Articles | Volume 9, issue 11
https://doi.org/10.5194/bg-9-4661-2012
© Author(s) 2012. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-9-4661-2012
© Author(s) 2012. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| Highlight paper
| 
22 Nov 2012
Research article | Highlight paper |
| 22 Nov 2012
Activity and abundance of denitrifying bacteria in the subsurface biosphere of diffuse hydrothermal vents of the Juan de Fuca Ridge
A. Bourbonnais
School of Earth and Ocean Sciences, University of Victoria, Victoria, BC V8P 5C2, Canada
S. K. Juniper
School of Earth and Ocean Sciences, University of Victoria, Victoria, BC V8P 5C2, Canada
D. A. Butterfield
Joint Institute for the Study of the Atmosphere and Ocean, University of Washington, Seattle, WA 98105-5672, USA
Pacific Marine Environmental Laboratory, National Oceanic and Atmospheric Administration, Seattle, WA 98115, USA
A. H. Devol
School of Oceanography, University of Washington, Seattle, WA 98195-7940, USA
M. M. M. Kuypers
Max Planck Institute for Marine Microbiology, Department of Biogeochemistry, 28359 Bremen, Germany
G. Lavik
Max Planck Institute for Marine Microbiology, Department of Biogeochemistry, 28359 Bremen, Germany
S. J. Hallam
University of British Columbia, Department of Microbiology and Immunology, Vancouver, BC V6T 1Z3, Canada
Graduate Programme in Bioinformatics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada
C. B. Wenk
Department of Environmental Sciences, University of Basel, 4056 Basel, Switzerland
B. X. Chang
Department of Environmental Sciences, Princeton University, Princeton, NJ 08544, USA
S. A. Murdock
School of Earth and Ocean Sciences, University of Victoria, Victoria, BC V8P 5C2, Canada
M. F. Lehmann
Department of Environmental Sciences, University of Basel, 4056 Basel, Switzerland
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Cited
30 citations as recorded by crossref.
- Vertical Niche Partitioning of Archaea and Bacteria Linked to Shifts in Dissolved Organic Matter Quality and Hydrography in North Atlantic Waters T. Rodríguez-Ramos et al. 10.3389/fmars.2021.673171
- Enrichment and Genomic Characterization of a N2O-Reducing Chemolithoautotroph From a Deep-Sea Hydrothermal Vent S. Mino et al. 10.3389/fbioe.2018.00184
- Protocols for Assessing Transformation Rates of Nitrous Oxide in the Water Column A. Bourbonnais et al. 10.3389/fmars.2021.611937
- Bacterial anomalies associated with deep sea hydrocarbon seepage along the Scotian Slope C. Li et al. 10.1016/j.dsr.2022.103955
- Biocathode denitrification of coke wastewater effluent from an industrial aeration tank: Effect of long-term adaptation R. Tang et al. 10.1016/j.bej.2017.05.022
- Thermophilic microorganisms involved in the nitrogen cycle in thermal environments: Advances and prospects X. Wang et al. 10.1016/j.scitotenv.2023.165259
- Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria S. Murdock et al. 10.1128/AEM.02753-16
- Spatially distinct, temporally stable microbial populations mediate biogeochemical cycling at and below the seafloor in hydrothermal vent fluids C. Fortunato et al. 10.1111/1462-2920.14011
- Coupled RNA-SIP and metatranscriptomics of active chemolithoautotrophic communities at a deep-sea hydrothermal vent C. Fortunato & J. Huber 10.1038/ismej.2015.258
