Bird, D. F., Juniper, S. K., Ricciardi-Rigault, M., Martineu, P., Prairie, Y. T., and Calvert, S. E.: Subsurface viruses and bacteria in Holocene/Late Pleistocene sediments of Saanich Inlet, BC: ODP Holes 1033B and 1034B, Leg 169S, Mar. Geol., 174, 227–239, https://doi.org/10.1016/S0025-3227(00)00152-3, 2001.
Birnbaum, S. J., Wireman, J. W., and Borowski, R.: Silica precipitation by the anaerobic sulphate reducing bacterium
Desulfovibrio desulfuricans: effects upon cellmorphology and implications for preservation, in: Origin, Evolution, and Modern Aspects of Biomineralization in Plants and Animals, Crick, R.E., Plenum Press, New York, USA, 507–516, 1989.
Bize, A., Karlsson, E. A., Ekefjärd, K., Quax, T. E. F., Pina, M., Prevost, M. C., Forterre, P., Tenaillon, O., Bernander, R., and Prangishvili, D.: A unique virus release in the Archaea, P. Natl. Acad. Sci. USA, 106, 11306–11311, https://doi.org/10.1073/pnas.0901238106, 2009.
Borriss, M., Helmke, E., Hanschke, R., and Schweder, T.: Isolation and characterization of marine psychrophilic phage–host systems from Arctic sea ice, Extremophiles, 7, 377–384, https://doi.org/10.1007/s00792-003-0334-7, 2003.
Daughney, C. J., Châtellier, X., Chan, A., Kenward, P., Fortin, D., Suttle, C. A., and Fowle, D. A.: Adsorption and precipitation of iron from seawater on a marine bacteriophage (PWH3A-P1), Mar. Chem., 91, 101–115, https://doi.org/10.1016/j.marchem.2004.06.003, 2004.
Dyall-Smith, M., Tang., S. L., and Bath, C.: Haloarchaeal viruses: how diverse are they?, Res. Microbiol., 154, 309–313, https://doi.org/10.1016/S0923-2508(03)00076-7, 2003.
Erauso, G., Reysenbach, A. L., Godfroy, A., Meunier, J. R., Crump, B., Partensky, F., Baross, J. A., Marteinsson, V., Barbier, G., Pace, N. R., and Prieur, D.:
Pyrococcus abyssi sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent, Arch. Microbiol., 160, 338–349, 1993.
Forterre, P.: A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein, Trends Genet., 18, 236–238, https://doi.org/10.1016/S0168-9525(02)02650-1, 2002.
Forterre, P.: Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes : A hypothesis for the origin of cellular domain, P. Natl. Acad. Sci. USA, 103, 3669–3674, https://doi.org/10.1073/pnas.0510333103, 2006.
Forterre, P.: Manipulation of cellular syntheses and the nature of viruses: The virocell concept, C.R. Chim., 14, 392–399, https://doi.org/10.1016/j.crci.2010.06.007, 2011.
Forterre, P. and Prangishvili, D.: The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties, Ann. NY. Acad. Sci., 1178, 65–77, https://doi.org/10.1111/j.1749-6632.2009.04993.x, 2009a.
Geslin, C., Le Romancer, M., Erauso, G., Gaillard, M., Perrot, G., and Prieur, D.: PAV1, the first virus-like particle isolated from a hyperthermophilic Euryarchaeote,
Pyrococcus abyssi, J. Bacteriol., 185, 3888–3894, https://doi.org/10.1128/JB.185.13.3888-3894.2003, 2003a.
Geslin, C., Le Romancer, M., Gaillard, M., Erauso, G., and Prieur, P.: Observation of virus-like particles in high temperature enrichment cultures from deep-sea hydrothermal vents, Res Microbiol., 154, 303–307, https://doi.org/10.1016/S0923-2508(03)00075-5, 2003b.
Geslin, C., Le Romancer, M., Gaillard, M., and Prieur, D.: Diversité virale associée aux écosystèmes hydrothermaux océaniques profonds et aux sources chaudes terrestres, Virologie, 9, 357–366, 2005.
