Articles | Volume 11, issue 10
Research article 21 May 2014
Research article | 21 May 2014
Isotopomeric characterization of nitrous oxide produced by reaction of enzymes extracted from nitrifying and denitrifying bacteria
T. Yamazaki et al.
No articles found.
Kun Wang, Shohei Hattori, Mang Lin, Sakiko Ishino, Becky Alexander, Kazuki Kamezaki, Naohiro Yoshida, and Shichang Kang
Atmos. Chem. Phys., 21, 8357–8376,Short summary
Sulfate aerosols play an important climatic role and exert adverse effects on the ecological environment and human health. In this study, we present the triple oxygen isotopic composition of sulfate from the Mt. Everest region, southern Tibetan Plateau, and decipher the formation mechanisms of atmospheric sulfate in this pristine environment. The results indicate the important role of the S(IV) + O3 pathway in atmospheric sulfate formation promoted by conditions of high cloud water pH.
Tamaki Fujinawa, Tomohiro O. Sato, Takayoshi Yamada, Seidai Nara, Yuki Uchiyama, Kodai Takahashi, Naohiro Yoshida, and Yasuko Kasai
Atmos. Meas. Tech., 13, 2119–2129,Short summary
We performed an error analysis of SMILES observations for acetonitrile and a validation using the MLS observations by extracting the coincident points between SMILES and MLS data. The major error sources for the SMILES observations were quantitatively estimated. At upper pressure levels the difference between the two datasets increased because of an uncertainty in MLS observations. The results showed that SMILES has an advantage in measuring acetonitrile in the upper stratosphere and mesosphere.
Kazuki Kamezaki, Shohei Hattori, Enno Bahlmann, and Naohiro Yoshida
Atmos. Meas. Tech., 12, 1141–1154,Short summary
Knowledge related to sulfur isotopic composition of carbonyl sulfide (OCS or COS), the most abundant atmospheric sulfur species, remains scarce. We present a new sampling system for collecting approx. 10 nmol of OCS from ambient air coupled with a purification system. The system presented herein is useful for application of sulfur isotopic compositions for investigation of OCS sources and sinks in the troposphere to elucidate its cycle and its contribution to background stratospheric sulfate.
Satoshi Sugawara, Shigeyuki Ishidoya, Shuji Aoki, Shinji Morimoto, Takakiyo Nakazawa, Sakae Toyoda, Yoichi Inai, Fumio Hasebe, Chusaku Ikeda, Hideyuki Honda, Daisuke Goto, and Fanny A. Putri
Atmos. Chem. Phys., 18, 1819–1833,Short summary
This is the first research that shows concrete evidence of gravitational separation in the tropical stratosphere. This implies that gravitational separation occurs within the entire stratosphere, which gives us new insight into atmospheric dynamics.
Sakae Toyoda, Naohiro Yoshida, Shinji Morimoto, Shuji Aoki, Takakiyo Nakazawa, Satoshi Sugawara, Shigeyuki Ishidoya, Mitsuo Uematsu, Yoichi Inai, Fumio Hasebe, Chusaku Ikeda, Hideyuki Honda, and Kentaro Ishijima
Atmos. Chem. Phys., 18, 833–844,Short summary
By analysis of whole air samples collected by balloon-borne compact cryogenic samplers, we found that apparent isotope effect for stratospheric N2O between 25 and 30 km over the Equator is larger than that observed in other latitudes and that it is almost equal to the effect predicted by laboratory simulation experiments. These results suggest that equatorial middle stratosphere can be treated as an isolated region when we consider the decomposition of N2O by photochemical processes.
Sakiko Ishino, Shohei Hattori, Joel Savarino, Bruno Jourdain, Susanne Preunkert, Michel Legrand, Nicolas Caillon, Albane Barbero, Kota Kuribayashi, and Naohiro Yoshida
Atmos. Chem. Phys., 17, 3713–3727,Short summary
We show the first simultaneous observations of triple oxygen isotopic compositions of atmospheric sulfate, nitrate, and ozone at Dumont d'Urville, coastal Antarctica. The contrasting seasonal trends between oxygen isotopes of ozone and those of sulfate and nitrate indicate that these signatures in sulfate and nitrate are mainly controlled by changes in oxidation chemistry. We also discuss the specific oxidation chemistry induced by the unique phenomena at the site.
Sakae Toyoda and Naohiro Yoshida
Atmos. Meas. Tech., 9, 2093–2101,Short summary
Tiny variation in natural abundance ratios of stable isotopes of nitrogen and oxygen in nitrous oxide (N2O) can be used as a fingerprint of this trace gas that causes greenhouse effect and stratospheric ozone depletion. Toward the understanding of the global budget of N2O and its temporal change, we developed an automated sample preparation system that can be used to measure the stable isotope ratios in N2O in various air samples collected into flasks with high precision and less labor.
