolutions and for long periods of time, producing nearly
continuous time series of the<?pagebreak page1407?> vertical distribution of several
biogeochemical variables. This is not possible with the discrete, univariate
vertical sampling provided by cruise cast in situ measurements or with
climatological values derived from the World Ocean Atlas. All of these
specificities overcome the limitations of previous data sets, especially with
respect to their univariate nature as well as their limited vertical and
temporal resolutions. This opens new perspectives for the evaluation of BGC
models
(Gutknecht
et al., 2019; Salon et al., 2019; Terzić et al., 2019).</p>
      <p id="d1e534">The development of BGC models, coupled with the ongoing increase in spatial
and vertical resolutions, has resulted in a significant rise in the volume
of model output. Simplification techniques are therefore required to
provide decipherable information on the model predictive skill. Allen et al. (2007) proposed a methodology to reduce the spatial
dimensions in model assessment exercises, thereby providing concise
information about the model performance. They used an unsupervised learning
algorithm to classify the southern North Sea into five coherent BGC regions
based on modeled time series of temperature and NO<inline-formula><mml:math id="M31" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and Si
concentrations. They then evaluated the predictive capability of the
model in each BGC region (instead of each grid point), thereby greatly reducing
the number of points to be validated. An additional method to reduce the
dimensions of model–data comparison is the use of assessment metrics
(Hipsey et al., 2020; Russell et al., 2018). In
particular, metrics such as depth-averaged state variables (e.g., mixed-layer-averaged Chl <inline-formula><mml:math id="M33" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, NO<inline-formula><mml:math id="M34" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, and O<inline-formula><mml:math id="M35" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>), mass fluxes and
process rates (e.g., primary production or division rates), or emergent
properties (e.g., the deep chlorophyll maximum, DCM, or oxygen minimum zone,
OMZ) are particularly useful to reduce the number of model vertical
layers to be compared with the observations.</p>
      <?pagebreak page1408?><p id="d1e582">The objective of the present study is twofold. First, we aim to propose
a methodology that uses the BGC-Argo data set, an unsupervised learning
algorithm, and assessment metrics to simplify marine BGC model–data
comparisons and, thus, provides information (in a concise way) about model performance.
Second, we aim to use this methodology to identify ocean
regions where the model–observation misfit is larger than the variability
in the BGC-Argo data and, thus, provide information on regions that should be better sampled by the BGC-Argo observing system. The first step of the method consists
of defining 23 assessment metrics that are used both to construct the BGC
regions and, subsequently, to compare the model output with the BGC-Argo data. In the
second step, following the approach of Allen et al. (2007),
we use an unsupervised learning algorithm, specifically a <inline-formula><mml:math id="M36" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering
technique, to classify the global ocean into eight coherent BGC regions based on
the climatological modeled time series of the 23 assessments metrics. In
the last step, the skill of the model with respect to predicting the assessment metrics
is evaluated in each BGC region using the model efficiency statistical
score. Unlike other statistical metrics such as the correlation coefficient, the bias, or the root-mean-square (RMS) difference, which do not objectively quantify whether the model performance is acceptable or not, the model efficiency calculates whether the model outperforms an observational climatology. Finally, the method
is implemented using the global ocean BGC analysis and forecasting system of
the Copernicus Marine Service (European Union-Copernicus
Marine Service, 2019).</p>
      <p id="d1e593">The rest of the paper is organized as follows: Sect. 2 presents the data sets used in
this work; Sect. 3 defines the assessment metrics and details the
<inline-formula><mml:math id="M37" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means algorithm as well as the model efficiency statistical score;
Sect. 4 presents and discusses the results; and, finally, Sect. 5 concludes
the study.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Data</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>BGC-Argo float observations</title>
      <p id="d1e618">The float data were downloaded from the Argo CORIOLIS Global Data Assembly
Center in France (<uri>ftp://ftp.ifremer.fr/argo</uri>, last access: January 2023). The conductivity–temperature–depth (CTD) and trajectory data were quality controlled using the
standard Argo protocol (Wong et al., 2015). The raw BGC signals
were transformed to biogeochemical variables (i.e., O<inline-formula><mml:math id="M38" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, Chl <inline-formula><mml:math id="M39" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, NO<inline-formula><mml:math id="M40" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>,
<inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and pH) and quality controlled according to international BGC-Argo
protocols
(Johnson
et al., 2018a, b; Schmechtig et al., 2015, 2018; Thierry et al., 2018;
Thierry and Bittig, 2018).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e663">Data mode and QC flags of the BGC-Argo observations used in this
study. In the Argo data system, the data are available in three data modes:
“real time”, “adjusted”, and “delayed”. See Sect. 2.1 for a brief
description of each data mode. The flags “3” and “4” refer to
“potentially bad data” and “bad data”, respectively. The reader is referred to Bittig et
al. (2019) for a more detailed description of the Argo data modes
and flags.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="90pt"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="90pt"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="210pt"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Parameter</oasis:entry>
         <oasis:entry colname="col2">Data mode</oasis:entry>
         <oasis:entry colname="col3">Data mode of associated <?xmltex \hack{\hfill\break}?>pressure, temperature, <?xmltex \hack{\hfill\break}?>and salinity profiles</oasis:entry>
         <oasis:entry colname="col4">QC flags</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Chl <inline-formula><mml:math id="M42" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Adjusted and <?xmltex \hack{\hfill\break}?>delayed</oasis:entry>
         <oasis:entry colname="col3">Real time, adjusted, <?xmltex \hack{\hfill\break}?>and delayed</oasis:entry>
         <oasis:entry colname="col4">Real time (<inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>,</mml:mo><mml:mi>T</mml:mi><mml:mo>,</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula>): all flags except 4 <?xmltex \hack{\hfill\break}?>Adjusted or delayed: all flags except 3 and 4</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">O<inline-formula><mml:math id="M44" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Delayed</oasis:entry>
         <oasis:entry colname="col3">Delayed</oasis:entry>
         <oasis:entry colname="col4">All flags except 3 and 4</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">NO<inline-formula><mml:math id="M45" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Adjusted and <?xmltex \hack{\hfill\break}?>delayed</oasis:entry>
         <oasis:entry colname="col3">Real time, adjusted, <?xmltex \hack{\hfill\break}?>and delayed</oasis:entry>
         <oasis:entry colname="col4">Real time (<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>,</mml:mo><mml:mi>T</mml:mi><mml:mo>,</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula>): all flags except 4 <?xmltex \hack{\hfill\break}?>Adjusted or delayed: all flags except 3 and 4</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">pH</oasis:entry>
