Evidence of high N2 fixation rates in the temperate northeast Atlantic
Diazotrophic activity and primary production (PP) were investigated along two transects (Belgica BG2014/14 and GEOVIDE cruises) off the western Iberian Margin and the Bay of Biscay in May 2014. Substantial N2 fixation activity was observed at 8 of the 10 stations sampled, ranging overall from 81 to 384 µmol N m−2 d−1 (0.7 to 8.2 nmol N L−1 d−1), with two sites close to the Iberian Margin situated between 38.8 and 40.7∘ N yielding rates reaching up to 1355 and 1533 µmol N m−2 d−1. Primary production was relatively lower along the Iberian Margin, with rates ranging from 33 to 59 mmol C m−2 d−1, while it increased towards the northwest away from the peninsula, reaching as high as 135 mmol C m−2 d−1. In agreement with the area-averaged Chl a satellite data contemporaneous with our study period, our results revealed that post-bloom conditions prevailed at most sites, while at the northwesternmost station the bloom was still ongoing. When converted to carbon uptake using Redfield stoichiometry, N2 fixation could support 1 % to 3 % of daily PP in the euphotic layer at most sites, except at the two most active sites where this contribution to daily PP could reach up to 25 %. At the two sites where N2 fixation activity was the highest, the prymnesiophyte–symbiont Candidatus Atelocyanobacterium thalassa (UCYN-A) dominated the nifH sequence pool, while the remaining recovered sequences belonged to non-cyanobacterial phylotypes. At all the other sites, however, the recovered nifH sequences were exclusively assigned phylogenetically to non-cyanobacterial phylotypes. The intense N2 fixation activities recorded at the time of our study were likely promoted by the availability of phytoplankton-derived organic matter produced during the spring bloom, as evidenced by the significant surface particulate organic carbon concentrations. Also, the presence of excess phosphorus signature in surface waters seemed to contribute to sustaining N2 fixation, particularly at the sites with extreme activities. These results provide a mechanistic understanding of the unexpectedly high N2 fixation in productive waters of the temperate North Atlantic and highlight the importance of N2 fixation for future assessment of the global N inventory.
Dinitrogen (N2) fixation is the major pathway of nitrogen (N) input to the global ocean and thereby contributes to sustaining oceanic primary productivity (Falkowski, 1997). The conversion by N2-fixing micro-organisms (diazotrophs) of dissolved N2 gas into bioavailable nitrogen also contributes to new production in the euphotic layer and, as such, to the subsequent sequestration of atmospheric carbon dioxide into the deep ocean (Gruber, 2008). Estimating the overall contribution of N2 fixation to carbon sequestration in the ocean requires an assessment of the global marine N2 fixation.
Until recently, most studies of N2 fixation have focused on the tropical and subtropical regions of the global ocean, with few attempts to measure N2 fixation at higher latitudes, with the exception of enclosed brackish seas (Ohlendieck et al., 2000; Luo et al., 2012; Farnelid et al., 2013). The intense research efforts in the low-latitude regions stem for the observable presence of cyanobacterial diazotrophs such as the diatom–diazotroph association (DDA) and the colony-forming filamentous Trichodesmium (Capone, 1997; Capone et al., 2005; Foster et al., 2007). Trichodesmium, in particular, was long considered as the most active diazotroph in the global ocean. It has mostly been reported in tropical and subtropical oligotrophic oceanic waters which are thought to represent the optimal environment for its growth and N2-fixing activity (Dore et al., 2002; Breitbarth et al., 2007; Montoya et al., 2007; Needoba et al., 2007; Moore et al., 2009; Fernández et al., 2010; Snow et al., 2015). In low-latitude regions, warm-stratified surface waters depleted in dissolved inorganic nitrogen (DIN) are assumed to give a competitive advantage to diazotrophs over other phytoplankton since only they can draw N from the unlimited dissolved N2 pool for their biosynthesis. As such, past estimates of global annual N2 fixation were mainly based on information gathered from tropical and subtropical regions, while higher-latitude areas have been poorly explored for diazotrophic activity (Luo et al., 2012).
Studies using genetic approaches targeting the nifH gene encoding the nitrogenase enzyme, essential for diazotrophy, have shown the presence of diverse diazotrophs throughout the world's oceans, extending their ecological niche (Farnelid et al., 2011; Cabello et al., 2015; Langlois et al., 2015). Small diazotrophs such as unicellular diazotrophic cyanobacteria (UCYN classified in groups A, B and C) and non-cyanobacterial diazotrophs, mostly heterotrophic bacteria (e.g. Alpha- and Gammaproteobacteria), have been observed over a wide range of depths and latitudes, thereby expanding the potential for diazotrophy to a much broader geographic scale (Langlois et al., 2005, 2008; Krupke et al., 2014; Cabello et al., 2015). The discovery of a methodological bias associated with the commonly used 15N2 bubble-addition technique (Mohr et al., 2010) and the presence of an abundant diazotrophic community in high-latitude regions actively fixing N2 (Needoba et al., 2007; Rees et al., 2009; Blais et al., 2012; Mulholland et al., 2012; Shiozaki et al., 2015) indicate that more efforts are needed to better constrain oceanic N2 fixation and diazotrophic diversity at higher latitudes.
In the northeast Atlantic, the large input of iron-rich Saharan-dust-alleviating dissolved iron (dFe) limitation of the nitrogenase activity (Fe being a co-factor of the N2-fixing enzyme) (Raven, 1988; Howard and Rees, 1996; Mills et al., 2004; Snow et al., 2015) and the upwelling of subsurface waters with low DIN (dissolved inorganic nitrogen) to phosphate ratios make this region highly favourable for N2 fixation activity (Deutsch et al., 2007; Moore et al., 2009). In addition, the eastern North Atlantic has been observed to harbour a highly active and particularly diverse diazotrophic community (Langlois et al., 2008; Moore et al., 2009; Großkopf et al., 2012; Ratten et al., 2015; Fonseca-Batista et al., 2017) not only in the tropical and subtropical regions but also in the temperate Iberian region which was reported to be a hotspot for the globally important prymnesiophyte–UCYN-A symbiotic associations (Cabello et al., 2015). Earlier studies in the Iberian open waters investigated diazotrophic activity either under stratified water column conditions of boreal summer and autumn (Moore et al., 2009; Benavides et al., 2011; Snow et al., 2015; Fonseca-Batista et al., 2017) or during the winter convection period (Rijkenberg et al., 2011; Agawin et al., 2014). Here, we present N2 fixation rate measurements and the taxonomic affiliation of the diazotrophic community from two consecutive campaigns, carried out in the northeast sector of the Atlantic Ocean in May 2014, during and after the spring bloom.
