Articles | Volume 11, issue 8
https://doi.org/10.5194/bg-11-2131-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-2131-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Diversity and distribution of amoA-type nitrifying and nirS-type denitrifying microbial communities in the Yangtze River estuary
Y. Zhang
Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, China
State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, China
X. Xie
Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, China
State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, China
N. Jiao
Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, China
State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, China
S. S.-Y. Hsiao
Earth System Science Program, Taiwan International Graduate Program, Research Center for Environmental Changes, Academia Sinica, Taipei, Taiwan
S.-J. Kao
Earth System Science Program, Taiwan International Graduate Program, Research Center for Environmental Changes, Academia Sinica, Taipei, Taiwan
State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, China
Viewed
Total article views: 5,974 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 15 Nov 2013)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
2,766 | 3,060 | 148 | 5,974 | 114 | 120 |
- HTML: 2,766
- PDF: 3,060
- XML: 148
- Total: 5,974
- BibTeX: 114
- EndNote: 120
Total article views: 4,994 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 16 Apr 2014)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
2,301 | 2,583 | 110 | 4,994 | 103 | 117 |
- HTML: 2,301
- PDF: 2,583
- XML: 110
- Total: 4,994
- BibTeX: 103
- EndNote: 117
Total article views: 980 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 15 Nov 2013)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
465 | 477 | 38 | 980 | 11 | 3 |
- HTML: 465
- PDF: 477
- XML: 38
- Total: 980
- BibTeX: 11
- EndNote: 3
Cited
60 citations as recorded by crossref.
- Gradually Cooling of the Yellow Sea Warm Current Driven by Tropical Pacific Subsurface Water Temperature Changes Over the Past 5 kyr D. Li et al. 10.1029/2021GL093534
- Processes and Microorganisms Involved in the Marine Nitrogen Cycle: Knowledge and Gaps S. Pajares & R. Ramos 10.3389/fmars.2019.00739
- Nitrogen removal processes coupled with nitrification in coastal sediments off the north East China Sea Y. Chang et al. 10.1007/s11368-021-02964-5
- Genome-Resolved Metagenomic Insights into Massive Seasonal Ammonia-Oxidizing Archaea Blooms in San Francisco Bay A. Rasmussen et al. 10.1128/msystems.01270-21
- Distribution and Activity of Ammonia-Oxidizers on the Size-Fractionated Particles in the Pearl River Estuary L. Ma et al. 10.3389/fmars.2021.685955
- Influence of organic particle addition on nitrification rates and ammonium oxidiser abundances in Baltic seawater S. Kache et al. 10.3354/meps13797
- Nitrification and denitrification in recirculating aquaculture systems: the processes and players P. Preena et al. 10.1111/raq.12558
- Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas S. Yu et al. 10.3389/fmicb.2016.00137
- Distinct Features of Sedimentary Archaeal Communities in Hypoxia and Non-Hypoxia Regions off the Changjiang River Estuary D. Zou et al. 10.1128/spectrum.01947-22
- Nitrogen loss by nirS-type denitrifying bacterial communities in eutrophic coastal sediments X. Liu et al. 10.1016/j.ibiod.2020.104955
- Particle-associated denitrification is the primary source of N2O in oxic coastal waters X. Wan et al. 10.1038/s41467-023-43997-3
- River plume and bottom boundary layer – Hotspots for nitrification in a coastal bay? I. Bartl et al. 10.1016/j.ecss.2018.04.023
- The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene M. Yazdani Foshtomi et al. 10.1371/journal.pone.0192391
- Spatio-temporal shifts in community structure and activity of nirS-type denitrifiers in the sediment cores of Pearl River Estuary H. Xie et al. 10.1371/journal.pone.0231271
- Effect of thermal stratification on denitrifying bacterial community in a deep drinking water reservoir H. Zhang et al. 10.1016/j.jhydrol.2021.126090
