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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \bartext{Research article}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-20-2369-2023</article-id><title-group><article-title>Dynamics of short-term ecosystem carbon fluxes induced by precipitation events in a semiarid grassland</article-title><alt-title>Dynamics of short-term ecosystem carbon fluxes</alt-title>
      </title-group><?xmltex \runningtitle{Dynamics of short-term ecosystem carbon fluxes}?><?xmltex \runningauthor{J.~Delgado-Balbuena~et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Delgado-Balbuena</surname><given-names>Josué</given-names></name>
          <email>delgado.josue@inifap.gob.mx</email>
        <ext-link>https://orcid.org/0000-0001-7928-1869</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Loescher</surname><given-names>Henry W.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Aguirre-Gutiérrez</surname><given-names>Carlos A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Alfaro-Reyna</surname><given-names>Teresa</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Pineda-Martínez</surname><given-names>Luis F.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0803-5625</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Vargas</surname><given-names>Rodrigo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6829-5333</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Arredondo</surname><given-names>Tulio</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Centro Nacional de Investigación Disciplinaria Agricultura Familiar, INIFAP, km 8.5 Carr. Ojuelos – Lagos de Moreno, 47563, Ojuelos de Jalisco, Jal., Mexico</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Battelle, National Ecological Observatory Network (NEON), Boulder, CO 80301, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institute of Alpine and Arctic Research (INSTAAR), University of Colorado, Boulder, CO 80301, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Unidad Académica de Ciencias Sociales, Universidad Autónoma de Zacatecas, 108 Calzada Universidad, 98066 Zacatecas, Zacatecas, Mexico</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19716, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Division de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica, <?xmltex \hack{\break}?> Camino a la Presa de San José 2055, Lomas 4ta, 78216 San Luís Potosí, S.L.P., Mexico</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Josué Delgado-Balbuena (delgado.josue@inifap.gob.mx)</corresp></author-notes><pub-date><day>22</day><month>June</month><year>2023</year></pub-date>
      