2.1 Site description and sample collection
Field experiments were conducted during two nearly simultaneous cruises in May 2014. The Belgica BG2014/14 cruise (21–30 May 2014, R/V Belgica) investigated the Bay of Biscay and the western Iberian Margin. In parallel, the GEOVIDE expedition in the framework of the international GEOTRACES programme (GA01 section, 16 May to 29 June 2014, R/V Pourquoi pas?) sailed from the Portuguese shelf area towards Greenland and ended in Newfoundland, Canada (https://doi.org/10.17600/14000200). N2 fixation activities were determined at 10 stations within the Iberian Basin, among which four sites were investigated during the GEOVIDE cruise (stations Geo-1, Geo-2, Geo-13 and Geo-21) and six sites during the BG2014/14 cruise (stations Bel-3, Bel-5, Bel-7, Bel-9, Bel-11 and Bel-13; Fig. 1).
All sampling sites were located within the Iberian Basin Portugal Current System (PCS) (Ambar and Fiúza, 1994), which is influenced by highly fluctuating wind stresses (Frouin et al., 1990). The predominant upper-layer water mass in this basin is the eastern North Atlantic central water (ENACW), a winter-mode water, which according to Fiúza (1984) consists of two components (see θ-S diagrams in Fig. S1 in the Supplement): (i) the lighter, relatively warm (>14 ∘C) and salty (salinity >35.6) ENACWst formed in the subtropical Azores Front region (∼35∘ N) when Azores mode water is subducted as a result of strong evaporation and winter cooling; and (ii) the colder and less saline ENACWsp, underlying the ENACWst, formed in the subpolar eastern North Atlantic (north of 43∘ N) through winter cooling and deep convection (McCartney and Talley, 1982). The spatial distribution of these central waters allowed the categorization of the sampling sites into two groups: (i) ENACWsp stations north of 43∘ N (Bel-3, Bel-5, Bel-7 and Geo-21), only affected by the ENACWsp (Fig. S1a, b), and (ii) ENACWst stations, south of 43∘ N, characterized by an upper layer influenced by the ENACWst and a subsurface layer, by the ENACWsp (Fig. S1a, b). Most of the ENACWst stations were open-ocean sites (Bel-9, Bel-11, Bel-13 and Geo-13), while two stations were in proximity of the Iberian shelf (Geo-1 and Geo-2) (Tonnard et al., 2018).
Temperature, salinity and photosynthetically active radiation (PAR) profiles down to 1500 m depth were obtained using a conductivity–temperature–depth (CTD) sensor (SBE 09 and SBE 911+, during the BG2014/14 and GEOVIDE cruises, respectively) fitted to the rosette frames. For all biogeochemical measurements, seawater samples were collected with Niskin bottles attached to the rosette and closed at specific depths in the upper 200 m. In particular, for stable isotope incubation experiments, seawater was collected in 4.5 L acid-cleaned polycarbonate (PC) bottles from four depths corresponding to 54 %, 13 %, 3 % and 0.2 % of surface PAR at stations Bel-3, Bel-5, Bel-7, Bel-9, Bel-11 and Geo-2. At stations Geo-1, Geo-13 and Geo-21, two additional depths corresponding to 25 % and 1 % of surface PAR were also sampled for the same purpose.
2.2 Nutrient measurements
Ammonium () concentrations were measured on-board during both cruises, while nitrate plus nitrite () concentrations were measured on-board only during the GEOVIDE expedition. During the BG2014/14 cruise, samples for and phosphate () measurements were filtered (0.2 µm) and stored at −20 ∘C until analysis at the home-based laboratory. data are not available for the GEOVIDE cruise.
Nutrient concentrations were determined using the conventional fluorometric (for ) (Holmes et al., 1999) and colorimetric methods (for the other nutrients) (Grasshoff et al., 1983) with detection limits (DLs) of 64 nmol L−1 (), 90 nmol L−1 () and 60 nmol L−1 (). For the BG2014/14 cruise, chlorophyll a (Chl a) concentrations were determined according to Yentsch and Menzel (1963). Briefly, 250 mL of seawater were filtered onto Whatman GF/F glass microfiber filters (0.7 µm nominal pore size), followed by pigment extraction in 90 % acetone, centrifugation and fluorescence measurement using a Shimadzu RF-150 fluorometer. For the GEOVIDE cruise, Chl a concentrations were measured as described in Ras et al. (2008). Briefly, filters samples were extracted in 100 % methanol, disrupted by sonification and clarified by vacuum filtration through Whatman GF/F filters. The extracts were analysed by high-performance liquid chromatography (HPLC Agilent Technologies 1200).
2.3 15N2 fixation and 13C- uptake rates
N2 fixation and primary production (PP) were determined simultaneously from the same incubation sample at each depth in duplicate, using the 15N-N2 dissolution method (Großkopf et al., 2012) and 13C-NaHCO3 tracer addition technique (Hama et al., 1983), respectively. Details concerning the applied 15N2 dissolution method can be found in Fonseca-Batista et al. (2017). Briefly, 15N2-enriched seawater was prepared by degassing prefiltered (0.2 µm) low-nutrient seawater, under acid-clean conditions using a peristaltic pump slowly circulating (100 mL min−1) the seawater through two degassing membrane contactor systems (MiniModule, Liqui-Cel) in series, held under high vacuum (50 mbar). The degassed water was directly transferred into 2 L gastight Tedlar bags (Sigma-Aldrich) fitted with a septum through which 30 mL of pure 15N2 gas (98 15N atom %, Eurisotop, lot number 23/051301) were injected before the bags were shaken 24 h for tracer equilibration. This 15N2 gas batch was previously shown to be free of 15N-labelled contaminants such as nitrate, nitrite, ammonium and nitrous oxide (Fonseca-Batista et al., 2017). Each PC incubation bottle was partially filled with sampled seawater, then amended with 250 mL of 15N2-enriched seawater and spiked with 3 mL of 13C-labelled dissolved inorganic carbon (DIC; 200 mmol L−1 solution of NaH13CO3, 99 %, Eurisotop). The 13C-DIC added to a 4.5 L incubation bottle results in a ∼6.5 % increment of the initial DIC content, considered equal to the average oceanic DIC concentration (∼2000 µmol kg−1; Zeebe and Wolf-Gladrow, 2003). This allows sufficient tracer enrichment for a sensitive detection in the particulate organic carbon (POC) pool as a result of incorporation (Hama et al., 1983). Finally, each incubation bottle was topped off with the original seawater sample. Samples were then incubated for 24 h in on-deck incubators circulated with surface seawater and wrapped with neutral density screens (Rosco) simulating the in situ irradiance conditions. After incubation, water was transferred under helium pressure from each PC bottle into triplicate 12 mL gastight Exetainer vials (Labco) poisoned (100 µL of saturated HgCl2 solution) and pre-flushed with helium for the determination of the 15N and 13C atom % enrichments of the dissolved N2 (in duplicate) and DIC pools. The remaining incubated sample was filtered onto pre-combusted MGFs (glass microfiber filters, 0.7 µm nominal pore size, Sartorius), which were subsequently dried at 60 ∘C and stored at room temperature. The natural concentration and isotopic composition of POC and particulate nitrogen (PN) were assessed by filtering immediately after sampling an additional 4.5 L of non-spiked seawater from each depth. All samples were measured for POC and PN concentrations and isotopic compositions using an elemental analyser (EuroVector Euro EA 3000) coupled to an isotope ratio mass spectrometer (IRMS; Delta V Plus, Thermo Scientific) and calibrated against international certified reference materials (CRMs): IAEA-N1 and IAEA-305B for N and IAEA-CH6 and IAEA-309B for C. The isotopic composition of the DIC and dissolved N2 pools was determined using a gas bench system coupled to an IRMS (Nu Instruments Perspective). Exetainer vials were first injected with He to create a 4 mL headspace and then equilibrated on a rotatory shaker: for 12 h after phosphoric acid addition (100 µL, 99 %, Sigma-Aldrich) for DIC analyses and only for an hour without acid addition for N2 analyses. DIC measurements were corrected according to Miyajima et al. (1995) and 15N2 enrichments were calibrated with atmospheric N2. N2 fixation and carbon uptake volumetric rates were computed as shown in Eq. (1):
where APN or POC represents the 15N or 13C atom % excess of PN or POC, respectively, at the beginning (t=0) and end (final) of the incubation, while represents the 15N or 13C atom % excess of the dissolved inorganic pool (N2 or DIC); and Δt represents the incubation period.
