Articles | Volume 22, issue 3
https://doi.org/10.5194/bg-22-785-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-22-785-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
An elucidatory model of oxygen's partial pressure inside substomatal cavities
Department of Applied Physics, University of Granada, Granada, 18071, Spain
Andalusian Institute for Earth System Research (IISTA), Granada, 18071, Spain
Related authors
Andrew S. Kowalski
EGUsphere, https://doi.org/10.5194/egusphere-2025-2814, https://doi.org/10.5194/egusphere-2025-2814, 2025
This preprint is open for discussion and under review for Hydrology and Earth System Sciences (HESS).
Short summary
Short summary
This manuscript demonstrates that a mass-based (inertial) framework is essential to the correct definition of diffusive transport, and therefore for defining Ficks first law. It invalidates the molar-based framework used by Roderick and Shakespeare (2025) to identify the contribution of the Soret effect (mass transport due to a temperature gradient) to open-water evaporation.
Andrew S. Kowalski, Ivan A. Janssens, and Óscar Pérez-Priego
EGUsphere, https://doi.org/10.5194/egusphere-2025-2695, https://doi.org/10.5194/egusphere-2025-2695, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
Humidification of air reduces the abundances of dry-air gas components such as oxygen, explaining why tropical humidity can be "stifling". This is overlooked due to the common expression of gas concentrations as fractions of dry air. Such neglect of water vapour also masks the key role of its sources and sinks in activating transport mechanisms of other gases. Humidity should be quantified whenever reporting gas concentrations.
Sergio Aranda-Barranco, Penélope Serrano-Ortiz, Andrew S. Kowalski, and Enrique P. Sánchez-Cañete
SOIL, 11, 213–232, https://doi.org/10.5194/soil-11-213-2025, https://doi.org/10.5194/soil-11-213-2025, 2025
Short summary
Short summary
This study investigated soil respiration and the main factors involved in a semi-arid environment (olive grove). For this purpose, 1 year's worth of automatic multi-chamber measurements was used, accompanied by ecosystem respiration data obtained using the eddy covariance technique. The soil respiration annual balance, Q10 parameter, rain pulses, and spatial and temporal variability of soil respiration are presented in this paper.
Ihab Alfadhel, Ignacio Peralta-Maraver, Isabel Reche, Enrique P. Sánchez-Cañete, Sergio Aranda-Barranco, Eva Rodríguez-Velasco, Andrew S. Kowalski, and Penélope Serrano-Ortiz
Biogeosciences, 21, 5117–5129, https://doi.org/10.5194/bg-21-5117-2024, https://doi.org/10.5194/bg-21-5117-2024, 2024
Short summary
Short summary
Inland saline lakes are crucial in the global carbon cycle, but increased droughts may alter their carbon exchange capacity. We measured CO2 and CH4 fluxes in a Mediterranean saline lake using the eddy covariance method under dry and wet conditions. We found the lake acts as a carbon sink during wet periods but not during droughts. These results highlight the importance of saline lakes in carbon sequestration and their vulnerability to climate-change-induced droughts.
Andrew S. Kowalski
EGUsphere, https://doi.org/10.5194/egusphere-2025-2814, https://doi.org/10.5194/egusphere-2025-2814, 2025
This preprint is open for discussion and under review for Hydrology and Earth System Sciences (HESS).
Short summary
Short summary
This manuscript demonstrates that a mass-based (inertial) framework is essential to the correct definition of diffusive transport, and therefore for defining Ficks first law. It invalidates the molar-based framework used by Roderick and Shakespeare (2025) to identify the contribution of the Soret effect (mass transport due to a temperature gradient) to open-water evaporation.
Andrew S. Kowalski, Ivan A. Janssens, and Óscar Pérez-Priego
EGUsphere, https://doi.org/10.5194/egusphere-2025-2695, https://doi.org/10.5194/egusphere-2025-2695, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
Humidification of air reduces the abundances of dry-air gas components such as oxygen, explaining why tropical humidity can be "stifling". This is overlooked due to the common expression of gas concentrations as fractions of dry air. Such neglect of water vapour also masks the key role of its sources and sinks in activating transport mechanisms of other gases. Humidity should be quantified whenever reporting gas concentrations.
Sergio Aranda-Barranco, Penélope Serrano-Ortiz, Andrew S. Kowalski, and Enrique P. Sánchez-Cañete
SOIL, 11, 213–232, https://doi.org/10.5194/soil-11-213-2025, https://doi.org/10.5194/soil-11-213-2025, 2025
Short summary
Short summary
This study investigated soil respiration and the main factors involved in a semi-arid environment (olive grove). For this purpose, 1 year's worth of automatic multi-chamber measurements was used, accompanied by ecosystem respiration data obtained using the eddy covariance technique. The soil respiration annual balance, Q10 parameter, rain pulses, and spatial and temporal variability of soil respiration are presented in this paper.