Gibson Jr., E. K., McKay, D. S., Thomas-Keprta, K. L., Wentworth, S. J., Westall, F., Steele, A., Romanek, C. S., Bell, M. S., and Toporski, J.: Life on Mars: evaluation of the evidence within Martian meteorites ALH 84001, Nakhla and Shergotty, Precambrian Res., 106, 15–34, https://doi.org/10.1016/S0301-9268(00)00122-4, 2001.
Gorlas, A., Geslin, C., and Prieur, D.: TV1, the first virus-like particle of
Thermococcus, a hyperthermophilic Archaea genus, Origins Life Evol. B., 39, p. 62, 2009.
Gorlas, A., Alain, K., Bienvenu, N., Isaac, S., and Geslin, C.:
Thermococcus prieurii sp. nov., a novel hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent at the East Pacific Rise, Int. J. Syst. Evol. Micr., submitted, 2011.
Gowing, M. M.: Large viruses and infected microeukaryotes in Ross Sea summer pack ice habitats, Mar. Biol., 142, 1029–1040, https://doi.org/10.1007/s00227-003-1015-x, 2003.
Gunnarsson, I. and Arnórsson, S.: Amorphous silica solubility and the thermodynamic properties of H
4SiO°
4 in the range of 0° to 350 °C at P$_{\rm sat}$, Geochim. Cosmochim. Ac., 64, 2295–2307, https://doi.org/10.1016/S0016-7037(99)00426-3, 2000.
Jiang, S., Steward, G., Jellison, R., Chu, W., and Choi, S.: Abundance, distribution and diversity of viruses in alkaline hypersaline Mono Lake, California, Microb. Ecol., 47, 9–17, https://doi.org/10.1007/s00248-003-1023-x, 2004.
Konhauser, K. O., Jones, B., Reysenbach, A. L., and Renaut, R. W.: Hot spring sinters: Keys to understanding Earth's earliest life forms, Can. J. Earth Sci., 40, 1713–1724, 2003.
Konhauser, K. O., Jones, B., Phoenix, V. R., Ferris, G., and Renaut, R. W.: The microbial role in hot spring silicification, Ambio, 33, 552–558, 2004.
Koonin, E. V. and Dolja, V. V.: Evolution of complexity in the viral world: the dawn of a new vision. Virus Res., 117, 1–4, https://doi.org/10.1016/j.virusres.2006.01.018, 2006.
Koonin, E. V., Senkevich, T. G., and Dolja, V. V.: The ancient virus world and evolution of cells, Biol. Direct, 1, 29, https://doi.org/10.1186/1745-6150-1-29, 2006.
Krupovic, M. and Bamford, D. H.: Virus evolution: how far does the double beta-barrel viral lineage extend?, Nat. Rev. Microbiol., 6, 941–9488, https://doi.org/10.1038/nrmicro2033, 2008.
Kyle, J. E., Eydal, H. S. C., Ferris, F. G., and Pedersen, K.: Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden, ISME J., 2, 571–574, https://doi.org/10.1038/ismej.2008.18, 2008a.
Kyle, J. E., Pedersen, K., and Ferris, F. G.: Virus mineralization at low pH in the Rio Tinto, Spain, Geomicrobiol. J., 25, 338–345, https://doi.org/10.1080/01490450802402703, 2008b.
Laidler, J. R. and Stedman, K. M.: Virus silicification under simulated hot spring conditions, Astrobiology, 10, 569–576, https://doi.org/10.1089/ast.2010.0463, 2010.
Lalonde, S. V., Konhauser, K. O., Reysenbach, A. L., and Ferris, F. G.: The experimental silicification of Aquificales and their role in hot spring formation, Geobiology, 3, 41–52, https://doi.org/10.1111/j.1472-4669.2005.00042.x, 2005.
La Scola, B., Audic, S., Robert, C., Jungang, L., de Lamballerie, X., Drancourt, M., Birtles, R., Claverie, J. M., and Raoult, D.: A giant virus in Amoebae, Science, 299, p. 2033, https://doi.org/10.1126/science.1081867, 2003.
Le Romancer, M., Gaillard, M., Geslin, C., and Prieur, D.: Viruses in extremes environments, Reviews in Environmental Science and Biotechnology, 6, 17–31, https://doi.org/10.1007/s11157-006-0011-2, 2007.
