Articles | Volume 11, issue 8
https://doi.org/10.5194/bg-11-2201-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-2201-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Simulating microbial degradation of organic matter in a simple porous system using the 3-D diffusion-based model MOSAIC
O. Monga
UMMISCO-Cameroun, Unité Mixte Internationale de recherche UMMISCO, Université de Yaoundé 1 (Cameroun), Institut de Recherche pour le Développement (IRD), Université de Paris 6, Paris, France
P. Garnier
INRA, AgroParisTech, UMR1091 EGC, 78850, Thiverval-Grignon, France
V. Pot
INRA, AgroParisTech, UMR1091 EGC, 78850, Thiverval-Grignon, France
E. Coucheney
CNRS, UMR7618 – Biogéochimie et Ecologie des Milieux Continentaux, 78850, Thiverval-Grignon, France
CNRS, UMR7618 – Biogéochimie et Ecologie des Milieux Continentaux, 78850, Thiverval-Grignon, France
W. Otten
The SIMBIOS Centre, University of Abertay Dundee, Kydd Building, Dundee, DD1 1HG, UK
AgroParisTech, UMR7618 – Biogéochimie et Ecologie des Milieux Continentaux, 8850, Thiverval-Grignon, France
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Cited
37 citations as recorded by crossref.
- Challenges in imaging and predictive modeling of rhizosphere processes T. Roose et al.
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al.
- Hydration and diffusion processes shape microbial community organization and function in model soil aggregates A. Ebrahimi & D. Or
- Applying population and community ecology theory to advance understanding of belowground biogeochemistry R. Buchkowski et al.
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al.
- Scenario modelling of carbon mineralization in 3D soil architecture at the microscale: Toward an accessibility coefficient of organic matter for bacteria B. Mbé et al.
- Dynamic upscaling of decomposition kinetics for carbon cycling models A. Chakrawal et al.
- Dynamical analysis and numerical simulation of a reaction-diffusion model for microbial decomposition of organic matter in 3D soil structure M. Elghandouri et al.
- Effect of resolution, reconstruction settings, and segmentation methods on the numerical calculation of saturated soil hydraulic conductivity from 3D computed tomography images V. Pot et al.
- Valorization of sawdust and water hyacinth for mycelium-based Thai Krathongs with embedded seeding plants S. Sangkawanna et al.
- Spatiotemporal simulations of 2,4-D pesticide degradation by microorganisms in 3D soil-core experiments T. Babey et al.
- Shape Descriptors for Porous Media Analysis Using Computed Tomography Images N. Ngom et al.
- Improving understanding of soil organic matter dynamics by triangulating theories, measurements, and models J. Blankinship et al.
- Modelling functional resilience of microbial ecosystems: Analysis of governing processes S. König et al.
- Review and analysis of strengths and weaknesses of agro-ecosystem models for simulating C and N fluxes L. Brilli et al.
- Geometric modelling of 3D pore space using curve skeleton: Application to computational microbiology of soil organic matter mineralization Z. Belghali et al.
- Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review M. Dignac et al.
- A voxel-based approach for simulating microbial decomposition in soil: Comparison with LBM and improvement of morphological models M. Klai et al.
- From spheres to ellipsoids: Speeding up considerably the morphological modeling of pore space and water retention in soils A. Kemgue et al.
- Reviews and syntheses: The mechanisms underlying carbon storage in soil I. Basile-Doelsch et al.
- Equifinality, sloppiness, and emergent structures of mechanistic soil biogeochemical models G. Marschmann et al.
- To what extent do uncertainty and sensitivity analyses help unravel the influence of microscale physical and biological drivers in soil carbon dynamics models? L. Vogel et al.
- Can The Pore Scale Geometry Explain Soil Sample Scale Hydrodynamic Properties? S. Smet et al.
- Control of Pore Geometry in Soil Microcosms and Its Effect on the Growth and Spread of Pseudomonas and Bacillus sp. A. Juyal et al.
- Microscale Heterogeneity of the Spatial Distribution of Organic Matter Can Promote Bacterial Biodiversity in Soils: Insights From Computer Simulations X. Portell et al.
- Microbial Controls on the Biogeochemical Dynamics in the Subsurface M. Thullner & P. Regnier
- A framework for modelling soil structure dynamics induced by biological activity K. Meurer et al.
- Sediment microbial fuel cells for bioremediation of pollutants and power generation: a review H. Hamdan & D. Salam
- Modeling the effect of soil meso- and macropores topology on the biodegradation of a soluble carbon substrate L. Vogel et al.
- Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter O. Monga et al.
- Three-dimensional distribution of water and air in soil pores: Comparison of two-phase two-relaxation-times lattice-Boltzmann and morphological model outputs with synchrotron X-ray computed tomography data V. Pot et al.