Depth-integrated rates were calculated by non-uniform gridding trapezoidal integration for each station. The DLs, defined as the minimal detectable uptake rates, were determined as detailed in Fonseca-Batista et al. (2017). To do so, the minimal acceptable 15N or 13C enrichment of PN or POC after incubation (Montoya et al., 1996) is considered to be equal to the natural isotopic composition, specific to each sampled depth, plus 3 times the uncertainty obtained for N and C isotopic analysis of CRMs. All remaining experiment-specific terms are then used to recalculate the minimum detectable uptake. Carbon uptake rates were always above their specific DL, while N2 fixation was not detectable at any of the four depths of stations Bel-3 and Bel-5, nor at Bel-9 at 120 m, Bel-11 at 45 m and Geo-21 at 18 m (see Table S1).
2.4 DNA sampling and nifH diversity analysis
During the BG2014/14 and GEOVIDE cruises, water samples were also collected for DNA extraction and nifH sequencing at the stations where N2 fixation rate measurements were carried out. Overall, 2 L of seawater samples were vacuum filtered (20 to 30 kPa) through sterile 0.2 µm 47 mm membrane filters (cellulose acetate Sartorius-type 111 for BG2014/14; Millipore's Isopore – GTTP04700 for GEOVIDE) subsequently placed in Cryovials directly flash deep frozen in liquid nitrogen. At the land-based laboratory, samples were transferred to a −80 ∘C freezer until nucleic acid extraction.
For the BG2014/14 samples, DNA was extracted from the samples using the Power Water DNA Isolation kit (MOBIO) and checked for integrity by agarose gel electrophoresis. The amplification of nifH sequences was performed on 3–50 ng µL−1 environmental DNA samples using one unit of Taq polymerase (5PRIME), by nested PCR according to Zani et al. (2000) and Langlois et al. (2005). Amplicons of the predicted 359 bp size observed by gel electrophoresis were cloned using the pGEM-T Easy cloning kit (PROMEGA) according to the manufacturer's instructions. A total of 103 clones were sequenced by the Sanger technique (GATC, Marseille).
For the GEOVIDE samples, DNA was extracted using the QIAGEN DNeasy Plant Mini Kit as instructed by the manufacture, with a modified step to improve cell lysis. This step consisted of an incubation at 52 ∘C on an orbital shaker for 1 h (300 rpm) with 50 µL of lysozyme solution (5 mg mL−1 in TE buffer), 45 µL of Proteinase K solution (20 mg mL−1 in Milli-Q PCR-grade water) and 400 µL of AP1 lysis buffer from the QIAGEN DNeasy Plant Mini Kit. DNA concentration and purity were assessed with NanoDrop 2000 and then stored at −80 ∘C. The DNA samples were screened for the presence of the nifH gene as described in Langlois et al. (2005). Samples that tested positive were further prepared for next-generation sequencing on an Illumina MiSeq platform using primers that included the nifH1 and nifH2 primers (Zani et al., 2000; Langlois et al., 2005; Ratten, 2017) attached to Illumina adaptors and barcodes for multiplexing in the Illumina MiSeq instrument. Next-generation sequencing was carried out at the Integrated Microbiome Resource (IMR) of the Centre for Comparative Genomics and Evolutionary Bioinformatics (CGEB) at Dalhousie University (Halifax, Canada). Raw Illumina paired-end reads of nifH were preprocessed using the QIIME pipeline (Quantitative Insights Into Microbial Ecology; Caporaso et al., 2010) following the IMR workflow (https://github.com/mlangill/microbiome_helper/wiki/16S-standard-operating-procedure, last access: 1 September 2018; Comeau et al., 2017). The 28 OTUs for the nifH genes presented in this study were assembled based on 96 % identity of sequence reads.
DNA alignments were performed using the Molecular Evolutionary Genetics Analysis software (MEGA 7.0) (Kumar et al., 2016) and nifH operational taxonomic units (nifH-OTUs) were defined with a maximum 5 % divergence cut-off. DNA sequences were translated into amino acid sequences; then, nifH evolutionary distances considered as the number of amino acid substitutions per site were computed using the Poisson correction method (Nei, 1987). All positions containing gaps and missing data were eliminated (see phylogenetic tree in Fig. 6). One representative sequence of each nifH-OTU was deposited in GenBank under the accession numbers referenced from KY579322 to KY579337, for the Belgica DNA samples and referenced from MH974781 to MH974795 for the GEOVIDE Iberian samples.
2.5 Statistical analysis
The relationship between N2 fixation activities and ambient physical and chemical properties was examined using SigmaPlot (Systat Software, San Jose, CA) by computing Spearman rank correlation coefficients linking depth-integrated rates and volumetric rates of N2 fixation and primary production to environmental variables. These ambient variables were either averaged or integrated over the euphotic layer, or considered as discrete measurements. These variables include temperature, salinity, Chl a, , , phosphorus excess (P) derived from in situ nutrient measurements and climatological data (Garcia et al., 2013), dissolved iron concentrations determined for the GEOVIDE cruise (Tonnard et al., 2018) and satellite-derived dust deposition fluxes at the time of our study (Giovanni online data system). When nutrient concentrations were below the DL, we used the DL value to run the correlation test. In addition, we ran a principal component analysis (PCA) using XLSTAT 2017 (Addinsoft, Paris, France, 2017) to get an overview of the interconnection between all the latter key variables with N2 fixation at the time of our study. The output of the PCA is discussed in Sect. 4.3.