         <oasis:entry colname="col2">Adjusted and <?xmltex \hack{\hfill\break}?>delayed</oasis:entry>
         <oasis:entry colname="col3">Real time, adjusted, <?xmltex \hack{\hfill\break}?>and delayed</oasis:entry>
         <oasis:entry colname="col4">Real time (<inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>,</mml:mo><mml:mi>T</mml:mi><mml:mo>,</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula>): all flags except 4 <?xmltex \hack{\hfill\break}?>Adjusted or delayed: all flags except 3 and 4</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Real time, adjusted, <?xmltex \hack{\hfill\break}?>and delayed</oasis:entry>
         <oasis:entry colname="col3">Real time, adjusted, <?xmltex \hack{\hfill\break}?>and delayed</oasis:entry>
         <oasis:entry colname="col4">Real time (<inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:mi>P</mml:mi><mml:mo>,</mml:mo><mml:mi>T</mml:mi><mml:mo>,</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula>): all flags except 4 <?xmltex \hack{\hfill\break}?>Adjusted or delayed (<inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:mi>P</mml:mi><mml:mo>,</mml:mo><mml:mi>T</mml:mi><mml:mo>,</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula>): all flags except 3 and 4</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d1e666">“(P,T,S)” refers to pressure, temperature, and salinity.</p></table-wrap-foot><?xmltex \gdef\@currentlabel{1}?></table-wrap>

      <p id="d1e932">In the Argo data system, the data are available in three data modes:
“real time”, “adjusted”, and “delayed” (Bittig et al.,
2019). In the real-time mode, the raw data are converted into state
variables, and an automatic quality control is applied to “flag” gross
outliers. In the adjusted mode, the real-time data receive a
calibration adjustment in an automated manner. In the delayed mode, the
adjusted data are adjusted and validated by a scientific expert. While
the real-time and adjusted data are considered acceptable for
operational application (data assimilation), the delayed-mode data are
designed for scientific exploitation and represent the highest-quality
data with the ultimate goal (when time series with sufficient duration
have been acquired) of possibly extracting climate-related trends
(Bojinski et al., 2014). However, for some variables, only a
limited fraction of the data is accessible in the delayed mode. Consequently,
for each variable, we selected the highest-level data mode, in which at
least 80 % of the data are available (see Table 1). Note that this criterion is not applied to <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, as only delayed-mode data were
selected for this variable in order to generate the pseudo-observations from the CANYON-B neural
network (more detail given in the following). We removed data with missing location or time
information and data flagged as “bad data” (flag <inline-formula><mml:math id="M52" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 4). Depending on the
parameter and the associated data mode, we also excluded data flagged as
“potentially bad data” (flag <inline-formula><mml:math id="M53" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3) (see Table 1). Finally, it should be
noted that the status of the different modes of adjustment for <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is
still very inhomogeneous in the global BGC-Argo database. A quality control
procedure in real time has just been proposed to the Argo Data
Management Team but is not yet operationally implemented in the database
(Dall'Olmo et al., 2022). As there is no current official consensus regarding
the qualification of <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> data, we decided to use all data
modes for this study.</p>
      <?pagebreak page1409?><p id="d1e983">Particulate organic carbon (POC) concentrations were derived from <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
observations. First, three consecutive low-pass filters were applied on the
vertical profiles of <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> to remove spikes (Briggs et
al., 2011): a two-point running median followed by a five-point running minimum
and a five-point running maximum. The filtered <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> profiles were then
converted into POC (mgC m<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> using a simplified version of the
empirical POC / <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> algorithm developed by Gali et al. (2022), i.e., for
depths larger than the mixed-layer depth (MLD):
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M61" display="block"><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mtext>POC</mml:mtext><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi>c</mml:mi><mml:mo>+</mml:mo><mml:mi>a</mml:mi><mml:mo>⋅</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.001</mml:mn><mml:mo>⋅</mml:mo><mml:mi>b</mml:mi><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mtext>MLD</mml:mtext><mml:mo>)</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mi>z</mml:mi><mml:mo>&gt;</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>MLD</mml:mtext><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          where <inline-formula><mml:math id="M62" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> is a constant deep value and <inline-formula><mml:math id="M63" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> is the slope of the exponential
decrease; the aforementioned variables are set to 12 010 mgC m<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m and <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6.57</mml:mn></mml:mrow></mml:math></inline-formula>, respectively, as proposed
by Gali et al. (2022). The global
coefficient <inline-formula><mml:math id="M66" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> is set to 37 990 mgC m<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m to be consistent with a
relationship, developed for global applications (i.e., POC <inline-formula><mml:math id="M68" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 38 <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mn mathvariant="normal">687.27</mml:mn><mml:mo>⋅</mml:mo><mml:msubsup><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext><mml:mn mathvariant="normal">0.95</mml:mn></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (European Union-Copernicus Marine Service,
2020). In the mixed layer (ML), <inline-formula><mml:math id="M70" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> is fixed at <inline-formula><mml:math id="M71" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M72" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> MLD, and Eq. (1)
simplifies to
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M73" display="block"><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mtext>POC</mml:mtext><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi>c</mml:mi><mml:mo>+</mml:mo><mml:mi>a</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mi>z</mml:mi><mml:mo>≤</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mtext>MLD</mml:mtext><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          Finally, we complemented the existing BGC-Argo data set with
pseudo-observations of NO<inline-formula><mml:math id="M74" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Si, Alk, and DIC concentrations as
well as pH and <inline-formula><mml:math id="M76" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M77" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> using the CANYON-B neural network (Bittig et
al., 2018). CANYON-B estimates vertical profiles of nutrients; the
carbonate system variables from concomitant measurements of float pressure,
temperature, salinity, and <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> qualified in delayed mode; and
the associated geolocalization and date of sampling information. CANYON-B was trained
and validated using version 2 of the Global Ocean Data Analysis Project (GLODAPv2) data set (Olsen et al., 2016).
