Articles | Volume 5, issue 3
https://doi.org/10.5194/bg-5-749-2008
© Author(s) 2008. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-5-749-2008
© Author(s) 2008. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Colimitation of decomposition by substrate and decomposers – a comparison of model formulations
T. Wutzler
Max-Planck institute for Biogeochemistry, Jena, Hans Knöll Str. 10, 07745 Jena
M. Reichstein
Max-Planck institute for Biogeochemistry, Jena, Hans Knöll Str. 10, 07745 Jena
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- Soil microbial biomass and its activity estimated by kinetic respiration analysis – Statistical guidelines T. Wutzler et al. https://doi.org/10.1016/j.soilbio.2011.10.004
- Explicitly representing soil microbial processes in Earth system models W. Wieder et al. https://doi.org/10.1002/2015GB005188
- Soil carbon and nitrogen mineralization: Theory and models across scales S. Manzoni & A. Porporato https://doi.org/10.1016/j.soilbio.2009.02.031
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- Can we model observed soil carbon changes from a dense inventory? A case study over England and Wales using three versions of the ORCHIDEE ecosystem model (AR5, AR5-PRIM and O-CN) B. Guenet et al. https://doi.org/10.5194/gmd-6-2153-2013
- Investigating biological control over soil carbon temperature sensitivity T. BALSER & D. WIXON https://doi.org/10.1111/j.1365-2486.2009.01946.x
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- Soil organic carbon models need independent time-series validation for reliable prediction J. Le Noë et al. https://doi.org/10.1038/s43247-023-00830-5
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77 citations as recorded by crossref.
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- SOMPROF: A vertically explicit soil organic matter model M. Braakhekke et al. https://doi.org/10.1016/j.ecolmodel.2011.02.015
- Microbial models with minimal mineral protection can explain long-term soil organic carbon persistence D. Woolf & J. Lehmann https://doi.org/10.1038/s41598-019-43026-8
- Effects of forest management on productivity and carbon sequestration: A review and hypothesis A. Noormets et al. https://doi.org/10.1016/j.foreco.2015.05.019
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- K-Model-A Continuous Model of Soil Organic Carbon Dynamics Y. Feng https://doi.org/10.1097/SS.0b013e3181bb0f80
- How to link soil C pools with CO2 fluxes? Y. Kuzyakov https://doi.org/10.5194/bg-8-1523-2011
- Model of apparent and real priming effects: Linking microbial activity with soil organic matter decomposition S. Blagodatsky et al. https://doi.org/10.1016/j.soilbio.2010.04.005
- Microbial growth rate is a stronger predictor of soil organic carbon than carbon use efficiency X. He et al. https://doi.org/10.1038/s41559-025-02961-8
- Soil microbial biomass and its activity estimated by kinetic respiration analysis – Statistical guidelines T. Wutzler et al. https://doi.org/10.1016/j.soilbio.2011.10.004
- Explicitly representing soil microbial processes in Earth system models W. Wieder et al. https://doi.org/10.1002/2015GB005188
- Soil carbon and nitrogen mineralization: Theory and models across scales S. Manzoni & A. Porporato https://doi.org/10.1016/j.soilbio.2009.02.031
- Decomposition rate as an emergent property of optimal microbial foraging S. Manzoni et al. https://doi.org/10.3389/fevo.2023.1094269
- Microbial Models for Simulating Soil Carbon Dynamics: A Review A. Chandel et al. https://doi.org/10.1029/2023JG007436
- Diffusion limitations and Michaelis–Menten kinetics as drivers of combined temperature and moisture effects on carbon fluxes of mineral soils F. Moyano et al. https://doi.org/10.5194/bg-15-5031-2018
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- Micro-scale modeling of pesticide degradation coupled to carbon turnover in the detritusphere: model description and sensitivity analysis H. Pagel et al. https://doi.org/10.1007/s10533-013-9851-3
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- Is there a linear relationship between priming effect intensity and the amount of organic matter input? B. Guenet et al. https://doi.org/10.1016/j.apsoil.2010.09.006
- Responses of two nonlinear microbial models to warming and increased carbon input Y. Wang et al. https://doi.org/10.5194/bg-13-887-2016
- Both priming and temperature sensitivity of soil organic matter decomposition depend on microbial biomass – An incubation study S. Thiessen et al. https://doi.org/10.1016/j.soilbio.2012.10.029