Maranger, R., Bird, D. F., and Juniper, S. K.: Viral and bacterial dynamics in Arctic sea ice during the spring algal bloom near Resolute, N.W.T., Canada, Mar. Ecol.-Prog. Ser., 111, 121–127, 1994.
Marteinsson, V. T., Watrin, L., Prieur, D., Caprais, J. C., Raguénès, G., and Erauso G.: Phenotypic characterization, DNA similarities, and protein profiles of twenty sulfur-metabolizing hyperthermophilic anaerobic Archaea isolated from hydrothermal vents in the southwestern Pacific Ocean, Int. J. Syst. Bacteriol., 45, 623–632, https://doi.org/10.1099/00207713-45-4-623, 1995.
Martin, A., Yeats, S., Janekovic, D., Reiter, W. D., Aicher, W., and Zillig, W.: SAV1, a temperate u.v.-inducible DNA virus-like particle from the archarbacterium
Sulfolobus acidocaldarius isolate B12, EMBO J., 3, 2165–2168, 1984.
McKay, D. S., Gibson Jr., E. K., Thomas-Keprta, K. L., Vali, H., Romanek, C. S., Clemett, S. J., Chillier, X. D. F., Maechling, C. R., and Zare, R. N.: Search for Past Life on Mars: Possible Relic Biogenic Activity in Martian Meteorite ALH84001, Science, 273, 924–930, https://doi.org/10.1126/science.273.5277.924, 1996.
Moreira, D. and López-García, P.: Ten reasons to exclude viruses from the tree of life, Nat. Rev. Microbiol., 7, 306–311, https://doi.org/10.1038/nrmicro2108, 2009.
Orange, F., Westall, F., Disnar, J. R., Prieur, D., Bienvenu, N., Le Romancer, M., and Défarge, C.: Experimental silicification of the extremophilic Archaea
Pyrococcus abyssi and
Methanocaldococcus jannaschii. Applications in the search for evidence of life in early Earth and extraterrestrial rocks, Geobiology, 7, 403–418, https://doi.org/10.1111/j.1472-4669.2009.00212.x, 2009.
Orange, F., Disnar, J. R., Westall, F., Prieur, D., and Baillif, P.: Metal cation binding by the hyperthermophilic microorganism, Archaea
Methanocaldococcus jannaschii, and its effects on silicification, Palaeontology, accepted, 2011.
Oren, A., Bratbak, G., and Heldal, M.: Occurrence of virus like particles in the Dead Sea, Extremophiles, 1, 143–149, https://doi.org/10.1007/s007920050027, 1997.
Ortmann, A. C. and Suttle, C. A.: High abundances of viruses in deep-sea hydrothermal vent system indicate viral mediated microbial mortality, Deep-Sea Res. Pt. I, 52, 1515–1527, https://doi.org/10.1016/j.dsr.2005.04.002, 2005.
Ortmann, A. C., Wiedenheft, B., Douglas, T., and Young, M.: Hot crenarchaeal viruses reveal deep evolutionary connections, Nat. Rev. Microbiol., 4, 520–528, https://doi.org/10.1038/nrmicro1444, 2006.
Pagaling, E., Haigh, R. D., Grant, W. D., Cowan, D. A., Jones, B. E., Ma, Y., Ventosa, A., and Heaphy, S.: Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China, BMC Genomics, 8, 410, https://doi.org/10.1186/1471-2164-8-410, 2007.
Poinar, G. P. and Poinar, R.: Fossil evidence of insect pathogens, J. Invertebr. Pathol., 89, 243–250, https://doi.org/10.1016/j.jip.2005.05.007, 2005.
Prangishvili, D., Arnold, H. P., Götz, D., Ziese, U., Holz, I., Kristjansson, J. K., and Zillig, W.: A novel virus family, the
Rudiviridae: Structure, virus-host like interactions and genome variability of the Sulfolobus viruses SIRV1 and SIRV2, Genetics, 152, 1387–1396, 1999.
Prangishvili, D., Forterre, P., and Garrett, R. A.: Viruses of the Archaea: a unifying view, Nat. Rev. Microbiol., 4, 837–848, https://doi.org/10.1038/nrmicro1527, 2006a.