3.1 Ambient environmental settings
Surface waters of all the ENACWst stations showed a relatively strong stratification resulting from the progressive spring heating, with sea surface temperature (SST) ranging from 15.3 (Geo-13) to 17.2 ∘C (Bel-13). At the surface, nutrients were depleted ( <0.09 µM in the upper 20 m; Fig. 2c, f) and Chl a concentrations were low (<0.25 µg L−1; Fig. 2a, d) but showed a subsurface maximum (between 0.5 and 0.75 µg L−1 at approximately 50 m), a common feature for oligotrophic open-ocean waters. Amongst the ENACWst stations, station Geo-13 had a slightly higher nutrient content ( µM) in the lower mixed layer depth (MLD) and a higher Chl a concentration (>0.5 µg L−1 in the upper 35 m).
Surface waters at ENACWsp stations were less stratified (SST between 14.0 and 14.5 ∘C), were nutrient replete (surface ranging from 0.3 to 0.8 µM) and had a higher phytoplankton biomass (Chl a between 0.7 to 1.2 µg L−1 in the upper 30 m except for station Bel-5). Highest Chl a values were observed at station Bel-7 (44.6∘ N, 9.3∘ W), which appeared to be located within an anticyclonic mesoscale eddy as evidenced by the downwelling structure detected in the Chl a and profiles (Fig. 2a, c) at this location (as well as T and S sections; data not shown).
3.2 Primary production and satellite-based Chl a observations
PP, estimated through the incorporation of enriched bicarbonate (13C-NaHCO3) into the POC pool, illustrated volumetric rates ranging from 7 to 3500 µmol C m−3 d−1 (see Table S1) and euphotic-layer-integrated rates ranging from 32 to 137 mmol C m−2 d−1 (Fig. 3a, b and Table S2). PP was relatively homogenous in the Bay of Biscay (stations Bel-3, Bel-5 and Bel-7) and along the Iberian Margin (Bel-9, Bel-11, Bel-13 and Geo-1) with average rates ranging from 33 to 43 mmol C m−2 d−1, except for station Bel-7, where it was slightly higher (52 mmol C m−2 d−1; Fig. 3a, b and Table S2), likely due to the presence of an anticyclonic mesoscale structure at this location. PP increased westwards away from the Iberian Peninsula, reaching highest values at stations Geo-13 and Geo-21 (79 and 135 mmol C m−2 d−1, respectively; Fig. 3b), but also slightly higher on the Portuguese shelf (reaching 59 mmol C m−2 d−1 at Geo-2). These results are in the range of past measurements in this region for the same period of the year, ranging from 19 to 103 mmol C m−2 d−1 (Marañón et al., 2000; Fernández et al., 2005; Poulton et al., 2006; Fonseca-Batista et al., 2017). Area-averaged Chl a derived from satellite imagery for a time period overlapping with ours (Giovanni online data system; Fig. 4a, b) revealed that post-bloom conditions prevailed at most sites (Bel-3 to Bel-13 and Geo-1 to Geo-13), while bloom conditions were still ongoing at station Geo-21 at the time of our study.
3.3 N2 fixation and dominant diazotrophs at the sampling sites
Volumetric N2 fixation rates were above the DL at 8 of the 10 stations sampled in this study (Bel-3 and Bel-5 being below the DL) and ranged from 0.7 to 65.4 nmol N L−1 d−1 (see Table S1), with areal rates ranging between 81 and 1533 µmol N m−2 d−1 (Fig. 3c, d and Table S2).
We observed intense N2 fixation activities at the two sites (Bel-11 and Bel-13) most affected by ENACWst (Fig. S1). At stations Bel-11 and Bel-13, volumetric rates of N2 fixation ranged from 2.4 to 65.4 nmol N L−1 d−1, with highest rates found at surface level (65.4 and 45.0 nmol N L−1 d−1, respectively), while areal rates averaged 1533 and 1355 µmol N m−2 d−1, respectively. N2 fixation was detected at all four GEOVIDE stations. Shelf-influenced (Geo-1 and Geo-2) and open-ocean (Geo-13) ENACWst sites, geographically close to Bel-11 and Bel-13, also displayed high N2 fixation activities, with volumetric rates ranging from 1.0 to 7.1 nmol N L−1 d−1 (Table S1), while depth-integrated rates averaged 141, 262 and 384 µmol N m−2 d−1, respectively (Fig. 3c, d and Table S2). Significant N2 fixation rates were also measured at stations that exhibited the highest primary production rates, including Bel-7, Geo-13 and Geo-21 (Fig. 3). We computed the relative contribution of N2 fixation to PP by converting N2 fixation rates to carbon uptake using either the Redfield ratio of 6.6 or the determined median POC ∕ PN ratio for natural particles (equivalent to the mean value of 6.3±1.1, ±SD, n=46; Table 1). N2 fixation contributed to less than 2 % of PP at the ENACWsp sites Bel-7 and Geo-21 and between 3 % and 28 % of PP at the ENACWst sites, except for station Bel-9 where it supported about 1 % of PP.
Screening of the nifH genes from DNA samples collected during the BG2014/14 cruise returned positive nifH presence at stations Bel-11 and Bel-13, which displayed the largest areal N2 fixation rates. Cloning of the nifH amplicons found in surface waters (54 % PAR level where volumetric rates of N2 fixation were the highest) yielded 103 nifH sequences. No successful nifH amplifications were obtained at the other Belgica stations or depths where diazotrophic activities were lower or undetectable. All the clones (n=41) recovered from station Bel-11 were taxonomically assigned to a single OTU that had 99 % identity at the nucleotide level and 100 % similarity at the amino acid level with the symbiotic diazotrophic cyanobacteria UCYN-A1 or Candidatus Atelocyanobacterium thalassa, first characterized from station ALOHA in the North Pacific (Figs. 5a and 6) (Thompson et al., 2012). While the UCYN-A OTU also dominated the clones recovered from station Bel-13, 14 additional nifH phylotypes affiliated with non-cyanobacterial diazotrophs were also recovered at that station (Figs. 5a and 6). Among these 15 OTUs, represented by a total of 62 sequenced clones, 45.2 % of the sequences were affiliated with UCYN-A1 (identical to those found at Bel-11) and the rest with heterotrophic bacteria, with 25.8 % affiliated with Bacteroidetes, 19.3 % with Firmicutes and 9.7 % with Proteobacteria (Gamma-, Epsilon- and Deltaproteobacteria; Figs. 5a and 6). For the GEOVIDE cruise, nifH screening returned positive nifH presence at stations Geo-2, Geo-13 and Geo-21. Next-generation sequencing of these amplicons yielded in total 21 001 reads, with a range of 170 to 9239 nifH amplicons per sample, belonging exclusively to non-cyanobacterial diazotrophs, with the major affiliation to Verrucomicrobia, and Gamma-, Delta- and Alphaproteobacteria, representing 54 %, 28 %, 15 % and 1 % of total nifH amplicons, respectively (Figs. 5b and 6). Members of a clade that has recently been characterized from the TARA expedition through metagenome assembled genomes of marine heterotrophic diazotrophs (Delmont et al., 2018) were found among the Gammaproteobacteria OTU types that dominated the community at station Geo-21.