- Soil organic matter accumulation in relation to changing soil volume, mass, and structure: Concepts and calculations P. Sollins & J. Gregg
- Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry B. Mann et al.
- Soil pores and their contributions to soil carbon processes A. Kravchenko & A. Guber
- Soil Microstructures Examined Through Transmission Electron Microscopy Reveal Soil-Microorganisms Interactions F. Watteau & G. Villemin
- Physical, Chemical and Biological Effects on Soil Bacterial Dynamics in Microscale Models S. König et al.
- Spatial and temporal evolution of detritusphere hotspots at different soil moistures C. Védère et al.
37 citations as recorded by crossref.
- Challenges in imaging and predictive modeling of rhizosphere processes T. Roose et al.
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al.
- Hydration and diffusion processes shape microbial community organization and function in model soil aggregates A. Ebrahimi & D. Or
- Applying population and community ecology theory to advance understanding of belowground biogeochemistry R. Buchkowski et al.
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al.
- Scenario modelling of carbon mineralization in 3D soil architecture at the microscale: Toward an accessibility coefficient of organic matter for bacteria B. Mbé et al.
- Dynamic upscaling of decomposition kinetics for carbon cycling models A. Chakrawal et al.
- Dynamical analysis and numerical simulation of a reaction-diffusion model for microbial decomposition of organic matter in 3D soil structure M. Elghandouri et al.
- Effect of resolution, reconstruction settings, and segmentation methods on the numerical calculation of saturated soil hydraulic conductivity from 3D computed tomography images V. Pot et al.
- Valorization of sawdust and water hyacinth for mycelium-based Thai Krathongs with embedded seeding plants S. Sangkawanna et al.
- Spatiotemporal simulations of 2,4-D pesticide degradation by microorganisms in 3D soil-core experiments T. Babey et al.
- Shape Descriptors for Porous Media Analysis Using Computed Tomography Images N. Ngom et al.
- Improving understanding of soil organic matter dynamics by triangulating theories, measurements, and models J. Blankinship et al.
- Modelling functional resilience of microbial ecosystems: Analysis of governing processes S. König et al.
- Review and analysis of strengths and weaknesses of agro-ecosystem models for simulating C and N fluxes L. Brilli et al.
- Geometric modelling of 3D pore space using curve skeleton: Application to computational microbiology of soil organic matter mineralization Z. Belghali et al.
- Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review M. Dignac et al.
- A voxel-based approach for simulating microbial decomposition in soil: Comparison with LBM and improvement of morphological models M. Klai et al.
- From spheres to ellipsoids: Speeding up considerably the morphological modeling of pore space and water retention in soils A. Kemgue et al.
- Reviews and syntheses: The mechanisms underlying carbon storage in soil I. Basile-Doelsch et al.
- Equifinality, sloppiness, and emergent structures of mechanistic soil biogeochemical models G. Marschmann et al.
- To what extent do uncertainty and sensitivity analyses help unravel the influence of microscale physical and biological drivers in soil carbon dynamics models? L. Vogel et al.
- Can The Pore Scale Geometry Explain Soil Sample Scale Hydrodynamic Properties? S. Smet et al.
- Control of Pore Geometry in Soil Microcosms and Its Effect on the Growth and Spread of Pseudomonas and Bacillus sp. A. Juyal et al.
- Microscale Heterogeneity of the Spatial Distribution of Organic Matter Can Promote Bacterial Biodiversity in Soils: Insights From Computer Simulations X. Portell et al.
- Microbial Controls on the Biogeochemical Dynamics in the Subsurface M. Thullner & P. Regnier
- A framework for modelling soil structure dynamics induced by biological activity K. Meurer et al.
- Sediment microbial fuel cells for bioremediation of pollutants and power generation: a review H. Hamdan & D. Salam
- Modeling the effect of soil meso- and macropores topology on the biodegradation of a soluble carbon substrate L. Vogel et al.
- Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter O. Monga et al.
- Three-dimensional distribution of water and air in soil pores: Comparison of two-phase two-relaxation-times lattice-Boltzmann and morphological model outputs with synchrotron X-ray computed tomography data V. Pot et al.
- Soil organic matter accumulation in relation to changing soil volume, mass, and structure: Concepts and calculations P. Sollins & J. Gregg
- Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry B. Mann et al.
- Soil pores and their contributions to soil carbon processes A. Kravchenko & A. Guber
- Soil Microstructures Examined Through Transmission Electron Microscopy Reveal Soil-Microorganisms Interactions F. Watteau & G. Villemin
- Physical, Chemical and Biological Effects on Soil Bacterial Dynamics in Microscale Models S. König et al.
- Spatial and temporal evolution of detritusphere hotspots at different soil moistures C. Védère et al.
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