      <volume>20</volume>
      <issue>12</issue>
      <fpage>2369</fpage><lpage>2385</lpage>
      <history>
        <date date-type="received"><day>30</day><month>November</month><year>2022</year></date>
           <date date-type="accepted"><day>7</day><month>May</month><year>2023</year></date>
           <date date-type="rev-recd"><day>4</day><month>May</month><year>2023</year></date>
           <date date-type="rev-request"><day>13</day><month>December</month><year>2022</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2023 Josué Delgado-Balbuena et al.</copyright-statement>
        <copyright-year>2023</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023.html">This article is available from https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e173">Infrequent and small precipitation (PPT) events characterize PPT patterns in semiarid grasslands; however, plants and soil microorganisms are
adapted to use the unpredictable small pulses of water. Several studies have shown short-term responses of carbon and nitrogen mineralization rates
(called the “priming effect” or the Birch effect) stimulated by wet–dry cycles; however, dynamics, drivers, and the contribution of the priming
effect to the annual <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> balance are poorly understood. Thus, we analyzed 6 years of continuous net ecosystem exchange measurements to
evaluate the effect of the PPT periodicity and magnitude of individual PPT events on the daily/annual net ecosystem <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> exchange (NEE) in a semiarid
grassland. We included the period between PPT events, previous daytime NEE rate, and previous soil moisture content as the main drivers of the
priming effect. Ecosystem respiration (ER) responded within a few hours following a PPT event, whereas it took 5–9 <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> for gross ecosystem exchange (GEE; where <inline-formula><mml:math id="M4" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>NEE <inline-formula><mml:math id="M5" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> GEE <inline-formula><mml:math id="M6" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> ER) to respond. Precipitation events as low as 0.25 <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>
increased ER, but cumulative PPT <inline-formula><mml:math id="M8" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 40 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> infiltrating deep into the soil profile stimulated GEE. Overall, ER fluxes following PPT events
were related to the change in soil water content at shallow depth and previous soil conditions (e.g., previous NEE rate, previous soil water
content) and the size of the stimulus (e.g., PPT event size). Carbon effluxes from the priming effect accounted for less than 5 % of ecosystem
respiration but were significantly high with respect to the carbon balance. In the long term, changes in PPT regimes to more intense and less frequent
PPT events, as expected due to the effects of climate change, could convert the semiarid grassland from a small <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> sink to a <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> source.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Consejo Nacional de Ciencia y Tecnología</funding-source>
<award-id>CF 320641</award-id>
<award-id>CB 2008-01 102855</award-id>
<award-id>2013 220788</award-id>
<award-id>108000</award-id>
</award-group>
<award-group id="gs2">
<funding-source>National Science Foundation</funding-source>
<award-id>EF-1029808</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e270">Arid lands comprise many ecosystem types covering more than 30 % of terrestrial land (Lal, 2004). In these ecosystems annual potential
evapotranspiration is larger than yearly precipitation due to regional atmospheric high-pressure zones (i.e., Hadley cells), continental winds, cold
oceanic winds, and local orographic effects that reduce the precipitation (PPT) amounts (Maliva and Missimer, 2012). Here, PPT occurs as
infrequent, discrete, small (<inline-formula><mml:math id="M12" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), and unpredictable events (Noy-Meir, 1973; Loik et al., 2004). This results in water-limited
ecosystems, where biological activity is restricted to periods of soil water availability (Lauenroth and Sala, 1992). Consequently, the productivity
and stability of these ecosystems are more vulnerable to changes in<?pagebreak page2370?> climate, particularly to changes in the historic mean annual PPT amounts (MAP;
Wang et al., 2021) and the change in the periodicity (i.e., frequency) of these PPT events (Korell et al., 2021; Nielsen and Ball, 2015).</p>
      <p id="d1e288">Precipitation stimulates short-term changes in carbon and nitrogen mineralization rates because soil microorganisms activate with increased soil water
content (Turner and Haygarth, 2001). This “priming effect” (Borken and Matzner, 2009), also called the Birch effect (Birch, 1964), describes the
soil carbon released from the decomposition of heterotrophic sources to the atmosphere following soil rewetting. The amount and timing of PPT events
modify the magnitude and duration of the priming effect by modulating soil wet–dry cycles. The size of a PPT event determines the temporal duration
and the biotic components that respond to the pulse (Huxman et al., 2004a), thus defining the magnitude and direction of <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> effluxes (Chen
et al., 2019). In general, small precipitation events that induce changes in soil humidity at shallow
depths do not induce plant activity but activate soil microorganisms (Collins et al., 2008) and consequently enhance <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> effluxes (Vargas
et al., 2012). On the other hand, successive rewetting cycles reduce carbon mineralization rates as the amount of available organic labile carbon
declines (Jarvis et al., 2007). Thus, PPT events after long drought periods (until 9 months in semiarid grassland) trigger larger and longer soil
respiration efflux rates than consecutive PPT events (Reichmann et al., 2013; Vargas et al., 2018).</p>
      <p id="d1e313">At the ecosystem scale, deserts and grasslands have shown larger <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> efflux rates after rewetting than temperate ecosystems or croplands
(Kim et al., 2012) and in ecosystems with low soil organic carbon content (Bastida et al., 2019). Characteristics and dynamics of these short-term
soil <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> effluxes were addressed by the “threshold-delay” model (T-D model; Ogle and Reynolds, 2004). The T-D model takes previous
environmental conditions, PPT event size, PPT thresholds, and time delays to inform the time constants that modulate ecosystem responses after a PPT
event. Moreover, Huxman et al. (2004a) described the dynamics of the net ecosystem exchange of carbon (NEE) and its components (gross ecosystem
exchange (GEE) and ecosystem respiration (ER), such as –NEE <inline-formula><mml:math id="M18" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> GEE <inline-formula><mml:math id="M19" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> ER) with parameters of the T-D model (Fig. A1 in the Appendix). GEE and ER have
different time delays based on threshold PPT quantities and event size, with ER responding to smaller PPT events than GEE (Huxman et al., 2004a). In
addition, GEE and ER have asymptotic responses to large PPT events (the upper PPT thresholds), with an upper ER threshold lower than that found for
GEE (Huxman et al., 2004b).</p>
      <p id="d1e349">In the semiarid grasslands of Mexico, small PPT events likely activate biological soil crusts (BSCs) that cover up to 60 % of plant interspaces
(Concostrina-Zubiri et al., 2014) and stimulate ER instead of <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake. However, <italic>Bouteloua gracilis</italic> H.B.K. Lag. ex Steud (blue grama),
the keystone species in the semiarid grassland of Mexico (Medina-Roldán et al., 2007), may contribute to <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake because of its adaptations
to take advantage of small PPT events (Sala and Lauenroth, 1982; Medina-Roldán et al., 2013). Understanding disturbances of ecosystem processes (C fluxes) due to changing regional PPT patterns in semiarid grasslands is particularly
salient given that the global circulation models forecast between a 10 % and 30 % reduction in summer and winter precipitation, respectively, by
the end of the 21st century (Christensen et al., 2007). Furthermore, PPT patterns are expected to have fewer events with more water quantity per
event (Easterling et al., 2000).</p>
      <p id="d1e372">The objective of this study was to evaluate the effect of PPT periodicity and the magnitude of individual PPT events and a priori soil moisture conditions
on daily and annual ecosystem <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> balance (NEE) for the semiarid grassland in Mexico. Over a 6-year study period, we examined event-based PPT
amount, the period between PPT events, and the previous daytime NEE rate and soil water content at two depths as the main drivers of daily mean NEE
change rate. Because we were interested in short-term NEE changes and their components, only short-term NEE changes within a few days following a PPT
event were evaluated. Effects on daily mean GEE (GEE <inline-formula><mml:math id="M23" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> –NEE <inline-formula><mml:math id="M24" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> ER) were also evaluated at the beginning of the growing season. Based on the
T-D model (Ogle and Reynolds, 2004), we expect that (1) semiarid grassland will exhibit a quick response (short time delay) to small PPT events (low
PPT threshold) through positive NEE fluxes (<inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> release, H1). Moreover, (2) ER and GEE (<inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> release and <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake, respectively) will
differ in their response times and PPT thresholds, with shorter time delays and lower PPT thresholds for ER than GEE (H2). This response is because
small PPT events should enhance ER mainly through heterotrophic respiration of soil surface microorganisms that are activated within 1 h after
wetting (Placella et al., 2012), whereas larger PPT events are required to reach roots at deeper soil profiles and longer times for plants to start
growing. On the other hand, we expect that (3) the size and timing of PPT patterns will modulate the magnitude of <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux; therefore, large
precipitation events after long dry periods will release more <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> than small or consecutive PPT events (H3). Finally, we expect
(4) <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux after PPT events will be a meaningful <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> source to the atmosphere in the semiarid grassland, decreasing the ecosystem's
annual net <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake (H4).</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Materials and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Site description</title>
      <p id="d1e483">The study site is located on a shortgrass steppe within the Llanos de Ojuelos subprovince of the state of Jalisco, Mexico. The shortgrass biome in Mexico
extends from the North American Midwest along a strip that follows the Sierra Madre Occidental through the Chihuahuan Desert into the<?pagebreak page2371?> subprovince
Llanos de Ojuelos. Vegetation is dominated by grasses, with <italic>Bouteloua gracilis</italic> (Willd. ex Kunth) Lag. ex Griffiths as the key grass species,
forming near mono-specific stands. The region has a semiarid climate with mean annual precipitation of 424 <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M34" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 11 <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> (last
30 years, Delgado-Balbuena et al., 2019) distributed mainly between June and September and with 6–9 months of low PPT. Winter–summer rain accounts for <inline-formula><mml:math id="M36" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 20 % of annual precipitation (Delgado-Balbuena et al., 2019). The
mean annual temperature is 17.5 <inline-formula><mml:math id="M37" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.5 <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>. The topography is characterized by valleys and gentle rolling hills with soils
classified as Haplic Xerosols (associated with Lithosols and Eutric Planosols) and Haplic Phaeozems (associated with Lithosols) (Aguado-Santacruz,
1993). Soils are shallow, with an average depth of 0.3–0.4 <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> containing a cemented layer at <inline-formula><mml:math id="M40" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5 <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> deep, with textures dominated
by silty clay and sandy loam soils (Aguado-Santacruz, 1993).</p>
      <p id="d1e562">The study site is a fenced area of <inline-formula><mml:math id="M42" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 64 <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ha</mml:mi></mml:mrow></mml:math></inline-formula> of semiarid grassland under grazing management. A 6 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> high tower was placed at the
center of the area of interest to support carbon–energy flux measurements and meteorological instruments. That location allowed an ever-changing and
integrated measurement footprint of 320, 410, 580, and 260 <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the tower according to the N, E, S, and W orientations, respectively. The
study site is part of the MexFlux network (Vargas et al., 2013).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Meteorological and soil measurements</title>
      <p id="d1e604">Meteorological data were collected continuously at a rate of 1 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> and averaged at 30 <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> intervals using a datalogger (CR3000, Campbell
Scientific Inc., Logan, UT). Variables measured included air temperature and relative humidity (HMP45C, Vaisala, Helsinki, Finland) housed into a
radiation shield (R.M. Young Company Inc., Traverse City, MI), incident and reflected shortwave and longwave solar radiation (NR01, Hukseflux,
the Netherlands), and photosynthetic photon flux density (PPFD; PAR LITE, Kipp &amp; Zonen, Delft, the Netherlands). Soil variables were measured at a
5 <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> frequency and averaged at 30 <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> intervals. These included volumetric soil water content (CS616, Campbell Scientific Inc., Logan, UT)
positioned horizontally to 2.5 and 15 <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> deep, average soil temperature of the top 8 <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> soil profile, and soil temperature at
5 <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> deep (T108 temperature probes, Campbell Scientific Inc., Logan, UT). Soil temperature variables were acquired with another datalogger
(CR510, Campbell Scientific Inc., Logan, UT). Precipitation was measured with a bucket rain gauge installed 5 <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> away from the tower (FTS,
Victoria, British Columbia, Canada) at 1 <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">a</mml:mi><mml:mo>.</mml:mo><mml:mi mathvariant="normal">g</mml:mi><mml:mo>.</mml:mo><mml:mi mathvariant="normal">l</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></inline-formula></p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><?xmltex \opttitle{Net ecosystem {$\protect\chem{CO_{{2}}}$} exchange measurements}?><title>Net ecosystem <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> exchange measurements</title>
      <p id="d1e712">An open-path eddy covariance system was placed at 3 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> high to cover a fetch of 300 <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and used to measure NEE over the semiarid