- Soil physics meets soil biology: Towards better mechanistic prediction of greenhouse gas emissions from soil S. Blagodatsky & P. Smith https://doi.org/10.1016/j.soilbio.2011.12.015
- Tree Species and Stand Density: The Effects on Soil Organic Matter Contents, Decomposability and Susceptibility to Microbial Priming O. Menyailo et al. https://doi.org/10.3390/f13020284
- Comparing microbial and chemical kinetics for modelling soil organic carbon decomposition using the DecoChem v1.0 and DecoBio v1.0 models G. Xenakis & M. Williams https://doi.org/10.5194/gmd-7-1519-2014
- Representing and Understanding the Carbon Cycle Using the Theory of Compartmental Dynamical Systems C. Sierra et al. https://doi.org/10.1029/2018MS001360
- MODELING SPATIOTEMPORAL VARIABILITY OF CARBON STOCKS (REVIEW) I. Ryzhova et al. https://doi.org/10.55959/MSU0137-0944-17-2026-81-2-17-26
- ORCHIDEE-MICT (v8.4.1), a land surface model for the high latitudes: model description and validation M. Guimberteau et al. https://doi.org/10.5194/gmd-11-121-2018
- Priming effects: Interactions between living and dead organic matter Y. Kuzyakov https://doi.org/10.1016/j.soilbio.2010.04.003
- Priming of soil organic matter decomposition scales linearly with microbial biomass response to litter input in steppe vegetation C. Xiao et al. https://doi.org/10.1111/oik.01728
- Application of the ORCHIDEE global vegetation model to evaluate biomass and soil carbon stocks of Qinghai‐Tibetan grasslands K. Tan et al. https://doi.org/10.1029/2009GB003530
- Soil C and N models that integrate microbial diversity B. Louis et al. https://doi.org/10.1007/s10311-016-0571-5
- An assessment of cumulative CO2 efflux as proxy of organic matter turnover time in the soil priming effect: analysis using the lumped parameter approach T. Sengupta et al. https://doi.org/10.1007/s13762-024-05569-w
- How does nitrogen control soil organic matter turnover and composition? – Theory and model C. Yeung et al. https://doi.org/10.5194/bg-22-7535-2025
- Priming of soil organic matter mineralisation is intrinsically insensitive to temperature C. Ghee et al. https://doi.org/10.1016/j.soilbio.2013.06.020
- Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review M. Dignac et al. https://doi.org/10.1007/s13593-017-0421-2
- Asymmetry of carbon sequestrations by plant and soil after forestation regulated by soil nitrogen S. Hong et al. https://doi.org/10.1038/s41467-023-38911-w
- Contribution of sorption, DOC transport and microbial interactions to the 14C age of a soil organic carbon profile: Insights from a calibrated process model B. Ahrens et al. https://doi.org/10.1016/j.soilbio.2015.06.008
- Responses of soil heterotrophic respiration to moisture availability: An exploration of processes and models F. Moyano et al. https://doi.org/10.1016/j.soilbio.2013.01.002
- Estimating of terrestrial carbon storage and its internal carbon exchange under equilibrium state Z. Wang https://doi.org/10.1016/j.ecolmodel.2019.03.008
- Priming effect: bridging the gap between terrestrial and aquatic ecology B. Guenet et al. https://doi.org/10.1890/09-1968.1
- Effects of climate change on key soil characteristics and strategy to enhance climate resilience of smallholder farming: an analysis of a pomegranate-field in a coastal Tunisian oasis Z. Haj-Amor et al. https://doi.org/10.1007/s12665-020-09222-w
- Complexity, climate change and soil carbon: A systems approach to microbial temperature response D. Wixon & T. Balser https://doi.org/10.1002/sres.995
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al. https://doi.org/10.1111/ejss.13142
- Priming effect and microbial diversity in ecosystem functioning and response to global change: a modeling approach using the SYMPHONY model N. Perveen et al. https://doi.org/10.1111/gcb.12493
- Microbial community regulation of extracellular enzyme production can mediate patterns of particulate and mineral-associated organic matter accumulation in undersaturated soils P. Hansen et al. https://doi.org/10.1016/j.soilbio.2025.110056
- Dynamic upscaling of decomposition kinetics for carbon cycling models A. Chakrawal et al. https://doi.org/10.5194/gmd-13-1399-2020
- Temperature-associated increases in the global soil respiration record B. Bond-Lamberty & A. Thomson https://doi.org/10.1038/nature08930
- Heterotrophic respiration in disturbed forests: A review with examples from North America M. Harmon et al. https://doi.org/10.1029/2010JG001495
- The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications D. Jacques et al. https://doi.org/10.1515/johh-2017-0049
