Articles | Volume 4, issue 4
https://doi.org/10.5194/bg-4-627-2007
© Author(s) 2007. This work is licensed under
the Creative Commons Attribution-NonCommercial-ShareAlike 2.5 License.
the Creative Commons Attribution-NonCommercial-ShareAlike 2.5 License.
Special issue:
https://doi.org/10.5194/bg-4-627-2007
© Author(s) 2007. This work is licensed under
the Creative Commons Attribution-NonCommercial-ShareAlike 2.5 License.
the Creative Commons Attribution-NonCommercial-ShareAlike 2.5 License.
Quantifying biologically and physically induced flow and tracer dynamics in permeable sediments
F. J. R. Meysman
Centre for Estuarine and Marine Ecology (CEME), The Netherlands Institute of Ecology (NIOO-KNAW), Korringaweg 7, 4401 NT Yerseke, The Netherlands
O. S. Galaktionov
Centre for Estuarine and Marine Ecology (CEME), The Netherlands Institute of Ecology (NIOO-KNAW), Korringaweg 7, 4401 NT Yerseke, The Netherlands
P. L. M. Cook
Max Planck Institute for Marine Microbiology, Celsiusstr. 1, Bremen, 28359, Germany
now at: CSIRO Land and Water, 120 Meiers Rd Indooroopilly, 4075, Qld, Australia
F. Janssen
Max Planck Institute for Marine Microbiology, Celsiusstr. 1, Bremen, 28359, Germany
M. Huettel
Department of Oceanography, Florida State University, Tallahassee, FL 32306-4320, USA
J. J. Middelburg
Centre for Estuarine and Marine Ecology (CEME), The Netherlands Institute of Ecology (NIOO-KNAW), Korringaweg 7, 4401 NT Yerseke, The Netherlands
Viewed
Total article views: 2,678 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 01 Feb 2013, article published on 08 Dec 2006)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
1,236 | 1,302 | 140 | 2,678 | 119 | 96 |
- HTML: 1,236
- PDF: 1,302
- XML: 140
- Total: 2,678
- BibTeX: 119
- EndNote: 96
Total article views: 2,067 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 01 Feb 2013, article published on 09 Aug 2007)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
1,004 | 953 | 110 | 2,067 | 100 | 93 |
- HTML: 1,004
- PDF: 953
- XML: 110
- Total: 2,067
- BibTeX: 100
- EndNote: 93
Total article views: 611 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 01 Feb 2013, article published on 08 Dec 2006)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
232 | 349 | 30 | 611 | 19 | 3 |
- HTML: 232
- PDF: 349
- XML: 30
- Total: 611
- BibTeX: 19
- EndNote: 3
Cited
44 citations as recorded by crossref.
- Linking behaviours, sediment reworking, bioirrigation and oxygen dynamics in a soft-bottom ecosystem engineer: The mud shrimp Upogebia pusilla (Petagna 1792) L. Pascal et al. 10.1016/j.jembe.2019.05.007
- Packing variations on a ripple of nearly monodisperse dry sand M. Louge et al. 10.1029/2009JF001384
- Nutrient cycling in bedform induced hyporheic zones L. Bardini et al. 10.1016/j.gca.2012.01.025
- Biogeochemical cycles in sediment and water column of the Wadden Sea: The example Spiekeroog Island in a regional context M. Beck & H. Brumsack 10.1016/j.ocecoaman.2012.05.026
- A case for addressing the unresolved role of permeable shelf sediments in ocean denitrification E. Chua et al. 10.1002/lol2.10218
- The kinetics of denitrification in permeable sediments V. Evrard et al. 10.1007/s10533-012-9789-x
- Density Effect of Eisenia sp. Epigeic Earthworms on the Hydraulic Conductivity of Sand Filters for Wastewater Treatment O. Gilibert et al. 10.3390/w14071048
- Bedforms as Biocatalytic Filters: A Pumping and Streamline Segregation Model for Nitrate Removal in Permeable Sediments M. Azizian et al. 10.1021/acs.est.5b01941
- Scaling hyporheic exchange and its influence on biogeochemical reactions in aquatic ecosystems B. O'Connor & J. Harvey 10.1029/2008WR007160