- Comamonadaceae OTU as a Remnant of an Ancient Microbial Community in Sulfidic Waters E. Deja-Sikora et al. 10.1007/s00248-018-1270-5
- Physiological and metabolic responses of chemolithoautotrophic NO3− reducers to high hydrostatic pressure I. Pérez‐Rodríguez et al. 10.1111/gbi.12522
- Close association of active nitrifiers with Beggiatoa mats covering deep‐sea hydrothermal sediments M. Winkel et al. 10.1111/1462-2920.12316
- Evidence for microbial mediation of subseafloor nitrogen redox processes at Loihi Seamount, Hawaii J. Sylvan et al. 10.1016/j.gca.2016.10.029
- Microbial Community Structure of Deep-sea Hydrothermal Vents on the Ultraslow Spreading Southwest Indian Ridge J. Ding et al. 10.3389/fmicb.2017.01012
- In situRaman observations reveal that the gas fluxes of diffuse flow in hydrothermal systems are greatly underestimated L. Li et al. 10.1130/G50623.1
- Metaproteogenomic Profiling of Chemosynthetic Microbial Biofilms Reveals Metabolic Flexibility During Colonization of a Shallow-Water Gas Vent S. Patwardhan et al. 10.3389/fmicb.2021.638300
- Biogeochemical N signatures from rate-yield trade-offs during in vitro chemosynthetic NO3− reduction by deep-sea vent ε-Proteobacteria and Aquificae growing at different temperatures I. Pérez-Rodríguez et al. 10.1016/j.gca.2017.05.014
- Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents D. Meier et al. 10.1038/ismej.2017.37
- Nitrifier abundance and diversity peak at deep redox transition zones R. Zhao et al. 10.1038/s41598-019-44585-6
- Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin C. Sheik et al. 10.1038/ismej.2014.228
- Diversity and abundance of Bacteria and nirS-encoding denitrifiers associated with the Juan de Fuca Ridge hydrothermal system A. Bourbonnais et al. 10.1007/s13213-014-0813-3
- Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field H. Olins et al. 10.3389/fmicb.2017.01042
- Primary production and habitat stability organize marine communities A. Cramer et al. 10.1111/geb.13192
- Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system R. Anderson et al. 10.1111/j.1574-6941.2012.01478.x
- Assessing microbial processes in deep-sea hydrothermal systems by incubation at in situ temperature and pressure J. McNichol et al. 10.1016/j.dsr.2016.06.011
- Nitrite reductase activity in F420-dependent sulphite reductase (Fsr) from Methanocaldococcus jannaschii C. Heryakusuma et al. 10.1099/acmi.0.000482.v3
- Physiological and isotopic characteristics of nitrogen fixation by hyperthermophilic methanogens: Key insights into nitrogen anabolism of the microbial communities in Archean hydrothermal systems M. Nishizawa et al. 10.1016/j.gca.2014.04.021
- Upper circumpolar deep water influences microbial functional gene composition and diversity along the southern Central Indian Ridge and eastern Southwest Indian Ridge S. Fernandes et al. 10.1128/spectrum.03306-23
- Deep-sea hydrothermal ventEpsilonproteobacteriaencode a conserved and widespread nitrate reduction pathway (Nap) C. Vetriani et al. 10.1038/ismej.2013.246
- Quantitative PCR Analysis of Functional Genes in Iron-Rich Microbial Mats at an Active Hydrothermal Vent System (Lō'ihi Seamount, Hawai'i) K. Jesser et al. 10.1128/AEM.03608-14
29 citations as recorded by crossref.
