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  <front>
    <journal-meta><journal-id journal-id-type="publisher">BG</journal-id><journal-title-group>
    <journal-title>Biogeosciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1726-4189</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/bg-23-3807-2026</article-id><title-group><article-title>Diatom–environment relationships and limnological variability: an updated quantitative tool for palaeoclimatology on sub-Antarctic Macquarie Island</article-title><alt-title>Diatom–environment relationships and limnological variability</alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Selfe</surname><given-names>Caitlin A.</given-names></name>
          <email>caitlin.selfe@hrd.qut.edu.au</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Meredith</surname><given-names>Karina</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3635-1614</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>McDonough</surname><given-names>Liza</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7323-5108</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Shaw</surname><given-names>Justine</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Roberts</surname><given-names>Stephen J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff5">
          <name><surname>Saunders</surname><given-names>Krystyna M.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Securing Antarctica's Environmental Future, Queensland University of Technology, Brisbane, 4000, Australia</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Securing Antarctica's Environmental Future, Environment Research and Technology Group, Australian Nuclear Science and Technology Organisation, Lucas Heights, 2234, Australia</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>British Antarctic Survey, Cambridge, CB3 0ET, United Kingdom</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, 7004, Australia</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Australian Antarctic Division, Kingston, 7050, Australia</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Caitlin A. Selfe (caitlin.selfe@hrd.qut.edu.au)</corresp></author-notes><pub-date><day>11</day><month>June</month><year>2026</year></pub-date>
      
      <volume>23</volume>
      <issue>11</issue>
      <fpage>3807</fpage><lpage>3827</lpage>
      <history>
        <date date-type="received"><day>24</day><month>December</month><year>2025</year></date>
           <date date-type="rev-request"><day>19</day><month>January</month><year>2026</year></date>
           <date date-type="rev-recd"><day>19</day><month>April</month><year>2026</year></date>
           <date date-type="accepted"><day>24</day><month>April</month><year>2026</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2026 Caitlin A. Selfe et al.</copyright-statement>
        <copyright-year>2026</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026.html">This article is available from https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026.html</self-uri><self-uri xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d2e158">Sub-Antarctic Macquarie Island is ideally located for reconstructing past variations in Southern Hemisphere westerly wind strength. Diatoms are a valuable palaeolimnological tool on sub-Antarctic islands, providing a means to reconstruct past climate and environmental changes. Diatom communities are sensitive to changes in lake electrical conductivity (EC) linked to westerly wind–driven sea-spray inputs on Macquarie Island, and diatom–conductivity models have previously been used to infer past westerly wind variability. Here we present new diatom data from 52 lakes to assess diatom–environment relationships and develop an updated diatom–conductivity model for Macquarie Island. Seasonal and multi-year water chemistry and isotope data were analysed to assess temporal variability in hydrochemical processes and the influence of evaporation, ensuring the resulting diatom-conductivity model reflects external climatic drivers rather than local dynamics. Statistically robust transfer functions were developed for EC (bootstrapped <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M2" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.80, RMSEP <inline-formula><mml:math id="M3" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.40), while pH had weaker predictive performance. For EC, weighted averaging and maximum-likelihood approaches performed comparably, although the former showed reduced predictive power at high EC where low species turnover and nutrient collinearity affected accuracy. This quantitative-diatom model combined with understanding of hydrogeochemical processes provides an improved basis for reconstructing past Southern Hemisphere westerly wind variability, which can be applied in future palaeoclimate studies on Macquarie Island.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Australian Research Council</funding-source>
<award-id>SR200100005</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d2e195">The Southern Ocean region exerts a strong influence on Southern Hemisphere and global climates (Jones et al., 2016; Fogt and Marshall 2020). Sub-Antarctic islands are among the few landmasses located in the Southern Ocean, making them important sites for understanding the past and future role of the Southern Ocean on climate variability. The Southern Hemisphere westerly winds (SHW) are a major driver of Southern Hemisphere mid- to high-latitude climates, modulating ocean circulation, mid-latitude temperature and precipitation regimes, and the efficiency of the Southern Ocean carbon sink (Gillett et al., 2006; Le Quéré et al., 2009; Fletcher et al., 2021; Menviel et al., 2023; Thomas et al., 2025). Instrumental data show that in recent decades the SHW have intensified and shifted poleward in response to warming (Marshall, 2003; Fogt and Marshall, 2020). These changes have been linked to an increase in net outgassing of carbon dioxide (<inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) from deep-storage reservoirs in the Southern Ocean, with significant implications for future atmospheric <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> levels and global temperatures (Goyal et al., 2021; Nicholson et al., 2022; Mongwe et al., 2024; Olivier and Haumann, 2025). Understanding long-term SHW variability is key to assessing the impacts of SHW dynamics under future climate warming scenarios.</p>
      <p id="d2e220">Diatoms are highly sensitive to environmental changes and are widely used as palaeolimnological proxies to infer climate and environmental changes (Roberts et al., 2000; Verleyen et al., 2004; Sterken et al., 2008; Recasens et al., 2015; Liao et al., 2020; Peng et al., 2022; Deng et al., 2025). Diatoms are well established as indicators of salinity and ionic composition, forming the basis of numerous diatom–salinity or -conductivity transfer functions across a range of environments (Gasse et al., 1997; Verleyen et al., 2003; Volik et al., 2017; Maslennikova, 2020; Farqan et al., 2025). These approaches have been successfully applied in diverse settings demonstrating the reliability of diatom assemblages for reconstructing past hydrochemical and environmental change.</p>
      <p id="d2e223">Previous work on sub-Antarctic Islands has demonstrated that aquatic diatom communities are significantly influenced by changes in salinity (inferred from electrical conductivity, EC), allowing quantitative diatom-conductivity models to be developed (Gremmen et al., 2007; Saunders et al., 2009, 2015, 2018; Perren et al., 2020, 2025; Van Nieuwenhuyze, 2020). On sub-Antarctic islands, lake water salinity changes are largely controlled by wind-driven sea spray aerosol (SSA) inputs, via both wet and dry deposition, with increased inputs occurring when winds are stronger and vice versa (Evans, 1970; Buckney and Tyler, 1974; Saunders et al., 2009, 2015; Humphries et al., 2021). Based on this, diatom-conductivity transfer functions have been used to infer past Holocene SHW intensity on Macquarie Island (Saunders et al., 2018), Marion Island (Perren et al., 2020) and in southern South America (Perren et al., 2025). These relationships are understood to reflect longer-term, integrated hydrogeochemical and ecological responses to persistent wind-driven sea-spray inputs, rather than event-scale meteorological forcing.</p>
      <p id="d2e226">Earlier studies on Macquarie Island have analysed diatom-environment relationships (McBride, 2009; Saunders et al., 2009) and their application as palaeoenvironmental and climate proxies (Keenan, 1995; Saunders et al., 2013, 2018; Deng et al., 2025). However, from the late 1900s to early 2000s overgrazing from increasing invasive rabbit populations (up to 150 000 individuals estimated from 2005–2006) resulted in widespread ecosystem degradation, including erosion, vegetation loss, and altered organic inputs into lakes (Scott and Kirkpatrick, 2008; Terauds, 2009). This affected aquatic ecosystems and diatom diversity (Marchant et al., 2011; Saunders et al., 2013). The Macquarie Island Pest Eradication Programme successfully eradicated all invasive vertebrates (principally rabbits) from the island in 2011, triggering substantial ecosystem recovery (Springer, 2018; Fitzgerald et al., 2021). Although direct limnological data to assess ecosystem recovery of individual lakes is not available, widespread vegetation recovery following early efforts of the eradication programme in 2010–2011 provides strong evidence that ecosystem processes across the island are no longer characterised by extreme disturbance (Shaw et al., 2011; Springer, 2018; Fitzgerald et al., 2021). This is expected to have decreased catchment erosion and sediment and nutrient delivery into lakes relative to the peak disturbance period, resulting in post-eradication (recovering) ecosystems.</p>
      <p id="d2e230">Reassessing diatom–environment relationships under current post-eradication conditions is necessary, because earlier studies were conducted during a period of vertebrate-induced disturbance rather than under near-natural conditions (Saunders et al., 2013). Developing new diatom models based on post-eradication conditions may better represent pre-invasion baseline communities, improving the accuracy and ecological relevance of palaeolimnological reconstructions. Furthermore, incorporating revised taxonomy and newly identified species will enhance the model's ecological resolution and predictive performance.</p>
      <p id="d2e233">Understanding the processes that drive lake water chemistry, such as precipitation, evaporation, groundwater inputs, and nutrient cycling, and how they vary across temporal and spatial scales is essential when interpreting diatom–environmental relationships. Meredith et al. (2022) defined lake hydrogeochemical processes across Macquarie Island showing that dominant processes vary locally, and lakes can be classified as predominantly influenced by SSAs, catchment processes (i.e., with greater water-rock interaction), or precipitation (i.e., more dilute lake waters). Sea-spray-influenced lakes occur near the west coast and on the western edge on the Macquarie Island plateau, where exposure to the SHW is greatest. In contrast, catchment-influenced lakes with higher terrestrial ion concentrations are found at lower elevations, and rainfall-influenced lakes with low ion concentrations occur at higher elevations. This hydrogeochemical framework supports the hypothesis that for lakes near the west coast, including those on the western edge of the plateau, EC-related diatom variation on Macquarie Island primarily reflects SHW-driven sea-spray inputs rather than local hydrological or geochemical controls.</p>
      <p id="d2e236">While present day water chemistry provides valuable insight into spatial variability, it is necessary to quantify temporal variability in hydrogeochemical processes, particularly evaporation, to assess how seasonal, interannual, and longer-term changes modify ion concentrations in lakes, including those derived from SSA. Establishing seasonal and multi-year lake water hydrogeochemical datasets will enhance confidence in proxy interpretations and form a foundation for long-term monitoring of Macquarie Island lakes. Such research is rarely applied to develop ecological transfer functions particularly in such remote, isolated settings, and has not yet been undertaken on other sub-Antarctic islands. These factors highlight the importance of this work for understanding how sub-Antarctic Island ecosystems will respond to future climate and environmental changes, particularly given the rapid ecological shifts in response to climate that are already documented across the region (Le Roux and McGeoch, 2008; Lee and Chown, 2016; Nel et al., 2023).</p>
      <p id="d2e239">Here, we present new data from lakes on Macquarie Island quantifying post-pest eradication relationships between surface-sediment diatom communities and environmental conditions. Using comprehensive water chemistry datasets from 2018 and 2022–2023, we examine seasonal and interannual variability to develop updated diatom–environment transfer functions. This integrated approach strengthens the application of diatom-based proxies and provides a first step towards long-term monitoring of sub-Antarctic lake systems by contributing to baseline data and establishing an analytical framework to track ecological and biogeochemical change. These transfer functions will be applied in future studies to reconstruct past Holocene climate variability on Macquarie Island.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods and Materials</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Study area: Macquarie Island</title>
      <p id="d2e257">Macquarie Island (54°50<sup>′</sup> S, 158°85<sup>′</sup> E) is a small sub-Antarctic island (128 <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) located in the Southern Ocean just north of the polar front, 1200 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> south-west of New Zealand and 1300 <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> from the Antarctic continent (Fig. 1). It is one of the few landmasses within the Polar Frontal Zone and modern core SHW belt (50–55°S; Fig. 1), making it ideally suited to study past and current changes in the SHW, temperature, and precipitation. It has a harsh, cool, wet, oceanic climate with low seasonality and high wind velocities throughout the year. Together, these represent the influence the SHW have on climate in the region (Selkirk et al., 1990). The SHW prevail almost exclusively from the west and north-west with a mean annual wind speed of 35 <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and gusts reaching 185 <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (between 1948–2025; BOM 2025). The continual dominance of the SHW drive environmental and ecosystems responses on a west-to-east gradient across the island (Chau et al., 2019; Meredith et al., 2022), including the deposition and accumulation of wind-blown inputs such as sea spray and minerogenic aerosols (Buckney and Tyler, 1974; Saunders et al., 2009). Mean annual temperature ranges from 3.1–6.6 <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">°</mml:mi><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>, and the island experiences high annual rainfall of <inline-formula><mml:math id="M14" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1000 <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M16" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 317 <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">rainy</mml:mi><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="normal">days</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (between 1948–2025; BOM 2025). Rainfall has increased in recent decades with a higher frequency of intense rainfall events, mostly occurring during winter, which are then accompanied by drier, windier summers (Andersen et al., 2009; Kong et al., 2025). Persistent cloud cover over the island results in low light levels and sunshine hours per day (average 2.4 <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> from 1948–2022; BOM, 2025).</p>