The CANYON-B estimates of NO<inline-formula><mml:math id="M79" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and pH were merged with measured values
based on the rationale that CANYON-B estimates have RMS errors (NO<inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.7</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and pH <inline-formula><mml:math id="M83" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.013) (Bittig et al., 2018) that
are of the same order of magnitude as those of the BGC-Argo observation
errors (NO<inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and pH <inline-formula><mml:math id="M87" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.07)
(Mignot et al., 2019; Johnson et al.,
2017).</p>
      <p id="d1e1404">Finally, we verified that the RMS errors in BGC-Argo data (both measured and
from CANYON-B estimates) are lower than the RMS difference between the model
and BGC-Argo data; therefore, the comparison of simulated properties with the
BGC-Argo data leads to a meaningful evaluation of the model performance. We
believe it is reasonable to draw conclusions on the model uncertainty from
BGC-Argo data as long as the BGC-Argo errors are much lower than the
model–observation RMS difference.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>The Global Ocean Biogeochemistry Analysis and Forecast system of the Copernicus Marine
Service</title>
      <p id="d1e1415">The global model simulation used in this study (see Appendix A1) originates
from the global ocean hydrodynamic–biogeochemical coupled system, based on the
NEMO–PISCES (Nucleus for European Modelling of the Ocean–Pelagic Interaction Scheme for Carbon and Ecosystem Studies) model, implemented and operated by Mercator Ocean for the Copernicus Marine
Service within the framework of the European Union's Earth observation program (European Union-Copernicus Marine Service,
2019). The BGC component is constrained by the assimilation of satellite
Chl <inline-formula><mml:math id="M88" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> concentrations, and a climatological damping is applied to nitrate,
phosphate, oxygen, and silicate with the World Ocean Atlas 2013, to dissolved
inorganic carbon and alkalinity with the GLODAPv2 climatology
(Lauvset et al., 2016), and to dissolved organic carbon and iron
with a 4000-year PISCES climatological run. The BGC model is forced in
offline mode by daily averages of ocean physics, sea ice, and atmospheric
conditions. The ocean physics and sea-ice forcing come from the global ocean
physics analysis and forecasting system at <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">12</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> (Lellouche et al., 2018); the aforementioned system assimilates
along-track altimeter data, satellite sea surface temperature and sea-ice
concentration, and in situ temperature and salinity vertical profiles. The BGC
model has a <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> horizontal resolution with 50 vertical levels (22 levels in the upper 100 m, and the vertical resolution decreases from 1 m near the
surface to 450 m near the ocean bottom.</p>
      <p id="d1e1457">We used the daily output of Chl <inline-formula><mml:math id="M91" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, NO<inline-formula><mml:math id="M92" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, PO<inline-formula><mml:math id="M93" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, Si, O<inline-formula><mml:math id="M94" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, pH, DIC,
Alk, and <inline-formula><mml:math id="M95" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M96" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> as well as the weekly output of two size classes of phytoplankton, the small
detrital particles and microzooplankton (resampled offline from a weekly to
daily frequency via constant interpolation) from 2009 to 2020. Note that
the method of linear resampling, which artificially increases the number of
data, could potentially bias the statistical results, especially in regions
with poor data coverage. As suggested by Gali et al. (2022), the POC
concentration was computed offline by adding the two size classes
of<?pagebreak page1410?> phytoplankton (the small detrital particles and microzooplankton modeled
by PISCES) together. This particular combination of phytoplanktonic and
non-phytoplanktonic organisms has been shown to match the small POC observed
by the floats. The partial pressures of CO<inline-formula><mml:math id="M97" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> values were extrapolated in
the mixed layer from the surface value estimated by the model. The Black Sea
was not considered in the present analysis because the model solutions are
of poor quality. Finally, the daily model output was co-located in time
and space closest to the BGC-Argo float positions and was
interpolated to the sampling depth of the float observations. The
characteristics of the model are further detailed in the Appendix.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e1523">The metrics used to assess the model simulation with
BGC-Argo data. For each metric, the level of assessment, as described in
Hipsey et al. (2020), is also indicated.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="89pt"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Process</oasis:entry>
         <oasis:entry colname="col2">Metric</oasis:entry>
         <oasis:entry colname="col3">Definition</oasis:entry>
         <oasis:entry colname="col4">Units</oasis:entry>
         <oasis:entry colname="col5">Assessment level</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Carbonate chemistry</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M98" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M99" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged <inline-formula><mml:math id="M100" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M101" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M102" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>atm</oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">DIC<inline-formula><mml:math id="M103" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged DIC in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M104" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M105" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Alk<inline-formula><mml:math id="M106" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged Alk in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M107" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">DIC<inline-formula><mml:math id="M109" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged DIC in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M110" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Alk<inline-formula><mml:math id="M112" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged Alk in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M113" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M114" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">pH<inline-formula><mml:math id="M115" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged pH in the mixed layer</oasis:entry>
         <oasis:entry colname="col4">Total</oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">pH<inline-formula><mml:math id="M116" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged pH in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4">Total</oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Biological carbon pump</oasis:entry>
         <oasis:entry colname="col2">Chl<inline-formula><mml:math id="M117" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged Chl <inline-formula><mml:math id="M118" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> in the mixed layer</oasis:entry>
         <oasis:entry colname="col4">mg m<inline-formula><mml:math id="M119" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">NO<inline-formula><mml:math id="M120" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged NO<inline-formula><mml:math id="M121" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M122" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">PO<inline-formula><mml:math id="M124" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged PO<inline-formula><mml:math id="M125" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Si<inline-formula><mml:math id="M128" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged Si in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M129" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M130" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">NO<inline-formula><mml:math id="M131" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged NO<inline-formula><mml:math id="M132" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M133" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">PO<inline-formula><mml:math id="M135" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged PO<inline-formula><mml:math id="M136" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M137" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M138" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Si<inline-formula><mml:math id="M139" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged Si in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M140" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M141" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">POC<inline-formula><mml:math id="M142" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged POC in the mixed layer</oasis:entry>
         <oasis:entry colname="col4">mg m<inline-formula><mml:math id="M143" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">POC<inline-formula><mml:math id="M144" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged POC in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4">mg m<inline-formula><mml:math id="M145" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Chl<inline-formula><mml:math id="M146" display="inline"><mml:msub><mml:mi/><mml:mtext>DCM</mml:mtext></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Magnitude of DCM</oasis:entry>
         <oasis:entry colname="col4">mg m<inline-formula><mml:math id="M147" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Emergent property</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>DCM</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth of DCM</oasis:entry>
         <oasis:entry colname="col4">m</oasis:entry>
         <oasis:entry colname="col5">Emergent property</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>nit</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth of nitracline</oasis:entry>
         <oasis:entry colname="col4">m</oasis:entry>
         <oasis:entry colname="col5">Emergent property</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Oxygen levels</oasis:entry>
         <oasis:entry colname="col2">O<inline-formula><mml:math id="M150" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged O<inline-formula><mml:math id="M151" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M152" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M153" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">O<inline-formula><mml:math id="M154" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth-averaged O<inline-formula><mml:math id="M155" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the mesopelagic layer</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M156" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M157" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">State variable</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">O<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Value of O<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> minimum</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M160" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M161" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">Emergent property</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Depth of O<inline-formula><mml:math id="M163" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> minimum</oasis:entry>
         <oasis:entry colname="col4">m</oasis:entry>
         <oasis:entry colname="col5">Emergent property</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{2}?></table-wrap>

</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Methods</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Assessment metrics</title>
      <p id="d1e2590">In this section, we present the 23 metrics used for the clustering of the ocean
and for the assessment of the model simulation with BGC-Argo data. The
metrics are associated with the carbonate chemistry, the biological carbon
pump, and oxygen levels. Most of the metrics evaluate the model state
accuracy via the comparison of simulated state variables with BGC-Argo
observations that are depth averaged in the mixed (hereinafter indicated with the
subscript “mixed”) and mesopelagic (hereinafter indicated with the subscript
“meso”) layers. This two-layer comparison between model and BGC-Argo data
provides an indirect evaluation of the key processes and fluxes associated
with the carbonate chemistry, biological carbon pump, and oxygen levels in
the mixed and mesopelagic layers. In addition, some of the metrics assess
the skill of the model with respect to capturing emergent properties, such as the
nitracline depths, DCMs, and OMZs. The metrics are described below and
summarized in Table 2. The definition of the metrics is the same for the
model and the BGC-Argo data. The MLD is computed, following De Boyer et al. (2004), as the depth at which the change in potential density (from its value
at 10 m) exceeds 0.03 kg m<inline-formula><mml:math id="M164" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Dall'Olmo and Mork (2014) define the
mesopelagic layer as the region between the deeper of either the euphotic
layer depth or the MLD and a depth of 1000 m. However, for ease of
use, we adopt a simplified definition that considers the mesopelagic layer
to be the region between the MLD and a depth of 1000 m. To ensure the
accuracy of the metrics' calculation, we have checked the representation of
the MLDs in the model. The model's MLDs closely match the observed data, as
indicated by an overall mean-square difference of approximately 30 % of
the total variance in the observations.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Carbonate chemistry</title>
      <p id="d1e2613">The uptake of <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">26</mml:mn></mml:mrow></mml:math></inline-formula> % of anthropogenic CO<inline-formula><mml:math id="M166" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> by the global
ocean
(Friedlingstein
et al., 2022) has altered the oceanic carbonate chemistry over the past few
decades (Iida et al., 2020). Therefore, assessing how models correctly
represent the oceanic carbonate chemistry is critical if we aim to
derive accurate climate projections of future change. The classical
variables for the study of carbonate chemistry are DIC, Alk, pH, and
<inline-formula><mml:math id="M167" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M168" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (Williams and Follows, 2011). These variables are
assessed in the mixed (DIC<inline-formula><mml:math id="M169" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, Alk<inline-formula><mml:math id="M170" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, pH<inline-formula><mml:math id="M171" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, and
<inline-formula><mml:math id="M172" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and mesopelagic (DIC<inline-formula><mml:math id="M174" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula>, Alk<inline-formula><mml:math id="M175" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula>, and pH<inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
layers. The partial pressure of CO<inline-formula><mml:math id="M177" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> is only assessed in the mixed layer,
as the evaluation of <inline-formula><mml:math id="M178" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M179" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> plays a critical role in the assessment of BGC models' skill to correctly represent the air–sea CO<inline-formula><mml:math id="M180" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> flux.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Biological carbon pump</title>
      <p id="d1e2779">The biological carbon pump is the transformation of nutrients and dissolved
inorganic carbon into organic carbon in the upper part of the ocean via
phytoplankton photosynthesis and the subsequent transfer of this organic
material into the deep ocean. The functioning of this pump relies on key
pools of nutrients and carbon as well as several processes that control mass
fluxes between the pools. Changes in the biological carbon pump are now
manifesting globally (Capuzzo et
al., 2018; Osman et al., 2019; Roxy et al., 2016).</p>
      <p id="d1e2782">One way to indirectly evaluate a model's ability to accurately capture
essential processes related to the biological carbon pump in the ocean's
upper layer, such as primary production, respiration, and grazing, is to
compare various ML pools (here the nutrients (NO<inline-formula><mml:math id="M181" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>, PO<inline-formula><mml:math id="M182" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>, and
Si<inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, Chl<inline-formula><mml:math id="M184" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, and POC<inline-formula><mml:math id="M185" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>) with BGC-Argo observations.
