Articles | Volume 14, issue 3
https://doi.org/10.5194/bg-14-575-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/bg-14-575-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Sedimentary ancient DNA and pollen reveal the composition of plant organic matter in Late Quaternary permafrost sediments of the Buor Khaya Peninsula (north-eastern Siberia)
Heike Hildegard Zimmermann
CORRESPONDING AUTHOR
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Institute of Earth and Environmental Sciences, University of Potsdam,
Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
Elena Raschke
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Arctic and Antarctic Research Institute, Bering St. 38, 199397 St.
Petersburg, Russia
Laura Saskia Epp
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Kathleen Rosmarie Stoof-Leichsenring
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Georg Schwamborn
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Lutz Schirrmeister
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Pier Paul Overduin
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Ulrike Herzschuh
CORRESPONDING AUTHOR
Alfred Wegener Institute Helmholtz Centre for Polar and Marine
Research, Periglacial Research Unit, Telegrafenberg A43, 14473 Potsdam,
Germany
Institute of Earth and Environmental Sciences, University of Potsdam,
Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
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Cited
44 citations as recorded by crossref.
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- The MIS 3–2 environments of the middle Kolyma Basin: implications for the Ice Age peopling of northeast Arctic Siberia J. Chlachula et al. 10.1111/bor.12504
- A 1 Ma sedimentary ancient DNA (sedaDNA) record of catchment vegetation changes and the developmental history of tropical Lake Towuti (Sulawesi, Indonesia) M. Ekram et al. 10.1111/gbi.12599
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- Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling L. Epp et al. 10.1038/s41598-018-35550-w
- Steppe-tundra composition and deglacial floristic turnover in interior Alaska revealed by sedimentary ancient DNA (sedaDNA) C. Clarke et al. 10.1016/j.quascirev.2024.108672
- Sedimentary ancient DNA sequences reveal marine ecosystem shifts and indicator taxa for glacial-interglacial sea ice conditions D. Grant et al. 10.1016/j.quascirev.2024.108619
- Vegetation Changes in Southeastern Siberia During the Late Pleistocene and the Holocene J. Courtin et al. 10.3389/fevo.2021.625096
- Cycling and behavior of 230Th in the Arctic Ocean: Insights from sedimentary archives T. Song et al. 10.1016/j.earscirev.2023.104514
- Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia D. Rijal et al. 10.1126/sciadv.abf9557
- Yedoma Ice Complex of the Buor Khaya Peninsula (southern Laptev Sea) L. Schirrmeister et al. 10.5194/bg-14-1261-2017
- Influence of Permafrost Type and Site History on Losses of Permafrost Carbon After Thaw K. Manies et al. 10.1029/2021JG006396
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- Late Glacial and Holocene vegetation and lake changes in SW Yakutia, Siberia, inferred from sedaDNA, pollen, and XRF data I. Baisheva et al. 10.3389/feart.2024.1354284
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- Recovering short DNA fragments from minerals and marine sediments: A comparative study evaluating lysis and isolation approaches D. Gande et al. 10.1002/edn3.547
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- Vegetation and glacier dynamics are sensitive to summer (not winter) warming and the evidence for larch refugia in the ‘Northern Pole of Cold’ inferred from sedimentary ancient DNA and geochemistry W. Jia et al. 10.1016/j.quascirev.2024.108650
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- Persistence of arctic-alpine flora during 24,000 years of environmental change in the Polar Urals C. Clarke et al. 10.1038/s41598-019-55989-9
- Glycerol dialkyl glycerol tetraethers (GDGTs) in high latitude Siberian permafrost: Diversity, environmental controls, and implications for proxy applications S. Kusch et al. 10.1016/j.orggeochem.2019.06.009
- A complete Holocene lake sediment ancient DNA record reveals long-standing high Arctic plant diversity hotspot in northern Svalbard L. Voldstad et al. 10.1016/j.quascirev.2020.106207
- Metabarcoding of modern soil DNA gives a highly local vegetation signal in Svalbard tundra M. Edwards et al. 10.1177/0959683618798095
- A 24,000-year ancient DNA and pollen record from the Polar Urals reveals temporal dynamics of arctic and boreal plant communities C. Clarke et al. 10.1016/j.quascirev.2020.106564