      <fig id="F1"><label>Figure 1</label><caption><p id="d2e403">Location of Macquarie Island in the Southern Ocean and mean annual wind speeds around the Southern Hemisphere (ERA5 reanalysis data 1960–2025), showing that the island lies within the modern core Southern Hemisphere westerly wind belt (50–55° S).</p></caption>
          <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f01.png"/>

        </fig>

      <p id="d2e412">Macquarie Island is geologically unique, being the only location worldwide where an intact marine ophiolite sequence of oceanic crust and upper mantle is exposed above sea level (Davis, 1987). The island is composed mostly of pillow basalts with interspersed flows of massive basalt (Selkirk et al., 1990). Dolerite, ultrabasics and intrusives are also present but are confined to the northern third of the island (Mawson, 1943). As widespread glaciation did not occur during the Last Glacial Maximum (26–20 <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ka</mml:mi></mml:mrow></mml:math></inline-formula>), marine, periglacial and subaerial erosional, rather than glacial processes, shaped the island as well as lake formation and ontogeny. The island is fringed by a low coastal terrace leading to steep-sided slopes (20–40°) that rise to form the island plateau sitting at <inline-formula><mml:math id="M20" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 200–400 <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> a.s.l. (Selkirk et al., 1990; McBride and Selkirk, 1998).</p>

      <fig id="F2" specific-use="star"><label>Figure 2</label><caption><p id="d2e441">Maps showing lake sites across Macquarie Island, <bold>(a)</bold> Diatom surface sediment sites (coastal sites were originally sampled by Saunders et al. (2009); <bold>(b)</bold> Lake water chemistry sites. Colours show lake types, based on dominate hydrogeochemical processes, identified by Meredith et al. (2022). Black dots indicate that the site is also included in the diatom dataset.</p></caption>
          <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f02.png"/>