Similarly, the assessment of the mesopelagic nutrients and POC
concentration (hereinafter denoted NO<inline-formula><mml:math id="M186" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>, PO<inline-formula><mml:math id="M187" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>, Si<inline-formula><mml:math id="M188" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula>, and
POC<inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> provides an indirect evaluation of the key mesopelagic layer
processes, such as export production and respiration.</p>
      <p id="d1e2889">In stratified systems, a DCM is formed at the base of the euphotic layer
(Barbieux
et al., 2019; Cullen, 2015; Letelier et al., 2004; Mignot et al., 2014,
2011). It has been suggested that the DCM plays a key role in the synthesis
of organic carbon by phytoplankton (Macías et al., 2014). Therefore, DCMs
are key features to be assessed in BGC models with respect to
processes involved in the biological carbon pump, such as primary
production. However, the DCM layer generally escapes detection by remote
sensing. Furthermore, the DCM is also an emergent feature that develops in
response to complex physical and biogeochemical interactions
(Cullen, 2015). Thus, its evaluation provides critical information
regarding the accuracy of the model with respect to capturing complex patterns of key
ecosystem processes. The depth and magnitude of the DCM (<inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>DCM</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and
Chl<inline-formula><mml:math id="M191" display="inline"><mml:msub><mml:mi/><mml:mtext>DCM</mml:mtext></mml:msub></mml:math></inline-formula>, respectively) are helpful metrics for the assessment of DCM dynamics. The
depth of the DCM is calculated as the depth where the Chl <inline-formula><mml:math id="M192" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> maximum occurs
in the profile, with the criterion that the <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>DCM</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> should be deeper than the
MLD. The magnitude of the DCM corresponds to the Chl <inline-formula><mml:math id="M194" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> value at the <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>DCM</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e2949"><inline-formula><mml:math id="M196" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is often depleted in the surface layers and is a limiting factor for
phytoplankton growth in most oceanic regions. The vertical supply of
NO<inline-formula><mml:math id="M197" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> to the surface layers depends, among other factors, on the vertical
gradient of <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (the nitracline)<?pagebreak page1411?> and, in particular, on its depth (the
nitracline depth) (Cermeno et al., 2008; Omand
and Mahadevan, 2015). Therefore, the comparison of the simulated nitracline
depth (<inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>nit</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with BGC-Argo observations allows for an indirect
assessment of the model performance with respect to reproducing vertical fluxes of <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.
Following previous studies
(Cermeno et al., 2008; Lavigne et
al., 2013; Richardson and Bendtsen, 2019), the depth of the nitracline is
identified as the first depth where <inline-formula><mml:math id="M201" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is detected. A detection threshold
of 1 <inline-formula><mml:math id="M202" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M203" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is used, which is an upper estimate of the
accuracy of BGC-Argo <inline-formula><mml:math id="M204" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> data (Johnson et
al., 2017; Mignot et al., 2019).</p>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Oxygen levels</title>
      <p id="d1e3057">Oxygen levels in the global and coastal waters have declined over the whole
water column over the past decades (Schmidtko et al., 2017), and
OMZs are expanding (Stramma et al., 2008). Therefore, assessing how
models correctly represent ocean oxygen levels as well as the OMZs is critical to monitor their change over time. Similar to the
assessment of DCMs, evaluating oxygen minimum zones (OMZs) provides insight
into how the model represents emergent dynamics resulting from intricate
physical and biogeochemical interactions (Paulmier and Ruiz-Pino,
2009). Oxygen levels are evaluated in the mixed (O<inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and
mesopelagic (O<inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> layers. OMZs are defined as oceanic regions where
O<inline-formula><mml:math id="M207" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> levels are lower than 20 <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol kg<inline-formula><mml:math id="M209" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Paulmier
and Ruiz-Pino, 2009). OMZs are characterized by their depths (<inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
and their concentrations (O<inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>Bioregionalization of the global ocean</title>
      <p id="d1e3164">In this study, we use the <inline-formula><mml:math id="M212" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering algorithm
(Hartigan and Wong, 1979) to regionalize the ocean based on
the modeled climatological monthly time series of the 23 metrics described
previously. The <inline-formula><mml:math id="M213" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering algorithm is an unsupervised machine
learning technique that groups similar objects together in a way that
maximizes similarity between objects within a group and minimizes similarity
between objects in different groups. This clustering tool has been
successfully used to classify marine BGC regions in different oceanic basins
based on the seasonal cycle of satellite chlorophyll
(Kheireddine
et al., 2021; Mayot et al., 2016; Lacour et al., 2015; D'Ortenzio and
d'Alcala, 2009). The step-by-step methodology used in this study is
described in the following.</p>
      <p id="d1e3181">The first step in the analysis involved computing monthly climatological
time series for the 23 metrics at each model grid cell. These time series
were derived from the monthly<?pagebreak page1412?> climatological time series of state variables
predicted by the model from 2009 to 2020. To account for the lognormal
distribution and the wide range of values for metrics in units of Chl <inline-formula><mml:math id="M214" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>  or
POC, a log-10 transformation was applied to these metrics. Second, to take the 6-month shift in seasons between the Northern and
Southern hemispheres into consideration, the dates for grid cells located in the Southern
Hemisphere were shifted by 6 months (Bock et al., 2022).
