<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "https://jats.nlm.nih.gov/nlm-dtd/publishing/3.0/journalpublishing3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
<front>
<journal-meta>
<journal-id journal-id-type="publisher">BG</journal-id>
<journal-title-group>
<journal-title>Biogeosciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">BG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Biogeosciences</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1726-4189</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/bg-5-1573-2008</article-id>
<title-group>
<article-title>Seasonal to hour variation scales in abundance and production of total and particle-attached bacteria in the open NW Mediterranean Sea (0–1000 m)</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mével</surname>
<given-names>G.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Vernet</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Goutx</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Ghiglione</surname>
<given-names>J. F.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>CNRS, UMR 7144, Equipe de Chimie Marine, Station Biologique de Roscoff, 29682 Roscoff, France</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>UPMC, Univ Paris 06, UMR 7144, Station Biologique de Roscoff, 29682 Roscoff, France</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>UBO, Institut Universitaire Européen de la Mer, 29280 Plouzané, France</addr-line>
</aff>
<aff id="aff4">
<label>4</label>
<addr-line>Laboratoire de Microbiologie, Géochimie et Ecologie Marines; Université de la Méditerranée;  Centre d&apos;Océanologie de Marseille, CNRS (UMR 6117), Campus de Luminy, case 901, 13288 Marseille Cedex 09, France</addr-line>
</aff>
<aff id="aff5">
<label>5</label>
<addr-line>CNRS, UMR 7621, Laboratoire d&apos;Océanographie Biologique de Banyuls, Avenue Fontaulé, BP44, 66650 Banyuls sur mer, France</addr-line>
</aff>
<aff id="aff6">
<label>6</label>
<addr-line>UPMC, Univ Paris 06, UMR 7621, Laboratoire ARAGO, Avenue Fontaulé, BP 44, 66650 Banyuls sur mer, France</addr-line>
</aff>
<pub-date pub-type="epub">
<day>20</day>
<month>11</month>
<year>2008</year>
</pub-date>
<volume>5</volume>
<issue>6</issue>
<fpage>1573</fpage>
<lpage>1586</lpage>
<permissions>
<copyright-statement>Copyright: &#x000a9; 2008 G. Mével et al.</copyright-statement>
<copyright-year>2008</copyright-year>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri"  xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions>
<self-uri xlink:href="https://bg.copernicus.org/articles/5/1573/2008/bg-5-1573-2008.html">This article is available from https://bg.copernicus.org/articles/5/1573/2008/bg-5-1573-2008.html</self-uri>
<self-uri xlink:href="https://bg.copernicus.org/articles/5/1573/2008/bg-5-1573-2008.pdf">The full text article is available as a PDF file from https://bg.copernicus.org/articles/5/1573/2008/bg-5-1573-2008.pdf</self-uri>
<abstract>
<p>We present the vertical and temporal dynamics of total &lt;i&gt;vs.&lt;/i&gt; particle-attached
bacterial abundance and activity over a 5 week period under summer to autumn
transition in NW Mediterranean Sea. At a weekly time scale, total bacterial
biomass and production in the euphotic layers was significantly correlated
with phytoplanktonic biomass. At an hourly time scale, total bacterial
biomass responded very rapidly to chlorophyll &lt;i&gt;a&lt;/i&gt; fluctuations, suggesting a
tight coupling between phytoplankton and bacteria for resource partitioning
during the summer-autumn transition. In contrast, no influence of diel
changes on bacterial parameters was detected. Episodic events such as