3.4 Relationship between N2 fixation rates and environmental variables
N2 fixation activities were measured in surface waters characterized by relatively low SST (12.5–17.3 ∘C) and a wide range of dissolved inorganic nitrogen (DIN) concentrations ( from <0.1 to 7.6 µM). Water-column-integrated N2 fixation tended to increase with average surface water salinity (n=10, p<0.05, Table S3) but was inversely correlated with satellite-based dust deposition in May 2014, the month during which our sampling took place (n=10, p<0.01). Volumetric rates of N2 fixation tended to increase with temperature (n=46, p<0.01, Table S4) and excess phosphorus concentration (only available for Belgica-studied sites, n=24, p<0.01) while being negatively correlated with nitrate plus nitrite concentration (n=46, p<0.01).
During two quasi-simultaneous expeditions to the Iberian Basin and the Bay of Biscay in May 2014 (38.8–46.5∘ N), we observed N2 fixation activity in surface waters of most visited stations (except for the two northernmost sites in the Bay of Biscay). Our results are in support of other recent studies that have observed diazotrophic communities and significant N2 fixation rates in marine environments departing from the previously established belief that diazotrophs are preferentially associated with warm oceanic water and low fixed-nitrogen concentrations (Needoba et al., 2007; Rees et al., 2009; Blais et al., 2012; Mulholland et al., 2012; Shiozaki et al., 2015). Although there is growing evidence that diazotrophs and their activity can extend geographically to temperate coastal and shelf-influenced regions, there still exist very few rate measurements at higher latitudes, especially in open waters. In the following sections, we shall (1) discuss the significance of N2 fixation in the Iberian Basin as well as its relation to primary productivity pattern and extend our view to the whole Atlantic Ocean, (2) provide information on the taxonomic affiliation of diazotrophs present at the time of our study and (3) explore potential environmental conditions that may have supported this unexpectedly high diazotrophic activity in the Iberian Basin.
4.1 Significance of N2 fixation in the temperate ocean
In the present study, we found surprisingly high N2 fixation activities at most of the studied sites. Rates were exceptionally elevated at two open-ocean stations located between 38.8 and 40.7∘ N at about 11∘ W (averaging 1533 and 1355 µmol N m−2 d−1 at stations Bel-11 and Bel-13, respectively; Fig. 3c, d, and Tables S1 and S2). Although N2 fixation was not detected in the central Bay of Biscay (stations Bel-3 and Bel-5), rates recorded at all the other sites were relatively high, not only in shelf-influenced areas (141 and 262 µmol N m−2 d−1 at stations Geo-1 and Geo-2, respectively) but also in the open ocean (average activities between 81 and 384 µmol N m−2 d−1 at stations Bel-7, Bel-9, Geo-13 and Geo-21).
By fuelling the bioavailable nitrogen pool, N2 fixation may support marine PP, but the extent of this contribution needs to be established for areas outside tropical and subtropical regions. PP rates measured here are of similar range if not slightly higher than those reported in earlier investigations in the northeast Atlantic from subtropical to temperate waters (32 to 137 mmol C m−2 d−1 relative to 19 to 103 mmol C m−2 d−1) (Marañón et al., 2000; Fernández et al., 2005; Poulton et al., 2006; Fonseca-Batista et al., 2017). However, the contribution of N2 fixation to PP in the present work (1 %–28 % of PP) reached values twice as high as those reported in other studies for the tropical and subtropical northeast Atlantic (contributions to PP ranging from <1 % to 12 %) (Voss et al., 2004; Rijkenberg et al., 2011; Fonseca-Batista et al., 2017). This observation further questions the accepted premise that oligotrophic surface waters of tropical and subtropical regions are the key environment where diazotrophic activity significantly supports marine primary productivity (Capone et al., 2005; Luo et al., 2014). Nevertheless, it is important to keep in mind that our computation relies on the assumption that only photoautotrophic diazotrophs contribute to bulk N2 fixation, which may not always be the case, particularly in the present study, where mostly heterotrophic diazotrophs were observed. However, it is likely that all the recently fixed-nitrogen ultimately becomes available for the whole marine autotrophic community.
Previous studies in the open waters of the Iberian Basin (35–50∘ N, east of 25∘ W) reported relatively lower N2 fixation rates (from <0.1 to 140 µmol N m−2 d−1), regardless of whether the bubble-addition method (Montoya et al., 1996) or the dissolution method (Mohr et al., 2010; Großkopf et al., 2012) was used. However, these studies were carried out largely outside the bloom period, either during the late growing season (summer and autumn) (Moore et al., 2009; Benavides et al., 2011; Snow et al., 2015; Riou et al., 2016; Fonseca-Batista et al., 2017) or during winter (Rijkenberg et al., 2011; Agawin et al., 2014). In contrast, the present study took place in spring, during or just at the end of the vernal phytoplankton bloom. Differences in timing of these various studies and, to a lesser extent, in methodologies (bubble-addition versus dissolution method) may explain the discrepancies in diazotrophic activity observed between our study and earlier works. Yet, the 20-month survey by Moreira-Coello et al. (2017) in nitrogen-rich temperate coastal waters in the southern Bay of Biscay, covering the seasonal spring bloom and upwelling pulses, did not reveal significant N2 fixation activities: from 0.1 to 1.6 µmol N m−2 d−1 (up to 3 orders of magnitude lower than those reported here). However, unlike our study, this work was carried out not only using the bubble-addition method but also in an inner coastal system, as opposed to the mainly open waters investigated here, making it difficult to predict which variable or combination of variables caused the difference observed between the two studies.