Prangishvili, D., Garrett, R. A., and Koonin, E. V.: Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life, Virus Res., 117, 52–67, https://doi.org/10.1016/j.virusres.2006.01.007, 2006b.
Prigent, M., Leroy, M., Confalonieri, F., Dutertre, M., and DuBow M. S.: A diversity of bacteriophage forms and genomes can be isolated from the surface sands of the Sahara Desert, Extremophiles, 9, 289–296, https://doi.org/10.1007/s00792-005-0444-5, 2005.
Rachel, R., Bettstetter, M., Hedlund, B. P., Häring, M., Kessler, A., Stetter, K. O., and Prangishvili, D.: Remarkable morphological diversity of viruses and virus-like particles in hot terrestrial environments, Arch. Virol., 147, 2419–2429, https://doi.org/10.1007/s00705-002-0895-2, 2002.
Raoult, D., Audic, S., Robert, C., Abergel, C., Renesto, P., Ogata H., La Scola, B., Suzan, M., and Claverie, J. M.: The 1.2-megabase genome sequence of Mimivirus, Science, 306, 1344–1350, https://doi.org/10.1126/science.1101485, 2004.
Rice, G., Stedman, K., Snyder, J., Wiedenheft, B., Willits, D., Brumfield, S., and McDermott, T.: Viruses from extreme thermal environments, P. Natl. Acad. Sci. USA, 98, 13341–13345, https://doi.org/10.1073/pnas.231170198, 2001.
Schelble, R. T., Hall, J. A., Nealson, K. H., and Steele, A.: DNA perseverance of microorganisms exposed to silica: an experimental study, Geobiology, 6, 503–511, https://doi.org/10.1111/j.1472-4669.2008.00177.x, 2008.
Schultze-Lam, S., Ferris, F. G., Kohnauser, K. O., and Wiese, R. G.: In situ silicification of an Icelandic microbial mat: implications for microfossil formation, Can. J. Earth Sci., 32, 2021–2026, 1995.
Sime-Ngando, T., Lucas, S., Robin, A., Pause Tucker, K., Colombet, J., Bettarel, Y., Desmond, E., Gribaldo, S., Forterre, P., Breitbart, M., and Prangishvili, D.: Diversity of virus–host systems in hypersaline Lake Retba, Senegal, Environ. Microbiol., https://doi.org/10.1111/j.1462-2920.2010.02323.x, in press, 2010.
Templeton, M. R., Andrews, R. C., and Hofmann, R.: Impact of iron particles in groundwater on the UV inactivation of bacteriophages MS2 and T4, J. Appl. Microbiol., 101, 732–741, https://doi.org/10.1111/j.1365-2672.2006.02980.x, 2006.
Toporski, J. K. W., Steele, A., Westall, F., Thomas-Keprta, K. L., and McKay, D. S.: The simulated silicification of bacteria – new clues to the modes and timing of bacterial preservation and implications for the search for extraterrestrial microfossils, Astrobiology, 2, 1–26, 2002.
Vestergaard, G., Shah, S. A., Bize, A., Reitberger, W., Reuteur, M., Phan, H., Brigel, A., Rachel, R., Garrett, R. A., and Prangishvili, D.:
Stygiolobus Rod-Shaped Virus and the interplay of Crenarchaeal Rudiviruses with the CRISPR Antiviral System, J. Bacteriol., 190, 6837–6845, https://doi.org/10.1128/JB.00795-08, 2008.
Westall, F.: Early life: nature, distribution and evolution, in: Origins and evolution of life, an astrobiological perspective, edited by: Gargaud, M., López-García, P., and Martin, H., Cambridge University Press, Cambridge, United-Kingdom, 391–413, 2010.
You, Y., Han, J., Chiu, P. C., and Jin, Y.: Removal and inactivation of waterborne viruses using zerovalent iron, Environ. Sci. Technol., 39, 9263–9269, https://doi.org/10.1021/es050829j, 2005.
Zillig, W., Kletzin, A., Schleper, C., Holz, I., Janekovic, D., Hain, J., Lanzendörfer, M., and Kristjansoon, J. K.: Screening for Sulfolobales, their plasmids, and their viruses in Icelandic solfataras, Syst. Appl. Microbiol., 16, 609–628, 1994.