- Silicic acid flux to the ocean from tidal permeable sediments: A modeling study R. Chassagne et al. 10.1016/j.cageo.2012.02.014
- Dredging-induced turbid plumes affect bio-irrigation and biogeochemistry in sediments inhabited by Lanice conchilega (Pallas, 1766) S. Mestdagh et al. 10.1093/icesjms/fsy122
- Parasitism in ecosystem engineer species: A key factor controlling marine ecosystem functioning L. Pascal et al. 10.1111/1365-2656.13236
- Using a Thermal Proxy to Examine Sediment–Water Exchange in Mid-Continental Shelf Sandy Sediments W. Savidge et al. 10.1007/s10498-016-9295-1
- Seasonal variability in ecosystem functioning across estuarine gradients: The role of sediment communities and ecosystem processes S. Mestdagh et al. 10.1016/j.marenvres.2020.105096
- Sediment diagenesis models: Review of approaches, challenges and opportunities D. Paraska et al. 10.1016/j.envsoft.2014.05.011
- Rapid Redox Signal Transmission by “Cable Bacteria” beneath a Photosynthetic Biofilm S. Malkin et al. 10.1128/AEM.02682-14
- A lattice-automaton bioturbation simulator with coupled physics, chemistry, and biology in marine sediments (eLABS v0.2) Y. Kanzaki et al. 10.5194/gmd-12-4469-2019
- Allometric scaling of faunal-mediated ecosystem functioning: A case study on two bioturbators in contrasting sediments X. Fang et al. 10.1016/j.ecss.2021.107323
- First-Order Contaminant Removal in the Hyporheic Zone of Streams: Physical Insights from a Simple Analytical Model S. Grant et al. 10.1021/es501694k
- Denitrification, Anammox, and N2 Production in Marine Sediments A. Devol 10.1146/annurev-marine-010213-135040
- Integrated modeling of metals biogeochemistry: Potential and limits V. Iordache et al. 10.1016/j.chemer.2008.12.001
- Burrow ventilation and associated porewater irrigation by the polychaete Marenzelleria viridis C. Quintana et al. 10.1016/j.jembe.2010.12.006
- Worldwide measurements of bioturbation intensity, ventilation rate, and the mixing depth of marine sediments M. Solan et al. 10.1038/s41597-019-0069-7
- The negligible effect of bed form migration on denitrification in hyporheic zones of permeable sediments A. Kessler et al. 10.1002/2014JG002852
- Basal Pressure Variations Induced by a Turbulent Flow Over a Wavy Surface P. Claudin et al. 10.3389/fphy.2021.682564
- Predator effects on the feeding and bioirrigation activity of ecosystem-engineered Lanice conchilega reefs B. De Smet et al. 10.1016/j.jembe.2015.11.005
- Enrichment and shifts in macrobenthic assemblages in an offshore wind farm area in the Belgian part of the North Sea D. Coates et al. 10.1016/j.marenvres.2013.12.008
- The impact of sedimentary alkalinity release on the water column CO<sub>2</sub> system in the North Sea H. Brenner et al. 10.5194/bg-13-841-2016
- Hyporheic exchange and streambed filtration of suspended particles D. Karwan & J. Saiers 10.1029/2011WR011173
- Constraining denitrification in permeable wave-influenced marine sediment using linked hydrodynamic and biogeochemical modeling M. Cardenas et al. 10.1016/j.epsl.2008.08.016
- Seepage‐induced penetration of water vapor and dust beneath ripples and dunes M. Louge et al. 10.1029/2009JF001385
- Oil biodegradation in permeable marine sediments: Effects of benthic pore-water advection and solute exchange X. Geng et al. 10.1016/j.jhazmat.2022.129211
- Influence of buried Ulva lactuca on denitrification in permeable sediments M. Bourke et al. 10.3354/meps10611
- Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment L. Pascal et al. 10.1016/j.jembe.2016.01.008
- Turbulence‐Driven Clogging of Hyporheic Zones by Fine Particle Filtration E. Saavedra Cifuentes et al. 10.1029/2023GL105002