grassland. The system consisted of a three-dimensional sonic anemometer (CSAT3, Campbell Scientific Inc., Logan, UT) for measuring wind velocity on each polar
coordinate (<inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>,</mml:mo><mml:mi>w</mml:mi></mml:mrow></mml:math></inline-formula>) and sonic temperature (<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>s</mml:mi></mml:mrow></mml:math></inline-formula>) and an open-path infrared gas analyzer (IRGA; Li-7500, LI-COR Inc., Lincoln, NE) to
measure <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and water vapor concentrations. Instruments were mounted in a tower at 3 <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> above the soil surface, oriented towards the
prevailing winds. The IRGA sensor was mounted with a 10 <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> offset from the anemometer
transducers; the center of the IRGA optical path was centered with the distance between the vertically oriented sonic transducers and
tilted 45<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> to avoid dust and water accumulation in the IRGA optical path. The digital signal of both sensors was recorded at a sampling rate of
10 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula> in a datalogger (CR3000, Campbell Scientific Inc., Logan, UT) (Ocheltree and Loescher 2007). NEE was estimated as
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M65" display="block"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mrow><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msup><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>′</mml:mo></mml:msup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the overbar denotes time averaging (30 <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula>), and primes are the deviations of instantaneous values (at 10 <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula>) of vertical wind speed
(<inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and molar volume of <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) from the
block-averaged mean. Micrometeorological convention was used, where negative NEE values stand for ecosystem <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake (Loescher et al.,
2006). We did not estimate a storage flux because of the low vegetation stature and well-mixed conditions; therefore, we assumed it would be 0 over a
24 <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> period (Loescher et al., 2006).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Data processing</title>
      <p id="d1e952">Raw eddy covariance data were processed in EdiRe (v1.5.0.10, University of Edinburgh, Edinburgh, UK). Wind velocities, sonic temperature and
<inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> signals were despiked (Vickers and Mahrt, 1997); any value
larger than 6 standard deviations into a moving window (5 <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula>) was considered a spike, whereas those values with a deviation larger than
8 standard deviations were flagged as outliers. A two-dimensional coordinate rotation was applied to sonic anemometer wind velocities to obtain turbulence
statistics perpendicular to the local streamline. Lags between horizontal wind velocity and scalars were removed with a cross-correlation procedure to
maximize the covariance among signals. Carbon and water vapor fluxes were estimated as molar fluxes (<inline-formula><mml:math id="M78" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) at
30 <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> block averages, and then they were corrected for air density fluctuations (WPL correction; Webb et al., 1980). Frequency response
correction was done after Massman (2000). Sensible heat flux was estimated from the covariance between fluctuations of horizontal wind
velocity (<inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msup><mml:mi>w</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) and sonic temperature (<inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msub><mml:msup><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). This buoyancy flux was corrected for humidity effects (Schotanus
et al., 1983; Foken et al., 2012).</p>
      <?pagebreak page2372?><p id="d1e1055">Fluxes were submitted to quality control procedures, namely (i) stationarity (<inline-formula><mml:math id="M82" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 50 %); (ii) integral turbulence characteristics (<inline-formula><mml:math id="M83" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 50 %);
(iii) flags of IRGA and sonic anemometer (AGC value <inline-formula><mml:math id="M84" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 75, max CSAT diagnostic flag <inline-formula><mml:math id="M85" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 63), which are frequently caused by raindrops on the
anemometer transducers and IRGA path; (iv) screening of flux values into expected magnitudes (<inline-formula><mml:math id="M86" display="inline"><mml:mo lspace="0mm">±</mml:mo></mml:math></inline-formula> 20 <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>);
and (v) the <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> threshold was used to filter nighttime NEE under poorly developed turbulence. This threshold was defined through the
99 % threshold criterion after Reichstein et al. (2005); it varied seasonally among years with around 0.1 <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1156">Temporally integrated estimates are noted throughout this paper. Because GEE cannot be measured directly, it was estimated from light-response curves
(see below), whereas ER was determined from (i) light-response curves and (ii) nighttime NEE data (under PPFD <inline-formula><mml:math id="M90" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
light conditions). Henceforth, ecosystem respiration derived from light-response curves is denoted as ER and as nighttime NEE when derived
from nighttime net ecosystem exchange data.</p>
      <p id="d1e1194">For identifying changes induced by PPT events in GEE and ER, daytime and nighttime NEE data on a 1 d window were adjusted with a rectangular
hyperbolic response function to photosynthetic photon flux density (PPFD; Ruimy et al., 1995):
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M92" display="block"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>⋅</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow><mml:mo>⋅</mml:mo><mml:mi mathvariant="italic">β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>⋅</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mi mathvariant="italic">β</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">ER</mml:mi></mml:mrow><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M93" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> is the apparent quantum yield (<inline-formula><mml:math id="M94" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol CO<inline-formula><mml:math id="M95" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> m<inline-formula><mml:math id="M96" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M97" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M98" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>mol photons m<inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), <inline-formula><mml:math id="M102" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> is the
maximum photosynthetic capacity (<inline-formula><mml:math id="M103" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), and <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">ER</mml:mi></mml:mrow></mml:math></inline-formula> is the ecosystem respiration
(<inline-formula><mml:math id="M105" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Due to <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mrow><mml:mi>m</mml:mi><mml:mi>a</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> being calculated to unrealistic “infinite” <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:math></inline-formula>, we calculated a more realistic
maximum photosynthetic capacity (<inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2500</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), which is the maximum photosynthesis at 2500 <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Changes and transitions from
ER-dominated NEE fluxes to <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>-gain processes (GEE) were verified with the shape of the light-response curve.</p>
      <p id="d1e1486">We choose this method instead of standard partitioning procedures (i.e., Reichstein et al., 2005, or Lasslop et al., 2010) because we were interested in detecting changes at a 1 d scale. Both algorithms use data windows larger than 1 d to
estimate some parameters and tend to smooth fast changes in soil respiration like those observed in this study. For visually checking for changes in GEE
and ER at a diel time step, 0.5 h of NEE were partitioned by Eq. (2) and then averaged by day.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Gap-filling procedures and characterization of PPT events</title>
      <p id="d1e1498">Data gaps shorter than 2 h were linearly interpolated, whereas gaps larger than 2 h were left as empty data. Only daytime NEE data were
used for most of the analysis because nighttime NEE is subjected to quality problems like poorly developed turbulence. Moreover, if mean NEE is
estimated from only a few 30 <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> nighttime NEE 0.5 h, the estimate may be biased if the full night cycle is not represented similarly
across days. The NEE-related PPT events were selected for analysis based on data quality and availability to evenly cover the daytime cycle (on
average more than 85 % of NEE data) and then averaged through the day. The daytime scale was selected to avoid confounding diurnal NEE variability
and to achieve robust analyses. All precipitation events between 2011 and 2016 were isolated and filtered by the number of 0.5 h that accounted for
mean daily fluxes.</p>
      <p id="d1e1509">Mean ER derived from nighttime NEE data was used for analysis only when more than 50 % of the data were available after QA/QC procedures. This
data were exclusively used for correlation with environmental and soil data (see “Statistical analysis” section). In contrast, daytime NEE (without
partitioning) was used for the analysis of changes in NEE fluxes induced by PPT events.</p>
      <p id="d1e1512">The <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> flux 1 d before the PPT event was taken as the reference <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> flux. The event-response effect (priming NEE effect) was
measured as the difference between mean daytime NEE post-event and mean daytime NEE pre-event, described as
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M114" display="block"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow><mml:mtext>post-event</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow><mml:mtext>pre-event</mml:mtext></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where NEE is the daytime NEE average (<inline-formula><mml:math id="M115" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). The same method was used to calculate changes in soil water content at 2.5 and
15 <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">VWC</mml:mi></mml:mrow><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">VWC</mml:mi></mml:mrow><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, respectively) and changes in photosynthetic photon flux density
(<inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>). Intervals between PPT events (hereafter inter-event periods, IEPs) were counted in days from the last PPT event, regardless of
its magnitude.</p>
      <p id="d1e1636">The enhanced vegetation index (EVI) of 250 <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> spatial resolution and 8 <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> time resolution from NASA's MODIS instruments (Didan, 2021) was
used to approximate plant leaf activity. The Savitzky–Golay (Yang et al., 2014) filter was used to eliminate outliers of EVI derived from adverse
atmospheric conditions.</p>
      <p id="d1e1656">Considering that previous conditions are determinant for carbon fluxes, data were divided into fluxes dominated by photosynthesis (carbon uptake)
and fluxes dominated by ecosystem respiration (carbon efflux). A threshold of <inline-formula><mml:math id="M122" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> of average previous daytime
<inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux was used to divide data. This was done to avoid confounding factors because the environmental drivers of photosynthesis and
respiration may differ in magnitude and direction. Moreover, under photosynthetic conditions it is hard to identify if a positive change in NEE (less
photosynthesis) was due to an increase in soil respiration or a dampening of photosynthesis by less available radiation under cloudy conditions.</p>
      <p id="d1e1705">To estimate the contribution of the priming effect to the annual carbon balance in the semiarid grassland, we averaged and
extrapolated <inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> by the number of precipitation events per year. Decaying rates, PPT event size, and previous soil and flux conditions
were not considered in this approach. Although this is a rough estimation, it provides a broad overview of how precipitation patterns influence the
annual carbon balance. It is important to have this broad overview to better understand the impacts of climate change on carbon cycling in semiarid
grasslands.</p>
</sec>
<?pagebreak page2373?><sec id="Ch1.S2.SS6">
  <label>2.6</label><title>Statistical analysis</title>
      <p id="d1e1727">Boosted regression tree analysis (BRT; Elith et al., 2008) was developed to identify the most important variable controlling this response's
priming <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> effect and thresholds. BRT analysis was also used to identify the form of function, i.e., whether the relationship between
independent variables and the priming effect was linear, exponential, sigmoidal, peak shape, etc. Independent variables included PPT event size, inter-event periods (IEPs), previous and current volumetric water content (VWC), change in VWC at two depths (2.5 and 15 <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>), soil temperature, previous
daytime NEE, enhanced vegetation index (EVI), and change in photosynthetic photon flux density (<inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>). For BRT analysis, data were
divided into photosynthesis-dominated and respiration-dominated data. On the other hand, to identify delays between <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> fluxes (ecosystem
respiration and gross primary productivity) and precipitation events, a cross-correlation analysis was done. For cross correlation, the parameter of
the light-response curve was used; the ER was used to identify delays between ecosystem respiration and soil water content at 2.5 <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2500</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was used to identify delays between gross ecosystem productivity and soil water content at 15 <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> because ER and <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2500</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> were
better correlated with soil volumetric water content at 2.5 and 15 <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>, respectively. All these variables were detrended before
cross-correlation analysis. Finally, linear correlation analyses were performed among environmental variables, priming effect, and nighttime NEE (ER)
and among independent variables to test for autocorrelations. The gbm package (R Core Team) was used for performing BRT analysis, whereas the