coastal water intrusions had a significant positive effect on total
bacterial abundance and production, whereas we could not detect any
influence of short wind events whatever the magnitude. Finally, we show that
particle-attached bacteria can represent a large proportion (up to 49%)
of the total bacterial activity in the euphotic layer but display rapid and
sporadic changes at hourly time scales. In the mesopelagic layers, bacterial
abundance and production linearly decreased with depth, except some
production peaks at 400–750 m. This study underlines the value of large
datasets covering different temporal scales to clarify the biogeochemical
role of bacteria in the cycling of organic matter in open seawater.</p>
</abstract>
<counts><page-count count="14"/></counts>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple"> Andersen, V. and Prieur, L.: One-month study in the open NW Mediterranean Sea (DYNAPROC experiment, May 1995): overview of the hydrobiological structures and effects of wind events, Deep-Sea Res. I, 47, 397–422, 2000. </mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple"> Azam, F., Fenchel, T., Field, J. G., Gray, J. S., and Meyer-Reil, L. A., Thingstad, F.: The ecological role of water-column microbes in the sea, Mar. Ecol. Prog. Ser., 10, 257–263, 1983. </mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple"> Billen, B., Servais, P. and Becquevort, S.: Dynamics of bacterioplankton in oligotrophic and eutrophic aquatic environments: bottom-up or top-down control?, Hydrobiologia, 207, 37–42, 1990. </mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple"> Bouvier, T., del Giorgio, P. A., and Gasol, J. M.: A comparative study of the cytometric characteristics of high and low nucleic-acid bacterioplankton cells from different aquatic ecosystems, Environ. Microbiol., 9, 2050–2066, 2007. </mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple"> Caron, D. A., Peele, E. R., Lim, E. R., and Dennett, M. R.: Picoplankton and nanoplankton and their trophic coupling in surface waters of the Sargasso Sea South of Bermuda, Limnol. Oceanogr., 44, 259–272, 1999. </mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple"> Cho, B. C. and Azam, F.: Biogeochemical significance of bacterial biomass in the ocean&apos;s euphotic zone, Mar. Ecol. Prog. Ser., 63, 253–259, 1990. </mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple"> Coffin, R. B., Connolly, J. P., and Harris, P. S.: Availability of dissolved organic carbon to bacterioplankton examined by oxygen utilization, Mar. Ecol. Prog. Ser., 9, 9–22, 1993. </mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple"> Cole, J. J., Findlay, S., and Pace, M. L.: Bacterial production in fresh and saltwater ecosystems: a cross-system overview, Mar. Ecol. Prog. Ser., 43, 1–10, 1988. </mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple"> Ducklow, H. W. and Carlson, C. A.: Oceanic bacterial production. edited by: Marshall, K. C., in: Advances in microbial ecology, Plenum Press, New York, 113–181, 1992. </mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple"> Ducklow, H. W., Kirchman, D. L. Quinby, H. L., Carlson, C. A., and Dam, H. G.: Stocks and dynamics of bacterioplankton carbon during the spring phytoplankton bloom in the eastern North Atlantic Ocean, Deep-Sea Res. II, 40, 245–263, 1993. </mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple"> Dufour, P. and Torreton, J. P.: Bottom-up control of bacterioplankton from eutrophic to oligotrophic sites in the North-Eastern tropical Atlantic Ocean, Deep-Sea Res. I,43, 1305–1320, 1996. </mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple"> Fukuda, R., Ogawa, H., Nagata, T., and