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- Holocene Vegetation and Plant Diversity Changes in the North-Eastern Siberian Treeline Region From Pollen and Sedimentary Ancient DNA S. Liu et al. 10.3389/fevo.2020.560243
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- Sedimentary ancient DNA of rotifers reveals responses to 200 years of climate change in two Kenyan crater lakes M. Kyalo‐Omamo et al. 10.1111/fwb.14093
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- Algorithms and strategies in short‐read shotgun metagenomic reconstruction of plant communities R. Harbert 10.1002/aps3.1034
- Last Glacial Maximum environmental conditions at Andøya, northern Norway; evidence for a northern ice-edge ecological “hotspot” I. Alsos et al. 10.1016/j.quascirev.2020.106364
- Greenhouse gas production in degrading ice-rich permafrost deposits in northeastern Siberia J. Walz et al. 10.5194/bg-15-5423-2018
- Chloroplast and mitochondrial genetic variation of larches at the Siberian tundra-taiga ecotone revealed by de novo assembly H. Zimmermann et al. 10.1371/journal.pone.0216966
- Plant Sedimentary Ancient DNA From Far East Russia Covering the Last 28,000 Years Reveals Different Assembly Rules in Cold and Warm Climates S. Huang et al. 10.3389/fevo.2021.763747
- MetaDamage tool: Examining post-mortem damage in sedaDNA on a metagenomic scale R. Everett & B. Cribdon 10.3389/fevo.2022.888421
- Sedimentary DNA for tracking the long-term changes in biodiversity H. Li et al. 10.1007/s11356-023-25130-5
- Marine ecosystem shifts with deglacial sea-ice loss inferred from ancient DNA shotgun sequencing H. Zimmermann et al. 10.1038/s41467-023-36845-x
- The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data H. Zimmermann et al. 10.3390/genes8100273
- Sedimentary ancient DNA reveals a threat of warming-induced alpine habitat loss to Tibetan Plateau plant diversity S. Liu et al. 10.1038/s41467-021-22986-4
43 citations as recorded by crossref.
- Changes in the composition of marine and sea-ice diatoms derived from sedimentary ancient DNA of the eastern Fram Strait over the past 30 000 years H. Zimmermann et al. 10.5194/os-16-1017-2020
- Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation I. Alsos et al. 10.1371/journal.pone.0195403
- Plant sedimentary DNA as a proxy for vegetation reconstruction in eastern and northern Asia K. Li et al. 10.1016/j.ecolind.2021.108303
- The MIS 3–2 environments of the middle Kolyma Basin: implications for the Ice Age peopling of northeast Arctic Siberia J. Chlachula et al. 10.1111/bor.12504
- A 1 Ma sedimentary ancient DNA (sedaDNA) record of catchment vegetation changes and the developmental history of tropical Lake Towuti (Sulawesi, Indonesia) M. Ekram et al. 10.1111/gbi.12599
- Vegetation state changes in the course of shrub encroachment in an African savanna since about 1850 CE and their potential drivers X. Tabares et al. 10.1002/ece3.5955
- A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy) C. Varotto et al. 10.1038/s41598-020-79738-5
- Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling L. Epp et al. 10.1038/s41598-018-35550-w
- Steppe-tundra composition and deglacial floristic turnover in interior Alaska revealed by sedimentary ancient DNA (sedaDNA) C. Clarke et al. 10.1016/j.quascirev.2024.108672
- Sedimentary ancient DNA sequences reveal marine ecosystem shifts and indicator taxa for glacial-interglacial sea ice conditions D. Grant et al. 10.1016/j.quascirev.2024.108619
- Vegetation Changes in Southeastern Siberia During the Late Pleistocene and the Holocene J. Courtin et al. 10.3389/fevo.2021.625096
- Cycling and behavior of 230Th in the Arctic Ocean: Insights from sedimentary archives T. Song et al. 10.1016/j.earscirev.2023.104514
- Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia D. Rijal et al. 10.1126/sciadv.abf9557
- Yedoma Ice Complex of the Buor Khaya Peninsula (southern Laptev Sea) L. Schirrmeister et al. 10.5194/bg-14-1261-2017
- Influence of Permafrost Type and Site History on Losses of Permafrost Carbon After Thaw K. Manies et al. 10.1029/2021JG006396
- Sedimentary Ancient DNA From the Subarctic North Pacific: How Sea Ice, Salinity, and Insolation Dynamics Have Shaped Diatom Composition and Richness Over the Past 20,000 Years H. Zimmermann et al. 10.1029/2020PA004091
- Late Glacial and Holocene vegetation and lake changes in SW Yakutia, Siberia, inferred from sedaDNA, pollen, and XRF data I. Baisheva et al. 10.3389/feart.2024.1354284
- Gaps in DNA-Based Biomonitoring Across the Globe K. McGee et al. 10.3389/fevo.2019.00337