Koki Maeda, Sakae Toyoda, Midori Yano, Shohei Hattori, Makoto Fukasawa, Keiichi Nakajima, and Naohiro Yoshida
Biogeosciences, 13, 1341–1349,Short summary
Nitrogen isotope ratios (δ15N) of NH4+ in dairy manure compost piles were studied. The δ15N–NH4+ values in different pile zones (top, side and core) show that extremely high nitrogen conversion, nitrification–denitrification activity of the microbes and NH3 volatilization occurred in pile top zone, which has very high NH4+ concentrations and significantly high 15N (δ15N: 12.7–29.8 ‰) values.
K. Ishijima, M. Takigawa, K. Sudo, S. Toyoda, N. Yoshida, T. Röckmann, J. Kaiser, S. Aoki, S. Morimoto, S. Sugawara, and T. Nakazawa
Atmos. Chem. Phys. Discuss.,
Revised manuscript not acceptedShort summary
We developed an atmospheric N2O isotopocule model based on a chemistry-coupled atmospheric general circulation model and a simple method to optimize the model, and estimated the isotopic signatures of surface sources at the hemispheric scale. Data obtained from ground-based observations, measurements of firn air, and balloon and aircraft flights were used to optimize the long-term trends, interhemispheric gradients, and photolytic fractionation, respectively, in the model.
N. Zhang, K. Yamada, N. Suzuki, and N. Yoshida
Biogeosciences, 11, 5335–5348,
T. O. Sato, H. Sagawa, N. Yoshida, and Y. Kasai
Atmos. Meas. Tech., 7, 941–958,
J. A. Schmidt, M. S. Johnson, S. Hattori, N. Yoshida, S. Nanbu, and R. Schinke
Atmos. Chem. Phys., 13, 1511–1520,
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Biogeosciences, 18, 3539–3564,Short summary
The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527,Short summary
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Biogeosciences, 18, 3421–3444,Short summary
We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
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Biogeosciences, 18, 2859–2870,Short summary
δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345,Short summary
The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Revised manuscript accepted for BGShort summary
We investigated how high Fe(II)-levels influence the O2 budget of a circumneutral Fe(II) rich spring and whether a combined study of dissolved O2 and its isotopic composition can help asses this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671,Short summary
The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Revised manuscript accepted for BGShort summary
Pacific Water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the Northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic Water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829,Short summary
In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490,Short summary
Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015,Short summary
The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653,Short summary
Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537,Short summary
We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375,Short summary
The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
Florian Einsiedl, Anja Wunderlich, Mathieu Sebilo, Ömer K. Coskun, William D. Orsi, and Bernhard Mayer
Biogeosciences, 17, 5149–5161,Short summary
Nitrate pollution of freshwaters and methane emissions into the atmosphere are crucial factors in deteriorating the quality of drinking water and in contributing to global climate change. Here, we report vertical concentration and stable isotope profiles of CH4, NO3-, NO2-, and NH4+ in the water column of Fohnsee (southern Bavaria, Germany) that may indicate linkages between nitrate-dependent anaerobic methane oxidation and the anaerobic oxidation of ammonium.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936,Short summary
Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Ralf A. Oeser and Friedhelm von Blanckenburg
Biogeosciences, 17, 4883–4917,Short summary
We present a novel strategy to decipher the relative impact of biogenic and abiotic drivers of weathering. We parameterized the nutrient fluxes in four ecosystems along a climate and vegetation gradient situated on the Chilean Coastal Cordillera. We investigated how nutrient demand by plants drives weathering. We found that the increase in biomass nutrient demand is accommodated by faster nutrient recycling rather than an increase in the weathering–release rates.
Tito Arosio, Malin M. Ziehmer, Kurt Nicolussi, Christian Schlüchter, and Markus Leuenberger
Biogeosciences, 17, 4871–4882,Short summary
Stable isotopes in tree-ring cellulose are tools for climatic reconstructions, but interpretation is challenging due to nonclimate trends. We analyzed the tree-age trends in tree-ring isotopes of deciduous larch and evergreen cembran pine. Samples covering the whole Holocene were collected at the tree line in the Alps. For cambial ages over 100 years, we prove the absence of age trends in δD, δ18O, and δ13C for both species. For lower cambial ages, trends differ for each isotope and species.
