Articles | Volume 8, issue 10
https://doi.org/10.5194/bg-8-3041-2011
© Author(s) 2011. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-8-3041-2011
© Author(s) 2011. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Distribution of typical denitrifying functional genes and diversity of the nirS-encoding bacterial community related to environmental characteristics of river sediments
S. Huang
School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510275, China
C. Chen
School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510275, China
Department of Natural Resource Sciences, McGill University, Ste-Anne-de-Bellevue, Qecbec H9X 3V9, Canada
X. Yang
School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510275, China
Q. Wu
School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510275, China
R. Zhang
School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, Guangdong 510275, China
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Cited
61 citations as recorded by crossref.
- Linkages between anammox and denitrifying bacterial communities and nitrogen loss rates in high‐elevation rivers S. Zhang et al. 10.1002/lno.11641
- Dynamics of nitrogen genes in intertidal sediments of Darwin Harbour and their connection to N-biogeochemistry J. Fortune et al. 10.1016/j.marenvres.2024.106500
- Implication of Nitrifying and Denitrifying Bacteria for Nitrogen Removal in a Shallow Lake F. Wang et al. 10.1002/clen.201500319
- Defluorination of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) by Acidimicrobium sp. Strain A6 S. Huang & P. Jaffé 10.1021/acs.est.9b04047
- Impacts of Long-Term Irrigation of Domestic Treated Wastewater on Soil Biogeochemistry and Bacterial Community Structure D. Wafula et al. 10.1128/AEM.02188-15
- Diversity and Abundance of the Denitrifying Microbiota in the Sediment of Eastern China Marginal Seas and the Impact of Environmental Factors M. Gao et al. 10.1007/s00248-016-0906-6
- Shifts in the spatiotemporal distribution and sources of nitrous oxide in sediment cores from the Bohai Sea and South Yellow Sea S. Li et al. 10.1016/j.marpolbul.2022.114390
- Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment Y. Wang et al. 10.3389/fmicb.2017.01153
- Anaerobic degradation of perfluorooctanoic acid (PFOA) in biosolids by Acidimicrobium sp. strain A6 S. Huang et al. 10.1016/j.jhazmat.2021.127699
- Multi-scale factors affecting composition, diversity, and abundance of sediment denitrifying microorganisms in Yangtze lakes X. Jiang et al. 10.1007/s00253-017-8537-5
- Linking microbial community and biological functions to redox potential during black-odor river sediment remediation C. Chen et al. 10.1007/s11356-020-09805-x
- Anaerobic Biodegradation of Pyrene by Paracoccus denitrificans Under Various Nitrate/Nitrite-Reducing Conditions X. Yang et al. 10.1007/s11270-013-1578-1
- Effect of Eastern Oysters (Crassostrea virginica) and Seasonality on Nitrite Reductase Gene Abundance (nirS, nirK, nrfA) in an Urban Estuary S. Lindemann et al. 10.1007/s12237-015-9989-4
- Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen Y. Lipsewers et al. 10.3389/fmicb.2016.01661
- Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria S. Murdock et al. 10.1128/AEM.02753-16
- Nitrate removal by combining chemical and biostimulation approaches using micro-zero valent iron and lactic acid D. Puigserver et al. 10.1016/j.scitotenv.2022.156841
- Metagenomic assessment of nitrate-contaminated mine wastewaters and optimization of complete denitrification by indigenous enriched bacteria K. Moloantoa et al. 10.3389/fenvs.2023.1148872
- N2O production by denitrification in an urban river: evidence from isotopes, functional genes, and dissolved organic matter N. Thuan et al. 10.1007/s10201-017-0524-0
- Community Composition of NirS-Type Denitrifier in a Shallow Eutrophic Lake J. Yang et al. 10.1007/s00248-013-0265-5
- Nitrogen species control the interaction between NO3--N reduction and aniline degradation and microbial community structure in the oxic-anoxic transition zone X. Liu et al. 10.1007/s11356-021-12627-0