Koike, I.: Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments, Appl. Environ. Microbiol., 64, 3352–3358, 1998. </mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple"> Gasol, J. M., Doval, M. D., Pinhassi, J., Calderon-Paz, J. I., Guixa-Boixareu, N., Vaqué, D., and Pedros-Alio, C.: Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean Sea, Mar. Ecol. Prog. Ser., 164, 107–124, 1998. </mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple"> Gasol, J. M. and Morán, X. A. G.: Effects of filtration on bacterial activity and picoplankton community structure as assessed by flow cytometry, Aquat. Microb. Ecol., 16, 251–264, 1999. </mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple"> Gasol, J. M., Zweifel, U. L., Peters, F., Fuhrman, J. A., and Hagström, A.: Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria, Appl. Environ. Microbiol., 65, 4475–4483, 1999. </mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple"> Gerdts, G., Wichels, A., Döpke, H., Klings, K. W., Gunkel, W., and Schütt, C.: 40-year long-term study of microbial parameters near Helgoland (German Bight, North Sea): historical view and future perspectives, Helgol. Mar. Res., 58, 230–242, 2004. </mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple"> Ghiglione, J. F., Mével, G., Pujo-Pay, M., Mousseau, L., Lebaron, P., and Goutx, M.: Diel and seasonal variations in abundance, activity and community structure of particle-attached and free-living bacteria in NW Mediterranean Sea, Microb. Ecol., 54, 217–231, 2007. </mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple"> Ghiglione, J. F., Palacios, C., Marty, J. C., Mével, G., Labrune, C., Conan, P., Pujo-Pay, M., Garcia, N., and Goutx, M.: Role of environmental factors for the vertical distribution (0–1000 m) of marine bacterial communities in the NW Mediterranean Sea, Biogeosciences, 5, 2008, in press. </mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple"> Harris, J. R. W., Stutt, E. D., and Turley, C. M.: Carbon flux in the northwest Mediterranean estimated from microbial production, Deep Sea Res. I, 48, 2631–2644, 2001. </mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple"> Haury, L. R., Yamazaki, H., and Itsweire, E. C.: Effects of turbulent shear flow on zooplankton distribution, Deep-Sea Res. II, 37, 447–461, 1990. </mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple"> Herndl, G. J. and Malacic, V.: Impact of the pycnocline layer on bacterioplankton diel and spatial variations in microbial parameters in the stratified water column of the Gulf of Trieste (Northern Adriatic Sea), Mar. Ecol. Prog. Ser., 38, 295–303, 1987. </mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple"> Hollibaugh, T., Wong, P. S., Murrell, M. C.: Similarity of particle- associated and free-living bacterial communities in northern San Francisco Bay, California, Aquat. Microb. Ecol., 21, 102–114, 2000. </mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple"> Hobbie, J. E., Daley, R. J., and Jasper, J.: Use of nucleopore filters for counting bacteria by fluorescence microscopy, Appl. Environ. Microbiol., 33, 1225–1228, 1977. </mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple"> Karl, D. M., Knauer, G. A., and Martin, J. H.: Downward flux of particulate organic matter in the ocean: a particle decomposition paradox, Nature, 332, 438–441, 1988. </mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple"> Kiørboe, T.: Turbulence, phytoplankton cell size and the structure of pelagic food webs, Adv. Mar. Biol., 29, 1–72, 1993. </mixed-citation>
</ref>
<ref id="ref26">