- Vertical Niche Partitioning of Archaea and Bacteria Linked to Shifts in Dissolved Organic Matter Quality and Hydrography in North Atlantic Waters T. Rodríguez-Ramos et al. 10.3389/fmars.2021.673171
- Enrichment and Genomic Characterization of a N2O-Reducing Chemolithoautotroph From a Deep-Sea Hydrothermal Vent S. Mino et al. 10.3389/fbioe.2018.00184
- Protocols for Assessing Transformation Rates of Nitrous Oxide in the Water Column A. Bourbonnais et al. 10.3389/fmars.2021.611937
- Bacterial anomalies associated with deep sea hydrocarbon seepage along the Scotian Slope C. Li et al. 10.1016/j.dsr.2022.103955
- Biocathode denitrification of coke wastewater effluent from an industrial aeration tank: Effect of long-term adaptation R. Tang et al. 10.1016/j.bej.2017.05.022
- Thermophilic microorganisms involved in the nitrogen cycle in thermal environments: Advances and prospects X. Wang et al. 10.1016/j.scitotenv.2023.165259
- Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria S. Murdock et al. 10.1128/AEM.02753-16
- Spatially distinct, temporally stable microbial populations mediate biogeochemical cycling at and below the seafloor in hydrothermal vent fluids C. Fortunato et al. 10.1111/1462-2920.14011
- Coupled RNA-SIP and metatranscriptomics of active chemolithoautotrophic communities at a deep-sea hydrothermal vent C. Fortunato & J. Huber 10.1038/ismej.2015.258
- Comamonadaceae OTU as a Remnant of an Ancient Microbial Community in Sulfidic Waters E. Deja-Sikora et al. 10.1007/s00248-018-1270-5
- Physiological and metabolic responses of chemolithoautotrophic NO3− reducers to high hydrostatic pressure I. Pérez‐Rodríguez et al. 10.1111/gbi.12522
- Close association of active nitrifiers with Beggiatoa mats covering deep‐sea hydrothermal sediments M. Winkel et al. 10.1111/1462-2920.12316
- Evidence for microbial mediation of subseafloor nitrogen redox processes at Loihi Seamount, Hawaii J. Sylvan et al. 10.1016/j.gca.2016.10.029
- Microbial Community Structure of Deep-sea Hydrothermal Vents on the Ultraslow Spreading Southwest Indian Ridge J. Ding et al. 10.3389/fmicb.2017.01012
- In situRaman observations reveal that the gas fluxes of diffuse flow in hydrothermal systems are greatly underestimated L. Li et al. 10.1130/G50623.1
- Metaproteogenomic Profiling of Chemosynthetic Microbial Biofilms Reveals Metabolic Flexibility During Colonization of a Shallow-Water Gas Vent S. Patwardhan et al. 10.3389/fmicb.2021.638300
- Biogeochemical N signatures from rate-yield trade-offs during in vitro chemosynthetic NO3− reduction by deep-sea vent ε-Proteobacteria and Aquificae growing at different temperatures I. Pérez-Rodríguez et al. 10.1016/j.gca.2017.05.014
- Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents D. Meier et al. 10.1038/ismej.2017.37
- Nitrifier abundance and diversity peak at deep redox transition zones R. Zhao et al. 10.1038/s41598-019-44585-6
- Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin C. Sheik et al. 10.1038/ismej.2014.228
- Diversity and abundance of Bacteria and nirS-encoding denitrifiers associated with the Juan de Fuca Ridge hydrothermal system A. Bourbonnais et al. 10.1007/s13213-014-0813-3
- Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field H. Olins et al. 10.3389/fmicb.2017.01042
- Primary production and habitat stability organize marine communities A. Cramer et al. 10.1111/geb.13192
- Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system R. Anderson et al. 10.1111/j.1574-6941.2012.01478.x
- Assessing microbial processes in deep-sea hydrothermal systems by incubation at in situ temperature and pressure J. McNichol et al. 10.1016/j.dsr.2016.06.011
- Nitrite reductase activity in F420-dependent sulphite reductase (Fsr) from Methanocaldococcus jannaschii C. Heryakusuma et al. 10.1099/acmi.0.000482.v3
- Physiological and isotopic characteristics of nitrogen fixation by hyperthermophilic methanogens: Key insights into nitrogen anabolism of the microbial communities in Archean hydrothermal systems M. Nishizawa et al. 10.1016/j.gca.2014.04.021
- Upper circumpolar deep water influences microbial functional gene composition and diversity along the southern Central Indian Ridge and eastern Southwest Indian Ridge S. Fernandes et al. 10.1128/spectrum.03306-23
- Deep-sea hydrothermal ventEpsilonproteobacteriaencode a conserved and widespread nitrate reduction pathway (Nap) C. Vetriani et al. 10.1038/ismej.2013.246
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