Our maximal values recorded at stations Bel-11 and Bel-13 are 1 order of magnitude higher than maximal N2 fixation rates reported further south for the eastern tropical and subtropical North Atlantic (reaching up to 360–424 µmol N m−2 d−1) (Großkopf et al., 2012; Subramaniam et al., 2013; Fonseca-Batista et al., 2017). Besides these two highly active sites, N2 fixation rates at the other studied locations (ranging between 81 and 384 µmol N m−2 d−1) were still in the upper range of values reported for the whole eastern Atlantic region. Yet, conditions favouring N2 fixation are commonly believed to be met in tropical and subtropical regions where highest activities have mostly been measured, particularly in the eastern North Atlantic (e.g. higher seawater temperature, DIN limiting concentrations, excess phosphorus supply through eastern boundary upwelling systems) (Capone et al., 2005; Deutsch et al., 2007; Luo et al., 2014; Fonseca-Batista et al., 2017).
In the Atlantic Ocean, very high N2 fixation rates up to ∼1000 µmol N m−2 d−1, as observed here, have only been reported for temperate coastal waters of the northwest Atlantic (up to 838 µmol N m−2 d−1) (Mulholland et al., 2012) and for tropical shelf-influenced and mesohaline waters of the Caribbean and Amazon River plume (maximal rates ranging between 898 and 1600 µmol N m−2 d−1) (Capone et al., 2005; Montoya et al., 2007; Subramaniam et al., 2008). Shelf and mesohaline areas have indeed been shown to harbour considerable N2 fixation activity, not only in tropical regions (Montoya et al., 2007; Subramaniam et al., 2008) but also in waters extending from temperate to polar areas (Rees et al., 2009; Blais et al., 2012; Mulholland et al., 2012; Shiozaki et al., 2015). Yet, the environmental conditions leading to the high N2 fixation rates in these regions are currently not well understood. For tropical mesohaline systems, the conditions proposed to drive such an intense diazotrophic activity include the occurrence of highly competitive diatom–diazotroph associations and the influence of excess phosphorus input (i.e. excess relative to the canonical Redfield P ∕ N ratio; expressed as P*) from the Amazon River (Subramaniam et al., 2008). However, such conditions of excess P were not observed in previous studies carried out in high-latitude shelf regions with elevated N2 fixation activities (Blais et al., 2012; Mulholland et al., 2012; Shiozaki et al., 2015), nor were they distinctly apparent in the present study (see Sect. 4.3). In addition, while tropical mesohaline regions are characterized by the predominance of diatom–diazotroph associations (and filamentous Trichodesmium spp.), in temperate shelf areas the diazotrophic community is reported to be essentially dominated by UCYN-A and heterotrophic bacteria (Rees et al., 2009; Blais et al., 2012; Mulholland et al., 2012; Agawin et al., 2014; Shiozaki et al., 2015; Moreira-Coello et al., 2017).
4.2 Features of the diazotrophic community composition in the temperate North Atlantic
Our qualitative assessment of nifH diversity revealed a predominance of UCYN-A symbionts, only at the two stations with the highest surface N2 fixation rates (up to 65.4 and 45.0 nmol N L−1 d−1 at Bel-11 and Bel-13, respectively; Table S1), while the remaining nifH sequences recovered belonged to heterotrophic diazotrophs, at Bel-13 as well as at all the other sites where nifH genes could be detected. No Trichodesmium nifH sequences were recovered from either BG2014/14 or GEOVIDE DNA samples, and the absence of the filamentous cyanobacteria was also confirmed by the CHEMTAX analysis of phytoplankton pigments (Manon Tonnard, personal communication, 2018). Previous work in temperate regions of the global ocean, including the Iberian Margin, also reported that highest N2 fixation activities were predominantly related to the presence of UCYN-A symbionts, followed by heterotrophic bacteria, while Trichodesmium filaments were low or undetectable (Needoba et al., 2007; Rees et al., 2009; Mulholland et al., 2012; Agawin et al., 2014; Shiozaki et al., 2015; Moreira-Coello et al., 2017).
UCYN-A (in particular from the UCYN-A1 clade) symbionts were shown to live in symbioses with single-celled prymnesiophyte algae (Thompson et al., 2012). This symbiotic association, considered obligate, has been reported to be particularly abundant in the central and eastern basin of the North Atlantic (Rees et al., 2009; Krupke et al., 2014; Cabello et al., 2015; Martínez-Pérez et al., 2016).
Besides UCYN-A, all the remaining nifH sequences recovered from both cruises, although obtained through different approaches, belonged to non-cyanobacterial diazotrophs. The phylogenetic tree (Fig. 6) showed that the non-cyanobacterial diazotrophs clustered with (1) Verrucomicrobia, a phylum yet poorly known that includes aerobic to microaerophilic methanotrophs groups, found in a variety of environments (Khadem et al., 2010; Wertz et al., 2012), (2) anaerobic bacteria, obligate or facultative, mostly affiliated with Cluster III phylotypes of functional nitrogenase (e.g. Bacteroidetes, Firmicutes, Proteobacteria) and lastly (3) phylotypes from Clusters I, II and IV (e.g. Proteobacteria and Firmicutes). Among the Cluster III phylotypes, Bacteroidetes are commonly encountered in the marine environment and are known as specialized degraders of organic matter that preferably grow attached to particles or algal cells (Fernández-Gómez et al., 2013). N2 fixation activity has previously been reported in five Bacteroidetes strains including Bacteroides graminisolvens, Paludibacter propionicigenes and Dysgonomonas gadei (Inoue et al., 2015), which are the closest cultured relatives of the nifH-OTUs detected at station Bel-13 (Fig. 6). Anaerobic Cluster III phylotypes have been previously recovered from different ocean basins (Church et al., 2005; Langlois et al., 2005, 2008; Man-Aharonovich et al., 2007; Rees et al., 2009; Halm et al., 2012; Mulholland et al., 2012). These diazotrophs were suggested to benefit from anoxic microzones found within marine snow particles or zooplankton guts to fix N2 thereby avoiding oxygenic inhibition of their nitrogenase enzyme (Braun et al., 1999; Church et al., 2005; Scavotto et al., 2015). Therefore, the bloom to early post-bloom conditions, prevailing during our study, were likely beneficial for the development of diazotrophic groups that depend on the availability of detrital organic matter or on the association with grazing zooplankton. In contrast, at the northernmost Geo-21 station, we observed a dominance of Gammaproteobacteria phylotypes belonging to a recently identified clade of marine diazotrophs within the Oceanospirillales (Delmont et al., 2018).
These observations tend to strengthen the idea that not only UCYN-A (Cabello et al., 2015; Martínez-Pérez et al., 2016) but also non-cyanobacterial diazotrophs (Halm et al., 2012; Shiozaki et al., 2014; Langlois et al., 2015) play a substantial role in oceanic N2 fixation. Although it is possible to assign a broad taxonomic affiliation to classify the nifH genes, very little is known with respect to their physiology, their role in the ecosystem and the factors controlling their distribution, due to the lack of representative whole genome sequences and environmentally relevant strains available for experimentation (Bombar et al., 2016). While the widespread distribution of UCYN-A and non-cyanobacterial diazotrophs has been reported, their contribution to in situ activity remains poorly quantified.