Yuyang He, Xiaobin Cao, and Huiming Bao
Biogeosciences, 17, 4785–4795,Short summary
Different carbon sites in a large organic molecule have different isotope compositions. Different carbon sites may not have the chance to exchange isotopes at all. The lack of appreciation of this notion might be blamed for an unsettled debate on the thermodynamic state of an organism. Here we demonstrate using minerals, N2O, and acetic acid that the dearth of exchange among different carbon sites renders them as independent as if they were different elements in organic molecules.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Giesemann, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Revised manuscript accepted for BGShort summary
This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Inhibitors confirmed the expected effect on N2O production only in one out of four experiments, but coincided with isotopic approaches in showing dominance of bacterial denitrification. We present a discussion on artefacts occurring with microbial inhibition to determine N2O fluxes.
Felix M. Spielmann, Albin Hammerle, Florian Kitz, Katharina Gerdel, and Georg Wohlfahrt
Biogeosciences, 17, 4281–4295,Short summary
Carbonyl sulfide (COS) can be used as a proxy for plant photosynthesis on an ecosystem scale. However, the relationships between COS and CO2 fluxes and their dependence on daily to seasonal changes in environmental drivers are still poorly understood. We examined COS and CO2 ecosystem fluxes above an agriculturally used mountain grassland for 6 months. Harvesting of the grassland disturbed the otherwise stable COS-to-CO2 uptake ratio. We even found the canopy to release COS during those times.
Getachew Agmuas Adnew, Thijs L. Pons, Gerbrand Koren, Wouter Peters, and Thomas Röckmann
Biogeosciences, 17, 3903–3922,Short summary
We measured the effect of photosynthesis, the largest flux in the carbon cycle, on the triple oxygen isotope composition of atmospheric CO2 at the leaf level during gas exchange using three plant species. The main factors that limit the impact of land vegetation on the triple oxygen isotope composition of atmospheric CO2 are identified, characterized and discussed. The effect of photosynthesis on the isotopic composition of CO2 is commonly quantified as discrimination (ΔA).
Moritz Schroll, Frank Keppler, Markus Greule, Christian Eckhardt, Holger Zorn, and Katharina Lenhart
Biogeosciences, 17, 3891–3901,Short summary
Fungi have recently been identified to produce the greenhouse gas methane. Here, we investigated the stable carbon isotope values of methane produced by saprotrophic fungi. Our results show that stable isotope values of methane from fungi are dependent on the fungal species and the metabolized substrate. They cover a broad range and overlap with stable carbon isotope values of methane reported for methanogenic archaea, the thermogenic degradation of organic matter, and other eukaryotes.
Pranav Hirave, Guido L. B. Wiesenberg, Axel Birkholz, and Christine Alewell
Biogeosciences, 17, 2169–2180,Short summary
Sediment input into water bodies is a prominent threat to freshwater ecosystems. We tested the stability of tracers employed in freshwater sediment tracing based on compound-specific isotope analysis during early degradation in soil. While bulk δ13C values showed no stability, δ13C values of plant-derived fatty acids and n-alkanes were stably transferred to the soil without soil particle size dependency after an early degradation in organic horizons, thus indicating their suitability as tracers.
Caroline Thaler, Amandine Katz, Magali Bonifacie, Bénédicte Ménez, and Magali Ader
Biogeosciences, 17, 1731–1744,Short summary
Paleoenvironment reconstructions, retrieved from δ18O and Δ47 values measured in carbonate, are compromised when crystallization occurs in isotopic disequilibrium. We show that some paleoenvironmental information can still be retrieved from these paired disequilibrium Δ47 and δ18O values. The possibility of retrieving information on paleowaters, sediments' interstitial waters, or organisms' body water at the carbonate precipitation loci will help understand past Earth and life evolution.
Guillaume Humbert, Mathieu Sébilo, Justine Fiat, Longqi Lang, Ahlem Filali, Véronique Vaury, Mathieu Spérandio, and Anniet M. Laverman
Biogeosciences, 17, 979–993,Short summary
Mitigating emissions of the greenhouse gas N2O requires understanding of the relative contribution of its producing processes in response to environmental variables. We show, using isotopic analysis, that N2O emissions from a nitrifying system were sensitive to oxygenation, temperature and NH4+ concentrations with nitrite reduction being the main N2O source. Temperature appears to be the main control on N2O production, due to its dissimilar effects on ammonium and nitrite oxidizing activities.
Oguz Yigiterhan, Ebrahim Mohd Al-Ansari, Alex Nelson, Mohamed Alaa Abdel-Moati, Jesse Turner, Hamood Abdulla Alsaadi, Barbara Paul, Ibrahim Abdullatif Al-Maslamani, Mehsin Abdulla Al-Ansi Al-Yafei, and James W. Murray
Biogeosciences, 17, 381–404,Short summary
We analyze net-tow samples of plankton and associated particulate matter from the Exclusive Economic Zone, Qatar, Arabian Gulf, using net tows with mesh sizes of 50 and 200 μm to examine the composition of plankton populations. We also focus on the role and composition of the atmospheric dust, representative of terrigenous material, deposited in the Gulf. We concluded that Al, Fe, Cr, Co, Mn, Ni, Pb, and Li are of dust origin and As, Cd, Cu, Mo, Zn, and Ca are of anthropogenic/biogenic origin.