<label>26</label><mixed-citation publication-type="other" xlink:type="simple"> Kirchman, D. L.: Leucine incorporation as a measure of biomass production by heterotrophic bacteria, edited by: Kemp, P. F., Sherr, B. F., Sherr, E. B. and Cole, J. J., in: Handbook of methods in aquatic microbial ecology, Lewis, Boca Raton, 509–512, 1993. </mixed-citation>
</ref>
<ref id="ref27">
<label>27</label><mixed-citation publication-type="other" xlink:type="simple"> Kirchman, D. L., K&apos;Ness, E. and, Hodson, R.: Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems, Appl. Environ. Microbio., 49, 599–607, 1985. </mixed-citation>
</ref>
<ref id="ref28">
<label>28</label><mixed-citation publication-type="other" xlink:type="simple"> Kuipers, B., Noort, G. J., Vosjan, J. H. and Herndl, G. J.: Diel periodicity of bacterioplankton in the euphotic zone of the subtropical Atlantic Ocean, Mar. Ecol. Prog. Ser., 201, 13–25, 2000. </mixed-citation>
</ref>
<ref id="ref29">
<label>29</label><mixed-citation publication-type="other" xlink:type="simple"> Lebaron, P., Servais, P., Baudoux, A. C., Bourrain, M., Courties, C., and Parthuisot, N.: Variations of bacterial-specific activity with cell size and nucleic acid content assessed by flow cytometry, Aquat. Microb. Ecol., 28, 131–140, 2002. </mixed-citation>
</ref>
<ref id="ref30">
<label>30</label><mixed-citation publication-type="other" xlink:type="simple"> Lemée, R., Rochelle-Newall, E., Van Wambeke, F., Pizay, M. D., Rinaldi, P., and Gattuso, J. P.: Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea, Aquat. Microb. Ecol., 29, 227–237, 2002. </mixed-citation>
</ref>
<ref id="ref31">
<label>31</label><mixed-citation publication-type="other" xlink:type="simple"> Longnecker, K., Sherr, B. F., and Sherr, E. B.: Activity and phylogenetic diversity of bacterial cells with high and low nucleic acid content and electron transport system activity in an upwelling ecosystem, Appl. Environ. Microbiol., 71, 7737–7749, 2005. </mixed-citation>
</ref>
<ref id="ref32">
<label>32</label><mixed-citation publication-type="other" xlink:type="simple"> Longnecker, K., Sherr, B. F., and Sherr, E. B.: Variation in cell-specific rates of leucine and thymidine incorporation by marine bacteria with high and with low nucleic acid content off Oregon coast, Aquat. Microb. Ecol., 43, 113–125, 2006. </mixed-citation>
</ref>
<ref id="ref33">
<label>33</label><mixed-citation publication-type="other" xlink:type="simple"> Marie, D., Partensky, F., Jacquet, S., and Vaulot, D.: Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR Green I, Appl. Environ. Microbiol., 63, 186–193, 1997. </mixed-citation>
</ref>
<ref id="ref34">
<label>34</label><mixed-citation publication-type="other" xlink:type="simple"> Marra, J., Bidigare, R. R., and Dickey, T. D.: Nutrients and mixing, chlorophyll and phytoplankton growth, Deep-Sea Res. II, 37, 127–143, 1990. </mixed-citation>
</ref>
<ref id="ref35">
<label>35</label><mixed-citation publication-type="other" xlink:type="simple"> Marty, J. C.: Studies at the DYFAMED (France JGOFS) Time-Series Station, N. W. Mediterranean Sea, Deep Sea Res. II, 49, special issue, 1963–1964, 2002. </mixed-citation>
</ref>
<ref id="ref36">
<label>36</label><mixed-citation publication-type="other" xlink:type="simple"> Marty, J. C., Chiavérini, J., Pizay, M. D., Avril, B.: Seasonal and interannual dynamics of nutrients and phytoplankton pigments in the western Mediterranean Sea at the DYFAMED time-series station (1991–1999), Deep-Sea Res. II, 49, 1965–1985, 2002. </mixed-citation>
</ref>
<ref id="ref37">
