The development of hyperspectral core scanning has facilitated high spatial/temporal pigment reconstructions indicative of changes in bioproductivity and was so far limited to those bacteriochlorophylls derived from Chromatiaceae (purple sulfur bacteria) to reconstruct changes in water column redox conditions and meromixis. This is the first study that reconstructs and quantifies Chlorobi-derived bacteriochlorophylls and its derivatives at high resolution in lake sediments. Therefore, this paper yields more insight into temporal variations of oxygenic and anoxygenic phototrophic communities, and provides a non-destructive tool for more detailed reconstructions of photic zone euxinia in meromictic lakes.