Clare Woulds, James B. Bell, Adrian G. Glover, Steven Bouillon, and Louise S. Brown
Biogeosciences, 17, 1–12,Short summary
Sedimented hydrothermal vents occur where heated, mineral-rich (hydrothermal) water seeps through seafloor sediments. They host chemosynthetic microbes, which use chemical energy to fix dissolved carbon dioxide into sugars (chemosynthesis). We conducted carbon tracing experiments, and observed chemosynthesis at both vent and non-vent sites. Thus, chemosynthesis occurred over a much larger area than expected, suggesting it is more widespread than previously thought.
Cara C. Manning, Rachel H. R. Stanley, David P. Nicholson, Brice Loose, Ann Lovely, Peter Schlosser, and Bruce G. Hatcher
Biogeosciences, 16, 3351–3376,Short summary
We measured rates of biological activity and gas exchange in a Canadian estuary during ice melt. We quantified gas exchange using inert, deliberately released tracers and found that the gas transfer rate at > 90 % ice cover was 6 % of the rate for nearly ice-free conditions. We measured oxygen concentration and isotopic composition and used the data to detect changes in the rates of photosynthesis and respiration (autotrophy and heterotrophy) as the ice melted.
Marlène Lavrieux, Axel Birkholz, Katrin Meusburger, Guido L. B. Wiesenberg, Adrian Gilli, Christian Stamm, and Christine Alewell
Biogeosciences, 16, 2131–2146,Short summary
A fingerprinting approach using compound-specific stable isotopes was applied to a lake sediment core to reconstruct erosion processes over the past 150 years in a Swiss catchment. Even though the reconstruction of land use and eutrophication history was successful, the observation of comparatively low δ13C values of plant-derived fatty acids in the sediment suggests their alteration within the lake. Thus, their use as a tool for source attribution in sediment cores needs further investigation.
Luciana A. Pereira, Roberto V. Santos, Marília Hauser, Fabrice Duponchelle, Fernando Carvajal, Christophe Pecheyran, Sylvain Bérail, and Marc Pouilly
Biogeosciences, 16, 1781–1797,Short summary
This study presents the first step for a chemical origin certification of pirarucu fishery in the Amazon. A preliminary isotopic tool to improve the actual tracking system integrates ecological, social, and economic aspects of Amazon dynamics. The geographic origin validation of farmed and wild fishes contributes to environmental and social practices, secures food and income to communities, helps manage endangered species, reinforces aquaculture, and combats illegal fisheries.
Sarah Conrad, Johan Ingri, Johan Gelting, Fredrik Nordblad, Emma Engström, Ilia Rodushkin, Per S. Andersson, Don Porcelli, Örjan Gustafsson, Igor Semiletov, and Björn Öhlander
Biogeosciences, 16, 1305–1319,Short summary
Iron analysis of the particulate, colloidal, and truly dissolved fractions along the Lena River freshwater plume showed that the particulate iron dominates close to the coast. Over 99 % particulate and about 90 % colloidal iron were lost, while the truly dissolved phase was almost constant. Iron isotopes suggest that the shelf acts as a sink for particles and colloids with negative iron isotope values, while colloids with positive iron isotope values travel further out into the Arctic Ocean.
Elizabeth Verhoeven, Matti Barthel, Longfei Yu, Luisella Celi, Daniel Said-Pullicino, Steven Sleutel, Dominika Lewicka-Szczebak, Johan Six, and Charlotte Decock
Biogeosciences, 16, 383–408,Short summary
This study utilized state-of-the-art measurements of nitrogen isotopes to evaluate nitrogen cycling and to assess the biological sources of the potent greenhouse gas, N2O, in response to water-saving practices in rice systems. Water-saving practices did emit more N2O, and high N2O production had a lower 15N isotope signature. Modeling and visual interpretation indicate that these emissions mostly came from denitrification or nitrifier denitrification, controlled upstream by nitrification rates.
Feifei Deng, Gideon M. Henderson, Maxi Castrillejo, Fiz F. Perez, and Reiner Steinfeldt
Biogeosciences, 15, 7299–7313,Short summary
To better use Pa / Th to reconstruct deep water ventilation rate, we assessed controls on 230Th and 231Pa in the northern North Atlantic. With extended optimum multi-parameter analysis and CFC-based water-mass age, we found the imprint of young overflow water on Th and Pa and enhanced scavenging near the seafloor. A significantly higher advective loss of Pa to the south relative to Th in the Atlantic was estimated, supporting the use of Pa / Th for assessing basin-scale meridional transport.