Third, to classify model grid cells based on the seasonality and amplitude
of the 23 metrics, each metric was standardized by subtracting the global
mean and dividing by the global standard deviation. This ensured that each
metric had a mean of 0 and a standard deviation of 1, enabling comparison
across metrics with different units. Fourth, to reduce the dimensionality of
the data set, a principal component analysis was applied to the scaled data.
Only the components that explain 99 % of the variance in the data set
were kept, thereby reducing the dimensions of the data set by 85 %. A
<inline-formula><mml:math id="M215" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering analysis was then performed on the resulting data set.
Following Kheireddine et al. (2021), the number of
clusters was determined based on a silhouette analysis
(Rousseeuw, 1987), which yielded a value of eight for the number
of clusters.</p>
</sec>
<sec id="Ch1.S3.SS6">
  <label>3.6</label><title>Model efficiency</title>
      <p id="d1e3206">To quantify the model predictive skill, a model efficiency statistical score
(<inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was computed for each metric and in each BGC region:
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M217" display="block"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>o</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>o</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>o</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi>o</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the model and BGC-Argo matched values,
respectively; <inline-formula><mml:math id="M220" display="inline"><mml:mover accent="true"><mml:mi>o</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> is the BGC-Argo climatology; and <inline-formula><mml:math id="M221" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> is the number of
matchups. Assuming that the spatial variations are small in a given
BGC region, <inline-formula><mml:math id="M222" display="inline"><mml:mover accent="true"><mml:mi>o</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> represents the temporal average and
<inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>o</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>o</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> represents the
variance due to temporal fluctuations. The model efficiency tests whether
the model outperforms the BGC-Argo climatology (<inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>;
Fennel et al., 2022) or, stated differently, if the
model–data mean-square difference is lower than the observation variance,
i.e., <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>o</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>&lt;</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi>o</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>o</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. To
ensure the robustness of <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, we verified that the number of matchups
for each metric and in each BGC region was greater than 100; outliers
were then removed using Tukey's fences (Tukey, 1977).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e3494">Spatial distribution of the eight BGC regions obtained with a <inline-formula><mml:math id="M227" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means
clustering method applied to a data set of modeled climatological monthly
time series of the 23 assessment metrics.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/1405/2023/bg-20-1405-2023-f02.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Results and discussion</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>BGC regions of the global ocean</title>
      <p id="d1e3527">The <inline-formula><mml:math id="M228" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering algorithm identified eight distinct BGC regions (Fig. 2). Six of the eight BGC regions correspond to well-defined spatial regions and
are, thus, named accordingly: “Arctic”, “equatorial” (Equ.),
“Mediterranean Sea” (Med. Sea), “OMZs”, “subtropical gyres” (Sub. Gyres), and
“Southern Oceans”. The other two BGC regions, i.e., “low
nutrient bloom” (Low Nut. Bloom) and “high nutrient bloom” (High Nut.
Bloom), are located in the North Atlantic and North Pacific oceans as well
as in the lower latitudes of the Southern Oceans region. These two BGC regions
correspond to ocean basins that experience a phytoplankton bloom in the
springtime (Westberry et al., 2016). The main difference
between these regions is that macronutrients such as nitrate
and phosphate are abundant in one of them throughout the year due to phytoplankton growth
being mainly limited by iron (Williams and Follows, 2011). Finally,
it should be noted that outlier grid cells were not removed from the
analysis; these outliers are mainly present in grid cells close to the
coast. Additionally, grid cells with bathymetry shallower than 1000 m were
not included in the clustering analysis, as metrics associated with
mesopelagic processes cannot be calculated in these shallow grid cells.</p>
      <p id="d1e3537">The BGC regions found in our study are generally coherent with the biomes
estimated in Fay and McKinley (2014)
(hereinafter denoted FM2014). The Arctic and Southern Oceans regions correspond to
the FM2014 ice biome. The Sub. Gyres region corresponds to the FM2014 subtropical
permanently stratified biome. The Equ. BGC region represents a larger
area than the equatorial biome in FM2014. The Low Nut. Bloom and High Nut. Bloom
regions correspond to the FM2014 subtropical seasonally stratified and subpolar
seasonally stratified biomes, respectively. These two BGC regions are
coherent in the North Pacific and the Southern Oceans in both studies.
They differ, however, in the North Atlantic: in FM2014, the subpolar North
Atlantic is divided between the subtropical seasonally stratified and
subpolar seasonally stratified biomes, whereas in our study this area is
only represented by one BGC region – Low Nut. Bloom. Finally, the Med.
Sea and OMZs BGC regions are not represented in FM2014. The main differences
between our study and FM2014 are due to variations in the methodology used
to identify BGC regions. In our study, we used 23 input<?pagebreak page1413?> variables to
identify BGC regions, whereas clustering was based on only one BGC
input variable (Chl <inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and three physical variables (sea surface temperature,
MLD, and sea-ice fraction) in FM2014. Our method allows the identification of specific BGC regions whose main characteristics are determined by variables other than Chl <inline-formula><mml:math id="M230" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, such as the OMZs BGC region. Furthermore, our method includes coastal
areas and identifies the Med. Sea, which is not included in
FM2014 because it is considered a coastal region, as a BGC region.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e3559"><bold>(b)</bold> Bubble plot of the model efficiency statistical score (<inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> as a
function of BGC regions (Arctic, equatorial (Equ.), high nutrient bloom
(High Nut. Bloom), low nutrient bloom (Low Nut. Bloom), Mediterranean Sea
(Med. Sea), oxygen minimum zones (OMZs), Southern Oceans, and subtropical gyres
(Sub. Gyres)) and the assessment metrics associated with the carbonate chemistry
(depth-averaged <inline-formula><mml:math id="M232" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M233" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer (<inline-formula><mml:math id="M234" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
depth-averaged DIC in the mixed layer (DIC<inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged Alk in
the mixed layer (Alk<inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged DIC in the mesopelagic layer
(DIC<inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged Alk in the mesopelagic layer (Alk<inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
depth-averaged pH in the mixed layer (pH<inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and depth-averaged pH
in the mesopelagic layer (pH<inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>). The size of a bubble is
proportional to the value of <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></inline-formula> For a given assessment metric, the
median values of <inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> over all BGC regions are represented as a bar plot in panel <bold>(c)</bold>. Similarly, for a given BGC region, the median values of <inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> across
all assessment metrics are represented as a bar plot in panel <bold>(a)</bold>. In panel <bold>(b)</bold>, the <inline-formula><mml:math id="M245" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M246" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axes are arranged in descending order of the median value of <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> over
all assessment metrics and the median value of <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> over all
BGC regions, respectively. The blue and orange colors correspond to a
positive and negative <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, respectively.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/1405/2023/bg-20-1405-2023-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Model performance</title>
      <p id="d1e3796">Figures 3, 4, and 5 display the model efficiency (<inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) calculated for each assessment
metric and BGC region. To enhance clarity, the <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values are grouped by
process, namely carbonate chemistry, biological carbon pump, and oxygen
levels. The results are presented as bubble plots (Figs. 3b, 4b, 5b), where the size
of the bubble is proportional to the <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value. A bar plot (Figs. 3c, 4c, 5c) shows the
median <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value for a given assessment metric across all BGC regions, while
another bar plot (Figs. 3a, 4a, 5a) shows the median <inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value for a given BGC region
across all assessment metrics. Due to the limited number of assessment
metrics associated with oxygen levels in most regions (i.e., 2), the mean is
used instead of the median. The <inline-formula><mml:math id="M255" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M256" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axes in Figs. 3b, 4b, and 5b are arranged in
descending order based on the median <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value across all assessment metrics (as
shown Figs. 3a, 4a, and 5a) and the median <inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value across all BGC regions (as shown in
Figs. 3b, 4b, and 5b), respectively.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>Carbonate chemistry</title>
      <p id="d1e3899">The model demonstrates improved performance with respect to predicting certain carbonate
chemistry metrics (i.e., Alk<inline-formula><mml:math id="M259" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula>, DIC<inline-formula><mml:math id="M260" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, Alk<inline-formula><mml:math id="M261" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>,
DIC<inline-formula><mml:math id="M262" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula>, and pH<inline-formula><mml:math id="M263" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> compared with the BGC-Argo climatology, as
indicated by median <inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values significantly greater than 0 (Fig. 3b, c).