        </fig>

      <p id="d2e456">The island has numerous shallow and deep lakes and ponds across the plateau and coastal terrace (Fig. 2). High accumulation of surface water and a high water-table at or very near the surface lead to the formation of extensive mires across the island (Löffler, 1984). While lake edges can form thick ice cover during winter, complete freezing of the lakes is not typically observed (Evans, 1970; Selkirk-Bell and Selkirk, 2013). The island is vegetated by bryophytes, tussock grass, herbs and sedges, with no shrub or tree species present (Selkirk et al., 1990).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Data collection</title>
      <p id="d2e467">Surface sediments and water samples were collected from lakes on Macquarie Island during the 2022–2023 austral summer (referred to as 2022). Sites were selected to replicate those sampled in 2018 that were published by Meredith et al. (2022).</p>
      <p id="d2e470">Lake surface sediments were collected from 30 plateau (inland) sites for diatom analyses (lake ID <inline-formula><mml:math id="M22" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> LK), representing conditions more than 10 years post-rabbit and rodent eradication. Surface sediments (top 2 <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>) were collected from each site using a long-handled scoop from <inline-formula><mml:math id="M24" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> water depth. This method for sediment collection was selected for its logistical feasibility. Sediment mixing was minimised by visually assessing sampling depth and subsampling where necessary to retain only the upper <inline-formula><mml:math id="M26" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>. Sediments were generally well consolidated and remained intact during collection. Based on available lead-210 (<inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn mathvariant="normal">210</mml:mn></mml:msup><mml:mi mathvariant="normal">Pb</mml:mi></mml:mrow></mml:math></inline-formula>) chronologies from Macquarie Island lake cores, this interval represents approximately 10 years of accumulation (Saunders et al., 2013; Saunders et al., 2018), comparable to surface sediment sampling approaches used in previous studies (e.g. Saunders et al., 2009). An additional 17 coastal and five plateau sites sampled in 2006 (lake ID <inline-formula><mml:math id="M29" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> S; Saunders et al., 2009) were included in the diatom dataset to extend the EC and nutrient gradients of the updated dataset, totalling 52 samples (Fig. 2a). Two lakes were replicated in the 2006 and 2022 seasons (S9 <inline-formula><mml:math id="M30" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> LK40, S18 <inline-formula><mml:math id="M31" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> LK2; Fig. 2a).</p>
      <p id="d2e552">Lake water general parameters were measured in-situ at each site, including temperature, EC, dissolved oxygen (DO), and pH using a YSI ProQuatro Multiparameter Meter, with calibration performed prior to every sampling trip. DO was calibrated in water-saturated air following YSI manufacturer protocols. EC was calibrated using a 1413 <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> standard solution, and pH was calibrated using a three-point procedure with pH 4.0, 7.0, and 10.0 buffer solutions. Water samples were collected at all diatom sampling sites to measure total oxidised nitrogen (TON), phosphate (<inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>), and silica (Si). Additional water samples were collected from 40 plateau sites for water chemistry analysis (Fig. 2b), including major ions and stable water isotopes (oxygen <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> and hydrogen <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>). Each site was sampled three times across the 2022–2023 season (November, December to January, and February). All water samples were collected from <inline-formula><mml:math id="M36" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> below the water surface and were filtered in-situ with 0.45 <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> polyethersulpone filters into High Density Poly-Ethylene (HDPE) bottles following the method described by Meredith et al. (2009). Water samples were refrigerated (4 <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">°</mml:mi><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>) until analysis.</p>
      <p id="d2e660">Major ions, and oxygen (<inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) and hydrogen (<inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>) stable isotopes were analysed at the Australian Nuclear Science and Technology Organisation (ANSTO). Cations and anions were analysed using inductively coupled plasma-atomic emission spectrometry (ICP-AES). <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> stable isotopes were analysed with a Picarro L2130-i Cavity Ring-Down Spectrometer. Values were reported as per mill (‰) deviations relative to the international standard V-SMOW (Vienna Standard Mean Ocean Water), with a reproducible precision of <inline-formula><mml:math id="M44" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.2 ‰ and <inline-formula><mml:math id="M45" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.0 ‰, respectively.</p>
      <p id="d2e731">Nutrient data from 2006 samples (filtered at 0.45 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) measured soluble reactive phosphate (SRP), TON (nitrate <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M48" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> nitrite <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>), and silicate (Si) using an Alpkem Autoanalyser (Continuous Flow Solution Analyser), representing the operationally defined dissolved inorganic (and therefore readily bioavailable) fractions of total N, P, and Si. In contrast, the 2022 dataset measured TON, <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, and Si ions using ICP-AES at ANSTO on filtered, undigested waters, with results reported as the corresponding inorganic species and concentrations consistently at or near detection limits. Despite methodological differences, the two approaches yield consistently low and broadly comparable concentrations in the two replicate lakes across sampling trips: for S9/LK40, <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations were 0.002 <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (autoanalyser) and <inline-formula><mml:math id="M53" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.01 <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (ICP-AES), and TON concentrations were 0.006 <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (autoanalyser) and <inline-formula><mml:math id="M56" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.06 <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (ICP-AES); for S18/LK2, <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> concentrations were 0.004 <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (autoanalyser) and <inline-formula><mml:math id="M60" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.01 <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (ICP-AES), and TON concentrations were 0.005 <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (autoanalyser) and <inline-formula><mml:math id="M63" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.06 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (ICP-AES). Furthermore, if the 2022 analyses targeted the same reactive fractions measured in 2006, the results would still fall below or close to detection limits.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Diatom preparation and identification</title>
      <p id="d2e1004">Diatom preparation followed methods described by McBride (2009). Cleaned diatom solutions were mounted onto slides using Norland Optical Adhesive 61. At least 300–400 frustules were counted per sample, using Differential Interference Contrast (DIC) and oil immersion at 1000<inline-formula><mml:math id="M65" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> magnification on a Zeiss Axioskope microscope, mounted with a TOUPTEK camera (U3CMOS). Species identification was primarily based on sub-Antarctic taxonomy described in Van de Vijer et al. (2002); Sterken et al. (2015); Sabbe et al. (2019); and Van de Vijver (2019). Species were photographed and documented (see Supplement for an illustrated species catalogue).</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Statistical analyses</title>
<sec id="Ch1.S2.SS4.SSS1">
  <label>2.4.1</label><title>Water chemistry</title>
      <p id="d2e1029">The lake water chemistry dataset was comprised of in-situ general parameters, major ion concentrations and <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> values from 2018 (Meredith et al., 2022) and 2022 (this study) to understand temporal variation across the island. Data from 2018 (January to February) are referred to as sampling event 1 (E1) and sampling from the 2022 season as E2 (November), E3 (December to January), and E4 (February). Shapiro–Wilk tests showed that isotope data were normally distributed (<inline-formula><mml:math id="M68" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M69" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.05), whereas general parameters and ion concentrations deviated significantly from normality (<inline-formula><mml:math id="M70" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M71" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.05). Consequently, parametric tests (ANOVA, <inline-formula><mml:math id="M72" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>-test, Tukey's HSD) were applied to normally distributed isotope data, and non-parametric tests (Kruskal–Wallis, pairwise Wilcoxon) to non-normally distributed general parameters ion data. Principal Component Analysis (PCA) with <inline-formula><mml:math id="M73" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>-score standardised data was performed to explore relationships between variables and assess the consistency of lake types identified by Meredith et al. (2022; Fig. 2b).</p>
</sec>
<sec id="Ch1.S2.SS4.SSS2">
  <label>2.4.2</label><title>Diatom model</title>
      <p id="d2e1109">Diatom inference models were developed using diatom and environmental data collected from 2006 and 2022. Ordination methods were used to describe variation in the diatom dataset, explore diatom-environment relationships, and identify unique variance explained by environmental variables. Environmental variables included were EC, temperature, DO, pH, TON, <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, and Si, with mean 2022 values used. Additional major ions were not included as these data were not available for 2006 sites. Water depth was not included as a variable as all sediment samples were collected within a narrow range of 0–1.5 <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> water depth, rendering ecological changes in depth negligible. Additionally, water depth is often regarded as a composite variable that acts as a surrogate for complex environmental gradients (e.g., habitat type, light, salinity, nutrients, oxygen, and taphonomy) that are largely unknown and unquantified, and therefore its inclusion can lead to spurious and misleading results (Birks et al., 1998; Juggins, 2013). Weighted Averaging (WA) was applied to determine species ecological optima and tolerance. Together WA, Weighted Averaging Partial Least Squares (WAPLS), and Maximum Likelihood (ML) models were used to develop diatom transfer functions, with cross-validation used to assess model robustness.</p>
      <p id="d2e1136">The relative abundance of each diatom species in each sample was calculated as the percentage of the total number of frustules counted per sample. Species occurring at <inline-formula><mml:math id="M76" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 1 % relative abundance were excluded from the dataset. A full species list can be found in the Supplement. Nutrient values that were below the limit of detection were substituted with the respective detection limit value (<inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M78" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.01 <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, Si <inline-formula><mml:math id="M80" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, TON <inline-formula><mml:math id="M82" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.06 <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Environmental variables were screened for skewness, with temperature, EC, <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, Si, and TON <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:mi>log⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> transformed.</p>
      <p id="d2e1269">PCA was performed on transformed environmental data to identify the primary gradients of environmental variation across sites. Detrended Correspondence Analysis (DCA) with detrending by segments and downweighting of rare species was performed on untransformed species data to determine whether species distributions were linear or unimodal. As the DCA axis 1 gradient length (8.2 deviation units) was <inline-formula><mml:math id="M86" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 4, unimodal ordination methods were deemed appropriate (Ter Braak and Prentice, 1988). Species data were <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:mi>log⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> transformed for remaining analysis.</p>
      <p id="d2e1297">A series of Canonical Correspondence Analyses (CCA) were then performed with forward selection, and scaling focused on inter-species distances, biplot scaling and downweighting of rare species. Variance Inflation Factors (VIF) of environmental variables were used to assess collinearity. As no variables had a VIF <inline-formula><mml:math id="M88" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 10, none were excluded. A full CCA, with all environmental variables included, was first performed to quantify the total amount of species–environment variance explained by the full set of variables. A series of independent and partial CCAs with variance partitioning were performed to constrain analyses, assess the relative explanatory power, and assess the unique and shared variance contributions of each variable. Individual CCAs, of each variable alone, estimate the marginal (unconstrained) explanatory power (i.e., how much variation a single variable explains when considered alone, without accounting for correlations with other variables). Partial CCAs assess the unique (conditional) contribution of each environmental variable after statistically controlling for all remaining variables. This analysis isolates the variance uniquely attributable to each predictor and identifies variables whose explanatory power is driven by covariation with others. Finally, variance partitioning was used to decompose the total explained variation into unique and shared fractions, allowing assessment of how much variation was due to individual predictors versus overlapping environmental gradients. Permutation test results (<inline-formula><mml:math id="M89" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M90" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.05), CCA coefficients and lambda ratios (<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo></mml:mrow></mml:msub><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) of the first constrained eigenvalue (<inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) to the second unconstrained eigenvalue (<inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) were used to identify the environmental variables most appropriate for quantitative inference models. As a guide, high <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratios are necessary for a variable to have enough explanatory power to be included in quantitative inference models (Ter Braak and Prentice, 1988; Juggins, 2013). All ordination analyses were performed using the <italic>vegan</italic> package version 2.7–1 (Oksanen et al., 2013) in R (R Core Team, 2024).</p>
      <p id="d2e1389">ML and iterations of inverse (<sub>INV</sub>) and classical (<sub>CLA</sub>) WA models with and without tolerance downweighing, and WAPLS with up to five components were assessed to determine the best performing transfer functions. These methods were applied because they capture different aspects of species–environment relationships: WA provides a simple unimodal estimator; WAPLS allows more complex responses through latent components; and ML emphasises taxa with narrow ecological tolerances. Using multiple approaches therefore offers complementary strengths and helps identify the most reliable and robust model through cross-validation. All models were performed with bootstrapping and 100 iterations. Model <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, bootstrapped <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>), root mean square error (RMSE) and root mean square error of prediction (RMSEP) values were used to assess performance. RMSEP and <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> performance were favoured over <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and RMSE. RMSEP between WAPLS components were also used to assess overfitting. WA and WAPLS-1 results are often similar as WAPLS is built upon on the same weighted-averaging framework as WA (ter Braak and Juggins, 1993). When this was the case and WAPLS components did not improve performance, WA was favoured as the most parsimonious model. Software program C2 version 1.8 (Juggins, 2003) was used to develop all transfer functions.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Lake water chemistry</title>
      <p id="d2e1487">Analyses of 40 plateau lakes on Macquarie Island showed that lake water general parameters (EC, pH and DO), and nutrients, did not vary significantly (<inline-formula><mml:math id="M103" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M104" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.01) across the 2022 sampling events (E2–4; Table 1). Temperature varied, being significantly lower in E2 compared to E3 and E4 (<inline-formula><mml:math id="M105" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M106" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.01). Lakes were moderately acidic (pH 5.7) to alkaline (pH 9.14). Mean EC ranged from 126–261 <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, with a decrease in EC from west to east across the island. Lakes were oxic (DO <inline-formula><mml:math id="M108" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 8.64–12.61 <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and oligotrophic, with <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> and TON concentrations under or close to detection limits (<inline-formula><mml:math id="M111" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 0.01–0.02 <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M113" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.06–0.1 <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, respectively). Similarly, comparison with data from plateau lakes sampled in 2018 showed no significant difference (<inline-formula><mml:math id="M115" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M116" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.01) across all lake water general parameters, excluding temperature, indicating generally stable conditions in plateau lakes across years. However, a comparison between plateau lakes measured in 2022 and coastal lakes in 2006 did show significant differences (<inline-formula><mml:math id="M117" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M118" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.01). Coastal sites in 2006 were generally eutrophic with higher nutrient ranges (TON <inline-formula><mml:math id="M119" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.007–4.636 <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M122" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.1–9.9 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), and higher EC (406–1482 <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), while temperature, DO, pH, Si were not significantly different (<inline-formula><mml:math id="M125" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M126" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.01) (Table 1; see Table S1 and S2 in the Supplement for full results).</p>