Anne L. Morée, Jörg Schwinger, and Christoph Heinze
Biogeosciences, 15, 7205–7223,Short summary
Changes in the distribution of the carbon isotope 13C can be used to study the climate system if the governing processes (ocean circulation and biogeochemistry) are understood. We show the Southern Ocean importance for the global 13C distribution and that changes in 13C can be strongly influenced by biogeochemistry. Interpretation of 13C as a proxy for climate signals needs to take into account the effects of changes in biogeochemistry in addition to changes in ocean circulation.
Douglas G. Russell, Wei Wen Wong, and Perran L. M. Cook
Biogeosciences, 15, 7225–7234,Short summary
Nitrogen is an important nutrient in marine environments and is continually converted from one form to another. One way these processes can be investigated is by looking at the ratio of the 15N and 14N stable isotopes of different nitrogen-containing compounds. To date few studies have compared these ratios in seagrass beds, their associated sediments and the porewater NH4+ pool. The strong relationship between these nitrogen pools suggests that nitrogen is tightly recycled within seagrass beds.
Bharat Rastogi, Max Berkelhammer, Sonia Wharton, Mary E. Whelan, Frederick C. Meinzer, David Noone, and Christopher J. Still
Biogeosciences, 15, 7127–7139,Short summary
Carbonyl sulfide (OCS) has gained prominence as an independent tracer for gross primary productivity, which is usually modelled by partitioning net CO2 fluxes. Here, we present a simple empirical model for estimating ecosystem-scale OCS fluxes for a temperate old-growth forest and find that OCS sink strength scales with independently estimated CO2 uptake and is sensitive to the the fraction of downwelling diffuse light. We also examine the response of OCS and CO2 fluxes to sequential heat waves.
Fumiko Nakagawa, Urumu Tsunogai, Yusuke Obata, Kenta Ando, Naoyuki Yamashita, Tatsuyoshi Saito, Shigeki Uchiyama, Masayuki Morohashi, and Hiroyuki Sase
Biogeosciences, 15, 7025–7042,Short summary
To clarify the biological processing of nitrate within temperate forested catchments using unprocessed atmospheric nitrate exported from each catchment as a tracer, we continuously monitored stream nitrate concentrations and stable isotopic compositions in three forested catchments for more than 2 years. We concluded that the export flux of unprocessed atmospheric nitrate relative to the deposition flux in each forest ecosystem is applicable as an index for nitrogen saturation.
Lucie Cassarino, Christopher D. Coath, Joana R. Xavier, and Katharine R. Hendry
Biogeosciences, 15, 6959–6977,Short summary
Using a simple model, we show that the silicon isotopic composition of sponges can be used to estimate the silicic acid concentration of seawater, a key parameter linked to nutrient and carbon cycling. However, our data illustrate that skeletal type and growth rate also control silicon isotopic composition of sponges. Our study demonstrates the paleoceanographic utility of sponges as an archive for ocean silica content provided that suitable skeleton types are selected.
Laurie C. Hofmann and Svenja Heesch
Biogeosciences, 15, 6139–6149,Short summary
The ability of marine macroalgae to adapt to changing ocean chemistry will depend on the flexibility of their inorganic carbon uptake mechanisms across biogeographic ranges. Therefore, we investigated the plasticity of inorganic carbon uptake mechanisms in north Atlantic rhodoliths – free-living calcifying red algae that form important benthic habitats in coastal environments. We observed flexible mechanisms related to seawater DIC concentrations, indicating the potential for adaptation.
Jacqueline Bertlich, Dirk Nürnberg, Ed C. Hathorne, Lennart J. de Nooijer, Eveline M. Mezger, Markus Kienast, Steffanie Nordhausen, Gert-Jan Reichart, Joachim Schönfeld, and Jelle Bijma
Biogeosciences, 15, 5991–6018,
Jill N. Sutton, Gregory F. de Souza, Maribel I. García-Ibáñez, and Christina L. De La Rocha
Biogeosciences, 15, 5663–5676,Short summary
The silicon stable isotope distribution determined from samples collected from the North Atlantic Ocean indicates that water mass subduction and circulation are the dominant processes controlling the distribution of dissolved silicon in this region. In addition, these data provide a clear view of the direct interaction between northern and southern water masses and the extent to which the silicon isotope composition of these silica-poor waters is influenced by hydrography.