<label>37</label><mixed-citation publication-type="other" xlink:type="simple"> Marty, J. C., Garcia, N. and Raimbault, P.: Phytoplankton dynamics and primary production under late summer conditions in the NW Mediterranean Sea, Deep-Sea Res. I, 55, 1131–1149, 2008. </mixed-citation>
</ref>
<ref id="ref38">
<label>38</label><mixed-citation publication-type="other" xlink:type="simple"> Misic, C. and Fabiano, M.: Ectoenzymatic activity and its relationship to chlorophyll-$a$ and bacteria in the Gulf of Genoa (Ligurian Sea, NW Mediterranean), J. Mar. Systems, 60, 193–206, 2006. </mixed-citation>
</ref>
<ref id="ref39">
<label>39</label><mixed-citation publication-type="other" xlink:type="simple"> Morán, X. A. G., Bode, A., Suárez, L. A., and Nogueira, E.: Assessing the relevance of nucleic acid content as an indicator of marine bacterial activity, Aquat. Microb. Ecol., 46, 141–152, 2007. </mixed-citation>
</ref>
<ref id="ref40">
<label>40</label><mixed-citation publication-type="other" xlink:type="simple"> Pearce, I., Davidson, A. T., Bell, E. M., and Wright, S.: Seasonal changes in the concentration and metabolic activity of bacteria and viruses at an Antarctic coastal site, Aquat. Microb. Ecol., 47, 11–23, 2007. </mixed-citation>
</ref>
<ref id="ref41">
<label>41</label><mixed-citation publication-type="other" xlink:type="simple"> Pinhassi, J. and Hagström, A.: Seasonal succession in marine bacterio-plankton, Aquat. Microb. Ecol., 21, 245–256, 2000. </mixed-citation>
</ref>
<ref id="ref42">
<label>42</label><mixed-citation publication-type="other" xlink:type="simple"> Platt, T., Sathyendranath, S., Edwards, A. M., Broomhead, D. S., and Ulloa, O.: Nitrate supply and demand in the mixed layer of the ocean, Mar. Ecol. Prog. Ser., 254, 3–9, 2003. </mixed-citation>
</ref>
<ref id="ref43">
<label>43</label><mixed-citation publication-type="other" xlink:type="simple"> Platt, T., Sathyendranath, S., Ulloa, O., Harrison, W. G., Hoepffner, N., and Goes, J.: Nutrient control of phytoplankton photosynthesis in the western North-Atlantic, Nature, 356, 229–231, 1992. </mixed-citation>
</ref>
<ref id="ref44">
<label>44</label><mixed-citation publication-type="other" xlink:type="simple"> Riemann, L. and Winding, A.: Community dynamics of free-living and particle-associated bacterial assemblages during a freshwater phytoplankton bloom, Microb. Ecol., 42, 274–285, 2001. </mixed-citation>
</ref>
<ref id="ref45">
<label>45</label><mixed-citation publication-type="other" xlink:type="simple"> Robarts, R. D., Zohary, T., Waiser, M. J. and Yacobi, Y. Z.: Bacterial abundance, biomass and production in relation to phytoplankton biomass in the Levantine Basin of the southeastern Mediterranean Sea, Mar. Ecol. Prog. Ser., 137, 273–281, 1996. </mixed-citation>
</ref>
<ref id="ref46">
<label>46</label><mixed-citation publication-type="other" xlink:type="simple"> Sapp, M., Wichels, A., Wiltshire, K. H., and Gerdts, G.: Bacterial community dynamics during the winter-spring transition in the North Sea, FEMS Microbiol. Ecol., 59, 622–637, 2007. </mixed-citation>
</ref>
<ref id="ref47">
<label>47</label><mixed-citation publication-type="other" xlink:type="simple"> Scharek, R. and Latasa, M.: Growth, grazing and carbon flux of high and low nucleic acid bacteria differ in surface and deep chlorophyll maximum layers in the NW Mediterranean Sea, Aquat. Microb. Ecol., 46, 153–161, 2007. </mixed-citation>
</ref>
<ref id="ref48">
<label>48</label><mixed-citation publication-type="other" xlink:type="simple"> Servais, P., Casamayor, E. O., Courties, C., Catala, P., Parthuisot, N., and Lebaron, P.: Activity and diversity of bacterial cells with high and low nucleic acid content, Aquat. Microb. Ecol., 33, 41–51, 2003. </mixed-citation>