- Recovering short DNA fragments from minerals and marine sediments: A comparative study evaluating lysis and isolation approaches D. Gande et al. 10.1002/edn3.547
- Holocene floristic diversity and richness in northeast Norway revealed by sedimentary ancient DNA (sedaDNA) and pollen C. Clarke et al. 10.1111/bor.12357
- Vegetation and glacier dynamics are sensitive to summer (not winter) warming and the evidence for larch refugia in the ‘Northern Pole of Cold’ inferred from sedimentary ancient DNA and geochemistry W. Jia et al. 10.1016/j.quascirev.2024.108650
- Spatial distribution of sedimentary DNA is taxon-specific and linked to local occurrence at intra-lake scale Y. Wang et al. 10.1038/s43247-023-00829-y
- A Multi-Gene Region Targeted Capture Approach to Detect Plant DNA in Environmental Samples: A Case Study From Coastal Environments N. Foster et al. 10.3389/fevo.2021.735744
- Ecotypic differentiation, hybridization and clonality facilitate the persistence of a cold-adapted sedge in European bogs C. Schwarzer & J. Joshi 10.1093/biolinnean/blz141
- Persistence of arctic-alpine flora during 24,000 years of environmental change in the Polar Urals C. Clarke et al. 10.1038/s41598-019-55989-9
- Glycerol dialkyl glycerol tetraethers (GDGTs) in high latitude Siberian permafrost: Diversity, environmental controls, and implications for proxy applications S. Kusch et al. 10.1016/j.orggeochem.2019.06.009
- A complete Holocene lake sediment ancient DNA record reveals long-standing high Arctic plant diversity hotspot in northern Svalbard L. Voldstad et al. 10.1016/j.quascirev.2020.106207
- Metabarcoding of modern soil DNA gives a highly local vegetation signal in Svalbard tundra M. Edwards et al. 10.1177/0959683618798095
- A 24,000-year ancient DNA and pollen record from the Polar Urals reveals temporal dynamics of arctic and boreal plant communities C. Clarke et al. 10.1016/j.quascirev.2020.106564
- Anthropogenic activities altering the ecosystem in Lake Yamzhog Yumco, southern Qinghai-Tibetan Plateau W. Han et al. 10.1016/j.scitotenv.2023.166715
- Holocene Vegetation and Plant Diversity Changes in the North-Eastern Siberian Treeline Region From Pollen and Sedimentary Ancient DNA S. Liu et al. 10.3389/fevo.2020.560243
- Plant diversity in sedimentary DNA obtained from high-latitude (Siberia) and high-elevation lakes (China) K. Stoof-Leichsenring et al. 10.3897/BDJ.8.e57089
- Sedimentary ancient DNA of rotifers reveals responses to 200 years of climate change in two Kenyan crater lakes M. Kyalo‐Omamo et al. 10.1111/fwb.14093
- Holocene chloroplast genetic variation of shrubs (Alnus alnobetula, Betula nana, Salix sp.) at the siberian tundra‐taiga ecotone inferred from modern chloroplast genome assembly and sedimentary ancient DNA analyses S. Meucci et al. 10.1002/ece3.7183
- Algorithms and strategies in short‐read shotgun metagenomic reconstruction of plant communities R. Harbert 10.1002/aps3.1034
- Last Glacial Maximum environmental conditions at Andøya, northern Norway; evidence for a northern ice-edge ecological “hotspot” I. Alsos et al. 10.1016/j.quascirev.2020.106364
- Greenhouse gas production in degrading ice-rich permafrost deposits in northeastern Siberia J. Walz et al. 10.5194/bg-15-5423-2018
- Chloroplast and mitochondrial genetic variation of larches at the Siberian tundra-taiga ecotone revealed by de novo assembly H. Zimmermann et al. 10.1371/journal.pone.0216966
- Plant Sedimentary Ancient DNA From Far East Russia Covering the Last 28,000 Years Reveals Different Assembly Rules in Cold and Warm Climates S. Huang et al. 10.3389/fevo.2021.763747
- MetaDamage tool: Examining post-mortem damage in sedaDNA on a metagenomic scale R. Everett & B. Cribdon 10.3389/fevo.2022.888421
- Sedimentary DNA for tracking the long-term changes in biodiversity H. Li et al. 10.1007/s11356-023-25130-5
- Marine ecosystem shifts with deglacial sea-ice loss inferred from ancient DNA shotgun sequencing H. Zimmermann et al. 10.1038/s41467-023-36845-x
- The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data H. Zimmermann et al. 10.3390/genes8100273
Latest update: 02 Nov 2024
Short summary
Organic matter stored in permafrost will start decomposing due to climate warming. To better understand its composition in ice-rich Yedoma, we analyzed ancient sedimentary DNA, pollen and non-pollen palynomorphs throughout an 18.9 m long permafrost core. The combination of both proxies allow an interpretation both of regional floristic changes and of the local environmental conditions at the time of deposition.
Organic matter stored in permafrost will start decomposing due to climate warming. To better...
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