However, the model's ability to reproduce instantaneous variability in
pH<inline-formula><mml:math id="M265" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula> is more limited, with a <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value close to 0, indicating no
improvement over a simple average of observed values. Furthermore, the model
underperforms the BGC-Argo climatology for <inline-formula><mml:math id="M267" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M268" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> across all
regions. Despite these limitations, the model provides an overall better
estimate of carbonate chemistry dynamics in all BGC regions compared with the
BGC-Argo climatology, as evidenced by Fig. 3a.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e4004">Same as Fig. 3 but for the assessment metrics associated with the
biological carbon pump: depth-averaged Chl <inline-formula><mml:math id="M269" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> in the mixed layer
(Chl<inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged NO<inline-formula><mml:math id="M271" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer (NO<inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged PO<inline-formula><mml:math id="M273" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer (PO<inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
depth-averaged Si in the mixed layer (Si<inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged NO<inline-formula><mml:math id="M276" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>
in the mesopelagic layer (NO<inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged PO<inline-formula><mml:math id="M278" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in the
mesopelagic layer (PO<inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged Si in the mesopelagic
layer (Si<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged POC in the mixed layer (POC<inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
depth-averaged POC in the mesopelagic layer (POC<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, magnitude of the DCM
(Chl<inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>DCM</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth of the DCM (<inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>DCM</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and depth of the nitracline
(<inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>nit</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/1405/2023/bg-20-1405-2023-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>Biological carbon pump</title>
      <p id="d1e4228">The efficiency of the model with respect to estimating the biological carbon pump metrics
varies across both metrics and regions (Fig. 4a, b, c). The model outperforms
the BGC-Argo climatology with respect to estimating PO<inline-formula><mml:math id="M286" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> and NO<inline-formula><mml:math id="M287" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> in the
mesopelagic and mixed layer as well as with respect to estimating Si<inline-formula><mml:math id="M288" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula> and <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>nit</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. However,
the model's ability to predict Si decreases significantly as one moves from
the mesopelagic to the mixed layer. Additionally, the metrics associated
with the first trophic level, such as Chl<inline-formula><mml:math id="M290" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mtext>DCM</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, Chl<inline-formula><mml:math id="M292" display="inline"><mml:msub><mml:mi/><mml:mtext>DCM</mml:mtext></mml:msub></mml:math></inline-formula>, POC<inline-formula><mml:math id="M293" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, and POC<inline-formula><mml:math id="M294" display="inline"><mml:msub><mml:mi/><mml:mtext>meso</mml:mtext></mml:msub></mml:math></inline-formula>, are systematically outperformed by the
BGC-Argo climatology, with median <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values less than 0 in nearly all BGC
regions (Fig. 4b). Regional analysis of the median <inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values (Fig. 4a)
shows that the model performs better than the observational mean (median
<inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values greater than 0) in only a few regions (i.e., High Nut. Bloom, Low Nut. Bloom, Med. Sea, and OMZs), indicating that the model
performs relatively well in these regions but may not be as accurate in the
other regions.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <label>4.5</label><title>Oxygen levels</title>
      <p id="d1e4360">The model provides better estimates of mixed and mesopelagic O<inline-formula><mml:math id="M298" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
concentrations in most BGC regions compared with the BGC-Argo climatology, as
evidenced by consistently positive <inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values in Fig. 5b. However, the
BGC-Argo climatology provides a better representation of the magnitude of
O<inline-formula><mml:math id="M300" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> compared with the model, while the model performs better than the
climatology with respect to predicting <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, although only in the OMZs BGC region.
These results suggest that, while it performs well with respect to estimating mixed
and mesopelagic O<inline-formula><mml:math id="M302" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentrations in most BGC regions, the model does not
accurately capture the depth and magnitude of OMZs.</p>
</sec>
<sec id="Ch1.S4.SS6">
  <label>4.6</label><title>Discussion</title>
      <p id="d1e4431">The model outperforms the BGC-Argo climatology for DIC, Alk, NO<inline-formula><mml:math id="M303" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, and
PO<inline-formula><mml:math id="M304" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in the mesopelagic and mixed layers as well as for Si in the
mesopelagic layer. We attribute this good performance to the effective
application of climatological damping. As described in the Appendix,
climatological damping mitigates the effects of physical data assimilation
in the offline coupled hydrodynamic–biogeochemical system, which can lead to
unrealistic drift of various biogeochemical variables. Specifically, we used
the World Ocean Atlas 2013 (Garcia et al.,
2013, 2014) for NO<inline-formula><mml:math id="M305" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, PO<inline-formula><mml:math id="M306" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, O<inline-formula><mml:math id="M307" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and Si, whereas we utilized GLODAPv2 climatology (Lauvset et
al., 2016) for DIC and Alk. However, our analysis revealed that the model's
performance with respect to estimating Si in the mixed layer is significantly degraded
compared with the mesopelagic layer, indicating the presence of additional
factors affecting the model's ability to accurately estimate this variable.
