Journal cover Journal topic
Biogeosciences An interactive open-access journal of the European Geosciences Union
Journal topic

Journal metrics

IF value: 3.480
IF 5-year value: 4.194
IF 5-year
CiteScore value: 6.7
SNIP value: 1.143
IPP value: 3.65
SJR value: 1.761
Scimago H <br class='widget-line-break'>index value: 118
Scimago H
h5-index value: 60
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.

  21 Jul 2020

21 Jul 2020

Review status
A revised version of this preprint is currently under review for the journal BG.

Biotic and abiotic transformation of amino acids in cloud water: Experimental studies and atmospheric implications

Saly Jaber, Muriel Joly, Maxence Brissy, Martin Leremboure, Amina Khaled, Barbara Ervens, and Anne-Marie Delort Saly Jaber et al.
  • Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut de Chimie de Clermont-Ferrand, F-63000 Clermont-Ferrand, France

Abstract. The interest for organic nitrogen and particularly for quantifying and studying the fate of amino acids (AA) has been growing in the atmospheric science community. However very little is known about biotic and abiotic transformation mechanisms of amino acids in clouds.

In this work, we measured the biotransformation rates of 18 amino acids with four bacterial strains (Pseudomonas graminis PDD-13b-3, Rhodococcus enclensis PDD-23b-28, Sphingomonas PDD-32b-11 and Pseudomonas syringae PDD-32b-74) isolated from cloud water and representative of this environment. At the same time, we also determined the abiotic (chemical, OH radical) transformation rates within the same solutions mimicking the composition of cloud water. We used a new approach by UPLC-HRMS to quantify free AA directly in the artificial cloud water medium without concentration and derivatization.

The experimentally-derived transformation rates were used to compare their relative importance under atmospheric conditions and compared to the chemical loss rates based on kinetic data of amino acid oxidation in the aqueous phase. This analysis shows that previous estimates overestimated the abiotic degradation rates, and thus underestimated the lifetime of amino acids in the atmosphere as they only considered loss processes but did not take into account the potential transformation of amino acids into each other.

Saly Jaber et al.

Interactive discussion

Status: final response (author comments only)
Status: final response (author comments only)
AC: Author comment | RC: Referee comment | SC: Short comment | EC: Editor comment

Saly Jaber et al.

Saly Jaber et al.


Total article views: 292 (including HTML, PDF, and XML)
HTML PDF XML Total Supplement BibTeX EndNote
197 80 15 292 36 8 12
  • HTML: 197
  • PDF: 80
  • XML: 15
  • Total: 292
  • Supplement: 36
  • BibTeX: 8
  • EndNote: 12
Views and downloads (calculated since 21 Jul 2020)
Cumulative views and downloads (calculated since 21 Jul 2020)

Viewed (geographical distribution)

Total article views: 232 (including HTML, PDF, and XML) Thereof 232 with geography defined and 0 with unknown origin.
Country # Views %
  • 1



No saved metrics found.


No discussed metrics found.
Latest update: 23 Nov 2020
Publications Copernicus
Short summary
Our study is of interest to atmospheric scientists and environmental microbiologists as we show that clouds can be considered a medium where bacteria efficiently degrade and transform amino acids, in competition to chemical processes. As current atmospheric multiphase models are restricted to chemical degradation of organic compounds, our conclusions motivate further model development.
Our study is of interest to atmospheric scientists and environmental microbiologists as we show...