<table-wrap id="T1" specific-use="star"><label>Table 1</label><caption><p id="d2e1757">Summary of lake water general parameters and nutrient data. Temp. <inline-formula><mml:math id="M127" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> temperature, DO <inline-formula><mml:math id="M128" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> dissolved oxygen, EC <inline-formula><mml:math id="M129" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> electrical conductivity, Si <inline-formula><mml:math id="M130" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> silicate, <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M132" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> phosphate, TON <inline-formula><mml:math id="M133" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> total oxidised nitrogen.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Temp.</oasis:entry>
         <oasis:entry colname="col3">DO</oasis:entry>
         <oasis:entry colname="col4">EC</oasis:entry>
         <oasis:entry colname="col5">pH</oasis:entry>
         <oasis:entry colname="col6">Si</oasis:entry>
         <oasis:entry colname="col7">TON</oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M134" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(<inline-formula><mml:math id="M135" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">°</mml:mi><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M136" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M137" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">s</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6">(<inline-formula><mml:math id="M138" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">(<inline-formula><mml:math id="M139" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col8">(<inline-formula><mml:math id="M140" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">2022</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mean</oasis:entry>
         <oasis:entry colname="col2">8.7</oasis:entry>
         <oasis:entry colname="col3">11.59</oasis:entry>
         <oasis:entry colname="col4">188</oasis:entry>
         <oasis:entry colname="col5">7.03</oasis:entry>
         <oasis:entry colname="col6">0.648</oasis:entry>
         <oasis:entry colname="col7">0.06</oasis:entry>
         <oasis:entry colname="col8">0.00467</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Min</oasis:entry>
         <oasis:entry colname="col2">6.4</oasis:entry>
         <oasis:entry colname="col3">8.69</oasis:entry>
         <oasis:entry colname="col4">135</oasis:entry>
         <oasis:entry colname="col5">5.65</oasis:entry>
         <oasis:entry colname="col6">0.100</oasis:entry>
         <oasis:entry colname="col7">0.06</oasis:entry>
         <oasis:entry colname="col8">0.00326</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Max</oasis:entry>
         <oasis:entry colname="col2">16.1</oasis:entry>
         <oasis:entry colname="col3">12.95</oasis:entry>
         <oasis:entry colname="col4">267</oasis:entry>
         <oasis:entry colname="col5">9.15</oasis:entry>
         <oasis:entry colname="col6">4.333</oasis:entry>
         <oasis:entry colname="col7">0.10</oasis:entry>
         <oasis:entry colname="col8">0.02391</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">E1 mean (<inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 39)</oasis:entry>
         <oasis:entry colname="col2">7.6</oasis:entry>
         <oasis:entry colname="col3">12.47</oasis:entry>
         <oasis:entry colname="col4">188</oasis:entry>
         <oasis:entry colname="col5">7.02</oasis:entry>
         <oasis:entry colname="col6">0.767</oasis:entry>
         <oasis:entry colname="col7">0.06</oasis:entry>
         <oasis:entry colname="col8">0.00568</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">E2 mean (<inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 37)</oasis:entry>
         <oasis:entry colname="col2">9.1</oasis:entry>
         <oasis:entry colname="col3">11.94</oasis:entry>
         <oasis:entry colname="col4">197</oasis:entry>
         <oasis:entry colname="col5">7.03</oasis:entry>
         <oasis:entry colname="col6">0.611</oasis:entry>
         <oasis:entry colname="col7">0.06</oasis:entry>
         <oasis:entry colname="col8">0.00414</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">E3 mean (<inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 39)</oasis:entry>
         <oasis:entry colname="col2">9.6</oasis:entry>
         <oasis:entry colname="col3">10.48</oasis:entry>
         <oasis:entry colname="col4">177</oasis:entry>
         <oasis:entry colname="col5">7.05</oasis:entry>
         <oasis:entry colname="col6">0.515</oasis:entry>
         <oasis:entry colname="col7">0.06</oasis:entry>
         <oasis:entry colname="col8">0.00351</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">2018 (<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 40)</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mean</oasis:entry>
         <oasis:entry colname="col2">9.4</oasis:entry>
         <oasis:entry colname="col3">10.95</oasis:entry>
         <oasis:entry colname="col4">153</oasis:entry>
         <oasis:entry colname="col5">7.35</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Min</oasis:entry>
         <oasis:entry colname="col2">6.8</oasis:entry>
         <oasis:entry colname="col3">8.56</oasis:entry>
         <oasis:entry colname="col4">101</oasis:entry>
         <oasis:entry colname="col5">5.99</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Max</oasis:entry>
         <oasis:entry colname="col2">15.8</oasis:entry>
         <oasis:entry colname="col3">12.64</oasis:entry>
         <oasis:entry colname="col4">292</oasis:entry>
         <oasis:entry colname="col5">9.21</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col8">2006 (plateau) (<inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 5) </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mean</oasis:entry>
         <oasis:entry colname="col2">6.4</oasis:entry>
         <oasis:entry colname="col3">11.59</oasis:entry>
         <oasis:entry colname="col4">192</oasis:entry>
         <oasis:entry colname="col5">6.92</oasis:entry>
         <oasis:entry colname="col6">0.047</oasis:entry>
         <oasis:entry colname="col7">0.00564</oasis:entry>
         <oasis:entry colname="col8">0.0070</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Min</oasis:entry>
         <oasis:entry colname="col2">5.5</oasis:entry>
         <oasis:entry colname="col3">11.35</oasis:entry>
         <oasis:entry colname="col4">164</oasis:entry>
         <oasis:entry colname="col5">6.35</oasis:entry>
         <oasis:entry colname="col6">0.003</oasis:entry>
         <oasis:entry colname="col7">0.00004</oasis:entry>
         <oasis:entry colname="col8">0.0013</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Max</oasis:entry>
         <oasis:entry colname="col2">7.4</oasis:entry>
         <oasis:entry colname="col3">11.80</oasis:entry>
         <oasis:entry colname="col4">224</oasis:entry>
         <oasis:entry colname="col5">7.46</oasis:entry>
         <oasis:entry colname="col6">0.092</oasis:entry>
         <oasis:entry colname="col7">0.02449</oasis:entry>
         <oasis:entry colname="col8">0.0155</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col8">2006 (coastal) (<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 17) </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mean</oasis:entry>
         <oasis:entry colname="col2">8.4</oasis:entry>
         <oasis:entry colname="col3">11.32</oasis:entry>
         <oasis:entry colname="col4">889</oasis:entry>
         <oasis:entry colname="col5">7.19</oasis:entry>
         <oasis:entry colname="col6">0.719</oasis:entry>
         <oasis:entry colname="col7">1.23331</oasis:entry>
         <oasis:entry colname="col8">1.124</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Min</oasis:entry>
         <oasis:entry colname="col2">6.0</oasis:entry>
         <oasis:entry colname="col3">9.17</oasis:entry>
         <oasis:entry colname="col4">406</oasis:entry>
         <oasis:entry colname="col5">5.50</oasis:entry>
         <oasis:entry colname="col6">0.074</oasis:entry>
         <oasis:entry colname="col7">0.02430</oasis:entry>
         <oasis:entry colname="col8">0.007</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Max</oasis:entry>
         <oasis:entry colname="col2">13.1</oasis:entry>
         <oasis:entry colname="col3">14.43</oasis:entry>
         <oasis:entry colname="col4">1482</oasis:entry>
         <oasis:entry colname="col5">8.13</oasis:entry>
         <oasis:entry colname="col6">2.706</oasis:entry>
         <oasis:entry colname="col7">9.89000</oasis:entry>
         <oasis:entry colname="col8">4.636</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <fig id="F3" specific-use="star"><label>Figure 3</label><caption><p id="d2e2590">Box and whisker plots showing the range and mean of 2018 and 2022 lake water major ions <bold>(a)</bold> Cl and Na; <bold>(b)</bold> <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Br, Ca, Mg, K, <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SiO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Fe, F, and Al; and <bold>(c)</bold> stable water isotopes <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
          <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f03.png"/>

        </fig>

      <p id="d2e2658">Major ion analysis of the 40 plateau lakes showed that, although dilute in concentration, Cl (1.1–3.7 <inline-formula><mml:math id="M151" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and Na (0.9–2.6 <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) dominate the ionic composition of all lake waters (Fig. 3; see Table S3 for full cation and anion results). All lakes showed similar ionic ratios to seawater for <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Cl, Mg, and Na, suggesting a marine origin. Seawater ionic ratios diverged for K, Ca and F for some lakes, while <inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SiO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was higher in all lakes, suggesting additional sources for these ions (Fig. 4).</p>

      <fig id="F4"><label>Figure 4</label><caption><p id="d2e2719">Scholler plot comparing the ionic composition (<inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Cl, Mg, Na, K, Ca, F and <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SiO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) of Macquarie Island lake waters and seawater (red line), categorised into sampling years 2018 (black lines) and 2022 (grey lines).</p></caption>
          <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f04.png"/>

        </fig>

      <p id="d2e2750">Statistical analyses showed no significant (<inline-formula><mml:math id="M157" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M158" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.005) differences in major ion concentrations across 2022 sampling events (E2–4). Broader changes were detected between 2018 and 2022, with Cl, <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Br, and Mg all showing significantly higher mean concentrations (<inline-formula><mml:math id="M160" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M161" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.005) in 2018 compared to all 2022 sampling events (E2–4). Fe, Na, K, Ca, F, <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SiO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and Al did not significantly vary (<inline-formula><mml:math id="M163" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M164" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.005) between sampling events. All ions that show significant variation (<inline-formula><mml:math id="M165" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M166" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.005) have predominantly marine sources.</p>

      <fig id="F5" specific-use="star"><label>Figure 5</label><caption><p id="d2e2834">Principal Component Analysis (PCA) of Macquarie Island lake waters, showing the relationships between major ions and environmental parameters. Lakes are coloured by lake type, showing that lakes cluster based on the dominate geochemical processes identified by Meredith et al. (2022). Dist. west coast <inline-formula><mml:math id="M167" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> distance from the west coast (<inline-formula><mml:math id="M168" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>), Conduct <inline-formula><mml:math id="M169" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> electrical conductivity.</p></caption>
          <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f05.png"/>

        </fig>

      <p id="d2e2865">A PCA shows the relationship between lake water chemistry parameters, with samples grouped by lake type and sampling year (Fig. 5). Together, PC1 and PC2 captured 53 % of the total variance in the dataset. PC1 represents a salinity and sea-spray gradient with variability in EC, distance from the west coast, Na, Cl, Br, Ca, Mg, and K captured. PC2 represents an altitude and terrestrial ion gradient with variability in elevation, temperature, <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SiO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, Ca, Fe, and F captured. Lakes cluster according to environmental processes (groups derived from Meredith et al., 2022), with SSA influenced lakes having positive PC1 scores, which suggests higher concentrations of marine derived ions. The grouping of samples influenced by catchment processes and those influenced by rainfall is driven by PC2 with catchment influenced lakes having lower elevation and higher ion concentrations. SSA and rainfall influenced lakes cluster based on the year that they were sampled with greater ion concentrations in 2018.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Stable water isotopes</title>
      <p id="d2e2887"><inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M172" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> were measured in the 2022 samples and ranged from <inline-formula><mml:math id="M173" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>38.3 ‰ to <inline-formula><mml:math id="M174" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>9.2 ‰ and <inline-formula><mml:math id="M175" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>38.3 ‰ to <inline-formula><mml:math id="M176" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.67 ‰, respectively. Lake waters in 2018 and 2022 fell below the Global and Cape Grim (northwest Tasmania) Meteoric Water Lines (MWLs), suggesting slight isotopic enrichment in Macquarie Island's lakes (Fig. 6). In 2018, lake waters were significantly higher in <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> (mean <inline-formula><mml:math id="M178" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>24.8 ‰) and <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (mean <inline-formula><mml:math id="M180" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.83 ‰) compared to 2022 (mean <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M182" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M183" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>24.8 ‰ and <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M185" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M186" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.55 ‰).  Significant isotopic enrichment of <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M188" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M189" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M190" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.001) can be seen in the data at the beginning of the 2022 austral summer (E2–3; Fig. 6a). SSA influenced lakes tended to have higher isotopic values, while catchment influenced lakes had lower values (Fig. 6b), with a significant difference between all lake types detected (<inline-formula><mml:math id="M191" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M192" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.001). LK20 and LK21 from E2 were outliers, plotting above the MWLs with lower <inline-formula><mml:math id="M193" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values. Cl concentrations appeared to be related to <inline-formula><mml:math id="M194" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M195" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values (Fig. 6c), however the correlation between the parameters was low (<inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M197" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 0.24). This lack of relationship was consistent across lake types and sampling events.</p>