Maxi Castrillejo, Núria Casacuberta, Marcus Christl, Christof Vockenhuber, Hans-Arno Synal, Maribel I. García-Ibáñez, Pascale Lherminier, Géraldine Sarthou, Jordi Garcia-Orellana, and Pere Masqué
Biogeosciences, 15, 5545–5564,Short summary
The investigation of water mass transport pathways and timescales is important to understand the global ocean circulation. Following earlier studies, we use artificial radionuclides introduced to the oceans in the 1950s to investigate the water transport in the subpolar North Atlantic (SPNA). For the first time, we combine measurements of the long-lived iodine-129 and uranium-236 to confirm earlier findings/hypotheses and to better understand shallow and deep ventilation processes in the SPNA.
Gustaf Granath, Håkan Rydin, Jennifer L. Baltzer, Fia Bengtsson, Nicholas Boncek, Luca Bragazza, Zhao-Jun Bu, Simon J. M. Caporn, Ellen Dorrepaal, Olga Galanina, Mariusz Gałka, Anna Ganeva, David P. Gillikin, Irina Goia, Nadezhda Goncharova, Michal Hájek, Akira Haraguchi, Lorna I. Harris, Elyn Humphreys, Martin Jiroušek, Katarzyna Kajukało, Edgar Karofeld, Natalia G. Koronatova, Natalia P. Kosykh, Mariusz Lamentowicz, Elena Lapshina, Juul Limpens, Maiju Linkosalmi, Jin-Ze Ma, Marguerite Mauritz, Tariq M. Munir, Susan M. Natali, Rayna Natcheva, Maria Noskova, Richard J. Payne, Kyle Pilkington, Sean Robinson, Bjorn J. M. Robroek, Line Rochefort, David Singer, Hans K. Stenøien, Eeva-Stiina Tuittila, Kai Vellak, Anouk Verheyden, James Michael Waddington, and Steven K. Rice
Biogeosciences, 15, 5189–5202,Short summary
Peat constitutes a long-term archive for climate reconstruction by using the isotopic composition of carbon and oxygen. We analysed isotopes in two peat moss species across North America and Eurasia. Peat (moss tissue) isotope composition was predicted by soil moisture and isotopic composition of the rainwater but differed between species. Our results suggest that isotope composition can be used on a large scale for climatic reconstructions but that such models should be species-specific.
Joshua A. Haslun, Nathaniel E. Ostrom, Eric L. Hegg, and Peggy H. Ostrom
Biogeosciences, 15, 3873–3882,Short summary
N2O δ15N and δ18O values changed non-linearly during in vitro N2O production by bacterial denitrification of NO3−, an argument against their use in N2O apportionment. We present a novel approach for describing non-linear isotopic behaviour, which may be applied to other multi-step reactions. We also show that the intramolecular distribution of 15N in N2O, used to apportion N2O emissions to denitrification and nitrification, is unaffected by electron donor source and electron donor concentration.
Linas Balčiauskas, Raminta Skipitytė, Marius Jasiulionis, Laima Balčiauskienė, and Vidmantas Remeikis
Biogeosciences, 15, 3883–3891,Short summary
Effects of an expanding great cormorant colony on small mammals were evaluated. An increase of the number of bird pairs led to decreased δ13C and increased δ15N values in mice hair after the first year of nest appearance. Differences in isotopic signatures were related to species of rodents, pointing to the differences in their diet. Cormorant influence was indirect, the result of biological pollution from guano on rodent foods. Scaring cormorants from the colonies may have the opposite effect.
Wu Sun, Kadmiel Maseyk, Céline Lett, and Ulli Seibt
Biogeosciences, 15, 3277–3291,Short summary
Carbonyl sulfide (COS) is an emerging tracer to probe land photosynthesis at canopy to global scales, but the relationship between leaf COS and CO2 fluxes needed for this application is poorly quantified. With in situ leaf fluxes of COS and CO2 measured in a freshwater marsh, we show that light and vapor deficit control the relationship between leaf COS and CO2 fluxes by regulating stomatal conductance. Our findings support the use of COS as a tracer for canopy photosynthesis.
Anne Alexandre, Amarelle Landais, Christine Vallet-Coulomb, Clément Piel, Sébastien Devidal, Sandrine Pauchet, Corinne Sonzogni, Martine Couapel, Marine Pasturel, Pauline Cornuault, Jingming Xin, Jean-Charles Mazur, Frédéric Prié, Ilhem Bentaleb, Elizabeth Webb, Françoise Chalié, and Jacques Roy
Biogeosciences, 15, 3223–3241,Short summary
There is a lack of proxies suitable for reconstructing, in a quantitative way, past changes in continental atmospheric humidity, which is a key climate parameter. Here, we demonstrate through climate chamber and climate transect calibrations that the triple oxygen isotope composition of phytoliths offers a potential for reconstructing changes in relative humidity.