</ref>
<ref id="ref49">
<label>49</label><mixed-citation publication-type="other" xlink:type="simple"> Sherr, E. B., Sherr, B. F., and Longnecker, K.: Distribution of bacterial abundance and cell-specific nucleic acid content in the Northeast Pacific Ocean, Deep-Sea Res. I, 53, 713–725, 2006. </mixed-citation>
</ref>
<ref id="ref50">
<label>50</label><mixed-citation publication-type="other" xlink:type="simple"> Shiah, F. K. and Ducklow, H. W.: Temperature regulation of heterotrophic bacterioplankton abundance, production and specific growth rate in Chesapeake Bay, Limnol. Oceanogr., 39, 1243–1258, 1994. </mixed-citation>
</ref>
<ref id="ref51">
<label>51</label><mixed-citation publication-type="other" xlink:type="simple"> Simon, M., Grossart, H. P., Schweitzer, B., and Ploug, H.: Microbial ecology of organic aggregates in aquatic ecosystems, Aquat. Microb. Ecol., 28, 175–211, 2002. </mixed-citation>
</ref>
<ref id="ref52">
<label>52</label><mixed-citation publication-type="other" xlink:type="simple"> Smith, D. C. and Azam, F.: A simple, economical method for measuring bacterial protein synthesis rates in seawater using &lt;sup&gt;3&lt;/sup&gt;H-leucine, Mar. Microb. Food Webs, 6, 107–114, 1992. </mixed-citation>
</ref>
<ref id="ref53">
<label>53</label><mixed-citation publication-type="other" xlink:type="simple"> Socal, G., Boldrin, A., Bianchi, F., Civitarese, A., Rabitti, S., Totti, C., and Turchetto, M.: Nutrient, particulate matter and phytoplankton variability in the photic layer of the Otranto strait, J. Mar. Systems, 20, 381–398, 1999. </mixed-citation>
</ref>
<ref id="ref54">
<label>54</label><mixed-citation publication-type="other" xlink:type="simple"> Tamburini, C., Garcin, J., Ragot, M., and Bianchi, A.: Biopolymer hydrolysis and bacterial production under ambient hydrostatic pressure through a 2000 m water column in the NW Mediterranean, Deep-Sea Res. II, 49, 2109–2123, 2002. </mixed-citation>
</ref>
<ref id="ref55">
<label>55</label><mixed-citation publication-type="other" xlink:type="simple"> Tanaka, T. and Rassoulzadegan, F.: Full-depth profile (0–2000 m) of bacteria, heterotrophic nanoflagellates and ciliates in the NW Mediterranean Sea: vertical partitioning of microbial trophic structures. Deep Sea Res II, 49, 2093–2107, 2002. </mixed-citation>
</ref>
<ref id="ref56">
<label>56</label><mixed-citation publication-type="other" xlink:type="simple"> Tanaka, T. and Rassoulzadegan, F.: Vertical and seasonal variations of bacterial abundance and production in the mesopelagic layer of the NW Mediterranean Sea: bottom-up and top-down controls, Deep-Sea Res. I, 51, 531–544, 2004. </mixed-citation>
</ref>
<ref id="ref57">
<label>57</label><mixed-citation publication-type="other" xlink:type="simple"> Turley, C. and Lochte, K.: Diel changes in the specific growth rate and mean cell volume of natural bacterial communities in two different water masses in the Irish Sea. Microb. Ecol., 12, 271–282, 1986. </mixed-citation>
</ref>
<ref id="ref58">
<label>58</label><mixed-citation publication-type="other" xlink:type="simple"> Turley, C. M. and Stutt, E. D.: Depth-related cell-specific bacterial leucine incorporation rates on particles and its biogeochemical significance in the Northwest Mediterranean, Limnol. Oceanogr., 45, 419–425, 2000. </mixed-citation>
</ref>
<ref id="ref59">
<label>59</label><mixed-citation publication-type="other" xlink:type="simple"> Van Wambeke, F., Christaki, U., Bianchi, M., Psarra, S., and Tselepides, A.: Heterotrophic bacterial production in the Cretan Sea (NE Mediterranean), Prog. Oceanogr., 46, 205–216, 2000. </mixed-citation>
</ref>
<ref id="ref60">