      <fig id="F6" specific-use="star"><label>Figure 6</label><caption><p id="d2e3154">Stable water isotope <inline-formula><mml:math id="M198" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M199" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> differences in Macquarie Island lake waters, shown across: <bold>(a)</bold> sampling events; <bold>(b)</bold> lake type; <bold>(c)</bold> <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M201" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> relationship shown with Cl concentration (<inline-formula><mml:math id="M202" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">L</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Solid black line shows Macquarie Island regression, blue dashed line is the Global Meteoric Water Line (GMWL: <inline-formula><mml:math id="M203" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M204" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:mn mathvariant="normal">8</mml:mn><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>), and black dashed line is the Cape Grim Local Meteoric Water Line (LMWL: <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M207" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mn mathvariant="normal">6.8</mml:mn><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">6.65</mml:mn></mml:mrow></mml:math></inline-formula>).</p></caption>
          <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Diatoms</title>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>Diatom communities</title>
      <p id="d2e3338">In total, 141 diatom taxa from 45 genera were identified in the 52 plateau and coastal lakes. 96 taxa (including 21 unknown species) from 30 genera remained in the dataset after taxa with <inline-formula><mml:math id="M209" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 1 % relative abundance were excluded. The most taxon-rich genera were <italic>Pinnularia</italic> (16 taxa), <italic>Psammothidium</italic> (12 taxa), and <italic>Planothidum</italic> (8 taxa). The most dominant taxa being both common, occurring in <inline-formula><mml:math id="M210" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 15 lakes, and abundant, occurring <inline-formula><mml:math id="M211" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 25 % relative abundance in at least one sample, were <italic>Aulacoseira principissa</italic> Van de Vijver, <italic>Psammothidium abundans</italic> (Manguin) Bukhtiyarova and Round, <italic>Psammothidium confusum</italic> var. <italic>atomoides</italic> (Manguin) van de Vijver, unknown species 111, <italic>Psammothidium confusum</italic> (Manguin) van de Vijver, <italic>Fragilaria capucina</italic> Desmazières, and <italic>Navicula bergstromiana</italic> Vyverman et al. Coastal and plateau lakes showed distinctly different assemblages, with coastal lakes exhibiting less diversity (mean number of species <inline-formula><mml:math id="M212" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 20) and dominated by taxa including <italic>F. capucina</italic>, unknown sp. 111, <italic>Planothidium quadripunctatum</italic> (D. R. Oppenheim) Sabbe, <italic>Planothidium delicatum</italic> (Kützing) Round and Bukhtiyarova, and <italic>Planothidium lanceolatum</italic> (Brébisson ex Kützing) Lange-Bertalot. Plateau lakes were more diverse (mean number of taxa <inline-formula><mml:math id="M213" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 40) and dominated by <italic>A. principissa</italic>, <italic>P. abundans</italic>, <italic>P. confusum</italic> var. <italic>atomoides</italic>, <italic>P. confusum</italic>, <italic>N. bergstromiana</italic>, <italic>Achnanthidium modestiformis</italic> (Lange-Bertalot) Van de Vijver, <italic>Cocconeis placentulata</italic> Ehrenberg, and unknown species 21. No taxa were found in all lakes, and none were uniquely restricted to either coastal or plateau lakes, although clear differences in species composition and relative abundance were observed. See Fig. 7 for microscopy photos of the most abundant taxa.</p>

      <fig id="F7" specific-use="star"><label>Figure 7</label><caption><p id="d2e3448">The most abundant diatom taxa from plateau and coastal lakes on Macquarie Island. <bold>(a)</bold> <italic>Aulacoseira principissa</italic>; <bold>(b)</bold> <italic>Psammothidium abundans</italic>; <bold>(c)</bold> <italic>Psammothidium confusum</italic>; <bold>(d, e)</bold> <italic>Cocconeis placentulata</italic>; <bold>(f)</bold> <italic>Navicula bergstromiana</italic>; <bold>(g)</bold> <italic>Fragilaria capucina</italic>; <bold>(h)</bold> Unknown species 21; <bold>(i)</bold> <italic>Psammothidium confusum</italic> var. <italic>atomoides</italic>; <bold>(j)</bold> <italic>Achnanthidium modestiformis</italic>; <bold>(k)</bold> Unknown species 111; <bold>(l)</bold> <italic>Planothidium delicatulum</italic>; <bold>(m)</bold> <italic>Planothidium lanceolatum</italic>.</p></caption>
            <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f07.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>Diatom-environment relationships</title>
      <p id="d2e3537">The full CCA model was significant (<inline-formula><mml:math id="M214" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M215" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.001), with environmental variables explaining 23.9 % (Table 2) of the total variance in diatom species composition (constrained inertia <inline-formula><mml:math id="M216" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.5). Together, the first two canonical axes explained 62.8 % of the total constrained variance (Table 2; Fig. 8). Forward selection with Bonferroni corrections, identified EC, pH (<inline-formula><mml:math id="M217" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M218" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.003), and temperature (<inline-formula><mml:math id="M219" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M220" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.015) as the most significant predictors of diatom community composition, collectively explaining 15.4 % of the total variance. This equates to 70 % of the total explained variance in the full model, capturing the major environmental gradients influencing species distribution with a more parsimonious model.</p>

<table-wrap id="T2" specific-use="star"><label>Table 2</label><caption><p id="d2e3593">Full CCA model results.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Axis</oasis:entry>
         <oasis:entry colname="col2">Eigenvalue</oasis:entry>
         <oasis:entry colname="col3">Proportion of variance</oasis:entry>
         <oasis:entry colname="col4">Cumulative</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">explained (%)</oasis:entry>
         <oasis:entry colname="col4">proportion (%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">CCA1</oasis:entry>
         <oasis:entry colname="col2">0.77</oasis:entry>
         <oasis:entry colname="col3">51.07</oasis:entry>
         <oasis:entry colname="col4">51.07</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CCA2</oasis:entry>
         <oasis:entry colname="col2">0.38</oasis:entry>
         <oasis:entry colname="col3">25.14</oasis:entry>
         <oasis:entry colname="col4">76.21</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CCA3</oasis:entry>
         <oasis:entry colname="col2">0.22</oasis:entry>
         <oasis:entry colname="col3">14.55</oasis:entry>
         <oasis:entry colname="col4">90.76</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">CCA4</oasis:entry>
         <oasis:entry colname="col2">0.14</oasis:entry>
         <oasis:entry colname="col3">9.24</oasis:entry>
         <oasis:entry colname="col4">100.00</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Constrained inertia</oasis:entry>
         <oasis:entry colname="col2">1.5</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Constrained proportion (%)</oasis:entry>
         <oasis:entry colname="col2">23.9</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <fig id="F8" specific-use="star"><label>Figure 8</label><caption><p id="d2e3733">Full CCA ordination biplot of diatom species and environmental data, numbers indicate sites, and red symbols indicate diatom species. Si <inline-formula><mml:math id="M221" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> silicate, P <inline-formula><mml:math id="M222" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> phosphate, N <inline-formula><mml:math id="M223" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> total oxidised nitrogen, and conduct <inline-formula><mml:math id="M224" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> electrical conductivity (EC).</p></caption>
            <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f08.png"/>

          </fig>

<table-wrap id="T3" specific-use="star"><label>Table 3</label><caption><p id="d2e3774">Individual CCA results, independent CCAs run for each variable. (<sup>∗</sup> <inline-formula><mml:math id="M226" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> significant <inline-formula><mml:math id="M227" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> value <inline-formula><mml:math id="M228" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.05).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Variable</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">Constrained</oasis:entry>
         <oasis:entry colname="col4">Variance</oasis:entry>
         <oasis:entry colname="col5">Proportion of full</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M230" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>-value</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">sum</oasis:entry>
         <oasis:entry colname="col4">explained (%)</oasis:entry>
         <oasis:entry colname="col5">model explained (%)</oasis:entry>
         <oasis:entry colname="col6"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Electrical conductivity</oasis:entry>
         <oasis:entry colname="col2">1.31</oasis:entry>
         <oasis:entry colname="col3">0.64</oasis:entry>
         <oasis:entry colname="col4">10.62</oasis:entry>
         <oasis:entry colname="col5">42.28</oasis:entry>
         <oasis:entry colname="col6">0.001<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Phosphate</oasis:entry>
         <oasis:entry colname="col2">0.73</oasis:entry>
         <oasis:entry colname="col3">0.40</oasis:entry>
         <oasis:entry colname="col4">6.59</oasis:entry>
         <oasis:entry colname="col5">26.23</oasis:entry>
         <oasis:entry colname="col6">0.001<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total oxidised nitrogen</oasis:entry>
         <oasis:entry colname="col2">0.68</oasis:entry>
         <oasis:entry colname="col3">0.35</oasis:entry>
         <oasis:entry colname="col4">5.78</oasis:entry>
         <oasis:entry colname="col5">22.99</oasis:entry>
         <oasis:entry colname="col6">0.001<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">pH</oasis:entry>
         <oasis:entry colname="col2">0.39</oasis:entry>
         <oasis:entry colname="col3">0.33</oasis:entry>
         <oasis:entry colname="col4">5.43</oasis:entry>
         <oasis:entry colname="col5">21.63</oasis:entry>
         <oasis:entry colname="col6">0.001<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Silicate</oasis:entry>
         <oasis:entry colname="col2">0.26</oasis:entry>
         <oasis:entry colname="col3">0.19</oasis:entry>
         <oasis:entry colname="col4">3.14</oasis:entry>
         <oasis:entry colname="col5">12.48</oasis:entry>
         <oasis:entry colname="col6">0.034<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Temperature</oasis:entry>
         <oasis:entry colname="col2">0.22</oasis:entry>
         <oasis:entry colname="col3">0.14</oasis:entry>
         <oasis:entry colname="col4">2.27</oasis:entry>
         <oasis:entry colname="col5">9.03</oasis:entry>
         <oasis:entry colname="col6">0.382</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Dissolved oxygen</oasis:entry>
         <oasis:entry colname="col2">0.12</oasis:entry>
         <oasis:entry colname="col3">0.12</oasis:entry>
         <oasis:entry colname="col4">1.97</oasis:entry>
         <oasis:entry colname="col5">7.85</oasis:entry>
         <oasis:entry colname="col6">0.586</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e4089">Individual CCAs were performed to assess the total explanatory power of each variable. EC and pH were shown to be the strongest, individually explaining 10.62 % and 5.43 % of the total variation, respectively. This corresponds to 44.4 % and 22.7 % of the total variance in the full CCA model. Additionally, EC was the only variable with a high <inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> ratio (<inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M238" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.31; Table 3), suggesting it is the only variable with enough explanatory power for inference modelling.</p>