Philip M. Riekenberg, Joanne M. Oakes, and Bradley D. Eyre
Biogeosciences, 15, 2873–2889,Short summary
Shallow coastal waters are increasingly experiencing increased nutrient loading. Sediment algae within these systems are responsible for a large portion of C production, but we have limited knowledge of what happens to sediment microbial processing of MPB-C under increased nutrient conditions. This work examines how C-processing pathways change after increased short-term nutrient exposure, finding shifts in processing between microbial groups and increased export of algal C from the sediment.
Jill N. Sutton, Yi-Wei Liu, Justin B. Ries, Maxence Guillermic, Emmanuel Ponzevera, and Robert A. Eagle
Biogeosciences, 15, 1447–1467,Short summary
The boron isotope composition of marine biogenic carbonates has been studied as a proxy for monitoring past changes in seawater pH and carbonate chemistry. We highlight the potential utility of the boron isotope composition of marine biogenic carbonates as a proxy of calcifying site pH for a wide range of calcifying taxa and the importance of using species-specific seawater-pH–boron isotope calibrations when reconstructing seawater pH from the boron isotope composition of biogenic carbonates.
Arp, D. J. and Stein, L. Y.: Metabolism of inorganic N compounds by ammonia-oxidizing bacteria, Crit. Rev. Biochem. Mol. Biol., 38, 471–495, 2003.
Baggs, E. M.: A review of stable isotope techniques for N2O source partitioning in soils: recent progress, remaining challenges and future considerations, Rapid Commun. Mass. Sp., 22, 1664–1672, 2008.
Beaumont, H. J., Lens, S. I., Reijnders, W., Westerhoff, H. V., and van Spanning, R. J.: Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor, Mol. Microbiol., 54, 148–158, https://doi.org/10.1111/j.1365-2958.2004.04248.x, 2004.
Casciotti, K., Buchwald, C., Santoro, A. E., and Frame, C.: Assessment of nitrogen and oxygen isotopic fractionation during nitrification and itsexpression in the marine environment, Methods Enzymol., 486, 253–280, https://doi.org/10.1016/B978-0-12-381294-0.00011-0, 2011.
Frame, C. H. and Casciotti, K. L.: Biogeochemical controls and isotopic signatures of nitrous oxide production by a marine ammonia-oxidizing bacterium, Biogeosciences, 7, 2695–2709, https://doi.org/10.5194/bgd-7-3019-2010, 2010.
Fujiwara, T. and Fukumori, Y.: Cytochrome cb-type nitric oxide reductase with cytochrome c oxidase activity from Paracoccus denitrificans ATCC 35512, J. Bacteriol., 178, 1866–1871, 1996.
Goldberg, S. D., Borken, W., and Gebauer, G.: N2O emission in a Norway spruce forest due to soil frost: concentration and isotope profiles shed a new light on an old story, Biochem., 97, 21–30, https://doi.org/10.1007/s10533-009-9294-z, 2010.
Gundersen, K.: The growth and respiration of Nitrosocystis oceanus at different partial pressures of oxygen, J. Gen. Microbiol., 42, 387–396, 1966.
Hayatu, M., Tago, K., and Saito, M.: Various players in the nitrogen cycle; Diversity and functions of the microorganisms involved in nitrification and denitrification, Soil Sci. Plant Nutri., 54, 33-45, https://doi.org/10.1111/j.1747-0765.2007.00195.x, 2008.
Hino, T., Matsumoto, Y., Nagano, S., Sugimoto, H., Fukumori, Y., Murata, T., Iwata, S., and Shiro, Y.: Structural Basis of Biological N2O Generation by Bacterial Nitric Oxide Reductase, Science, 330, 1666, https://doi.org/10.1126/science.1195591, 2010.
Hendriks. J., Oubrie, A., Castresana, J., Urbani, A., Gemeinhardt, S., and Saraste, M.: Nitric oxide reductases in bacteria, Biochim. Biophys. Ac., 1459, 266–273, 2000.
Hozuki, T., Ohtsuka, T., Arai, K., Yoshimatsu, K., Tanaka, S., and Fujiwara, T.: Effect of salinity on hydroxylamine-oxidation in marine ammonia-oxidizing γ-proteobacterium, Nitrosococcus oceani: molecular and catalytic properties of tetraheme cytochrome c-554, Microbes Environ., 25, 95–102, https://doi.org/10.1264/jsme2.ME09154, 2010.
Igarashi, N., Moriyama, H., Fujiwara, T., Fukumori, Y., and Tanaka, N.: The 2.8 Å structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea, Nat. Struct. Biol., 4, 276–284, https://doi.org/10.1038/nsb0497-276, 1997.