4.3 Key environmental drivers of N2 fixation
Environmental conditions that promote autotrophic and heterotrophic N2 fixation activity in the ocean are currently not well understood (Luo et al., 2014). While heterotrophic diazotrophs would not be directly affected by the commonly recognized environmental controls of autotrophic diazotrophy such as solar radiation, seawater temperature and DIN, as they possess fundamentally different ecologies, the molecular and cellular processes for sustaining N2 fixation activity would nevertheless require a supply of dFe and P (Raven, 1988; Howard and Rees, 1996; Mills et al., 2004; Snow et al., 2015). Besides the need for these critical inorganic nutrients, heterotrophic N2 fixation was also recently shown to be highly dependent on the availability of organic matter (Bonnet et al., 2013; Rahav et al., 2013, 2016; Loescher et al., 2014).
Findings from the GEOVIDE cruise tend to support the hypothesis of a stimulating effect of organic matter availability on N2 fixation activity at the time of our study. Lemaitre et al. (2018) report that surface waters (upper 100–120 m) of the Iberian Basin (stations Geo-1 and Geo-13) and the West European Basin (Geo-21) carried significant POC loads (POC of 166, 171 and 411 mmol C m−2, respectively) with a dominant fraction of small size POC (the 1–53 µm size fraction; 75 %, 92 % and 64 % of the total POC, respectively). Smaller cells, usually being slow-sinking particles, are more easily remineralized in surface waters (Villa-Alfageme et al., 2016). This is confirmed by the very low export efficiency (only 3 % to 4 % of euphotic layer integrated PP) observed at stations Geo-13 and Geo-21, suggesting an efficient shallow remineralization (Lemaitre et al., 2018). This availability of organic matter in the upper layers likely contributed to supplying remineralized P (organic P being generally more labile than other organic nutrients; Vidal et al., 1999, 2003) and to enhancing the residence time of dFe originating from atmospheric deposition due to the formation of organic ligands (Jickells, 1999; de Baar and de Jong, 2001; Sarthou et al., 2003).
P* values from the BG2014/14 cruise (Table S1) and the climatological P* data for the Iberian Basin (Garcia et al., 2013) do not exhibit a clear excess in the region (P* ranging from −0.1 to 0.1 µmol L−1; Fig. 1 and Tables S1 and S2). Nevertheless, Spearman rank correlations indicate that volumetric N2 fixation rates were significantly correlated with the BG2014/14 shipboard P* values (n=24, p<0.01, Table S4), with stations Bel-11 and Bel-13 weighing heavily in this correlation. Without the data from these two sites (data not shown), the correlation between in situ P* and N2 fixation rates is no longer significant (n=16, p=0.163), while P* becomes highly correlated with PP and Chl a (n=16, p=0.0257 and 0.016, respectively). This suggests that the effect of P* on N2 fixation, although not clearly evident from absolute values, was most important at stations Bel-11 and Bel-13 but nonetheless existent at the other sites (Bel-7 and Bel-9). The occurrence of N2 fixation in oligotrophic waters displaying weak P* values, depleted in DIN and but replete in dFe, might in fact reflect the direct use by diazotrophs of dissolved organic phosphorus (DOP). Indeed, according to Landolfi et al. (2015) diazotrophy ensures the supply of additional N and energy for the enzymatic mineralization of DOP (synthesis of extracellular alkaline phosphatase). Therefore, a likely enhanced DOP release towards the end of the spring bloom may have contributed to sustaining N2 fixation in the studied region. Such DOP utilization has indeed been reported for various marine organisms, particularly diazotrophic cyanobacteria (Dyhrman et al., 2006; Dyhrman and Haley, 2006) and bacterial communities (Luo et al., 2009).
Supply routes of dFe to surface waters of the investigated area relied on lateral advection from the continental shelf (stations Geo-1 and Geo-2) (Tonnard et al., 2018), vertical mixing due to post-winter convection (Thuróczy et al., 2010; Rijkenberg et al., 2012; García-Ibáñez et al., 2015) and/or atmospheric dust deposition (dry plus wet). Atmospheric deposition may have been particularly important for the area of stations Bel-11 and Bel-13 receiving warm and saline surface waters from the subtropics.
Atmospheric aerosol deposition determined during the GEOVIDE cruise (Shelley et al., 2017), as well as the satellite-based dust deposition (dry plus wet) averaged over the month of May 2014 (Fig. S3b; Giovanni online satellite data system, NASA Goddard Earth Sciences Data and Information Services Center), reveal rather weak dust loadings over the investigated region, resulting in areal N2 fixation rates being actually inversely correlated with the satellite-based average dust input (p<0.01; Table S3). In contrast, satellite-based dust deposition (dry plus wet) averaged over the month of April 2014 (i.e. preceding the timing of sampling) indicates high fluxes over the subtropical waters located south of the studied region (Fig. S3a;). The θ-S diagrams at stations Bel-11 and Bel-13 (and to a lesser extent at Geo-13; Fig. S1) illustrate the presence of very warm and saline waters, which were advected from the subtropics as suggested by the satellite SST images (Fig. S2). We thus argue that advection of surface waters from south of the study area represented a source of atmospherically derived dFe and contributed to driving the high N2 fixation activity recorded at stations Bel-11 and Bel-13. This resulted in N2 fixation rates there being positively (although weakly) correlated (p=0.45; Table S3) with the April average dust input.
For the central Bay of Biscay, where N2 fixation was below the DL (stations Bel-3 and Bel-5), dust deposition in April 2014 was also the lowest, suggesting that N2 fixation there might have been limited by dFe availability. Indeed, at stations Bel-3 and Bel-5 diazotrophic activity in surface waters was boosted following dFe amendments (>25 nmol N L−1 d−1; Li et al., 2018).
Thus, the enhanced N2 fixation activity at stations Bel-11 and Bel-13, as compared to the other sites, was likely stimulated by the combined effects of the presence of highly competitive prymnesiophyte–UCYN-A symbionts, organic matter as a source of DOP, positive P* signatures and advection of subtropical surface waters enriched in dFe.