- The impact of algal blooms on promoting in-situ N2O emissions: A case in Zhanjiang bay, China S. Cai et al. 10.1016/j.jenvman.2024.120935
- Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen-cycling genes at two contrasting estuarine sites E. Happel et al. 10.1093/femsec/fiz123
- nirS-Encoding denitrifier community composition, distribution, and abundance along the coastal wetlands of China J. Gao et al. 10.1007/s00253-016-7659-5
- Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment Y. Wang et al. 10.3389/fmicb.2017.01153
- Extensive nitrification and active ammonia oxidizers in two contrasting coastal systems of the Baltic Sea E. Happel et al. 10.1111/1462-2920.14293
- Niche differentiation of ammonia and nitrite oxidizers along a salinity gradient from the Pearl River estuary to the South China Sea L. Hou et al. 10.5194/bg-15-5169-2018
- Nitrogen cycling in China marginal seas: Progress and challenges S. Wu et al. 10.1016/j.marchem.2024.104421
- Microbial Diversity and Community Structure of Sulfate-Reducing and Sulfur-Oxidizing Bacteria in Sediment Cores from the East China Sea Y. Zhang et al. 10.3389/fmicb.2017.02133
- Using water age to study the biogeochemistry of nutrients in a large-river estuary and the adjacent shelf area L. Gao & H. Zong 10.1016/j.jmarsys.2020.103469
- The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation M. Yazdani Foshtomi et al. 10.1371/journal.pone.0130116
- Vertical distribution of isoprenoid GDGTs in suspended particles from the East China Sea shelf and implications for sedimentaryTEX86Hrecords Y. Wang et al. 10.1016/j.orggeochem.2019.07.004
- Linking biochemical properties of particles to particle‐attached and free‐living bacterial community structure along the particle density gradient from freshwater to open ocean Y. Zhang et al. 10.1002/2016JG003390
- Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes J. Damashek & C. Francis 10.1007/s12237-017-0306-2
- Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen Y. Lipsewers et al. 10.3389/fmicb.2016.01661
- Microbial Diversity and Nitrogen Cycling in Peat and Marine Soils: A Review A. Soratur et al. 10.3390/microbiolres15020052
- Dual Isotope Measurements Reveal Zoning of Nitrate Processing in the Summer Changjiang (Yangtze) River Plume X. Yan et al. 10.1002/2017GL075951
- Multi-scale factors affecting composition, diversity, and abundance of sediment denitrifying microorganisms in Yangtze lakes X. Jiang et al. 10.1007/s00253-017-8537-5
- Effects of Feldspathic Sandstone Addition on Microbial Biomass, Soil Enzyme Activity, and Bacterial Community Structure of Sandy Soil J. Han et al. 10.1080/01490451.2023.2272619
- Enhanced nitrogen loss from rivers through coupled nitrification-denitrification caused by suspended sediment X. Xia et al. 10.1016/j.scitotenv.2016.10.181
- Bacterial communities along a 4,500-meter elevation gradient in the sediment of the Yangtze River: what are the driving factors? W. Zhang et al. 10.5004/dwt.2020.24875
- Effects of illumination on nirS denitrifying and anammox bacteria in the rhizosphere of submerged macrophytes Y. Xiao et al. 10.1016/j.scitotenv.2020.143420
- Variable Nitrification Rates Across Environmental Gradients in Turbid, Nutrient-Rich Estuary Waters of San Francisco Bay J. Damashek et al. 10.1007/s12237-016-0071-7
- Water residence time controls seasonal nitrous oxide budget in a semi-enclosed bay: Insights from an improvement estimation method S. Cai et al. 10.1016/j.marpolbul.2024.116701
- Dark Ammonium Transformations in the Pearl River Estuary During Summer L. Chen et al. 10.1029/2019JG005596
- Variation of Isoprenoid GDGTs in the Stratified Marine Water Column: Implications for GDGT-Based TEX86 Paleothermometry J. Guo et al. 10.3389/fmars.2021.715708
- Contrasting temporal patterns in ammonia-oxidizing archaeal community dynamics in two peri-alpine lakes with different trophic status T. Pollet et al. 10.3354/ame01861
- Early diagenesis and authigenic mineral formation in mobile muds of the Changjiang Estuary and adjacent shelf B. Zhao et al. 10.1016/j.jmarsys.2017.03.001