<label>60</label><mixed-citation publication-type="other" xlink:type="simple"> Van Wambeke, F., Goutx, M., Striby, L., Sempéré, R., and Vidussi, F.: Bacterial dynamics during the transition from spring bloom to oligotrophy in the northwestern Mediterranean Sea: relationships with particulate detritus and dissolved organic matter, Mar. Ecol. Prog. Ser., 212, 89–105, 2001. </mixed-citation>
</ref>
<ref id="ref61">
<label>61</label><mixed-citation publication-type="other" xlink:type="simple"> Van Wambeke, F., Heussner, S., Diaz, F., Raimbault, P., and Conan, P.: Small-scale variability in the coupling/uncoupling of bacteria, phytoplankton and organic carbon fluxes along the continental margin of the Gulf of Lions, Northwestern Mediterranean Sea, J. Mar. Systems, 33–34, 411–429, 2002. </mixed-citation>
</ref>
<ref id="ref62">
<label>62</label><mixed-citation publication-type="other" xlink:type="simple"> Vaulot, D.: CYTOPC: Processing software for flow cytometric data, Signal and Noise, 2, 8, 1989. </mixed-citation>
</ref>
<ref id="ref63">
<label>63</label><mixed-citation publication-type="other" xlink:type="simple"> Velji, M. I. and Albright, L. J.: Improved sample preparation for enumeration of aggregated aquatic substrate bacteria, edited by: Kemp, P. F., Sherr, B. F., Sherr, E. B. and Cole, J. J., in: Handbook of methods in aquatic microbial ecology, Lewis, Boca Raton, 139–142, 1993. </mixed-citation>
</ref>
<ref id="ref64">
<label>64</label><mixed-citation publication-type="other" xlink:type="simple"> Vidussi, F., Marty, J. C., and Chiaverini, J.: Phytoplankton pigment variations during the transition from spring bloom to oligotrophy in the Northwestern Mediterranean Sea, Deep-Sea Res. I, 47, 423–445, 2000. </mixed-citation>
</ref>
<ref id="ref65">
<label>65</label><mixed-citation publication-type="other" xlink:type="simple"> Weinbauer, M. G., Christaki, U., Nedoma, J., and Simek, K.: Comparing the effects os resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquat. Microb. Ecol., 31, 137–144, 2003. </mixed-citation>
</ref>
<ref id="ref66">
<label>66</label><mixed-citation publication-type="other" xlink:type="simple"> Wikner, J. and Hagström, Å.: Bacterioplankton intra-annual variability: importance of hydrography and competition, Aquat. Microb. Ecol., 20, 245–260, 1999. </mixed-citation>
</ref>
<ref id="ref67">
<label>67</label><mixed-citation publication-type="other" xlink:type="simple"> Winter, C., Herndl, G., and Weinbauer, M. G.: Diel cycles in viral infection of bacterioplankton in the North Sea, Aquat. Microb. Ecol., 35, 207–216, 2004. </mixed-citation>
</ref>
<ref id="ref68">
<label>68</label><mixed-citation publication-type="other" xlink:type="simple"> Worm, J., Gustavson, K., Garde, K., Borch, N. H., and Søndergaard, M.: Functional similarity of attached and free-living bacteria during freshwater phytoplankton blooms, Aquat. Microb. Ecol., 25, 103–111, 2001. </mixed-citation>
</ref>
<ref id="ref69">
<label>69</label><mixed-citation publication-type="other" xlink:type="simple"> Wu, Y., Platt, T., Tang, C. C. L., and Sathyendranath, S.: Short-term changes in chlorophyll distribution in response to a moving storm: a modeling study, Mar. Ecol. Prog. Ser., 335, 57–68, 2007. </mixed-citation>
</ref>
<ref id="ref70">
<label>70</label><mixed-citation publication-type="other" xlink:type="simple"> Zubkov, M. V., Tarran, G. A., and Burkill, P. H.: Bacterioplankton of low and high DNA content in the suboxic waters of the Arabian Sea and the Gulf of Oman: abundance and amino acid uptake, Aquat. Microb. Ecol., 43, 23–32, 2006. </mixed-citation>
</ref>
</ref-list>
</back>
</article>