- What is bioturbation? The need for a precise definition for fauna in aquatic sciences E. Kristensen et al. 10.3354/meps09506
- A three-dimensional reactive transport model for sediments, incorporating microniches Ł. Sochaczewski et al. 10.1071/EN08006
- Pore pressure in a wind‐swept rippled bed below the suspension threshold R. Musa et al. 10.1002/2014JF003293
- Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments Y. Chen et al. 10.1038/s41396-021-01111-9
- Seeing the Unseen—Bioturbation in 4D: Tracing Bioirrigation in Marine Sediment Using Positron Emission Tomography and Computed Tomography M. Delefosse et al. 10.1371/journal.pone.0122201
- Ambient groundwater flow diminishes nitrate processing in the hyporheic zone of streams M. Azizian et al. 10.1002/2016WR020048
- Hydrodynamic Forcing Mobilizes Cu in Low-Permeability Estuarine Sediments M. Xie et al. 10.1021/acs.est.5b04576
- Modelling nutrient exchange at the sediment–water interface of river systems M. Thouvenot et al. 10.1016/j.jhydrol.2007.05.001
- The driving forces of porewater and groundwater flow in permeable coastal sediments: A review I. Santos et al. 10.1016/j.ecss.2011.10.024
39 citations as recorded by crossref.
- Linking behaviours, sediment reworking, bioirrigation and oxygen dynamics in a soft-bottom ecosystem engineer: The mud shrimp Upogebia pusilla (Petagna 1792) L. Pascal et al. 10.1016/j.jembe.2019.05.007
- Packing variations on a ripple of nearly monodisperse dry sand M. Louge et al. 10.1029/2009JF001384
- Nutrient cycling in bedform induced hyporheic zones L. Bardini et al. 10.1016/j.gca.2012.01.025
- Biogeochemical cycles in sediment and water column of the Wadden Sea: The example Spiekeroog Island in a regional context M. Beck & H. Brumsack 10.1016/j.ocecoaman.2012.05.026
- A case for addressing the unresolved role of permeable shelf sediments in ocean denitrification E. Chua et al. 10.1002/lol2.10218
- The kinetics of denitrification in permeable sediments V. Evrard et al. 10.1007/s10533-012-9789-x
- Density Effect of Eisenia sp. Epigeic Earthworms on the Hydraulic Conductivity of Sand Filters for Wastewater Treatment O. Gilibert et al. 10.3390/w14071048
- Bedforms as Biocatalytic Filters: A Pumping and Streamline Segregation Model for Nitrate Removal in Permeable Sediments M. Azizian et al. 10.1021/acs.est.5b01941
- Scaling hyporheic exchange and its influence on biogeochemical reactions in aquatic ecosystems B. O'Connor & J. Harvey 10.1029/2008WR007160
- Silicic acid flux to the ocean from tidal permeable sediments: A modeling study R. Chassagne et al. 10.1016/j.cageo.2012.02.014
- Dredging-induced turbid plumes affect bio-irrigation and biogeochemistry in sediments inhabited by Lanice conchilega (Pallas, 1766) S. Mestdagh et al. 10.1093/icesjms/fsy122
- Parasitism in ecosystem engineer species: A key factor controlling marine ecosystem functioning L. Pascal et al. 10.1111/1365-2656.13236
- Using a Thermal Proxy to Examine Sediment–Water Exchange in Mid-Continental Shelf Sandy Sediments W. Savidge et al. 10.1007/s10498-016-9295-1
- Seasonal variability in ecosystem functioning across estuarine gradients: The role of sediment communities and ecosystem processes S. Mestdagh et al. 10.1016/j.marenvres.2020.105096
- Sediment diagenesis models: Review of approaches, challenges and opportunities D. Paraska et al. 10.1016/j.envsoft.2014.05.011
- Rapid Redox Signal Transmission by “Cable Bacteria” beneath a Photosynthetic Biofilm S. Malkin et al. 10.1128/AEM.02682-14
- A lattice-automaton bioturbation simulator with coupled physics, chemistry, and biology in marine sediments (eLABS v0.2) Y. Kanzaki et al. 10.5194/gmd-12-4469-2019