Further investigation is required to identify these factors and improve the
model's performance with respect to estimating Si in the mixed layer.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e4481">Same as Fig. 3 but for the assessment metrics associated with the
oxygen levels: depth-averaged O<inline-formula><mml:math id="M308" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the mixed layer (O<inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, depth-averaged O<inline-formula><mml:math id="M310" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the mesopelagic layer (O<inline-formula><mml:math id="M311" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">meso</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, value of the O<inline-formula><mml:math id="M312" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> minimum (O<inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and depth of the O<inline-formula><mml:math id="M314" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> minimum (<inline-formula><mml:math id="M315" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Note that the bar plot in panel <bold>(a)</bold> represents the mean
value of <inline-formula><mml:math id="M316" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> over all assessment metrics.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/1405/2023/bg-20-1405-2023-f05.png"/>

        </fig>

      <?pagebreak page1414?><p id="d1e4609">For the three Chl <inline-formula><mml:math id="M317" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>-related metrics, the model performs worse than the
BGC-Argo climatology. This is unexpected, as the model incorporates a
reduced-order Kalman filter (Lellouche et al., 2013) that assimilates daily
L4 remotely sensed surface Chl <inline-formula><mml:math id="M318" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, providing a mixed-layer correction to the
modeled Chl <inline-formula><mml:math id="M319" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> (see Appendix). We verified that the assimilation of satellite
Chl <inline-formula><mml:math id="M320" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>  improves the model's ability to predict Chl <inline-formula><mml:math id="M321" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>, as the model–BGC-Argo-data misfit is lower compared with a simulation without assimilation (not
shown). Furthermore, the model–satellite misfit was also found to be lower
than the variability in the satellite data (European
Union-Copernicus Marine Service, 2019). These results suggest that
discrepancies between the assimilated satellite Chl <inline-formula><mml:math id="M322" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>  product and the
BGC-Argo data may be responsible for the observed model–BGC-Argo-data
misfit. Therefore, we suggest that future studies investigate the
consistency between ocean color products and BGC-Argo Chl <inline-formula><mml:math id="M323" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> products at a
global scale, as these two products are expected to be assimilated together
in future operational BGC systems (Ford, 2021).</p>
      <p id="d1e4663">Overall, the model also performs worse or no better than the BGC-Argo
climatology with respect to predicting POC concentrations, the magnitude and depth of
OMZs, pH<inline-formula><mml:math id="M324" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula>, and <inline-formula><mml:math id="M325" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M326" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>. The poor performance of
PISCES-based simulations relative to BGC-Argo POC observations has been
extensively studied in Gali et al. (2022). They
pointed out that the large model–data misfit could be the result of an
imperfect BGC-Argo POC–<inline-formula><mml:math id="M327" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> conversion factor, unsuitable model
parameters associated with POC dynamics, and missing processes in the model
structure. Similarly, the poor model skill in capturing the OMZs' dynamics
has also already been documented in several studies
(Busecke
et al., 2022; Schmidt et al., 2021; Cabré et al., 2015). All of<?pagebreak page1415?> these
studies suggested that improving the ocean circulation in physical models
may be the most important factor to improve the accuracy of OMZs' model
predictions. Finally, the negative model efficiencies for pH<inline-formula><mml:math id="M328" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula> and
<inline-formula><mml:math id="M329" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M330" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> can be attributed to the fact that these variables are
driven by DIC, Alk, temperature, and salinity. Therefore, even small
uncertainties in the model estimates of DIC, Alk (as shown in Fig. 3b),
temperature, and salinity (Lellouche et al.,
2018) can result in poor model performance in capturing the variability in
pH and <inline-formula><mml:math id="M331" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M332" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. This highlights the importance of accurately modeling
these four variables to improve model estimates of pH and <inline-formula><mml:math id="M333" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M334" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S4.SS7">
  <label>4.7</label><title>Recommendation for the design of the BGC-Argo observing system</title>
      <p id="d1e4776">Observing system simulation experiments (OSSEs) have been the primary tool used to provide
information about the design of the BGC-Argo observing system
(Ford,
2021; Biogeochemical-Argo Planning Group, 2016). OSSEs typically comprises a
realistic “nature run”, which represents “the truth” from which
synthetic observations are sampled. The synthetic observations represent the
observing system to be designed. To test its impact on improving model's
predictive skill, the synthetic observations are then assimilated in an
“assimilative run”. The accuracy of the assimilative run is then
evaluated against the nature run. Here, we use the real BGC-Argo
observations to provide information about the design of the BGC-Argo network. More
specifically, our aim is to gain information about the regions where the model<?pagebreak page1416?> errors
are greater than the variability in the BGC-Argo data and, consequently,
where BGC-Argo observations should be enhanced to improve the model accuracy
via BGC-Argo data assimilation or process-oriented assessment studies.</p>
      <p id="d1e4779">For a given BGC region, we compute a single multivariate score corresponding
to the median of the 23 <inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values associated with each assessment metric (Fig. 6).
This is consistent with the fact that the BGC-Argo floats which are now
deployed observe the five variables used to derive the assessment metrics,
i.e., O<inline-formula><mml:math id="M336" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, Chl<inline-formula><mml:math id="M337" display="inline"><mml:msub><mml:mi/><mml:mi>a</mml:mi></mml:msub></mml:math></inline-formula>, <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and pH. In the Arctic and
Southern Oceans BGC regions (typically north of 60<inline-formula><mml:math id="M340" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and south of
60<inline-formula><mml:math id="M341" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, respectively), the median <inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is barely greater than 0, suggesting that, in
these regions, the model performs slightly better than a simple mean of the
observed values. In these two regions, the model is not well constrained by
the assimilation of remotely sensed Chl <inline-formula><mml:math id="M343" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> because satellite observations of
ocean color are not possible for most of the year due to ubiquitous cloud
cover. In addition, the scarcity of in situ observations probably makes the
climatological forcing less efficient in these regions. Together, these
factors are likely to lead to poorer model performance compared with other
regions. Consequently, we strongly recommend enhancing the Arctic region
where BGC-Argo observations are scarce (Fig. 1) and where the winter–spring
months are particularly undersampled (not shown). We also recommend
maintaining the existing high density of BGC-Argo observations in the
Southern Oceans. These observations are critical to better constrain the
model in these two regions where the constraint of models via the assimilation of
satellite observations is not possible for most of the year.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e4879">In this study, we propose a method based on the global data set of BGC-Argo
observations, a <inline-formula><mml:math id="M344" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering algorithm, and 23 assessment metrics to
simplify model–data comparison and provide information on the Copernicus<?pagebreak page1417?> Marine Service
forecasting system predictive skill and the design of the BGC-Argo observing
system. The <inline-formula><mml:math id="M345" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means algorithm identified eight BGC regions in the model
simulation that are consistent with the work of Fay and McKinley (2014). Within each BGC region and
for each assessment metric, we compute a model efficiency statistical score
that quantifies whether the model outperforms the BGC-Argo climatology by
comparing the model–BGC-Argo-data mean-square difference with the
observation variance.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e4898">Median of the 23 <inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values associated with each assessment metric by
BGC region.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/1405/2023/bg-20-1405-2023-f06.png"/>

      </fig>

      <p id="d1e4918">Overall, the model surpasses the BGC-Argo climatology with respect to predicting pH, DIC,
Alk, O<inline-formula><mml:math id="M347" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, NO<inline-formula><mml:math id="M348" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, and <inline-formula><mml:math id="M349" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the mesopelagic and mixed layers as
well as Si in the mesopelagic layer. For the other metrics, whose model
predictions are outperformed by the BGC-Argo climatology, we provide
suggestions to reduce the model–data misfit and, thus, increase the model
efficiency. Regarding the estimation of Si in the mixed layer, we suggest
the presence of additional factors that may affect the model's ability to
accurately estimate this variable. Further investigation is necessary to
identify these factors and improve the model's performance in this regard.