astsa package for R was used to conduct cross-correlation analyses.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e1814">Seasonal and interannual variation in daily precipitation and cumulative precipitation <bold>(a)</bold> and volumetric soil water content at 2.5 (black line) and 15 <inline-formula><mml:math id="M135" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (gray line, <bold>b</bold>). The dotted line at 10 % of soil water content was depicted as a reference.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f01.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1839">Characterization of precipitation pattern. Histogram of the size of precipitation events through 6 years <bold>(a)</bold>, the accumulated precipitation by the size of the precipitation event <bold>(b)</bold>, and the number (%) of precipitation events by inter-event period classes (IEP, days; <bold>c</bold>). The relationship between the size of the precipitation event (<inline-formula><mml:math id="M136" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), previous volumetric soil water content at 2.5 <inline-formula><mml:math id="M137" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>), and the change in soil volumetric water content at 2.5 <inline-formula><mml:math id="M139" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>) <bold>(d)</bold>. Dynamic of soil water content at two depths (2.5 and 15 <inline-formula><mml:math id="M141" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>) after a precipitation event of 5 <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> through the time <bold>(e)</bold> and relationship between the inter-event period and the size of the precipitation event <bold>(f)</bold>.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f02.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Precipitation pattern</title>
      <p id="d1e1957">Cumulative precipitation for 2011 (288.5 <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>) was below the 30-year average for the site (420 <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>) and was the
worst drought of the last 70 years. In contrast, 2012 received less PPT (393.2 <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), and 2014 and 2016 received more PPT (528.5 and
436 <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>, respectively) than average, whereas 2013 (601.6 <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>) and 2015 (785.9 <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>) were very humid years (Fig. 1). The
6 years differed in precipitation frequency, but they were similar in the size of PPT events with <inline-formula><mml:math id="M149" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 60 % of the PPT events <inline-formula><mml:math id="M150" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M151" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>
(Fig. 2a). However, notwithstanding the lower proportion of larger-sized PPT events (PPT events <inline-formula><mml:math id="M152" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), they summed a similar or an even higher
amount of water than small PPT events (Fig. 2b). Overall, the precipitation pattern was characterized by short inter-event periods with 60 % of PPT
events falling consecutively (IEP <inline-formula><mml:math id="M154" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M155" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula>; Fig. 2c).</p>
      <p id="d1e2062"><?xmltex \hack{\newpage}?>Soil saturated after large or recurrent PPT events. Largely, soil moisture was maintained at over 10 % in the wettest years, with the largest
peak reaching 40 % in the summer of 2014 (Fig. 1b). Most VWC variability was observed at 2.5 <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> rather than 15 <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth, and it was
better correlated with precipitation amount per event (<inline-formula><mml:math id="M158" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M159" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.05, <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M161" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.72, Fig. 2d), increasing with22 0.3 % of VWC per <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> of
precipitation. The PPT events of 0.25 <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> increased the <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M165" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 %–2 %, but this increase lasted for less than
1 h, whereas <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> increased after PPT of <inline-formula><mml:math id="M167" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> (data not shown). Additionally, PPT events and soil moisture dynamics at
15 <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth were out of phase (up to 5 d between the PPT event and the <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> peak, Fig. 2e).</p>
      <p id="d1e2195">A total of 391 PPT events were isolated over the 6 years, but 34 % did not fulfill the representativity conditions of diel time representativity (<inline-formula><mml:math id="M171" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 85 %
of NEE data); thus, 256 events were used for statistical analysis. A sample of 100 <inline-formula><mml:math id="M172" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">PPT</mml:mi></mml:mrow></mml:math></inline-formula> events was used for the respiration-dominated fluxes
(<inline-formula><mml:math id="M173" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M174" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0 <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and 156 <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">PPT</mml:mi></mml:mrow></mml:math></inline-formula> events for the photosynthesis-dominated fluxes
(<inline-formula><mml:math id="M177" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M178" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0 <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Small precipitation events dominated our dataset but represented the precipitation pattern of the
site well. The sample was integrated by events ranging from 0.25 to 57.1 <inline-formula><mml:math id="M180" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> and a mean of 5.7 <inline-formula><mml:math id="M181" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.53 <inline-formula><mml:math id="M182" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> (mean <inline-formula><mml:math id="M183" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 SE). Large
PPT events occurred after short inter-event periods, and small PPT events were preceded by long inter-event periods. Medium PPT events after long
inter-event periods were rare, and extremely large PPT events after long inter-event periods were not observed (Fig. 2f).</p>
      <p id="d1e2337">The size of the precipitation event (PPT) and previous soil water content at 2.5 <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) explained a large variation in the
change in soil water content at 2.5 <inline-formula><mml:math id="M186" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M187" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M189" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.54; Fig. 2d). The best correlation among variables was
observed between previous soil water content and soil water content at different depths, for instance, <inline-formula><mml:math id="M190" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M193" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.84), between the same variables but at 2.5 <inline-formula><mml:math id="M194" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M196" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.81). The change in NEE (priming effect) did not have a strong
relationship with any single variable (Fig. A2).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e2469">Dynamics of <bold>(a)</bold> precipitation (<inline-formula><mml:math id="M197" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and net ecosystem exchange (NEE, <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, daily means <inline-formula><mml:math id="M199" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 SE) and its components, the gross ecosystem exchange (GEE, <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and ecosystem respiration (ER, <inline-formula><mml:math id="M201" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) for the transition from the dry (December–May) to the wet season (June–November) in 2013. <bold>(b)</bold> Volumetric soil water content dynamics (<inline-formula><mml:math id="M202" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">VWC</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>) at two depths (2.5 and 15 <inline-formula><mml:math id="M204" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>). Arrows indicate apparent changes in GEE and ER trends. The dotted line indicates <inline-formula><mml:math id="M205" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">SWC</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M206" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.1.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Time delays and thresholds</title>
      <p id="d1e2645">The minimum PPT event that altered NEE rates was 0.25 <inline-formula><mml:math id="M207" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>. Overall, the analysis of half-hourly fluxes showed an almost instantaneous positive
response of NEE to the PPT event that exponentially decreased over time into 0.5 to 2 h after the PPT event (Fig. A3). The ER rates increased
after 0.25 <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> PPT events, but we detected a different threshold for GEE where either a larger PPT event or multiple consecutive events
(e.g., <inline-formula><mml:math id="M209" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 40 <inline-formula><mml:math id="M210" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>, Fig. 2a) were needed and showed a delay of <inline-formula><mml:math id="M211" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> after the positive change in VWC at the 15 <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth,
this at the beginning of the growing season (Fig. 3a and b).</p>
      <?pagebreak page2374?><p id="d1e2703">Cross-correlation analysis of light-response curve parameters showed no lags between ecosystem respiration (ER) and volumetric soil water content
at 2.5 <inline-formula><mml:math id="M214" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. 3a), whereas there was a lag of 9 <inline-formula><mml:math id="M215" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula> between photosynthetic capacity at 2500 <inline-formula><mml:math id="M216" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2500</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; Fig. 3b) and
soil water content, which was longer than the observed lag at several precipitation events of 2013 (Fig. 2a and b).</p>
      <p id="d1e2741">The BRT analysis showed sigmoidal relationships between the priming effect and environmental variables with different thresholds. At the
respiration-dominated period, a minimum change in soil volumetric water content at 2.5 <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> positively affected the carbon flux, but a change
larger than 8 % in this variable did not induce a larger <inline-formula><mml:math id="M219" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux (upper threshold; Fig. 4). On the other hand, the <inline-formula><mml:math id="M220" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> priming effect was
larger under  previous neutral NEE (<inline-formula><mml:math id="M221" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">preNEE</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M222" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0) and decreased in magnitude as preNEE became more positive (Fig. 5). Moreover, previous
dry conditions at shallow soil depth promoted larger <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux by the priming effect, and this effect decreased as previous soil  conditions were
wetter, with a threshold at 15 % (Fig. 5). Like the change in soil water content at 2.5 <inline-formula><mml:math id="M224" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>, even the lowest PPT event (0.25 <inline-formula><mml:math id="M225" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>)
caused an increase in <inline-formula><mml:math id="M226" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux but with a threshold between 10–15 <inline-formula><mml:math id="M227" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>. Precipitation events larger than 15 <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> did not enhance
the priming effect (Fig. 5). In contrast, in the photosynthesis-dominated period, a larger priming effect was observed at more negative preNEE
(<inline-formula><mml:math id="M229" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>7 <inline-formula><mml:math id="M230" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and had no more effect at <inline-formula><mml:math id="M231" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M232" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4 <inline-formula><mml:math id="M233" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Dry-soil conditions enhanced the
priming effect at 15 <inline-formula><mml:math id="M234" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M235" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 30 %) with a rapid suppression after that. On the other hand, the priming effect was gradually
decreasing with reductions in PPFD.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e2929">Cross-correlation coefficients between detrended time series of soil water content at 2.5 <inline-formula><mml:math id="M236" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth and ecosystem respiration (ER; <bold>a</bold>) and between soil water content at 15 <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth and photosynthesis at 2500 <inline-formula><mml:math id="M238" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> of photosynthetic photon flux density (<inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2500</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; <bold>b</bold>).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e3002">Net ecosystem exchange (NEE) after a precipitation event showing the decreasing effect through time (days). The decreasing effect rate was adjusted to an exponential negative model <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M241" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">yo</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mi>a</mml:mi><mml:mo>⋅</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi>k</mml:mi><mml:mo>⋅</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The insert stands for the relationship between the decaying rate (<inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula>) and the PPT event that originated the NEE change. This relationship was fitted with an exponential model (black line; <inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M245" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">yo</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mi>a</mml:mi><mml:mo>⋅</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi>b</mml:mi><mml:mo>⋅</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PPT</mml:mi><mml:mi mathvariant="normal">event</mml:mi></mml:msub></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>). Symbols indicate different PPT event sizes that originated the NEE change, 13.7 <inline-formula><mml:math id="M247" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M248" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>), 16.74 <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M250" display="inline"><mml:mo lspace="0mm">▾</mml:mo></mml:math></inline-formula>), 6.86 <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M252" display="inline"><mml:mo lspace="0mm">∘</mml:mo></mml:math></inline-formula>), 10.08 <inline-formula><mml:math id="M253" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M254" display="inline"><mml:mo lspace="0mm">▪</mml:mo></mml:math></inline-formula>), and 2.52 <inline-formula><mml:math id="M255" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M256" display="inline"><mml:mo lspace="0mm">•</mml:mo></mml:math></inline-formula>).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f05.png"/>