- Allometric scaling of faunal-mediated ecosystem functioning: A case study on two bioturbators in contrasting sediments X. Fang et al. 10.1016/j.ecss.2021.107323
- First-Order Contaminant Removal in the Hyporheic Zone of Streams: Physical Insights from a Simple Analytical Model S. Grant et al. 10.1021/es501694k
- Denitrification, Anammox, and N2 Production in Marine Sediments A. Devol 10.1146/annurev-marine-010213-135040
- Integrated modeling of metals biogeochemistry: Potential and limits V. Iordache et al. 10.1016/j.chemer.2008.12.001
- Burrow ventilation and associated porewater irrigation by the polychaete Marenzelleria viridis C. Quintana et al. 10.1016/j.jembe.2010.12.006
- Worldwide measurements of bioturbation intensity, ventilation rate, and the mixing depth of marine sediments M. Solan et al. 10.1038/s41597-019-0069-7
- The negligible effect of bed form migration on denitrification in hyporheic zones of permeable sediments A. Kessler et al. 10.1002/2014JG002852
- Basal Pressure Variations Induced by a Turbulent Flow Over a Wavy Surface P. Claudin et al. 10.3389/fphy.2021.682564
- Predator effects on the feeding and bioirrigation activity of ecosystem-engineered Lanice conchilega reefs B. De Smet et al. 10.1016/j.jembe.2015.11.005
- Enrichment and shifts in macrobenthic assemblages in an offshore wind farm area in the Belgian part of the North Sea D. Coates et al. 10.1016/j.marenvres.2013.12.008
- The impact of sedimentary alkalinity release on the water column CO<sub>2</sub> system in the North Sea H. Brenner et al. 10.5194/bg-13-841-2016
- Hyporheic exchange and streambed filtration of suspended particles D. Karwan & J. Saiers 10.1029/2011WR011173
- Constraining denitrification in permeable wave-influenced marine sediment using linked hydrodynamic and biogeochemical modeling M. Cardenas et al. 10.1016/j.epsl.2008.08.016
- Seepage‐induced penetration of water vapor and dust beneath ripples and dunes M. Louge et al. 10.1029/2009JF001385
- Oil biodegradation in permeable marine sediments: Effects of benthic pore-water advection and solute exchange X. Geng et al. 10.1016/j.jhazmat.2022.129211
- Influence of buried Ulva lactuca on denitrification in permeable sediments M. Bourke et al. 10.3354/meps10611
- Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment L. Pascal et al. 10.1016/j.jembe.2016.01.008
- Turbulence‐Driven Clogging of Hyporheic Zones by Fine Particle Filtration E. Saavedra Cifuentes et al. 10.1029/2023GL105002
- What is bioturbation? The need for a precise definition for fauna in aquatic sciences E. Kristensen et al. 10.3354/meps09506
- A three-dimensional reactive transport model for sediments, incorporating microniches Ł. Sochaczewski et al. 10.1071/EN08006
- Pore pressure in a wind‐swept rippled bed below the suspension threshold R. Musa et al. 10.1002/2014JF003293
- Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments Y. Chen et al. 10.1038/s41396-021-01111-9
5 citations as recorded by crossref.
- Seeing the Unseen—Bioturbation in 4D: Tracing Bioirrigation in Marine Sediment Using Positron Emission Tomography and Computed Tomography M. Delefosse et al. 10.1371/journal.pone.0122201
- Ambient groundwater flow diminishes nitrate processing in the hyporheic zone of streams M. Azizian et al. 10.1002/2016WR020048
- Hydrodynamic Forcing Mobilizes Cu in Low-Permeability Estuarine Sediments M. Xie et al. 10.1021/acs.est.5b04576
- Modelling nutrient exchange at the sediment–water interface of river systems M. Thouvenot et al. 10.1016/j.jhydrol.2007.05.001
- The driving forces of porewater and groundwater flow in permeable coastal sediments: A review I. Santos et al. 10.1016/j.ecss.2011.10.024
Saved (preprint)
Latest update: 26 Dec 2024
Altmetrics
Final-revised paper
Preprint