<table-wrap id="T4" specific-use="star"><label>Table 4</label><caption><p id="d2e4136">Partial CCA results, where each variable was tested with the covariation of other variables controlled (<sup>∗</sup> <inline-formula><mml:math id="M240" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> significant <inline-formula><mml:math id="M241" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> value <inline-formula><mml:math id="M242" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.05).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Variable</oasis:entry>
         <oasis:entry colname="col2">Variance</oasis:entry>
         <oasis:entry colname="col3">Proportion of full</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M243" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>-value</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">explained (%)</oasis:entry>
         <oasis:entry colname="col3">model explained (%)</oasis:entry>
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">pH</oasis:entry>
         <oasis:entry colname="col2">5.97</oasis:entry>
         <oasis:entry colname="col3">18.92</oasis:entry>
         <oasis:entry colname="col4">0.001<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Electrical conductivity</oasis:entry>
         <oasis:entry colname="col2">5.58</oasis:entry>
         <oasis:entry colname="col3">17.62</oasis:entry>
         <oasis:entry colname="col4">0.001<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Silicate</oasis:entry>
         <oasis:entry colname="col2">3.87</oasis:entry>
         <oasis:entry colname="col3">11.99</oasis:entry>
         <oasis:entry colname="col4">0.008<sup>∗</sup></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Temperature</oasis:entry>
         <oasis:entry colname="col2">2.81</oasis:entry>
         <oasis:entry colname="col3">8.61</oasis:entry>
         <oasis:entry colname="col4">0.151</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total oxidised nitrogen</oasis:entry>
         <oasis:entry colname="col2">2.06</oasis:entry>
         <oasis:entry colname="col3">6.28</oasis:entry>
         <oasis:entry colname="col4">0.651</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Phosphate</oasis:entry>
         <oasis:entry colname="col2">1.71</oasis:entry>
         <oasis:entry colname="col3">5.20</oasis:entry>
         <oasis:entry colname="col4">0.774</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Dissolved oxygen</oasis:entry>
         <oasis:entry colname="col2">1.34</oasis:entry>
         <oasis:entry colname="col3">4.06</oasis:entry>
         <oasis:entry colname="col4">0.991</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e4353">Partial CCAs were performed with each environmental variable tested separately while controlling for covariation with all other variables, to quantify unique and shared variance contributions. EC, pH, and Si were the only variables to have significant unique contributions (<inline-formula><mml:math id="M247" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M248" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 0.01; Table 4). The shared and unique variance of each environmental variable is shown in Fig. 9. EC explained the largest proportion of total constrained variation (46 %) in diatom community composition, with a large shared component (18 % unique, 28 % shared), suggesting it acts along a major environmental gradient shared with TON and <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> (Fig. 8). Despite this, it performed well in all other CCAs and its unique contribution remained high, indicating it is an important independent driver of diatom structure across Macquarie Island lakes. Furthermore, low VIFs among all environmental variables (VIFs <inline-formula><mml:math id="M250" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 3) indicated that multicollinearity was low. EC (VIF <inline-formula><mml:math id="M251" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2.6) showed a low correlation with other variables (<inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M253" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 0.47), suggesting it represents a largely independent gradient in the dataset. In contrast, pH had similar unique variance (18.4 %) and lower shared variance (2.4 %), implying a more independent ecological influence.</p>

      <fig id="F9"><label>Figure 9</label><caption><p id="d2e4421">Variance partitioning showing unique and shared proportions of variance explained by each environmental variable.</p></caption>
            <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f09.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS3.SSS3">
  <label>3.3.3</label><title>Species optima and tolerances</title>
      <p id="d2e4438">Species optima across major environmental gradients EC and pH were determined with WA. <italic>F. capucina</italic>, <italic>P. lanceolatum</italic>, and <italic>P. delicatulum</italic> were found across the EC range with broad tolerances, however each species showed different optima (Fig. 10). The apparent bimodal distribution of <italic>F. capucina</italic> likely reflects ecological plasticity across differing hydrochemical conditions and/or potential taxonomic aggregation within this morphotype. Exploration of a GAM-based response curve (Fig. S2 in the Supplement) indicates <italic>F. capucina</italic> has a weak non-linear relationship with EC, suggesting a broad and flexible ecological response rather than a strongly defined unimodal optimum. Unknown sp. 111 was found to tolerate high EC, while most other dominant species, including <italic>A. principissa</italic>, <italic>C. placentulata</italic>, <italic>N. bergstromiana</italic> and dominant <italic>Psammothidium</italic> species show tolerance and optima for low EC.</p>

      <fig id="F10" specific-use="star"><label>Figure 10</label><caption><p id="d2e4471">Weighted averaging (WA) optima (solid red line) and tolerance ranges (dashed red lines) for dominant diatom species across the electrical conductivity gradient in Macquarie Island lakes. Observed relative abundances (%) are plotted against log-transformed electrical conductivity, with fitted loess curves illustrating species response shapes along the conductivity gradient (126–1482 <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Roman numerals indicate Gaussian response curve type.</p></caption>
            <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f10.png"/>

          </fig>

      <fig id="F11" specific-use="star"><label>Figure 11</label><caption><p id="d2e4501">Weighted averaging (WA) optima (solid red line) and tolerance ranges (dashed red lines) for dominant diatom species across the pH gradient in Macquarie Island lakes. Observed relative abundances (%) are plotted against pH, with fitted loess curves illustrating species response shapes along the pH gradient (5.50–9.14 <inline-formula><mml:math id="M255" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">°</mml:mi><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>).</p></caption>
            <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f11.png"/>

          </fig>

      <p id="d2e4521">Dominant diatom species occurred across the pH gradient, with species optima ranging from moderately acidic to neutral (Fig. 11). Most dominant species had optima for moderate acidity, with <italic>Psammothidium</italic> species, <italic>A. principissa</italic>, and <italic>N. bergstormiana</italic> showing narrow pH tolerances. <italic>C. placentulata</italic> and <italic>F. capucina</italic> showed broader tolerances and unknown sp. 111 was the only dominant species with a near neutral optima.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS4">
  <label>3.3.4</label><title>Diatom transfer functions</title>
      <p id="d2e4547">Ordination analyses showed that EC and pH explained significant and independent proportions of variance in diatom composition. While temperature also showed significant but lesser contributions, it was not considered for transfer function development as diatom-based temperature reconstructions as species responses to temperature can be indirect and influenced by multiple co-varying environmental gradients, limiting the reliability of temperature inference (e.g. Juggins, 2013). While Si was shown to independently contribute to diatom variance, reduced CCA modelling with forward selection did not indicate it to be a major environmental gradient. Transfer functions were therefore only developed for EC and pH. Transfer function results for the best performing WA, WAPLS, or ML model for EC and pH are described in Table 5.</p>

<table-wrap id="T5" specific-use="star"><label>Table 5</label><caption><p id="d2e4553">Best performing WA, WAPLS or ML model results for electrical conductivity and pH.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Variable</oasis:entry>
         <oasis:entry colname="col2">Model</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">RMSE</oasis:entry>
         <oasis:entry colname="col6">RMSEP</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Electrical conductivity</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.83</oasis:entry>
         <oasis:entry colname="col4">0.74</oasis:entry>
         <oasis:entry colname="col5">0.31</oasis:entry>
         <oasis:entry colname="col6">0.39</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">ML</oasis:entry>
         <oasis:entry colname="col3">0.91</oasis:entry>
         <oasis:entry colname="col4">0.80</oasis:entry>
         <oasis:entry colname="col5">0.22</oasis:entry>
         <oasis:entry colname="col6">0.40</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">pH</oasis:entry>
         <oasis:entry colname="col2">WAPLS-2</oasis:entry>
         <oasis:entry colname="col3">0.72</oasis:entry>
         <oasis:entry colname="col4">0.26</oasis:entry>
         <oasis:entry colname="col5">0.33</oasis:entry>
         <oasis:entry colname="col6">0.60</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e4696">For EC, <inline-formula><mml:math id="M259" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and WAPLS-1 produced near identical results. <inline-formula><mml:math id="M260" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was favoured as the simpler model (<inline-formula><mml:math id="M261" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M263" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.83, <inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M265" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.74, RMSE <inline-formula><mml:math id="M266" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.31, RMSEP <inline-formula><mml:math id="M267" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.39). Although WAPLS-2 to -5 increased <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and reduced RMSE, each successive component progressively increased RMSEP by 13 %–16 %, thereby reducing performance. Given the unimodal gradient structure of the dataset, ML modelling was also assessed for EC. ML showed slightly stronger predictive performance to <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, with higher <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> and comparable RMSEP (ML, <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M272" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.91<inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mo>,</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M274" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.80, RMSE <inline-formula><mml:math id="M275" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.23, RMSEP <inline-formula><mml:math id="M276" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.40).</p>

      <fig id="F12" specific-use="star"><label>Figure 12</label><caption><p id="d2e4879">Comparison of observed environmental measurements with values predicted by diatom-based transfer functions: <bold>(a)</bold> pH estimated using WAPLS-2; <bold>(b)</bold> conductivity estimated using WA with inverse deshrinking (<inline-formula><mml:math id="M277" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>); and <bold>(c)</bold> conductivity estimated using the maximum likelihood (ML) method. Black lines show the <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> line.</p></caption>
            <graphic xlink:href="https://bg.copernicus.org/articles/23/3807/2026/bg-23-3807-2026-f12.png"/>