For Chl <inline-formula><mml:math id="M350" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>-related metrics, we recommend checking the consistency between ocean
color products and BGC-Argo Chl <inline-formula><mml:math id="M351" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> products at the global scale, as this may
explain part of the misfit between the model, which assimilates satellite
Chl <inline-formula><mml:math id="M352" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> and BGC-Argo observations. The discrepancies between modeled and
observed POC and OMZs have been already investigated in previous studies. It
has been suggested that improving the BGC-Argo POC–<inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mtext>bp</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> conversion
factor, tuning the model parameters, and implementing missing processes in
the model structure could decrease the model–data inconsistencies associated
with POC dynamics. Similarly, improving the ocean circulation in physical
models should improve the accuracy of OMZ model predictions. Finally,
pH<inline-formula><mml:math id="M354" display="inline"><mml:msub><mml:mi/><mml:mtext>mixed</mml:mtext></mml:msub></mml:math></inline-formula> and <inline-formula><mml:math id="M355" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M356" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">mixed</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> should be better modeled if the
uncertainties associated with DIC, Alk, temperature, and salinity in the
mixed layer are reduced.</p>
      <p id="d1e5013">The proposed method can also be used to optimize the design of the BGC-Argo
network. In particular, the regions where BGC-Argo observations should be
enhanced to reduce the model–data misfit via the assimilation of
BGC-Argo data or process-oriented assessment studies. We strongly recommend
enhancing the observation density in the Arctic region and maintaining the
existing high density of observations in the Southern Oceans. These are two
regions where the model error is barely less than the variability in
BGC-Argo observations and where it is not possible to use satellite
observations to constrain the models via assimilation most of the year.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title/>
      <p id="d1e5026">The model used in this study features the offline coupled NEMO–PISCES
model with a <inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> horizontal resolution, 50 vertical levels (22 levels in the upper 100 m, and the vertical resolution decreases from 1 m near the surface to 450 m near the ocean bottom), and a daily temporal
resolution, covering the period from 2009 to 2020.</p>
      <p id="d1e5045">The biogeochemical model PISCES v2
(Aumont et al., 2015) is
a model of intermediate complexity designed for global ocean applications
and is part of NEMO modeling platform. It features 24 prognostic variables
and includes five nutrients that limit phytoplankton growth (nitrate,
ammonium, phosphate, silicate, and iron) and four living compartments (two
phytoplankton size classes, nanophytoplankton and diatoms, which are small and
large, respectively, and two zooplankton size classes, microzooplankton and
mesozooplankton, which are small and large, respectively); the bacterial pool is not
explicitly modeled. PISCES distinguishes three nonliving detrital pools
for organic carbon, particles of calcium carbonate, and biogenic silicate.
Additionally, the model simulates the carbonate system and dissolved oxygen.
PISCES has been successfully used in a variety of biogeochemical studies,
both at the regional and global scale
(Bopp
et al., 2005; Gehlen et al., 2006, 2007; Gutknecht et al., 2019; Lefèvre
et al., 2019; Schneider et al., 2008; Séférian et al., 2013;
Steinacher et al., 2010; Tagliabue et al., 2010).</p>
      <p id="d1e5048">The dynamical component is the latest Mercator Ocean global <inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">12</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
high-resolution ocean model system, extensively described and validated in
Lellouche et al. (2013,
2018). This system provides daily and <inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> coarsened fields of
horizontal and vertical current velocities, vertical eddy diffusivity, mixed-layer depth, sea-ice fraction, potential temperature, salinity, sea surface
height, surface wind speed, freshwater fluxes, and net surface solar
shortwave irradiance that drive the transport of biogeochemical tracers.
This system also features a reduced-order Kalman filter based on the
singular evolutive extended Kalman filter (SEEK) formulation introduced by
Pham et al. (1998), which assimilates, on a 7 d assimilation
cycle, along-track altimeter data, satellite sea surface temperature and
sea-ice concentration from Operational Sea Surface Temperature and Sea Ice Analysis (OSTIA), and in situ temperature and salinity vertical
profiles from the Coriolis Dataset for ReAnalysis (CORA) version 4.2 in situ database.</p>
      <?pagebreak page1418?><p id="d1e5083"><?xmltex \hack{\newpage}?>In addition, the biogeochemical component of the coupled system also embeds
a reduced-order Kalman filter (similar to the abovementioned filter) that
operationally assimilates daily L4 remotely sensed surface chlorophyll
(European Union-Copernicus Marine Service, 2022). Thanks
to a multivariate formulation of model error covariances, the system is able
to provide a three-dimensional correction to the nanophytoplankton, diatoms, and nitrates
model concentrations from the surface chlorophyll data provided by
satellite observations.</p>
      <p id="d1e5088">In parallel, climatological damping is applied to nitrate, phosphate,
oxygen, and silicate with the World Ocean Atlas 2013, to dissolved inorganic
carbon and alkalinity with the GLODAPv2 climatology (Lauvset et al.,
2016), and to dissolved organic carbon and iron with a 4000-year PISCES
climatological run. This relaxation is set to mitigate the impact of the
physical data assimilation in the offline coupled
hydrodynamic–biogeochemical system, leading to significant rises in nutrients
in the equatorial belt area and resulting in an unrealistic drift of
various biogeochemical variables, such as chlorophyll, nitrate, and phosphate
(Fennel et al., 2019; Park et al., 2018).
The timescale associated with this climatological damping is set to 1 year
and allows a smooth constraint that has been shown to be efficient to reduce
the model drift.</p>
</app>
  </app-group><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e5095">The Global Ocean Biogeochemistry Analysis and Forecast system data are publicly available for download via the Copernicus Marine Service (<ext-link xlink:href="https://doi.org/10.48670/MOI-00015" ext-link-type="DOI">10.48670/MOI-00015</ext-link>, European Union-Copernicus Marine Service, 2019). Data prior to 4 May 2019 must be requested directly from the authors.
The BGC-Argo data and metadata were collected and made freely available by the international Argo program and the national programs that contribute to it (<ext-link xlink:href="https://doi.org/10.17882/42182" ext-link-type="DOI">10.17882/42182</ext-link>, Argo, 2023). The Argo program is part of the Global Ocean Observing System (<uri>ftp://ftp.ifremer.fr/ifremer/argo</uri>, last access: January 2023).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e5110">AM, GC, FD, SS, and VT conceived of the study. AM, HC,
FD, RS, and VT designed the study. AM and RS process the BGC-Argo float
data. AM analyzed the data. AM wrote the first draft of the manuscript. HC,
GC, FD, EG, PL, CP, SS, RS, VT, and AT contributed to the subsequent drafts.
All authors read and approved the final draft.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e5116">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e5122">Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><notes notes-type="sistatement"><title>Special issue statement</title>

      <p id="d1e5128">This article is part of the special issue “Biogeochemistry in the BGC-Argo era: from process studies to ecosystem forecasts (BG/OS inter-journal SI)”. It is not associated with a conference.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5134">The authors would like to thank the International Argo Program, the Coriolis Project and the Copernicus Marine Service (CMEMS) for their contribution in making the data publicly and freely available, which allowed the successful completion of this study. Part of this work was carried out as part of the BIOOPTIMOD and MASSIMILI CMEMS Service Evolution projects, and we gratefully acknowledge their support.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e5140">This project has been funded by the European Union's Horizon 2020 Research and Innovation program under grant agreement no. 862626 (EuroSea). This paper is a contribution to the following research projects: NAOS (funded by the Agence Nationale de la Recherche under the French “Equipement d'avenir” program, grant no. ANR J11R107-F), remOcean (funded by the European Research Council, grant no. 246777), and the French Bio-Argo program (BGC-Argo France, funded by CNES-TOSCA, LEFE-GMMC).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e5146">This paper was edited by Tina Treude and reviewed by Marcello Vichi and two anonymous referees.</p>
  </notes><ref-list>
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