- Priming and substrate quality interactions in soil organic matter models T. Wutzler & M. Reichstein https://doi.org/10.5194/bg-10-2089-2013
- The relative importance of decomposition and transport mechanisms in accounting for soil organic carbon profiles B. Guenet et al. https://doi.org/10.5194/bg-10-2379-2013
- Adaptation of microbial resource allocation affects modelled long term soil organic matter and nutrient cycling T. Wutzler et al. https://doi.org/10.1016/j.soilbio.2017.08.031
- High organic inputs explain shallow and deep SOC storage in a long-term agroforestry system – combining experimental and modeling approaches R. Cardinael et al. https://doi.org/10.5194/bg-15-297-2018
- A general mathematical framework for representing soil organic matter dynamics C. Sierra & M. Müller https://doi.org/10.1890/15-0361.1
- Spatial biases reduce the ability of Earth system models to simulate soil heterotrophic respiration fluxes B. Guenet et al. https://doi.org/10.5194/bg-21-657-2024
- Convergence in simulating global soil organic carbon by structurally different models after data assimilation F. Tao et al. https://doi.org/10.1111/gcb.17297
- Models of soil organic matter decomposition: the SoilR package, version 1.0 C. Sierra et al. https://doi.org/10.5194/gmd-5-1045-2012
- Modeling organic transformations by microorganisms of soils in six contrasting ecosystems: Validation of the MOMOS model M. Pansu et al. https://doi.org/10.1029/2009GB003527
- Evaluating controls on coupled hydrologic and vegetation dynamics in a humid continental climate watershed using a subsurface‐land surface processes model C. Shen et al. https://doi.org/10.1002/wrcr.20189
- Modelling the transformation of organic materials in soil with nuclear magnetic resonance spectra M. Pansu et al. https://doi.org/10.1111/ejss.12405
- The impacts of CENTURY model initialization scenarios on soil organic carbon dynamics simulation in French long-term experiments B. Dimassi et al. https://doi.org/10.1016/j.geoderma.2017.09.038
- A framework for representing microbial decomposition in coupled climate models K. Todd-Brown et al. https://doi.org/10.1007/s10533-011-9635-6
- Simulated response of soil organic carbon density to climate change in the Northern Tibet permafrost region D. Zhao et al. https://doi.org/10.1016/j.geoderma.2021.115455
- The knowns, known unknowns and unknowns of sequestration of soil organic carbon U. Stockmann et al. https://doi.org/10.1016/j.agee.2012.10.001
- Towards a representation of priming on soil carbon decomposition in the global land biosphere model ORCHIDEE (version 1.9.5.2) B. Guenet et al. https://doi.org/10.5194/gmd-9-841-2016
- Optimal enzyme allocation leads to the constrained enzyme hypothesis: the Soil Enzyme Steady Allocation Model (SESAM; v3.1) T. Wutzler et al. https://doi.org/10.5194/gmd-17-2705-2024
- Frontiers and challenges in soil respiration research: from measurements to model-data integration R. Vargas et al. https://doi.org/10.1007/s10533-010-9462-1
- Changes in soil organic carbon storage predicted by Earth system models during the 21st century K. Todd-Brown et al. https://doi.org/10.5194/bg-11-2341-2014
- A benchmark for soil organic matter degradation under variably saturated flow conditions M. Jia et al. https://doi.org/10.1007/s10596-019-09862-3
- Microbial Diversity Indexes Can Explain Soil Carbon Dynamics as a Function of Carbon Source B. Louis et al. https://doi.org/10.1371/journal.pone.0161251
- Can we model observed soil carbon changes from a dense inventory? A case study over England and Wales using three versions of the ORCHIDEE ecosystem model (AR5, AR5-PRIM and O-CN) B. Guenet et al. https://doi.org/10.5194/gmd-6-2153-2013
- Investigating biological control over soil carbon temperature sensitivity T. BALSER & D. WIXON https://doi.org/10.1111/j.1365-2486.2009.01946.x
- Sensitivity Analysis of Six Soil Organic Matter Models Applied to the Decomposition of Animal Manures and Crop Residues D. Cavalli et al. https://doi.org/10.4081/ija.2016.757
- Review and analysis of strengths and weaknesses of agro-ecosystem models for simulating C and N fluxes L. Brilli et al. https://doi.org/10.1016/j.scitotenv.2017.03.208
- Soil organic carbon models need independent time-series validation for reliable prediction J. Le Noë et al. https://doi.org/10.1038/s43247-023-00830-5
- Impact of priming on global soil carbon stocks B. Guenet et al. https://doi.org/10.1111/gcb.14069
- Implications of carbon saturation model structures for simulated nitrogen mineralization dynamics C. White et al. https://doi.org/10.5194/bg-11-6725-2014
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