- Potential contributions of nitrifiers and denitrifiers to nitrous oxide sources and sinks in China's estuarine and coastal areas X. Dai et al. 10.5194/bg-19-3757-2022
- Processes of coastal ecosystem carbon sequestration and approaches for increasing carbon sink Y. Zhang et al. 10.1007/s11430-016-9010-9
- Distribution characteristics of size-fractionated Chlorophyll a in the coastal area of the Leizhou Peninsula in winter H. Xu et al. 10.3389/fmars.2024.1473950
- Denitrification and anammox: Understanding nitrogen loss from Yangtze Estuary to the east China sea (ECS) J. Wang et al. 10.1016/j.envpol.2019.06.025
- Shifts in the Community Dynamics and Activity of Ammonia‐Oxidizing Prokaryotes Along the Yangtze Estuarine Salinity Gradient J. Gao et al. 10.1029/2017JG004182
- Genes involved in carbon, nitrogen, and sulfur cycling in an important estuarine ecosystem show coherent shifts in response to changes in environmental conditions S. Preheim et al. 10.1002/lno.12731
- Insights into the Variations of Hao-Dependent Nitrifying and Nir-Dependent Denitrifying Microbial Communities in Ammonium-Graduated Lake Environments R. Zhao et al. 10.3390/app9163229
- Major role of ammonia-oxidizing bacteria in N<sub>2</sub>O production in the Pearl River estuary L. Ma et al. 10.5194/bg-16-4765-2019
- Sedimentary processes dominate nitrous oxide production and emission in the hypoxic zone off the Changjiang River estuary J. Yang et al. 10.1016/j.scitotenv.2022.154042
- Overlooked contribution of water column to nitrogen removal in estuarine turbidity maximum zone (TMZ) Y. Zheng et al. 10.1016/j.scitotenv.2021.147736
- Community Composition and Transcriptional Activity of Ammonia-Oxidizing Prokaryotes of Seagrass Thalassia hemprichii in Coral Reef Ecosystems J. Ling et al. 10.3389/fmicb.2018.00007
- Metagenomic data highlight shifted nitrogen regime induced by wetland reclamation K. Li et al. 10.1007/s00374-024-01820-1
- Hurricane Disturbance Stimulated Nitrification and Altered Ammonia Oxidizer Community Structure in Lake Okeechobee and St. Lucie Estuary (Florida) J. Hampel et al. 10.3389/fmicb.2020.01541
- Hatchery technology restores the spawning ground of phytophilic fish in the urban river of Yangtze Estuary, China X. Huang et al. 10.1007/s11252-020-00971-x
- How did the bacterial community respond to the level of urbanization along the Yangtze River? Y. Li et al. 10.1039/C9EM00399A
- Illumina MiSeq sequencing reveals the community composition of NirS-Type and NirK-Type denitrifiers in Zhoucun reservoir – a large shallow eutrophic reservoir in northern China S. Zhou et al. 10.1039/C6RA18017E
- Spatial-temporal dynamics of N-cycle functional genes in a temperate Atlantic estuary (Douro, Portugal) P. Salgado et al. 10.3354/ame01935
- Effect of mixed microbial culture addition on enhanced river water quality: Pollutant removal and microbial community characteristics V. Tang et al. 10.1016/j.eti.2020.100707
59 citations as recorded by crossref.
- Gradually Cooling of the Yellow Sea Warm Current Driven by Tropical Pacific Subsurface Water Temperature Changes Over the Past 5 kyr D. Li et al. 10.1029/2021GL093534
- Processes and Microorganisms Involved in the Marine Nitrogen Cycle: Knowledge and Gaps S. Pajares & R. Ramos 10.3389/fmars.2019.00739
- Nitrogen removal processes coupled with nitrification in coastal sediments off the north East China Sea Y. Chang et al. 10.1007/s11368-021-02964-5
- Genome-Resolved Metagenomic Insights into Massive Seasonal Ammonia-Oxidizing Archaea Blooms in San Francisco Bay A. Rasmussen et al. 10.1128/msystems.01270-21
- Distribution and Activity of Ammonia-Oxidizers on the Size-Fractionated Particles in the Pearl River Estuary L. Ma et al. 10.3389/fmars.2021.685955
- Influence of organic particle addition on nitrification rates and ammonium oxidiser abundances in Baltic seawater S. Kache et al. 10.3354/meps13797
- Nitrification and denitrification in recirculating aquaculture systems: the processes and players P. Preena et al. 10.1111/raq.12558
- Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas S. Yu et al. 10.3389/fmicb.2016.00137
- Distinct Features of Sedimentary Archaeal Communities in Hypoxia and Non-Hypoxia Regions off the Changjiang River Estuary D. Zou et al. 10.1128/spectrum.01947-22
- Nitrogen loss by nirS-type denitrifying bacterial communities in eutrophic coastal sediments X. Liu et al. 10.1016/j.ibiod.2020.104955
- Particle-associated denitrification is the primary source of N2O in oxic coastal waters X. Wan et al. 10.1038/s41467-023-43997-3
- River plume and bottom boundary layer – Hotspots for nitrification in a coastal bay? I. Bartl et al. 10.1016/j.ecss.2018.04.023
- The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene M. Yazdani Foshtomi et al. 10.1371/journal.pone.0192391
- Spatio-temporal shifts in community structure and activity of nirS-type denitrifiers in the sediment cores of Pearl River Estuary H. Xie et al. 10.1371/journal.pone.0231271
- Effect of thermal stratification on denitrifying bacterial community in a deep drinking water reservoir H. Zhang et al. 10.1016/j.jhydrol.2021.126090
- The impact of algal blooms on promoting in-situ N2O emissions: A case in Zhanjiang bay, China S. Cai et al. 10.1016/j.jenvman.2024.120935
- Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen-cycling genes at two contrasting estuarine sites E. Happel et al. 10.1093/femsec/fiz123
- nirS-Encoding denitrifier community composition, distribution, and abundance along the coastal wetlands of China J. Gao et al. 10.1007/s00253-016-7659-5
- Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment Y. Wang et al. 10.3389/fmicb.2017.01153
- Extensive nitrification and active ammonia oxidizers in two contrasting coastal systems of the Baltic Sea E. Happel et al. 10.1111/1462-2920.14293
- Niche differentiation of ammonia and nitrite oxidizers along a salinity gradient from the Pearl River estuary to the South China Sea L. Hou et al. 10.5194/bg-15-5169-2018
- Nitrogen cycling in China marginal seas: Progress and challenges S. Wu et al. 10.1016/j.marchem.2024.104421
- Microbial Diversity and Community Structure of Sulfate-Reducing and Sulfur-Oxidizing Bacteria in Sediment Cores from the East China Sea Y. Zhang et al. 10.3389/fmicb.2017.02133
- Using water age to study the biogeochemistry of nutrients in a large-river estuary and the adjacent shelf area L. Gao & H. Zong 10.1016/j.jmarsys.2020.103469
- The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation M. Yazdani Foshtomi et al. 10.1371/journal.pone.0130116
- Vertical distribution of isoprenoid GDGTs in suspended particles from the East China Sea shelf and implications for sedimentaryTEX86Hrecords Y. Wang et al. 10.1016/j.orggeochem.2019.07.004
- Linking biochemical properties of particles to particle‐attached and free‐living bacterial community structure along the particle density gradient from freshwater to open ocean Y. Zhang et al. 10.1002/2016JG003390
- Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes J. Damashek & C. Francis 10.1007/s12237-017-0306-2
- Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen Y. Lipsewers et al. 10.3389/fmicb.2016.01661
- Microbial Diversity and Nitrogen Cycling in Peat and Marine Soils: A Review A. Soratur et al. 10.3390/microbiolres15020052
- Dual Isotope Measurements Reveal Zoning of Nitrate Processing in the Summer Changjiang (Yangtze) River Plume X. Yan et al. 10.1002/2017GL075951
- Multi-scale factors affecting composition, diversity, and abundance of sediment denitrifying microorganisms in Yangtze lakes X. Jiang et al. 10.1007/s00253-017-8537-5
- Effects of Feldspathic Sandstone Addition on Microbial Biomass, Soil Enzyme Activity, and Bacterial Community Structure of Sandy Soil J. Han et al. 10.1080/01490451.2023.2272619
- Enhanced nitrogen loss from rivers through coupled nitrification-denitrification caused by suspended sediment X. Xia et al. 10.1016/j.scitotenv.2016.10.181