        </fig>

      <p id="d1e3237">Nighttime NEE (ecosystem respiration derived from nighttime NEE data) showed a correlation with soil water content at the two depths and EVI; however,
the relationship was linear at low soil water content, reached a maximum at medium values of VWC, and then decreased with minimum values at high soil
water content. The largest ecosystem respiration was observed at the highest EVI values (Fig. A4).</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Dynamics and drivers of the priming effect</title>
      <?pagebreak page2375?><p id="d1e3248">The priming effect lasted longer with initial larger changes in NEE; i.e., whereas the priming effect was higher (<inline-formula><mml:math id="M257" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>NEE), the <inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> fluxes took more time in returning to initial values (before the PPT event). However, decreasing NEE rates were better explained by the PPT event size than by the initial change in NEE (insert Fig. 4). For instance, after a 13.7 <inline-formula><mml:math id="M259" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> PPT event and initial daytime NEE <inline-formula><mml:math id="M260" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 5.1 <inline-formula><mml:math id="M261" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, the <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> flux exponentially decreased at a rate of <inline-formula><mml:math id="M263" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 50 % of its earlier value, whereas with an initial NEE efflux <inline-formula><mml:math id="M264" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2.5 <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, the <inline-formula><mml:math id="M266" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> flux decreased at a rate of 100 % (Fig. 4). Thus, the total <inline-formula><mml:math id="M267" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux was a contribution of the initial change in NEE and the time taken to return to basal values (i.e., decreasing rates).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e3378">Fitted functions of the boosted regression trees between the priming <inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> effect and the four most important environmental variables at the ecosystem-respiration-dominated period <bold>(a–d)</bold> and at the photosynthesis-dominated period <bold>(e–h)</bold>. Priming effect (<inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), previous NEE (<inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">preNEE</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M272" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), previous VWC at 2.5 <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>), PPT event size (PPT, <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), VWC at 15 <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>), change in photosynthetic photon flux density (<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M281" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), and air temperature (<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>air</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M283" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>).</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f06.png"/>