- Carcass decay deteriorates water quality and modifies the nirS denitrifying communities in different degradation stages Q. Yu et al. 10.1016/j.scitotenv.2021.147185
- Low nitrous oxide concentration and spatial microbial community transition across an urban river affected by treated sewage Y. Zhou et al. 10.1016/j.watres.2022.118276
- Diversity of denitrifying bacteria in the greenwater system of coastal aquaculture V. Kathiravan & K. Krishnani 10.1007/s40071-014-0074-6
- Diversity and distribution of <i>amoA</i>-type nitrifying and <i>nirS</i>-type denitrifying microbial communities in the Yangtze River estuary Y. Zhang et al. 10.5194/bg-11-2131-2014
- Enhanced phenanthrene degradation in river sediments using a combination of biochar and nitrate X. Yang et al. 10.1016/j.scitotenv.2017.11.130
- Environmental factors affecting the presence of Acidimicrobiaceae and ammonium removal under iron-reducing conditions in soil environments S. Huang et al. 10.1016/j.soilbio.2016.04.012
- Influence of suspended mariculture on vertical distribution profiles of bacteria in sediment from Daya Bay, Southern China R. Shi et al. 10.1016/j.marpolbul.2019.07.043
- Actinobacterial Nitrate Reducers and Proteobacterial Denitrifiers Are Abundant in N 2 O-Metabolizing Palsa Peat K. Palmer & M. Horn 10.1128/AEM.00810-12
- Microbial Nitrogen-Cycle Gene Abundance in Soil of Cropland Abandoned for Different Periods . Huhe et al. 10.1371/journal.pone.0154697
- Effects of organic carbon consumption on denitrifier community composition and diversity along dissolved oxygen vertical profiles in lake sediment surface P. Hong et al. 10.1007/s00343-019-9103-z
- Metabolic response of prokaryotic microbes to sporadic hypoxia in a eutrophic subtropical estuary Y. Li et al. 10.1016/j.marpolbul.2020.111064
- New Dimensions in Microbial Ecology—Functional Genes in Studies to Unravel the Biodiversity and Role of Functional Microbial Groups in the Environment J. Imhoff 10.3390/microorganisms4020019
- Enhanced microbial nitrification-denitrification processes in a subtropical metropolitan river network Y. Xuan et al. 10.1016/j.watres.2022.118857
- Meta-analysis: Global patterns and drivers of denitrification, anammox and DNRA rates in wetland and marine ecosystems J. Lun et al. 10.1016/j.scitotenv.2024.176694
- Spatiotemporal distribution and interaction of denitrifying functional genes in a novel DAS-NUA biofilter used for groundwater nitrate treatment W. Xu et al. 10.1016/j.scitotenv.2020.136595
- Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile F. Bak et al. 10.1093/femsec/fiz008
- Effects of Potamogeton crispus decline in the rhizosphere on the abundance of anammox bacteria and nirS denitrifying bacteria☆ J. Hu et al. 10.1016/j.envpol.2020.114018
- Microbial abundance and diversity investigations along rivers: Current knowledge and future directions K. Li et al. 10.1002/wat2.1547
- Nitrate Removal by Combining Chemical and Biostimulation Approaches D. Puigserver et al. 10.2139/ssrn.4059054
- Denitrification in paddy soil as a cooperative process of different nitrogen oxide reducers, revealed by metatranscriptomic analysis of denitrification-induced soil microcosm Y. Masuda et al. 10.1080/00380768.2019.1622401
- Shifts in the high-resolution spatial distribution of dissolved N2O and the underlying microbial communities and processes in the Pearl River Estuary X. Cheng et al. 10.1016/j.watres.2023.120351
- Comparative Study of Denitrifying-MBBRs with Different Polyethylene Carriers for Advanced Nitrogen Removal of Real Reverse Osmosis Concentrate T. Wang et al. 10.3390/ijerph17082667
- Benthic clade II-type nitrous oxide reducers suppress nitrous oxide emissions in shallow lakes K. Song et al. 10.1016/j.scitotenv.2024.172908
- Rates of N2 production and diversity and abundance of functional genes associated with denitrification and anaerobic ammonium oxidation in the sediment of the Amundsen Sea Polynya, Antarctica A. Choi et al. 10.1016/j.dsr2.2015.07.016
- Treated and untreated wastewater effluents alter river sediment bacterial communities involved in nitrogen and sulphur cycling M. Martínez-Santos et al. 10.1016/j.scitotenv.2018.03.229