          </fig>

      <p id="d2e4920">Comparison of observed and predicted value scatter plots indicated that ML achieved a tighter fit, with <inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> showing increased predictive error at higher EC ranges (Fig. 12). However, further inspection indicated that only <inline-formula><mml:math id="M280" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 % of taxa displayed Gaussian (Types IV–V) response curves indicating ML may not be the most appropriate approach (Fig. 10 and see Table S5  for full Gaussian response curve results). However, overfitting from ML is not likely as RMSEP did not increase. Overall, both models show cross-validated performance and are considered robust.</p>
      <p id="d2e4941">pH had poor performance across all WA and WAPLS models with high RMSEP (<inline-formula><mml:math id="M281" display="inline"><mml:mo lspace="0mm">≥</mml:mo></mml:math></inline-formula> 0.6) and low <inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M283" display="inline"><mml:mo lspace="0mm">≤</mml:mo></mml:math></inline-formula> 0.26). WAPLS-2 was found to be the strongest model (WAPL-2, <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M285" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.72, <inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M287" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.26, RMSE <inline-formula><mml:math id="M288" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.33, RMSEP <inline-formula><mml:math id="M289" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.60). ML modelling showed poor performance for pH with high RMSEP <inline-formula><mml:math id="M290" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.93.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Discussion</title>
</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>Annual and seasonal lake water hydrogeochemical variation</title>
      <p id="d2e5049">The seasonal hydrochemistry dataset presented in this study support the 2018 baseline assessment (Meredith et al., 2022) that lake water chemistry is controlled by SSAs, terrestrial catchment processes, elevation and rainfall dilution. The seasonal water chemistry data, which is presented for the first time in this study, shows that there is no significant variation in major ions across the 2022–2023 austral summer. Comparison of 2018 and 2022 data shows that significant variation (<inline-formula><mml:math id="M291" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M292" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.005), in some major ions is evident, with higher concentrations in 2018 of Br and Cl, <inline-formula><mml:math id="M293" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and Mg associated with SSAs. Although not statistically significant (<inline-formula><mml:math id="M294" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M295" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.005), other sea-spray derived ion mean values (Na, Ca, K) were higher in 2018 (Fig. 3; Table S4). However, not all ions increased in concentration, and terrestrially derived ions such as Fe, F, Si, and Al were lower in 2018, suggesting that lakes in 2022 had stronger SSA influence.</p>
      <p id="d2e5091">Despite these changes, PCA of the 2018 and 2022 lake water chemistry datasets (Fig. 5) show that lakes typically cluster by the lake types identified in Meredith et al. (2022) (i.e., as SSA, catchment and rainfall influenced). This indicates that the major hydrogeochemical processes influencing Macquarie Island lakes are consistent between years, with no major environmental shifts occurring in weathering and erosion of the island's geology, suggesting these processes are stable on an annual time scale. Identifying hydrogeochemical stability is important for identifying lake sites suitable for diatom–conductivity inference models. It also strengthens palaeoclimate interpretations by suggesting that local lake dynamics are relatively constant, supporting the hypothesis that in sea-spray dominated lakes, proxies primarily record externally forced changes driven by the SHW rather than internal hydrological or geochemical dynamics (Saunders et al., 2018; Perren et al., 2020). This further emphasises that water chemistry characteristics are critical to consider in site-selection to develop reliable SHW reconstructions on Macquarie Island.</p>
</sec>
<sec id="Ch1.S3.SS6">
  <label>3.6</label><title>Evaporation</title>
      <p id="d2e5102">Interpreting environmental proxies as direct indicators of climate variability can be challenging, as multiple processes may produce similar signals (Molén, 2024). When using diatom–conductivity models to infer past SHW variability, it is essential to consider how near surface evaporation has the potential to concentrate ions in surface waters and mimic the effects of other processes such as increasing lake water salinity from SSA deposition due to stronger winds. Although this study and previous studies (Evans, 1970; Buckney and Tyler, 1974; Meredith et al., 2022) have demonstrated that SHW-driven SSA inputs are a dominant control on lake water chemistry on Macquarie Island, the role of evaporation in amplifying these signals remains unclear.</p>
      <p id="d2e5105">To explore this, we analysed <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values from 2018 and across the 2022–2023 Austral summer. Isotopic enrichment is evident across the 2022–2023 season (Fig. 6a), indicating a strengthening evaporative signal through summer. Lake stable water isotopes sampled in 2018 were significantly more enriched than the 2022 mean, as expected given that the 2018 samples were collected in late summer, when evaporative effects are strongest and cumulative due to warmer temperatures throughout summer. This is supported by lake water temperatures being significantly lower in early summer (E2) compared to late summer (E3 and E4; Table 1). Given Macquarie Island's persistently high cloud cover, humidity, and low sunshine hours (BOM, 2025), solar evaporation is likely limited and confined to the summer season. Evaporation can produce heavy-isotope enrichment and the residual lake water becomes progressively enriched in heaver isotopes (<inline-formula><mml:math id="M298" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>), moving away from the Global MWL (Gat, 1996). Comparisons between E1 (2018) and E4 (2022), which were sampled at the same time of the year in January–February provide a valuable comparison of potential interannual variability in lake water chemistry and processes (Fig. 3, Table S4). These two sampling events show near identical mean isotopic composition (<inline-formula><mml:math id="M300" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M301" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.01; <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M303" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M304" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.7 ‰ and <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M306" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M307" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.8 ‰ in 2022, and <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M309" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M310" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.1 ‰ and <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M312" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M313" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.8 ‰ in 2018), suggesting broadly stable summer evaporative conditions between years. Furthermore, SSA influenced lakes on the plateau are in proximity to the west coast and have the greatest exposure to the SHW (Fig. 2b). These lakes have significantly higher isotopic enrichment (Fig. 5b), providing further evidence that wind is likely the primary driver of evaporation in plateau lake waters across Macquarie Island, particularly in lakes located on the west coast, which may be most suitable for reconstructions of SHW dynamics (Saunders et al., 2018). As both wind-enhanced evaporation and wind-driven SSA transport and deposition contributes to the concentration of SSA ions in these lakes, both ion deposition and concentration reflect a SHW signal.</p>
      <p id="d2e5285"><inline-formula><mml:math id="M314" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Cl</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is a robust tracer of hydrogeochemical processes and, together with <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> values, can be used to better understand evaporation (Kirchner et al., 2010). While the isotopic enrichment observed generally indicates an evaporative signal, the absence of a correlation between <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Cl</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M318" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M319" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. 6c) suggests that isotopes are capturing short-term (summer) evaporation rather than sustained evaporative concentration sufficient to increase <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Cl</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> concentration in the lake waters like those in environments driven primarily by solar evaporation (Meredith et al., 2009). On Macquarie Island, wind-driven SSA deposition and rainfall dilution therefore likely remain the primary drivers of <inline-formula><mml:math id="M321" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">Cl</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> variability. Consequently, EC in lake waters of Macquarie Island remains a robust proxy for interpreting variations in SHW strength.</p>
</sec>
<sec id="Ch1.S3.SS7">
  <label>3.7</label><title>Diatom communities</title>
      <p id="d2e5392">Diatom analysis showed that typical sub-Antarctic genera (Van de Vijver, 2019; Goeyers et al., 2022), including <italic>Psammothidum</italic>, <italic>Planothidium</italic>, and <italic>Fragilaria</italic>, dominated lake diatom communities on Macquarie Island. Across 52 lakes, 141 taxa were identified, indicating intermediate species diversity relative to previous studies on the island which reported 102 (McBride, 2009) and 208 (Saunders et al., 2009) species. Consistent with these earlier studies we have demonstrated that diatoms on Macquarie Island exhibit clear and distinct ecological preferences. Combined with the pronounced environmental gradients among lakes, these species-environment relationships provide a strong basis for using diatoms as indicators of limnological conditions and environmental change.</p>
      <p id="d2e5404"><italic>Psammothidium</italic> species are characteristic of low EC sites (Van de Vijer et al., 2002), and while abundance and dominance of key <italic>Psammothidium</italic> species showed variation along the lower end of the EC gradient (Fig. 10), they dominated low EC sites. <italic>N. bergstromiana</italic> is considered endemic to Macquarie Island and was commonly found with dominant <italic>Psammothidium</italic> species at low EC sites, typically occurring where EC was <inline-formula><mml:math id="M322" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 200 <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, consistent with what has previously been reported (Sabbe et al., 2019). <italic>A. principissa</italic>, previously identified as <italic>Aulacoseria distans</italic> (Ehrenberg) Simonsen on Macquarie Island (McBride, 2009; Saunders et al., 2009), was also common at low EC (Fig. 10). This taxa is commonly found on sub-Antarctic Islands and is suggested to prefer very low conductance values <inline-formula><mml:math id="M324" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 80 <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Van de Vijver, 2012), while EC was not observed <inline-formula><mml:math id="M326" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 160 <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">S</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in this dataset, <italic>A. principissa</italic> may be an indicator of very low EC conditions.</p>
      <p id="d2e5507"><italic>P. lanceolatum</italic> was a dominant high EC, high nutrient taxa. While it has been found to dominate flora elsewhere, this contrasts previous studies where it has been reported to be characteristic of oligotrophic conditions (Van de Vijer et al., 2002). <italic>F. capucina</italic>, <italic>P. delicatulum</italic>, and unknown sp. 111 were more commonly dominant at high EC. <italic>F. capucina</italic> was found across the EC gradient displaying a bimodal distribution (Fig. 10), consistent with its cosmopolitan and ecologically tolerant nature (Van de Vijer et al., 2002).</p>
</sec>
<sec id="Ch1.S3.SS8">
  <label>3.8</label><title>Developing transfer functions</title>
      <p id="d2e5529">A key aim of this study was to update and improve existing quantitative diatom models for Macquarie Island. While the dominant taxa identified here are consistent with those reported by Saunders et al. (2009), the strength of some diatom–environment relationships differ. EC and pH remain strong explanatory variables for diatom variation, whereas <inline-formula><mml:math id="M328" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> and Si showed limited influence in the present study (Tables 3 and 4). This reduced explanatory power likely reflects the low nutrient variability across plateau lakes, where concentrations were generally below detection limits.</p>
      <p id="d2e5548">Sub-Antarctic lakes are characteristically oligotrophic; high nutrient levels do occur, but they are associated with peatlands or animal colonies, as is the case with coastal lakes on Macquarie Island (Selkirk et al., 1990). Saunders et al. (2009) recorded greater nutrient variability across plateau sites at the lower end of the EC gradient, attributed to enhanced organic inputs during periods of high ecological disturbance from invasive rabbits. These differences suggest that the dataset in the present study represents post-eradication limnological conditions that are more reflective of pre-invasion or near-natural states, providing an updated basis for developing robust diatom–environment models that are less influenced by disturbance. The use of field parameters collected across multiple sampling events increases confidence that the developed models reflect representative environmental conditions (Goldenberg Vilar et al., 2018; Kennedy and Buckley, 2021). Such repeated-sampling approaches are rarely achieved in diatom transfer function development, particularly in remote regions such as the sub-Antarctic.</p>
