Articles | Volume 11, issue 10
Biogeosciences, 11, 2679–2689, 2014
Biogeosciences, 11, 2679–2689, 2014

Research article 21 May 2014

Research article | 21 May 2014

Isotopomeric characterization of nitrous oxide produced by reaction of enzymes extracted from nitrifying and denitrifying bacteria

T. Yamazaki1,*, T. Hozuki2, K. Arai2, S. Toyoda1, K. Koba4, T. Fujiwara2, and N. Yoshida5,3,1 T. Yamazaki et al.
  • 1Department of Environmental Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502, Japan
  • 2Department of Biological Science, Graduate School of Science, Shizuoka University, 836 Oh-ya, Suruga-ku, Shizuoka 422-8529, Japan
  • 3Department of Environment Chemistry and Engineering, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502, Japan
  • 4Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu-city, Tokyo 183-8509, Japan
  • 5Earth-Life Science Institute, Tokyo Institute of Technology, Meguro, Tokyo, 152-8551, Japan
  • *present address: LSI Medience Corporation, 1000 Kamoshita-chou, Aoba-ku, Yokohama 227-0033, Japan

Abstract. Nitrous oxide (N2O) is a potent greenhouse gas and produced in denitrification and nitrification by various microorganisms. Site preference (SP) of 15N in N2O, which is defined as the difference in the natural abundance of isotopomers 14N15NO and 15N14NO relative to 14N14NO, has been reported to be a useful tool to quantitatively distinguish N2O production pathways. To determine representative SP values for each microbial process, we firstly measured SP of N2O produced in the enzyme reaction of hydroxylamine oxidoreductase (HAO) purified from two species of ammonia oxidizing bacteria (AOB), Nitrosomonas europaea and Nitrosococcus oceani, and that of nitric oxide reductase (NOR) from Paracoccus denitrificans. The SP value for NOR reaction (−5.9 ± 2.1‰) showed nearly the same value as that reported for N2O produced by P. denitrificans in pure culture. In contrast, SP value for HAO reaction (36.3 ± 2.3‰) was a little higher than the values reported for N2O produced by AOB in aerobic pure culture. Using the SP values obtained by HAO and NOR reactions, we calculated relative contribution of the nitrite (NO2) reduction (which is followed by NO reduction) to N2O production by N. oceani incubated under different O2 availability. Our calculations revealed that previous in vivo studies might have underestimated the SP value for the NH2OH oxidation pathway possibly due to a small contribution of NO2 reduction pathway. Further evaluation of isotopomer signatures of N2O using common enzymes of other processes related to N2O would improve the isotopomer analysis of N2O in various environments.

Final-revised paper