- Major role of ammonia-oxidizing bacteria in N<sub>2</sub>O production in the Pearl River estuary L. Ma et al. 10.5194/bg-16-4765-2019
- Earthworm functional groups are related to denitrifier activity in riparian soils C. CHEN et al. 10.1016/S1002-0160(20)60084-4
- Impacts of human disturbance on the biogeochemical nitrogen cycle in a subtropical river system revealed by nitrifier and denitrifier genes J. Lin et al. 10.1016/j.scitotenv.2020.141139
- Seasonal and vertical variations in the characteristics of the nitrogen-related functional genes in sediments from urban eutrophic lakes X. Yin et al. 10.1016/j.apsoil.2019.05.027
- Effects of Sea Animal Activities on Tundra Soil Denitrification and nirS‐ and nirK-Encoding Denitrifier Community in Maritime Antarctica H. Dai et al. 10.3389/fmicb.2020.573302
- Niche Differentiation of Aerobic and Anaerobic Ammonia Oxidizers in a High Latitude Deep Oxygen Minimum Zone S. Muck et al. 10.3389/fmicb.2019.02141
- Seasonal distribution of nitrifiers and denitrifiers in urban river sediments affected by agricultural activities S. Huang et al. 10.1016/j.scitotenv.2018.06.116
- Soil denitrifier community size changes with land use change to perennial bioenergy cropping systems K. Thompson et al. 10.5194/soil-2-523-2016
- Vertical and seasonal distribution of picoplankton and functional nitrogen genes in a high‐altitude warm‐monomictic tropical lake S. Pajares et al. 10.1111/fwb.12935
- Nonlinear pattern and algal dual-impact in N2O emission with increasing trophic levels in shallow lakes Y. Zhou et al. 10.1016/j.watres.2021.117489
- Dynamic stratification and biogeochemical cycling response of microbial communities in east indian ocean ridge Y. Li et al. 10.1016/j.cej.2024.150568
- Denitrification Potential and Denitrifier Abundance in Downstream of Dams in Temperate Streams N. Vo et al. 10.7845/kjm.2014.4021
- Correlating denitrifying catabolic genes with N2O and N2 emissions from swine slurry composting G. Angnes et al. 10.1016/j.biortech.2013.04.112
- The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene M. Yazdani Foshtomi et al. 10.1371/journal.pone.0192391
- Nitrate reduction coupled with microbial oxidation of sulfide in river sediment X. Yang et al. 10.1007/s11368-012-0542-9
- Characterization of incubation experiments and development of an enrichment culture capable of ammonium oxidation under iron-reducing conditions S. Huang & P. Jaffé 10.5194/bg-12-769-2015
56 citations as recorded by crossref.
- Linkages between anammox and denitrifying bacterial communities and nitrogen loss rates in high‐elevation rivers S. Zhang et al. 10.1002/lno.11641
- Dynamics of nitrogen genes in intertidal sediments of Darwin Harbour and their connection to N-biogeochemistry J. Fortune et al. 10.1016/j.marenvres.2024.106500
- Implication of Nitrifying and Denitrifying Bacteria for Nitrogen Removal in a Shallow Lake F. Wang et al. 10.1002/clen.201500319
- Defluorination of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) by Acidimicrobium sp. Strain A6 S. Huang & P. Jaffé 10.1021/acs.est.9b04047
- Impacts of Long-Term Irrigation of Domestic Treated Wastewater on Soil Biogeochemistry and Bacterial Community Structure D. Wafula et al. 10.1128/AEM.02188-15
- Diversity and Abundance of the Denitrifying Microbiota in the Sediment of Eastern China Marginal Seas and the Impact of Environmental Factors M. Gao et al. 10.1007/s00248-016-0906-6
- Shifts in the spatiotemporal distribution and sources of nitrous oxide in sediment cores from the Bohai Sea and South Yellow Sea S. Li et al. 10.1016/j.marpolbul.2022.114390
- Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment Y. Wang et al. 10.3389/fmicb.2017.01153
- Anaerobic degradation of perfluorooctanoic acid (PFOA) in biosolids by Acidimicrobium sp. strain A6 S. Huang et al. 10.1016/j.jhazmat.2021.127699
- Multi-scale factors affecting composition, diversity, and abundance of sediment denitrifying microorganisms in Yangtze lakes X. Jiang et al. 10.1007/s00253-017-8537-5
