Articles | Volume 13, issue 1
Biogeosciences, 13, 175–190, 2016

Special issue: Freshwater ecosystems in changing permafrost landscapes

Biogeosciences, 13, 175–190, 2016

Research article 15 Jan 2016

Research article | 15 Jan 2016

Co-occurrence patterns in aquatic bacterial communities across changing permafrost landscapes

J. Comte1,2, C. Lovejoy1,2,3, S. Crevecoeur1,2, and W. F. Vincent1 J. Comte et al.
  • 1Centre d'études nordiques (CEN), Takuvik Joint International Laboratory & Département de biologie, Université Laval, Québec, QC G1V 0A6, Canada
  • 2Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, QC G1V 0A6, Canada
  • 3Québec Océan, Université Laval, Québec, QC G1V 0A6, Canada

Abstract. Permafrost thaw ponds and lakes are widespread across the northern landscape and may play a central role in global biogeochemical cycles, yet knowledge about their microbial ecology is limited. We sampled a set of thaw ponds and lakes as well as shallow rock-basin lakes that are located in distinct valleys along a north–south permafrost degradation gradient. We applied high-throughput sequencing of the 16S rRNA gene to determine co-occurrence patterns among bacterial taxa (operational taxonomic units, OTUs), and then analyzed these results relative to environmental variables to identify variables controlling bacterial community structure. Network analysis was applied to identify possible ecological linkages among the bacterial taxa and with abiotic and biotic variables. The results showed an overall high level of shared taxa among bacterial communities within each valley; however, the bacterial co-occurrence patterns were non-random, with evidence of habitat preferences. There were taxonomic differences in bacterial assemblages among the different valleys that were statistically related to dissolved organic carbon concentration, conductivity and phytoplankton biomass. Co-occurrence networks revealed complex interdependencies within the bacterioplankton communities and showed contrasting linkages to environmental conditions among the main bacterial phyla. The thaw pond networks were composed of a limited number of highly connected taxa. This “small world network” property would render the communities more robust to environmental change but vulnerable to the loss of microbial “keystone species”. These highly connected nodes (OTUs) in the network were not merely the numerically dominant taxa, and their loss would alter the organization of microbial consortia and ultimately the food web structure and functioning of these aquatic ecosystems.

Short summary
Thaw ponds and lakes varied in their bacterial community structure. A small number of taxa occurred in high abundance and dominated many of the communities. Nevertheless, there were taxonomic differences among different valleys implying some degree of habitat selection. Association networks were composed of a limited number of highly connected OTUs. These "keystone species" were not merely the abundant taxa, whose loss would greatly alter the structure and functioning of these aquatic ecosystem.
Final-revised paper