        </fig>

      <?pagebreak page2376?><p id="d1e3614">According to the BRT analysis, the factor that most influenced the priming effect in the respiration-dominated period was the change in soil water content
at 2.5 <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>; relative importance, RI, <inline-formula><mml:math id="M286" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 18 %), which was followed by the previous NEE (preNEE;
RI <inline-formula><mml:math id="M287" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 14 %), the previous VWC at 2.5 <inline-formula><mml:math id="M288" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (RI <inline-formula><mml:math id="M289" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 14 %), and the size of the PPT event (RI <inline-formula><mml:math id="M290" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 13 %). All the other factors
had individual RI values lower than 10 % (Table 1; Fig. 6). Maximum <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> values were observed with (i) larger changes in soil water
content at 2.5 <inline-formula><mml:math id="M292" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (Fig. 6a), (ii) previous neutral NEE (i.e., NEE <inline-formula><mml:math id="M293" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0 <inline-formula><mml:math id="M294" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>; Fig. 6b), (iii) previous
dry-soil water content at 2.5 <inline-formula><mml:math id="M295" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (Fig. 6c), and (iv) large PPT events (<inline-formula><mml:math id="M296" display="inline"><mml:mo lspace="0mm">&gt;</mml:mo></mml:math></inline-formula> 15 <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>; Fig. 6d). The priming NEE effect
decreased farther than these limits. In contrast, in the photosynthesis-dominated period, the previous NEE was the most important factor explaining
the priming effect (RI <inline-formula><mml:math id="M298" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 33 %). In contrast, the volumetric water content at 15 <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth, the change in photosynthetic photon flux
density, and the volumetric water content at 2.5 <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth followed in importance (Table 1). Larger changes in NEE (priming effect) were
observed (i) at more negative previous NEE (i.e., under more photosynthetic activity; Fig. 6e), (ii) under drier soil water conditions at
15 <inline-formula><mml:math id="M301" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (Fig. 6f), (iii) with larger changes in PPFD (decrease in PPFD; Fig. 6g), and (iv) under air temperature lower
than 16 <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> and higher than 19 <inline-formula><mml:math id="M303" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. 6h). There was a large interaction between <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and PPT for the
respiration-dominated period and between preNEE and <inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> for the photosynthesis-dominated period.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e3845">Relative importance (RI) of the first four most important environmental factors for the priming <inline-formula><mml:math id="M306" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> effect.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">RI</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Respiration-dominated period</oasis:entry>
         <oasis:entry colname="col2"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">18.66</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M308" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">preNEE</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">14.67</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">14.08</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">PPT</oasis:entry>
         <oasis:entry colname="col2">13.64</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M310" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">8.09</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M311" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">7.46</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Photosynthesis-dominated period</oasis:entry>
         <oasis:entry colname="col2"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M312" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">preNEE</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">33.32</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M313" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">12.25</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">PPFD</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">11.52</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M315" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">9.16</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M316" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>air</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">8.32</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M317" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">7.79</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{1}?></table-wrap>