- Linking microbial community and biological functions to redox potential during black-odor river sediment remediation C. Chen et al. 10.1007/s11356-020-09805-x
- Anaerobic Biodegradation of Pyrene by Paracoccus denitrificans Under Various Nitrate/Nitrite-Reducing Conditions X. Yang et al. 10.1007/s11270-013-1578-1
- Effect of Eastern Oysters (Crassostrea virginica) and Seasonality on Nitrite Reductase Gene Abundance (nirS, nirK, nrfA) in an Urban Estuary S. Lindemann et al. 10.1007/s12237-015-9989-4
- Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen Y. Lipsewers et al. 10.3389/fmicb.2016.01661
- Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria S. Murdock et al. 10.1128/AEM.02753-16
- Nitrate removal by combining chemical and biostimulation approaches using micro-zero valent iron and lactic acid D. Puigserver et al. 10.1016/j.scitotenv.2022.156841
- Metagenomic assessment of nitrate-contaminated mine wastewaters and optimization of complete denitrification by indigenous enriched bacteria K. Moloantoa et al. 10.3389/fenvs.2023.1148872
- N2O production by denitrification in an urban river: evidence from isotopes, functional genes, and dissolved organic matter N. Thuan et al. 10.1007/s10201-017-0524-0
- Community Composition of NirS-Type Denitrifier in a Shallow Eutrophic Lake J. Yang et al. 10.1007/s00248-013-0265-5
- Nitrogen species control the interaction between NO3--N reduction and aniline degradation and microbial community structure in the oxic-anoxic transition zone X. Liu et al. 10.1007/s11356-021-12627-0
- Carcass decay deteriorates water quality and modifies the nirS denitrifying communities in different degradation stages Q. Yu et al. 10.1016/j.scitotenv.2021.147185
- Low nitrous oxide concentration and spatial microbial community transition across an urban river affected by treated sewage Y. Zhou et al. 10.1016/j.watres.2022.118276
- Diversity of denitrifying bacteria in the greenwater system of coastal aquaculture V. Kathiravan & K. Krishnani 10.1007/s40071-014-0074-6
- Diversity and distribution of <i>amoA</i>-type nitrifying and <i>nirS</i>-type denitrifying microbial communities in the Yangtze River estuary Y. Zhang et al. 10.5194/bg-11-2131-2014
- Enhanced phenanthrene degradation in river sediments using a combination of biochar and nitrate X. Yang et al. 10.1016/j.scitotenv.2017.11.130
- Environmental factors affecting the presence of Acidimicrobiaceae and ammonium removal under iron-reducing conditions in soil environments S. Huang et al. 10.1016/j.soilbio.2016.04.012
- Influence of suspended mariculture on vertical distribution profiles of bacteria in sediment from Daya Bay, Southern China R. Shi et al. 10.1016/j.marpolbul.2019.07.043
- Actinobacterial Nitrate Reducers and Proteobacterial Denitrifiers Are Abundant in N 2 O-Metabolizing Palsa Peat K. Palmer & M. Horn 10.1128/AEM.00810-12
- Microbial Nitrogen-Cycle Gene Abundance in Soil of Cropland Abandoned for Different Periods . Huhe et al. 10.1371/journal.pone.0154697
- Effects of organic carbon consumption on denitrifier community composition and diversity along dissolved oxygen vertical profiles in lake sediment surface P. Hong et al. 10.1007/s00343-019-9103-z
- Metabolic response of prokaryotic microbes to sporadic hypoxia in a eutrophic subtropical estuary Y. Li et al. 10.1016/j.marpolbul.2020.111064
- New Dimensions in Microbial Ecology—Functional Genes in Studies to Unravel the Biodiversity and Role of Functional Microbial Groups in the Environment J. Imhoff 10.3390/microorganisms4020019
- Enhanced microbial nitrification-denitrification processes in a subtropical metropolitan river network Y. Xuan et al. 10.1016/j.watres.2022.118857
- Meta-analysis: Global patterns and drivers of denitrification, anammox and DNRA rates in wetland and marine ecosystems J. Lun et al. 10.1016/j.scitotenv.2024.176694
- Spatiotemporal distribution and interaction of denitrifying functional genes in a novel DAS-NUA biofilter used for groundwater nitrate treatment W. Xu et al. 10.1016/j.scitotenv.2020.136595
- Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile F. Bak et al. 10.1093/femsec/fiz008