These statements are further supported by the outcome of a multivariate statistical analysis, providing a comprehensive view of the environmental features influencing N2 fixation. A principal component analysis (PCA; Fig. 7 and Tables S2 and S5) generated two components (or axes) explaining 68 % of the system's variability. Axis 1 illustrates the productivity of the system, or more precisely the oligotrophic state towards which it was evolving. Axis 1 is defined by a strong positive relation with surface temperature (reflecting the onset of stratification, particularly for stations Bel-11 and Bel-13; Fig. 7) and an inverse relation with PP and associated variables (Chl a, , ), which reflects the prevailing post-bloom conditions of the system. Sites characterized by a moderate (Bel-3 and Bel-5) to high (Bel-7, Geo-21 and to a lesser extent Geo-13) PP appear indeed tightly linked to these PP-associated variables as illustrated in Fig. 7. Axis 2 is defined by the positive relation with surface salinity and P* (Fig. 7) and reflects the advection of surface waters of subtropical origin for stations Bel-11, Bel-13 and Geo-13. For stations Geo-1 and Geo-2, the inverse relation with surface salinity (Fig. 7) is interpreted to reflect fluvial inputs (Tonnard et al., 2018). Finally, this statistical analysis indicates that N2 fixation activity was likely influenced by the two PCA components, tentatively identified as productivity (Axis 1) and surface water advection (Axis 2) from the shelf and the subtropical region.
The present work highlights the occurrence of elevated N2 fixation activities (81–1533 µmol N m−2 d−1) in spring 2014 in open waters of the temperate eastern North Atlantic, off the Iberian Peninsula. These rates exceed those reported by others for the Iberian Basin but which were largely obtained outside the bloom period (from <0.1 to 140 µmol N m−2 d−1). In contrast, we did not detect any N2 fixation activity in the central Bay of Biscay. At sites where significant N2 fixation activity was measured, rates were similar to or up to an order of magnitude larger than values reported for the eastern tropical and subtropical North Atlantic, regions commonly believed to represent the main areas harbouring oceanic N2 fixation for the eastern Atlantic. Assuming that the carbon versus nitrogen requirements by these N2 fixers obeyed the Redfield stoichiometry, N2 fixation was found to contribute 1 %–3 % of the euphotic layer daily PP and even up to 23 %–25 % at the sites where N2 fixation activities were the highest. The prymnesiophyte–symbiont Candidatus Atelocyanobacterium thalassa (UCYN-A) contributed the most to the nifH sequences recovered at the two sites where N2 fixation activity was the highest, while the remaining sequences belonged exclusively to heterotrophic bacteria. We speculate that the unexpectedly high N2 fixation activity recorded at the time of our study was sustained by (i) organic matter availability in these open waters, resulting from the prevailing vernal bloom to post-bloom conditions, in combination with (ii) excess phosphorus signatures which appeared to be tightly related to diazotrophic activity particularly at the two most active sites. Yet, these observations and hypotheses rely on the availability of dFe with evidence for input from shelf waters and pulsed atmospheric dust deposition being a significant source of iron. Further studies are required to investigate this possible link between N2 fixation activity and phytoplankton bloom under iron-replete conditions in the studied region and similar environments, as these would be required to be considered in future assessment of global N2 fixation.
The data associated with the paper are available from the corresponding author upon request.
The supplement related to this article is available online at: https://doi.org/10.5194/bg-16-999-2019-supplement.
VR, VM, FP, GS, ME, JR, LC and FrD contributed to mounting the research project and contributed to funding this work. DFB, XL, VR, FF, NL, HP, FP, GS, LC and FrD were involved in the collection of seawater samples and/or carrying out the on-board incubation experiments during the Belgica BG2014/14 and GEOVIDE cruises. DFB, XL, FlD, FF and FrD were involved in the processing of stable isotope incubation experiments (N2 fixation and primary production), while XL, NB, NL MT, MG, HP, FP and LC were involved in nutrient, trace element and particulate organic pool assessments. DFB, VR, VM, SG and JL were involved in the analysis and treatment of biomolecular data. DFB drafted the manuscript, which was edited by all authors.
The authors declare that they have no conflict of interest.
This article is part of the special issue “GEOVIDE, an international GEOTRACES study along the OVIDE section in the North Atlantic and in the Labrador Sea (GA01)”. It is not associated with a conference.
We thank the Captains and the crews of R/V Belgica and R/V
Pourquoi pas? for their skilful logistic support. A very special
thank goes to the chief scientists Géraldine Sarthou and Pascale Lherminier
of the GEOVIDE expedition for the great work experience and wonderful support
on-board. We would like to give special thanks to Pierre Branellec, Michel
Hamon, Catherine Kermabon, Philippe Le Bot, Stéphane Leizour, Olivier
Ménage (Laboratoire d'Océanographie Physique et Spatiale), Fabien
Pérault and Emmanuel de Saint Léger (Division Technique de l'INSU,
Plouzané, France) for their technical expertise during clean CTD
deployments. We thank Arnout Roukaerts and David Verstraeten for their
assistance with laboratory analyses at the Vrije Universiteit Brussel. We
acknowledge Ryan Barkhouse for the collection of the DNA samples during the
GEOVIDE cruise, Jennifer Tolman and Jenni-Marie Ratten for the nifH
amplification and tag sequencing. David Lherminer, Paul Tréguer, Emilie
Grossteffan and Manon Le Goff are gratefully acknowledged for providing us
with the shipboard physicochemical data including CTD and nitrate plus
nitrite data from the GEOVIDE expedition. Ship time for the Belgica BG2014/14
cruise was granted by Operational Directorate “Natural Environment” (OD
Nature) of the Royal Institute of Natural Sciences, Belgium. OD Nature
(Ostend) is also acknowledged for their assistance in CTD operations and data
acquisition on-board the R/V Belgica. This work was financed by the
Flanders Research Foundation (FWO contract G0715.12N) and Vrije Universiteit
Brussel, R&D, Strategic Research Plan “Tracers of Past & Present
Global Changes”, and is a Belgian contribution to SOLAS. Additional funding
was provided by the Fund for Scientific Research – FNRS (F.R.S.-FNRS) of the
Wallonia-Brussels Federation (convention no. J.0150.15). Xuefeng Li was a
FNRS doctorate aspirant fellow (mandate no. FC99216). This study was also
supported, through the GEOVIDE expedition, by the French National Research
Agency (ANR-13-B506-0014), the Institut National des Sciences de L'Univers
(INSU) of the Centre National de la Recherche Scientifique (CNRS) and the
French Institute for Marine Science (Ifremer). This work was logistically
supported by DT-INSU and GENAVIR. This publication is also a contribution to
the Labex OT-Med (ANR-11-LABEX-0061; http://www.otmed.fr/, last access:
15 April 2018) funded by the “Investissements d'Avenir”, French Government
project of the French National Research Agency (ANR;
http://www.agence-nationale-recherche.fr/, last access: 15 April 2018)
through the A*Midex project (ANR-11-IDEX-0001-02), funding Virginie Riou
during the preparation of the manuscript. Finally, this work was also
supported by an NSERC Discovery grant and Ocean Frontier Institute (OFI)
grant (Canada First Research Excellence Funds) to Julie LaRoche, and the OFI
postdoctoral fellow Debany Fonseca-Batista.
Edited by: Zhongjun Jia
Reviewed by: two anonymous referees
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