Articles | Volume 13, issue 14
https://doi.org/10.5194/bg-13-4135-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-13-4135-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
19 Jul 2016
Research article |
| 19 Jul 2016
Global analysis of gene expression dynamics within the marine microbial community during the VAHINE mesocosm experiment in the southwest Pacific
Ulrike Pfreundt
Institute for Biology III, University of Freiburg, Freiburg, Germany
Dina Spungin
Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat Gan, Israel
Sophie Bonnet
Aix Marseille Université, CNRS/INSU, Université de
Toulon, IRD, Mediterranean Institute of Oceanography (MIO), Marseille, France
Institut de Recherche pour le Développement, AMU/
CNRS/INSU, Université de Toulon, Mediterranean Institute of Oceanography
(MIO) Nouméa, New Caledonia, France
Ilana Berman-Frank
Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat Gan, Israel
Wolfgang R. Hess
CORRESPONDING AUTHOR
Institute for Biology III, University of Freiburg, Freiburg, Germany
Viewed
Total article views: 2,830 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 23 Feb 2016)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 1,480 | 1,127 | 223 | 2,830 | 249 | 118 | 119 |
- HTML: 1,480
- PDF: 1,127
- XML: 223
- Total: 2,830
- Supplement: 249
- BibTeX: 118
- EndNote: 119
Total article views: 2,294 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 19 Jul 2016)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 1,177 | 897 | 220 | 2,294 | 142 | 113 | 116 |
- HTML: 1,177
- PDF: 897
- XML: 220
- Total: 2,294
- Supplement: 142
- BibTeX: 113
- EndNote: 116
Total article views: 536 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 23 Feb 2016)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 303 | 230 | 3 | 536 | 107 | 5 | 3 |
- HTML: 303
- PDF: 230
- XML: 3
- Total: 536
- Supplement: 107
- BibTeX: 5
- EndNote: 3
Cited
17 citations as recorded by crossref.
- mdRNA-Seq analysis of marine microbial communities from the northern Red Sea S. Hou et al. 10.1038/srep35470
- Similar bacterial communities on healthy and injured skin of black tip reef sharks C. Pogoreutz et al. 10.1186/s42523-019-0011-5
- Single CSTR can be as effective as an SBR in selecting PHA-storing biomass from municipal wastewater-derived feedstock A. Brison et al. 10.1016/j.wroa.2023.100165
- Overlooked and widespread pennate diatom-diazotroph symbioses in the sea C. Schvarcz et al. 10.1038/s41467-022-28065-6
- Multiple Megaplasmids Confer Extremely High Levels of Metal Tolerance in Alteromonas Strains K. Cusick et al. 10.1128/AEM.01831-19
- Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages Z. Aanderud et al. 10.3389/fmicb.2018.01401
- Integrated metagenomic and metatranscriptomic analyses of ultraviolet disinfection effects on antibiotic resistance genes and bacterial communities during wastewater treatment S. Jia et al. 10.1007/s10646-020-02313-1
- Phytoplankton community structure in the VAHINE mesocosm experiment K. Leblanc et al. 10.5194/bg-13-5205-2016
- Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments S. Lott et al. 10.1016/j.jbiotec.2017.06.1203
- Winter mixing impacts gene expression in marine microbial populations in the Gulf of Aqaba D. Miller et al. 10.3354/ame01854
- Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise S. Hou et al. 10.1038/s41396-017-0034-4
- Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse D. Jiménez et al. 10.3389/fmicb.2018.00299
- A minimum set of regulators to thrive in the ocean S. Lambrecht et al. 10.1093/femsre/fuaa005
- Biogeochemical and biological impacts of diazotroph blooms in a low-nutrient, low-chlorophyll ecosystem: synthesis from the VAHINE mesocosm experiment (New Caledonia) S. Bonnet et al. 10.5194/bg-13-4461-2016
- Succession within the prokaryotic communities during the VAHINE mesocosms experiment in the New Caledonia lagoon U. Pfreundt et al. 10.5194/bg-13-2319-2016
- Heterotrophic bacterial production and metabolic balance during the VAHINE mesocosm experiment in the New Caledonia lagoon F. Van Wambeke et al. 10.5194/bg-13-3187-2016
- Introduction to the project VAHINE: VAriability of vertical and tropHIc transfer of diazotroph derived N in the south wEst Pacific S. Bonnet et al. 10.5194/bg-13-2803-2016
13 citations as recorded by crossref.
- mdRNA-Seq analysis of marine microbial communities from the northern Red Sea S. Hou et al. 10.1038/srep35470
- Similar bacterial communities on healthy and injured skin of black tip reef sharks C. Pogoreutz et al. 10.1186/s42523-019-0011-5
- Single CSTR can be as effective as an SBR in selecting PHA-storing biomass from municipal wastewater-derived feedstock A. Brison et al. 10.1016/j.wroa.2023.100165
- Overlooked and widespread pennate diatom-diazotroph symbioses in the sea C. Schvarcz et al. 10.1038/s41467-022-28065-6
- Multiple Megaplasmids Confer Extremely High Levels of Metal Tolerance in Alteromonas Strains K. Cusick et al. 10.1128/AEM.01831-19
- Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages Z. Aanderud et al. 10.3389/fmicb.2018.01401
- Integrated metagenomic and metatranscriptomic analyses of ultraviolet disinfection effects on antibiotic resistance genes and bacterial communities during wastewater treatment S. Jia et al. 10.1007/s10646-020-02313-1
- Phytoplankton community structure in the VAHINE mesocosm experiment K. Leblanc et al. 10.5194/bg-13-5205-2016
- Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments S. Lott et al. 10.1016/j.jbiotec.2017.06.1203
- Winter mixing impacts gene expression in marine microbial populations in the Gulf of Aqaba D. Miller et al. 10.3354/ame01854
- Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise S. Hou et al. 10.1038/s41396-017-0034-4
- Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse D. Jiménez et al. 10.3389/fmicb.2018.00299
- A minimum set of regulators to thrive in the ocean S. Lambrecht et al. 10.1093/femsre/fuaa005
4 citations as recorded by crossref.
- Biogeochemical and biological impacts of diazotroph blooms in a low-nutrient, low-chlorophyll ecosystem: synthesis from the VAHINE mesocosm experiment (New Caledonia) S. Bonnet et al. 10.5194/bg-13-4461-2016
- Succession within the prokaryotic communities during the VAHINE mesocosms experiment in the New Caledonia lagoon U. Pfreundt et al. 10.5194/bg-13-2319-2016
- Heterotrophic bacterial production and metabolic balance during the VAHINE mesocosm experiment in the New Caledonia lagoon F. Van Wambeke et al. 10.5194/bg-13-3187-2016
- Introduction to the project VAHINE: VAriability of vertical and tropHIc transfer of diazotroph derived N in the south wEst Pacific S. Bonnet et al. 10.5194/bg-13-2803-2016
Saved (preprint)
Latest update: 23 Nov 2024
Short summary
The VAHINE experiment in the New Caledonia lagoon (SW Pacific) targeted the dynamics of nutrient pools and fluxes, N2 fixation, and the composition and productivity of the microbial communities. To connect this information to the actual activities of diverse microbial taxa, we present the analysis of the community-wide gene expression for 23 days. The results from this experiment provide insight into the microbial activities in a low-nutrient, low-chlorophyll ecosystem and within a mesocosm.
The VAHINE experiment in the New Caledonia lagoon (SW Pacific) targeted the dynamics of nutrient...
Altmetrics
Final-revised paper
Preprint