- Effects of Potamogeton crispus decline in the rhizosphere on the abundance of anammox bacteria and nirS denitrifying bacteria☆ J. Hu et al. 10.1016/j.envpol.2020.114018
- Microbial abundance and diversity investigations along rivers: Current knowledge and future directions K. Li et al. 10.1002/wat2.1547
- Nitrate Removal by Combining Chemical and Biostimulation Approaches D. Puigserver et al. 10.2139/ssrn.4059054
- Denitrification in paddy soil as a cooperative process of different nitrogen oxide reducers, revealed by metatranscriptomic analysis of denitrification-induced soil microcosm Y. Masuda et al. 10.1080/00380768.2019.1622401
- Shifts in the high-resolution spatial distribution of dissolved N2O and the underlying microbial communities and processes in the Pearl River Estuary X. Cheng et al. 10.1016/j.watres.2023.120351
- Comparative Study of Denitrifying-MBBRs with Different Polyethylene Carriers for Advanced Nitrogen Removal of Real Reverse Osmosis Concentrate T. Wang et al. 10.3390/ijerph17082667
- Benthic clade II-type nitrous oxide reducers suppress nitrous oxide emissions in shallow lakes K. Song et al. 10.1016/j.scitotenv.2024.172908
- Rates of N2 production and diversity and abundance of functional genes associated with denitrification and anaerobic ammonium oxidation in the sediment of the Amundsen Sea Polynya, Antarctica A. Choi et al. 10.1016/j.dsr2.2015.07.016
- Treated and untreated wastewater effluents alter river sediment bacterial communities involved in nitrogen and sulphur cycling M. Martínez-Santos et al. 10.1016/j.scitotenv.2018.03.229
- Major role of ammonia-oxidizing bacteria in N<sub>2</sub>O production in the Pearl River estuary L. Ma et al. 10.5194/bg-16-4765-2019
- Earthworm functional groups are related to denitrifier activity in riparian soils C. CHEN et al. 10.1016/S1002-0160(20)60084-4
- Impacts of human disturbance on the biogeochemical nitrogen cycle in a subtropical river system revealed by nitrifier and denitrifier genes J. Lin et al. 10.1016/j.scitotenv.2020.141139
- Seasonal and vertical variations in the characteristics of the nitrogen-related functional genes in sediments from urban eutrophic lakes X. Yin et al. 10.1016/j.apsoil.2019.05.027
- Effects of Sea Animal Activities on Tundra Soil Denitrification and nirS‐ and nirK-Encoding Denitrifier Community in Maritime Antarctica H. Dai et al. 10.3389/fmicb.2020.573302
- Niche Differentiation of Aerobic and Anaerobic Ammonia Oxidizers in a High Latitude Deep Oxygen Minimum Zone S. Muck et al. 10.3389/fmicb.2019.02141
- Seasonal distribution of nitrifiers and denitrifiers in urban river sediments affected by agricultural activities S. Huang et al. 10.1016/j.scitotenv.2018.06.116
- Soil denitrifier community size changes with land use change to perennial bioenergy cropping systems K. Thompson et al. 10.5194/soil-2-523-2016
- Vertical and seasonal distribution of picoplankton and functional nitrogen genes in a high‐altitude warm‐monomictic tropical lake S. Pajares et al. 10.1111/fwb.12935
- Nonlinear pattern and algal dual-impact in N2O emission with increasing trophic levels in shallow lakes Y. Zhou et al. 10.1016/j.watres.2021.117489
- Dynamic stratification and biogeochemical cycling response of microbial communities in east indian ocean ridge Y. Li et al. 10.1016/j.cej.2024.150568
5 citations as recorded by crossref.
- Denitrification Potential and Denitrifier Abundance in Downstream of Dams in Temperate Streams N. Vo et al. 10.7845/kjm.2014.4021
- Correlating denitrifying catabolic genes with N2O and N2 emissions from swine slurry composting G. Angnes et al. 10.1016/j.biortech.2013.04.112
- The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene M. Yazdani Foshtomi et al. 10.1371/journal.pone.0192391
- Nitrate reduction coupled with microbial oxidation of sulfide in river sediment X. Yang et al. 10.1007/s11368-012-0542-9
- Characterization of incubation experiments and development of an enrichment culture capable of ammonium oxidation under iron-reducing conditions S. Huang & P. Jaffé 10.5194/bg-12-769-2015
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