Ihab Alfadhel, Ignacio Peralta-Maraver, Isabel Reche, Enrique P. Sánchez-Cañete, Sergio Aranda-Barranco, Eva Rodríguez-Velasco, Andrew S. Kowalski, and Penélope Serrano-Ortiz
Biogeosciences, 21, 5117–5129, https://doi.org/10.5194/bg-21-5117-2024, https://doi.org/10.5194/bg-21-5117-2024, 2024
Short summary
Short summary
Inland saline lakes are crucial in the global carbon cycle, but increased droughts may alter their carbon exchange capacity. We measured CO2 and CH4 fluxes in a Mediterranean saline lake using the eddy covariance method under dry and wet conditions. We found the lake acts as a carbon sink during wet periods but not during droughts. These results highlight the importance of saline lakes in carbon sequestration and their vulnerability to climate-change-induced droughts.
Cited articles
Aparecido, L. M. T., Woo, S., Suazo, C., Hultine, K. R., and Blonder, B.: High water use in desert plants exposed to extreme heat, Ecol. Lett., 23, 1189–1200, https://doi.org/10.1111/ele.13516, 2020.
De Kauwe, M. G., Medlyn, B. E., Pitman, A. J., Drake, J. E., Ukkola, A., Griebel, A., Pendall, E., Prober, S., and Roderick, M.: Examining the evidence for decoupling between photosynthesis and transpiration during heat extremes, Biogeosciences, 16, 903–916, https://doi.org/10.5194/bg-16-903-2019, 2019.
Diao, H., Cernusak, L. A., Saurer, M., Gessler, A., Siegwolf, R. T. W., and Lehmann, M. M.: Uncoupling of stomatal conductance and photosynthesis at high temperatures: mechanistic insights from online stable isotope techniques, New Phytol., 241, 2366–2378, https://doi.org/10.1111/nph.19558, 2024.
Giancoli D. C.: General Physics, Prentice-Hall, Englewood Cliffs, 892 pp., ISBN 0-13-350884-6, 1984.
IPCC: Climate change 2021 – the physical science basis, Cambridge University Press, 43, 22–23, https://doi.org/10.1017/9781009157896, 2021.
Jarman, P. D.: The diffusion of carbon dioxide and water vapour through stomata, J. Exp. Bot., 25, 927–936, 1974.
Kowalski, A. S.: The boundary condition for vertical velocity and its interdependence with surface gas exchange, Atmos. Chem. Phys., 17, 8177–8187, https://doi.org/10.5194/acp-17-8177-2017, 2017.
Krich, C., Mahecha, M. D., Migliavacca, M., De Kauwe, M. G., Griebel, A., Runge, J., and Miralles, D. G., Decoupling between ecosystem photosynthesis and transpiration: A last resort against overheating, Environ. Res. Lett., 17, 044013, https://doi.org/10.1088/1748-9326/ac583e, 2022.
Marchin, R. M., Medlyn, B. E., Tjoelker, M. G., and Ellsworth, D. S.: Decoupling between stomatal conductance and photosynthesis occurs under extreme heat in broadleaf tree species regardless of water access, Glob. Change Biol., 29, 6319–6335, https://doi.org/10.1111/gcb.16929, 2023.
Mott, K. A. and Parkhurst, D. F.: Stomatal responses to humidity in air and helox, Plant Cell Environ., 14, 509–515, 1991.
Pankasem, N., Hsu, P.-K., Lopez, B. N. K., Franks, P. J., and Schroeder, J. I.: Warming triggers stomatal opening by enhancement of photosynthesis and ensuing guard cell CO2 sensing, whereas higher temperatures induce a photosynthesis-uncoupled response, New Phytol., 244, 1847–1863, https://doi.org/10.1111/nph.20121, 2024.
Parkhurst, D. F.: Diffusion of CO2 and other gases inside leaves, New Phytol., 126, 449-479, 1994.
Schymanski, S. J. and Or, D.: Leaf-scale experiments reveal an important omission in the Penman–Monteith equation, Hydrol. Earth Syst. Sci., 21, 685–706, https://doi.org/10.5194/hess-21-685-2017, 2017.
Sun, W., Maseyk, C., Lett, C., and Seibt, U., Restricted internal diffusion weakens transpiration–photosynthesis coupling during heatwaves: Evidence from leaf carbonyl sulphide exchange, Plant Cell Environ., 47, 1813–1833, 2024.
von Caemmerer, S. and Farquhar, G. D.: Some relationships between the biochemistry of photosynthesis and the gas exchange of leaves, Planta, 153, 376–387, 1981.
Short summary
The laws of physics show that leaf oxygen is not photosynthetically enriched but extremely dilute due to the overwhelming effects of humidification. This challenges the prevailing diffusion-only paradigm regarding leaf gas exchanges because non-diffusive transport is required. Such transport also explains why fluxes of carbon dioxide and water vapour become decoupled at very high temperatures, as has been observed but not explained by plant physiologists.
The laws of physics show that leaf oxygen is not photosynthetically enriched but extremely...
Altmetrics
Final-revised paper
Preprint