- Bacterial communities along a 4,500-meter elevation gradient in the sediment of the Yangtze River: what are the driving factors? W. Zhang et al. 10.5004/dwt.2020.24875
- Effects of illumination on nirS denitrifying and anammox bacteria in the rhizosphere of submerged macrophytes Y. Xiao et al. 10.1016/j.scitotenv.2020.143420
- Variable Nitrification Rates Across Environmental Gradients in Turbid, Nutrient-Rich Estuary Waters of San Francisco Bay J. Damashek et al. 10.1007/s12237-016-0071-7
- Water residence time controls seasonal nitrous oxide budget in a semi-enclosed bay: Insights from an improvement estimation method S. Cai et al. 10.1016/j.marpolbul.2024.116701
- Dark Ammonium Transformations in the Pearl River Estuary During Summer L. Chen et al. 10.1029/2019JG005596
- Variation of Isoprenoid GDGTs in the Stratified Marine Water Column: Implications for GDGT-Based TEX86 Paleothermometry J. Guo et al. 10.3389/fmars.2021.715708
- Contrasting temporal patterns in ammonia-oxidizing archaeal community dynamics in two peri-alpine lakes with different trophic status T. Pollet et al. 10.3354/ame01861
- Early diagenesis and authigenic mineral formation in mobile muds of the Changjiang Estuary and adjacent shelf B. Zhao et al. 10.1016/j.jmarsys.2017.03.001
- Potential contributions of nitrifiers and denitrifiers to nitrous oxide sources and sinks in China's estuarine and coastal areas X. Dai et al. 10.5194/bg-19-3757-2022
- Processes of coastal ecosystem carbon sequestration and approaches for increasing carbon sink Y. Zhang et al. 10.1007/s11430-016-9010-9
- Distribution characteristics of size-fractionated Chlorophyll a in the coastal area of the Leizhou Peninsula in winter H. Xu et al. 10.3389/fmars.2024.1473950
- Denitrification and anammox: Understanding nitrogen loss from Yangtze Estuary to the east China sea (ECS) J. Wang et al. 10.1016/j.envpol.2019.06.025
- Shifts in the Community Dynamics and Activity of Ammonia‐Oxidizing Prokaryotes Along the Yangtze Estuarine Salinity Gradient J. Gao et al. 10.1029/2017JG004182
- Genes involved in carbon, nitrogen, and sulfur cycling in an important estuarine ecosystem show coherent shifts in response to changes in environmental conditions S. Preheim et al. 10.1002/lno.12731
- Insights into the Variations of Hao-Dependent Nitrifying and Nir-Dependent Denitrifying Microbial Communities in Ammonium-Graduated Lake Environments R. Zhao et al. 10.3390/app9163229
- Major role of ammonia-oxidizing bacteria in N<sub>2</sub>O production in the Pearl River estuary L. Ma et al. 10.5194/bg-16-4765-2019
- Sedimentary processes dominate nitrous oxide production and emission in the hypoxic zone off the Changjiang River estuary J. Yang et al. 10.1016/j.scitotenv.2022.154042
- Overlooked contribution of water column to nitrogen removal in estuarine turbidity maximum zone (TMZ) Y. Zheng et al. 10.1016/j.scitotenv.2021.147736
- Community Composition and Transcriptional Activity of Ammonia-Oxidizing Prokaryotes of Seagrass Thalassia hemprichii in Coral Reef Ecosystems J. Ling et al. 10.3389/fmicb.2018.00007
- Metagenomic data highlight shifted nitrogen regime induced by wetland reclamation K. Li et al. 10.1007/s00374-024-01820-1
- Hurricane Disturbance Stimulated Nitrification and Altered Ammonia Oxidizer Community Structure in Lake Okeechobee and St. Lucie Estuary (Florida) J. Hampel et al. 10.3389/fmicb.2020.01541
- Hatchery technology restores the spawning ground of phytophilic fish in the urban river of Yangtze Estuary, China X. Huang et al. 10.1007/s11252-020-00971-x
- How did the bacterial community respond to the level of urbanization along the Yangtze River? Y. Li et al. 10.1039/C9EM00399A
- Illumina MiSeq sequencing reveals the community composition of NirS-Type and NirK-Type denitrifiers in Zhoucun reservoir – a large shallow eutrophic reservoir in northern China S. Zhou et al. 10.1039/C6RA18017E
- Spatial-temporal dynamics of N-cycle functional genes in a temperate Atlantic estuary (Douro, Portugal) P. Salgado et al. 10.3354/ame01935
Saved (final revised paper)
Latest update: 13 Dec 2024
Altmetrics
Final-revised paper
Preprint