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Volume 12, issue 13
Biogeosciences, 12, 4149–4159, 2015
https://doi.org/10.5194/bg-12-4149-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.

Special issue: EUROSPEC – spectral sampling tools for vegetation biophysical...

Biogeosciences, 12, 4149–4159, 2015
https://doi.org/10.5194/bg-12-4149-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.

Research article 14 Jul 2015

Research article | 14 Jul 2015

Monitoring seasonal and diurnal changes in photosynthetic pigments with automated PRI and NDVI sensors

J. A. Gamon1,2, O. Kovalchuck1, C. Y. S. Wong1,a, A. Harris3, and S. R. Garrity4 J. A. Gamon et al.
  • 1Department of Earth & Atmospheric Sciences, 1-26 Earth Sciences Building, University of Alberta, Edmonton, Alberta, T6G 2E3, Canada
  • 2Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
  • 3Geography, School of Environment, Education and Development, University of Manchester, Manchester, UK
  • 4Decagon Devices, Inc., 2365 NE Hopkins Court, Pullman, Washington 99163, USA
  • acurrent address: Department of Biology, 3359 Mississauga Road, University of Toronto Mississauga, Mississauga, L5L 1C6, Canada

Abstract. The vegetation indices normalized difference vegetation index (NDVI) and photochemical reflectance index (PRI) provide indicators of pigmentation and photosynthetic activity that can be used to model photosynthesis from remote sensing with the light-use-efficiency model. To help develop and validate this approach, reliable proximal NDVI and PRI sensors have been needed. We tested new NDVI and PRI sensors, "spectral reflectance sensors" (SRS sensors; recently developed by Decagon Devices, during spring activation of photosynthetic activity in evergreen and deciduous stands. We also evaluated two methods of sensor cross-calibration – one that considered sky conditions (cloud cover) at midday only, and another that also considered diurnal sun angle effects. Cross-calibration clearly affected sensor agreement with independent measurements, with the best method dependent upon the study aim and time frame (seasonal vs. diurnal). The seasonal patterns of NDVI and PRI differed for evergreen and deciduous species, demonstrating the complementary nature of these two indices. Over the spring season, PRI was most strongly influenced by changing chlorophyll : carotenoid pool sizes, while over the diurnal timescale, PRI was most affected by the xanthophyll cycle epoxidation state. This finding demonstrates that the SRS PRI sensors can resolve different processes affecting PRI over different timescales. The advent of small, inexpensive, automated PRI and NDVI sensors offers new ways to explore environmental and physiological constraints on photosynthesis, and may be particularly well suited for use at flux tower sites. Wider application of automated sensors could lead to improved integration of flux and remote sensing approaches for studying photosynthetic carbon uptake, and could help define the concept of contrasting vegetation optical types.

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NDVI and PRI sensors (SRS, Decagon Inc.) exhibited complementary responses during spring photosynthetic activation in evergreen and deciduous stands. In evergreens, PRI was most strongly influenced by changing chlorophyll:carotenoid pool sizes over the several weeks of the study, while it was most affected by xanthophyll cycle pigment activity at the diurnal timescale. These automated PRI and NDVI sensors offer new ways to explore environmental and physiological constraints on photosynthesis.
NDVI and PRI sensors (SRS, Decagon Inc.) exhibited complementary responses during spring...
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