</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Contribution of the priming effect on the carbon balance</title>
      <?pagebreak page2377?><p id="d1e4112">The carbon balance for these 6 years for this site was <inline-formula><mml:math id="M318" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>126 <inline-formula><mml:math id="M319" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, with 2955 and <inline-formula><mml:math id="M320" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3080 <inline-formula><mml:math id="M321" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> of ecosystem respiration
and gross ecosystem exchange, respectively, and varied from a sink of <inline-formula><mml:math id="M322" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>107 <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> to a source of
114 <inline-formula><mml:math id="M324" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Delgado-Balbuena et al., 2019). A rough calculation of carbon efflux due to the priming effect indicated that
extrapolation of mean <inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> per event and by year contributes 142 <inline-formula><mml:math id="M326" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the full 6-year period, which corresponds
to 5 % of the total ER flux. In this calculation, parameters like decaying rates, the size of the PPT event, and previous soil and flux conditions were not
considered (modeled) and were subject to the number of PPT events. Logically, humid years with more PPT events have a higher contribution of
<inline-formula><mml:math id="M327" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux by the priming effect. Each year contributed less than 30 <inline-formula><mml:math id="M328" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Dynamics of the priming effect</title>
      <p id="d1e4310">In agreement with the T-D model, NEE exponentially decreased after the PPT pulse (Fig. 5) to almost the pre-PPT NEE rate. The largest <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux
pulses slowly returned to basal <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux rates and showed larger NEE remnants than the smaller pulses (Fig. 5). This suggests that more
persistent VWC quantities achieved with larger-sized PPT events promoted larger and longer <inline-formula><mml:math id="M331" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> emissions. If the event is large enough to
maintain VWC above a threshold for a long time (e.g., above the wilting point for plants), NEE is expected to remain higher than pre-event rates until
nutrients or labile <inline-formula><mml:math id="M332" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> are depleted (Jarvis et al., 2007; Xu et al., 2004). In contrast, when the PPT event is small, and the soil remains wet
for a short time, the <inline-formula><mml:math id="M333" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> flux peak will be small and less persistent because of soil dry-out, and the activity of microorganisms is likely to
end before soil nutrients are depleted. Thus, priming effect decaying rates (<inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula>) are  more likely an issue of water availability than nutrient or
<inline-formula><mml:math id="M335" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> source depletion.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Thresholds and time delays of the priming carbon flux effect</title>
      <p id="d1e4380">In our study, the NEE increased immediately (short time delay) after a PPT event, in accordance with H1. Moreover, the<?pagebreak page2378?> minimum size of a PPT event
needed to detect NEE change was as low as 0.25 <inline-formula><mml:math id="M336" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, in agreement with H2. We interpret that immediate daytime PPT-induced responses
in NEE and ER rates were dominated by heterotrophic respiration and assume that these microbial communities have evolved to take advantage of this
short-term water availability. Short-term responses of <inline-formula><mml:math id="M337" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 30 <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> have also been reported in studies that analyzed soil microorganism
activity through molecular and stable isotope techniques (Placella et al., 2012; Unger et al., 2010). Fungi and bacteria on the soil surface have the capability for water-induced re-activation within 1 to 72 <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> after a PPT event
(Placella et al., 2012). Immediate positive NEE increase observed in our study (Fig. A3) may have resulted from rapid activation of bacteria
displaying the highest activity 1 <inline-formula><mml:math id="M340" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> after wetting. Biological soil crusts (BSCs) are assemblages of microorganisms forming crusts on the soil and
rock surfaces (Belnap, 2003) common in arid lands. At our site, the BSC covers up to 70 % of plant interspaces in grazing-excluded conditions and
up to 30 % in overgrazed sites (Concostrina-Zubiri et al., 2014), with the dominance of Actinobacteria (e.g., actinomycetes) and cyanobacteria,
which are identified as rapid responders (Bowling et al., 2011).</p>
      <p id="d1e4431">The maximum priming NEE effect was identified under changes larger than 8 % in soil water content at 2.5 <inline-formula><mml:math id="M341" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>, previous dry soil, previous neutral NEE, and PPT events <inline-formula><mml:math id="M342" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 15 <inline-formula><mml:math id="M343" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>. These limits may be defined by several conditions, including (1) the largest and most intense events
did not completely infiltrate into the soil, forming abundant runoff and moderating the amount of water penetrating the soil profile at a similar
depth as that observed for large-size PPT events; (2) oxygen and <inline-formula><mml:math id="M344" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> diffusion limitation under high soil VWC dampened soil respiration;
(3) all soil aggregates are disrupted at medium soil VWC, likely providing no additional nutrient or <inline-formula><mml:math id="M345" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> substrate at higher VWCs (Bailey et al.,
2019; Lado-Monserrat et al., 2014; Homyak et al., 2018; Chen et al., 2019); and (4) a combination of any of these three. A linear relationship between
PPT event size, <inline-formula><mml:math id="M346" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M347" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula> (Fig. 2d) showed that there was not a substantial limitation of water infiltration
into the soil at shallow depths, discarding in some way the first condition, whereas the reduction in ER rates in nighttime NEE data after
<inline-formula><mml:math id="M348" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M349" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 12 % and daytime <inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> reductions under higher <inline-formula><mml:math id="M351" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">preVWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> support the second mechanism (Figs. 6
and A4).</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>The ER and GEE threshold and time delay difference</title>
      <p id="d1e4549">The smallest PPT events only stimulated ER rates, with
no apparent change observed in GEE (Fig. 3). Even a large PPT event of 20 <inline-formula><mml:math id="M352" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> recorded in May 2013 (Fig. 3) did not induce an increase
in GEE. In contrast, larger or consecutive PPT events that reached deeper soil profiles stimulated GEE (cumulative PPT <inline-formula><mml:math id="M353" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 40 <inline-formula><mml:math id="M354" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>). These
results also explain why the previous soil moisture and the change in soil moisture (2.5 <inline-formula><mml:math id="M355" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth) better explained <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">NEE</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> at the
respiration-dominated period rather than soil moisture at 15 <inline-formula><mml:math id="M357" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (Fig. 5); this confirms our notion that soil microorganism activity was
the source of the immediate <inline-formula><mml:math id="M358" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> efflux. In contrast, VWC at 15 <inline-formula><mml:math id="M359" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth was the second most important factor explaining the priming
NEE effect in the photosynthesis-dominated period. Additionally, the change in PPFD during the photosynthesis-dominated period positively affected the
priming effect (Fig. 6), meaning that cloudy conditions reduced carbon uptake rather than PPT and stimulated ecosystem respiration.</p>
      <p id="d1e4631">The low PPT threshold that stimulated ER agrees with results from other studies in arid ecosystems (and are even lower). PPT events as small
as 3 <inline-formula><mml:math id="M360" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> induced respiration of biological soil crusts (Kurc and Small, 2007), and PPT
events <inline-formula><mml:math id="M361" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M362" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> on a shortgrass steppe promoted net loss of <inline-formula><mml:math id="M363" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> (Parton et al., 2012). Moreover, Medina-Roldán
et al. (2013) at the same study site showed an increase of 36 % and 34 % of extractable
<inline-formula><mml:math id="M364" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, respectively, after a PPT event of 10 <inline-formula><mml:math id="M366" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>, which is indicative of soil
biological activity. However, the dominant species at our site, <italic>B. gracilis</italic>, was reported to respond to PPT events as small as 5 <inline-formula><mml:math id="M367" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>
(Sala and Lauenroth, 1982), which was the PPT threshold we were expecting. Instead, this study found that large or consecutive PPT events had to occur
before an effect on GEE was observed (Fig. 3). Nevertheless, we highlight that small PPT events in arid ecosystems that do not lead to <inline-formula><mml:math id="M368" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake
may alleviate stress after severe droughts, rehydrating plant tissues and helping plants to respond faster after larger PPT events (Sala and
Lauenroth, 1982; Aguirre-Gutiérrez et al., 2019; Thomey et al., 2011).</p>
      <p id="d1e4729">Causes of longer time delays in GEE than in ER are likely due to the delay between the PPT event and the infiltration of water to a given soil layer
(e.g., 15 <inline-formula><mml:math id="M369" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth; Fig. 2e) and the time spent for regrowing of new roots and leaves (Ogle and Reynolds, 2004). These processes promote
<inline-formula><mml:math id="M370" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> losses rather than <inline-formula><mml:math id="M371" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake in the early growing season (Huxman et al., 2004b; Delgado-Balbuena et al., 2019). In contrast, ER was primarily controlled by
soil moisture at shallow soil layers that moist immediately after any PPT event and may activate soil microorganisms just a few hours after soil
wetting as discussed above.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>Influence of event size and a priori conditions</title>
      <?pagebreak page2379?><p id="d1e4764">The magnitude of the priming effect was determined by the size of the PPT event and mainly by the <inline-formula><mml:math id="M372" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">VWC</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula>, as well as the previous condition
of the ecosystem (i.e., previous <inline-formula><mml:math id="M373" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> flux and previous soil VWC). These results agree with H3 that proposed the PPT event size and previous
conditions of the semiarid grassland would control the magnitude of the priming NEE effect. The previous VWC offers insight into the potential
dry–wet shock experienced by soil aggregates and microorganisms (Haynes and Swift, 1990) and thus accounts for nutrient and labile
<inline-formula><mml:math id="M374" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> accumulation in soil (Bailey et al., 2019).</p>
      <p id="d1e4794">Results indicated that larger <inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> effluxes were induced from a medium amount of PPT when the previous soil conditions were dry and had an initial
value of NEE <inline-formula><mml:math id="M376" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M377" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0. Several mechanisms can explain this result: (i) the accumulation of nutrients and labile <inline-formula><mml:math id="M378" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> into the soil (Schimel
and Bennet, 2004) because of the low activity of microorganisms (NEE <inline-formula><mml:math id="M379" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0) under dry soil (Homyak
et al., 2018), (ii) if soil VWC is maintained for an extended period above a threshold, then soil microbial activity exhausts labile <inline-formula><mml:math id="M380" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> sources
(Jarvis et al., 2007; Fierer and Schimel, 2002). Consequently, recalcitrant <inline-formula><mml:math id="M381" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> sources subjected to microbial decomposition decrease
mineralization rates (Van Gestel et al., 1993).</p>
</sec>
<sec id="Ch1.S4.SS5">
  <label>4.5</label><?xmltex \opttitle{Importance of the priming effect in the annual {$\protect\chem{C}$}~balance}?><title>Importance of the priming effect in the annual <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> balance</title>
      <p id="d1e4869">Our results do not support the hypothesis that a significant contribution of <inline-formula><mml:math id="M383" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> release from the priming effect decreases the net annual
<inline-formula><mml:math id="M384" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake of the semiarid grassland (H4). The contribution of these short-term <inline-formula><mml:math id="M385" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux events to annual <inline-formula><mml:math id="M386" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> balances accounted for
a considerable amount, but it was a small contribution compared to the ecosystem respiration flux, which was almost
3000 <inline-formula><mml:math id="M387" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Delgado-Balbuena et al., 2019). Notwithstanding the fact that its contribution is low (<inline-formula><mml:math id="M388" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 5 % of ecosystem respiration), it
is important considering that the annual <inline-formula><mml:math id="M389" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> balance (NEE) is a small fraction of the difference between ER and GEE. Thus, 5 % of
<inline-formula><mml:math id="M390" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> released represents up to 500 % of the net <inline-formula><mml:math id="M391" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake during an almost neutral year and may turn a <inline-formula><mml:math id="M392" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> sink ecosystem into a
net <inline-formula><mml:math id="M393" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> source.</p>
</sec>
<sec id="Ch1.S4.SS6">
  <label>4.6</label><title>Priming effect and climate change perspectives</title>
      <p id="d1e4986">The low <inline-formula><mml:math id="M394" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula> and PPT threshold for respiration suggests that almost all PPT events occurring in the semiarid grasslands will
produce <inline-formula><mml:math id="M395" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> efflux but will be limited by the characteristics of the PPT pattern and previous soil conditions at the site. Therefore, we expect
that small PPT events with previous dry conditions or long inter-event periods will limit the priming effect by maintaining the system below threshold
conditions. Moreover, consecutive PPT events or large PPT events should keep soil water content above a threshold that will promote <inline-formula><mml:math id="M396" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake by
photosynthesis, which in the long term will overcome <inline-formula><mml:math id="M397" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> loss from the priming effect. However, climate change scenarios forecast for the
semiarid grassland in Mexico a decrease in winter PPT and an increase in storms with larger inter-event periods, which are conditions for increasing
the amount of <inline-formula><mml:math id="M398" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> released by the priming effect (Arca et al., 2021; Darenova et al., 2017).</p>
      <p id="d1e5035">Further analysis of the effect of these PPT events on vegetation is necessary, since productivity will also depend on PPT event size and be
modulated by previous soil conditions. Additionally, it is likely that productivity will benefit more from accumulated PPT than respiration. Still,
more analyses of projected PPT scenarios are required to accurately forecast the contribution of the Birch effect to the <inline-formula><mml:math id="M399" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> balance under more
frequent droughts. In this sense, parameterizing a model like the T-D model will provide valuable information on more accurate <inline-formula><mml:math id="M400" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> effluxes from
the priming effect and how it will be affected by changes in precipitation pattern. Only after that will we be able to predict the course of the
semiarid grassland as a source or sink of <inline-formula><mml:math id="M401" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> under PPT pattern changes.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e5072">Previous soil water conditions and previous NEE were the most important factors controlling the priming effect in the semiarid grassland. The
precipitation amount had an important role in explaining the priming effect but only in the respiration-dominated period. Delays between change
responses at the deeper soil layer and regrowing processes could hide the relationship between precipitation and the priming effect during the
photosynthesis-dominated period. The importance of the priming effect in the carbon balance could be more relevant under forecasted changes in
precipitation patterns by increasing in both the frequency and intensity the dry–wet soil cycles. Further analysis of the effect of this change in
precipitation patterns on ecosystem productivity is necessary before we can make conclusions about changes in the carbon balance of the semiarid grassland.</p><?xmltex \hack{\clearpage}?>
</sec>