      <p id="d2e5551">Widespread recovery of vegetation communities provides evidence for catchment scale ecosystem recovery across the island (Springer, 2018; Fitzgerald et al., 2021). While quantitative runoff or nutrient time series are not available to directly extend this to limnological conditions, we are able to provide site-specific evidence from one sedimentary diatom record. At Emerald Lake (LK6), downcore diatom assemblages show a clear ecological shift coincident with the introduction of rabbits (1878 CE) and their establishment on Macquarie Island, with <italic>F. capucina</italic> and <italic>P. abundans</italic> dominating downcore intervals (Saunders et al., 2013). In contrast, diatom assemblages in recent (2022) surface sediments from this site exhibit higher diversity (48 species) and greater similarity in assemblage composition to pre-rabbit sediment intervals rather than assemblages from previously collected 2006 surface sediments (15 species), which were dominated by <italic>F. capucina</italic> (48 % relative abundance). Notably, <italic>F. capucina</italic> was absent from the 2022 surface sample. Together, these lines of evidence suggest that the modern calibration dataset is less influenced by organic inputs and erosion associated with the rabbit invasion period. Accordingly, we interpret the 2022 dataset as representing post-eradication recovery conditions that are moving toward, but do not necessarily fully reflect, pre-disturbance baseline states. However, further studies are needed to assess how widespread this is across the island.</p>
      <p id="d2e5566">EC was shown to be the major independent driver of diatom assemblages, with strong performance in all CCA models, individually accounting for almost 50 % of the variance in the full CCA model and strong explanatory power as indicted by <inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Table 3). Although EC reflects a high proportion of shared variance (Fig. 9), this is consistent with its role as an integrative measure of ionic strength and catchment inputs. The shared component primarily reflects its covariation with major ions and nutrient variables (TON and <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>), which are typically correlated with EC in these systems. Despite this overlap, EC retained a strong and highly significant independent effect (<inline-formula><mml:math id="M331" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M332" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.001), confirming its dominant ecological influence on diatom distributions.</p>
      <p id="d2e5618">While <inline-formula><mml:math id="M333" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, TON, and Si each explained significant but moderate portions of individual variance (Table 3), they were no longer significant once covariation was controlled for (Table 4), meaning their explanatory power is mostly shared variance with other environmental gradients, primarily EC and each other, with negligible unique variance. This interpretation is supported by simple linear correlations between EC and nutrient variables in coastal lakes, which show weak or absent relationships (Fig. S3). These results indicate that although nutrients and EC co-occur in coastal systems, nutrient variability is not strongly or systematically coupled to EC. Together with the VIFs (<inline-formula><mml:math id="M334" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 3), variance partitioning and partial CCA results (Table 4), this supports the interpretation that the weak unique nutrient signal reflects an ecological reality in which EC exerts a first-order control on diatom assemblages, rather than a statistical artefact of collinearity. Similarly, while pH explained a major and independent gradient in diatom variation within plateau lakes (Fig. 8), it did not capture assemblage changes across high-EC, high-nutrient sites. This was indicated by individual CCA results, which were less than half of the variance explained by EC (Table 3). This, paired with the widespread oligotrophic nature of plateau lakes on Macquarie Island lends strength to the independent explanatory power of EC across the whole dataset.</p>
      <p id="d2e5644">Furthermore, pH showed poor predictive performance as a transfer function, with the lowest <inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M336" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.26, and high RMSEP <inline-formula><mml:math id="M337" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.6 from the WAPLS-2 model (Table 5). While this is surprising due to the strong pH gradient across plateau sites, most diatoms were found across the pH gradient (Fig. 11) with some species showing broad tolerance and pH ranges. EC had the strongest performance with the WA and ML models producing the highest <inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> (0.74 and 0.80, respectively) and comparable RMSEP. <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">WA</mml:mi><mml:mi mathvariant="normal">INV</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and WAPLS-1 showed identical performance, with no benefit from additional WAPLS components, which progressively increased predictive error and decreased <inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>, suggesting overfitting. WA was therefore chosen over WAPLS as the simpler model.</p>
      <p id="d2e5712">The WA EC transfer function performed better than the previously published Macquarie Island diatom-conductivity transfer function (Saunders et al., 2009), with higher <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>. However, some caution is warranted when predicting across the upper EC range, where greater predictive error is evident (Fig. 12). This can be attributed to lower species turnover, higher variability in <inline-formula><mml:math id="M342" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">PO</mml:mi><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>, TON, and Si, and fewer sites at the upper end of the nutrient and EC gradients. Further refinement of the EC transfer functions could be achieved with more evenly distributed sampling across the environmental gradient. The ML model, with higher <inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mtext>boot</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>, appears more capable of addressing these issues and maintains more consistent predictive power across the EC range. This is likely due to its explicit curve-fitting approach. By estimating individual species optima and tolerances, ML can better represent asymmetric or skewed response curves (Birks, 2012). The ML transfer function is therefore considered to be the preferred model, although both WA and ML are robust based on comparable RMSEP.</p>
</sec>
<sec id="Ch1.S3.SS9">
  <label>3.9</label><title>Future applications for reconstructing past climate changes</title>
      <p id="d2e5765">The conceptual link between large-scale wind regimes and long-term limnological and ecological responses in Southern Hemisphere lake systems is well established in previous studies (e.g., Saunders et al., 2009, 2015, 2018; Perren et al., 2020, 2025; Van Nieuwenhuyze, 2020; Humphries et al., 2021; Meredith et al., 2022). The data presented here builds on this existing framework and demonstrates that incorporating diatom data with seasonal and multi-year hydrogeochemical data provides a unique opportunity to comprehensively understand diatom-environment responses. By quantifying temporal variability in hydrogeochemical processes, including the role of evaporation, this study strengthens confidence that EC reflects SHW-driven sea-spray inputs rather than local lake hydrogeochemical processes. This hydrological context is critical for interpreting diatom–environment relationships and ensuring the reliability of EC as a proxy for past SHW behaviour, providing a strong foundation for future palaeoclimate reconstructions. The resulting diatom–conductivity model provides a robust and ecologically grounded framework for reconstructing long-term SHW variability on Macquarie Island and establishes an important benchmark for sub-Antarctic palaeoclimate comparisons across the region. This model will be applied in future studies to reconstruct past variability in the SHW and associated hydroclimatic changes on Macquarie Island. Any future time-series monitoring of lake EC paired with local wind speed records would further allow direct assessment of the relationship between wind speed and lake salinity, including the rate of hydrogeochemical response and any wind speed thresholds required to drive measurable change.</p>
      <p id="d2e5768">By capturing post-eradication and near-natural ecological conditions, the EC model developed in this study offers an improved foundation for assessing long-term wind-driven variability, as it reduces ecological noise associated with past disturbance. When applied in parallel with other proxies, such as isotopic or geochemical indicators, these reconstructions will contribute to a more comprehensive understanding of past SHW dynamics and their role in modulating Southern Hemisphere mid-high latitude climate, thereby providing context for understanding future changes.</p>
      <p id="d2e5771">Furthermore, a multiproxy approach will be valuable for independently reconstructing key climatic drivers, including precipitation, temperature, and atmospheric circulation, thereby improving interpretations of past SHW variability and helping to assess how hydroclimatic processes may modify EC signals (e.g., through dilution and enrichment). On Macquarie Island, geochemical indicators of sea-spray and dust inputs (e.g., S, Br, Ti) can help distinguish marine aerosol delivery from catchment-derived material, while glycerol dialkyl glycerol tetraethers (GDGT)-biomarker reconstructions can provide an independent constraint on temperature variability. Both approaches are currently being undertaken on Macquarie Island lake sediment cores by our research group. Mercury (Hg) concentrations and isotopes offer an independent proxies for atmospheric transport and Hg deposition linked to large-scale circulation, precipitation, and the influence of seabirds, all particularly well suited to the remote setting of Macquarie Island (Schneider et al., 2022; Guédron et al., 2018), which is also the focus of ongoing work (e.g. Schneider et al., 2024; Li et al., 2026). Although isotope (<inline-formula><mml:math id="M344" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M345" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) palaeo-records are not currently available for Macquarie Island, they represent an important avenue for future research to constrain precipitation–evaporation balance. Together, these complementary proxies provide a framework to separate the relative influence of atmospheric circulation, hydroclimate, and temperature on lake systems, providing more comprehensive palaeoclimate records and interpretations.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusion</title>
      <p id="d2e5809">This study aimed to update and re-evaluate the reliability of diatom–conductivity models as a proxy for reconstructing SHW variability on Macquarie Island by analysing diatom–environment relationships in the context of seasonal and multi-year water chemistry and isotopic analyses. Our results demonstrate that although lake hydrogeochemical processes vary locally, they remain stable seasonally and between years. Lakes near the west coast and on the western edge consistently reflect strong SSA influence, and while short-term evaporative enrichment occurs during summer, it does not obscure the dominant signal of SHW-driven SSA inputs. Accordingly, EC reliably reflects SSA deposition rather than internal lake hydrogeochemical processes, providing a firm mechanistic basis for the use of EC as an indicator of SSA deposition in palaeoclimate studies on Macquarie Island.</p>
      <p id="d2e5812">Diatom–environment relationships were found to be strong and ecologically coherent, supporting the development of a robust diatom–conductivity transfer function. Importantly, this study highlights the need for careful site selection, with lakes that demonstrate stable hydrogeochemical behaviour, clear SSA influence, and limited local disturbance providing the most reliable archives for reconstructing past SHW variability. The resulting EC transfer function offers a reliable tool for reconstructing long-term SHW dynamics, supported by well-characterised modern hydrological controls. Together, these findings establish Macquarie Island as a well-constrained system for SHW reconstructions and provide a strong foundation for future palaeoclimate work across the sub-Antarctic region.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d2e5820">The raw data supporting the conclusions of this work is available on request. The Diatom Catalogue and Species List can be accessed from DOI <ext-link xlink:href="https://doi.org/10.5281/zenodo.18041221" ext-link-type="DOI">10.5281/zenodo.18041221</ext-link> (Selfe, 2025).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d2e5826">The supplement related to this article is available online at <inline-supplementary-material xlink:href="https://doi.org/10.5194/bg-23-3807-2026-supplement" xlink:title="pdf">https://doi.org/10.5194/bg-23-3807-2026-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d2e5836">Caitlin Selfe: Conceptualization; Data curation; Formal analysis; Investigation; Methodology; Validation; Visualization; Writing – original draft; Writing – review and editing. Karina Meredith: Supervision; Research design; Resources; Writing – review and editing. Liza McDonough: Resources; Writing – review and editing. Justine Shaw: Supervision; Writing – review and editing. Stephen Roberts: Supervision; Writing – review and editing. Krystyna Saunders: Conceptualisation; Supervision; Resources; Funding acquisition; Writing – review and editing.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d2e5842">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d2e5848">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. The authors bear the ultimate responsibility for providing appropriate place names. Views expressed in the text are those of the authors and do not necessarily reflect the views of the publisher.</p>
  </notes><ack><title>Acknowledgements</title><p id="d2e5854">Caitlin A. Selfe was supported by an AINSE Ltd. Residential Student Scholarship and acknowledges help undertaking fieldwork from Maggie Smith, Sam Beale, Jez Bird, and Adam Darragh. We thank the Tasmanian Parks and Wildlife Service and Australian Antarctic Division (AAS 4628) for field support and access to Macquarie Island. We also thank ANSTO laboratories for sample analysis, particularly Chris Vardanega and Henri Wong. This work contributes to delivering the Australian Antarctic Science Decadal Strategy, in particular the Climate System and Change key priority.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d2e5859">This work was supported by ARC SRIEAS Grant SR200100005 Securing Antarctica's Environmental Future.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d2e5865">This paper was edited by Cindy De Jonge and reviewed by Lixiong Xiang and Anson Mackay.</p>
  </notes><ref-list>
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