      
      </body>
    <back><app-group>

<?pagebreak page2380?><app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Ancillary figures</title>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S1.F7"><?xmltex \currentcnt{A1}?><?xmltex \def\figurename{Figure}?><label>Figure A1</label><caption><p id="d1e5089">The threshold-delay model (Ogle and Reynolds, 2004). <bold>(a)</bold> The magnitude of the increase in the response variable (<inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>, e.g., carbon flux, <inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:msub><mml:mi>y</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) is determined by the size of the PPT event and by the previous state of the response variable. The decreasing rate of the response following the stimulus is denoted by <inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula>. The low PPT threshold (<inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">L</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) indicates the minimum size of the PPT event to stimulate a response, and the upper PPT threshold (<inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">U</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) indicates PPT events that do not cause additional increments in the response variable. The time interval between the stimulus and the response is described by <inline-formula><mml:math id="M407" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>. <bold>(b)</bold> The response of the net ecosystem exchange (NEE), which is the balance between the gross ecosystem exchange (GEE) and ecosystem respiration (ER), varies in response to changes in GEE and ER. According to the T-D model, GEE and ER have different PPT thresholds (dotted band and mesh stand for effective PPT event size for ER and GEE, respectively), with ER responding to smaller-sized PPT events than GEE; therefore, small PPT events favor <inline-formula><mml:math id="M408" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> release, whereas large PPT events stimulate net <inline-formula><mml:math id="M409" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> uptake by the ecosystem. Differences in time responses between soil microorganisms and plants to soil wet-up led GEE and ER to differ in time delays (<inline-formula><mml:math id="M410" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>), with shorter time delays for ER than GEE (Huxman et al., 2004a). The hypothetical curve for NEE and its components were calculated, introducing arbitrary parameters in the T-D model equations of Ogle and Reynolds (2004).</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=256.074803pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f07.png"/>

      </fig>

<?xmltex \hack{\clearpage}?><?xmltex \floatpos{h!}?><fig id="App1.Ch1.S1.F8"><?xmltex \currentcnt{A2}?><?xmltex \def\figurename{Figure}?><label>Figure A2</label><caption><p id="d1e5193">Correlation matrix among all variables.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f08.png"/>

      </fig>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S1.F9"><?xmltex \currentcnt{A3}?><?xmltex \def\figurename{Figure}?><label>Figure A3</label><caption><p id="d1e5207">Dynamic of 0.5 h net ecosystem exchange (<inline-formula><mml:math id="M411" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) after a precipitation event of 8.12 <inline-formula><mml:math id="M412" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>. The arrow indicates the time of the PPT event occurrence.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f09.png"/>

      </fig>

<?xmltex \hack{\clearpage}?><?xmltex \floatpos{h!}?><fig id="App1.Ch1.S1.F10"><?xmltex \currentcnt{A4}?><?xmltex \def\figurename{Figure}?><label>Figure A4</label><caption><p id="d1e5257">The relationship between nighttime-NEE-derived ER and <bold>(a)</bold> the soil volumetric water content at 2.5 <inline-formula><mml:math id="M413" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M414" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M415" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>), <bold>(b)</bold> the soil volumetric water content at 15 <inline-formula><mml:math id="M416" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> depth (<inline-formula><mml:math id="M417" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">VWC</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>/</mml:mo><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula>), <bold>(c)</bold> the enhanced vegetation index (EVI), and (<bold>d</bold>) the air temperature (<inline-formula><mml:math id="M419" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M420" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>).</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://bg.copernicus.org/articles/20/2369/2023/bg-20-2369-2023-f10.png"/>

      </fig>

</app>
  </app-group><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e5367">The datasets used for this study are available at Zenodo <uri>https://doi.org/10.5281/zenodo.7379206</uri> (Delgado Balbuena, 2022).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e5376">The study was conceived by JDB, TA, HWL, and RV. JDB, TA, and CAAG obtained and processed eddy covariance data. JDB, TAR, and LFPM implemented the method and performed the data analyses. TAR and CAAG obtained and processed the enhanced vegetation index data. TA, HWL, LFPM, and RV helped to interpret the results. JDB, TA, HWL, and RV prepared the first draft, and all authors contributed to the discussion of the results and the revisions of the paper.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e5382">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><?xmltex \hack{\newpage}?><?xmltex \hack{\vspace*{13.7cm}}?><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e5390">Any opinions, findings, conclusions, and recommendations expressed in this material are those of the authors and do not necessarily reflect the views of their sponsoring agencies.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5399">The authors thank INIFAP for the facilities at the CENID Agricultura Familiar research site in Ojuelos, Jalisco, to carry out this study. Henry W. Loescher acknowledges the National Science Foundation (NSF) for ongoing support under the cooperative support agreement to Battelle.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e5404">This research has been supported by the Consejo Nacional de Ciencia y Tecnología (grant nos. CF 320641, CB 2008-01 102855, and CB 2013 220788), Consejo Nacional de Ciencia y Tecnología – Secretaría del Medio ambiente y Recursos<?pagebreak page2383?> Naturales (grant no. 108000), and the National Science Foundation (grant no. EF-1029808).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e5411">This paper was edited by Paul Stoy and reviewed by two anonymous referees.</p>
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