Koba, K., Osaka, K., Tobari, Y., Toyoda, S., Ohte, N., Katsuyama, M., Suzuki, N., Itoh, M., Yamagishi, H., Kawasaki, M., Kim, S. J., Yoshida, N., and Nakajima, T.: Biogeochemistry of nitrous oxide in groundwater in a forested ecosystem elucidated by nitrous oxide isotopomer measurements, Geochim. Cosmochim. Ac., 73, 3115–3133, https://doi.org/10.1016/j.gca.2009.03.022, 2009.
Klotz, M. G., Arp, D. J., Chain, P. S. G., El-Sheikh, A. F., Hauser, L. J., Hommes, N. G., Larimer, F. W., Malfatti, S. A., Norton, J. M., Poret-Peterson, A. T., Vergez, L. M., and Ward, B. B.: Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707, Appl. Environ. Microbiol., 72, 6299–6315, https://doi.org/10.1128/AEM.00463-06, 2006.
Maalcke, W. J., Dietl, A., Marritt, S. J., Butt, J. N., Jetten, M. S. M., Keltjens, J. T., Barends, T. R. M., and Kartal, B.: Structural basis of biological NO generation by octaheme oxidoreductases, J. Biol. Chem., 289, 1228–1242, https://doi.org/10.1074/jbc.M113.525147, 2014.
Nicholas, D. J. D. and Mason, A.: Determination of nitrate and nitrite, Methods Enzymol., 3, 981–984, 1957.
Numata, M., Saito, T., Yamazaki,T., Fukumori, Y., and Yamanaka, T.: Cytochrome P-460 of Nitrosomonas europaea: further purification and further characterization., J. Biochem., 108, 1016–1023, 1990.
Park, S., Pérez, T., Boering, K. A., Trumbore, S. E., Gil, J., Marquina, S., and Tyler, S. C.: Can N2O stable isotopes and isotopomers be useful tools to characterize sources and microbial pathways of N2O production and consumption in tropical soils?, Global Biogeochem. Cy., 25, GB1001, https://doi.org/10.1029/2009GB003615, 2011.
Poth, M. and Focht, D.:15N kinetic analysis of N2O production by Nitrosomonas europaea: an examination of nitrifier denitrification, Appl. Environ. Microbiol., 49, 1134–1141, 1985.
Ravishankara, A. R., Daniel, J., and Sortman, R. W.: Nitrous oxide (N2O): The dominant ozone-depleting substance emitted in the 21st century, Science, 326, 123–125, https://doi.org/10.1126/science.1176985, 2009.
Santoro, A. E., Buchwald, C., McIlvin, M. R., and Casciotti, K. L.: Isotopic signature of N2O produced by marine ammonia-oxidizing archaea, Science, 333, 1282–1285, https://doi.org/10.1126/science.1208239, 2011.
Sasaki, Y., Koba, K., Yamamoto, M., Makabe, A., Ueno, Y., Nakagawa, M., Toyoda, S., Yoshida, N., and Yoh, M.: Biogeochemistry of nitrous oxide in Lake Kizaki, Japan, elucidated by nitrous oxide isotopomer analysis, J. Geophys. Res., 116, G04030, https://doi.org/10.1029/2010JG001589, 2011.
Seidell, A. and Linke, W. F.: Solubilities of inorganic and metal organic compounds, 4th Ed., American Chemical Society, Washington DC, 792 pp., 1965.
Stein, L. Y.: Heterotrophic nitrification and nitrifier denitrification, in: Nitrification, edited by: Ward, B. B., Klotz, M. G., and Arp, D. A., ASM Press, Washington DC, 95–114, 2011.
Stein, L. Y. and Yung, Y. L.: Production, Isotopic composition, and Atmospheric fate of biologically produced nitrous oxide, Annu. Rev. Earth Planet Sci., 31, 329–56, https://doi.org/10.1146/annurev.earth.31.110502.080901, 2003.
Sutka, R. L., Ostrom, N. E., Ostrom, P. H., Gandhi, H., and Breznak, J. A.: Nitrogen isotopomer site preference of N2O produced by Nitrosomonas europaea and Methylococcuscapsulatus Bath, Rapid Commun. Mass Sp., 17, 738–745, https://doi.org/10.1002/rcm.968, 2003.
Sutka, R. L., Ostrom, N. E., Ostrom, P. H., Gandhi, H., and Breznak, J. A.: Erratum Nitrogen isotopomer site preference of N2O produced by Nitrosomonas europaea and Methylococcuscapsulatus Bath, Rapid Commun. Mass Sp., 18, 1411–1412, https://doi.org/10.1002/rcm.1482, 2004.
Sutka, R. L., Ostrom, N. E., Ostrom, P. H., Breznak, J. A., Pitt, A. J., Li, F., and Gandhi, H.: Distinguishing Nitrous Oxide Production from Nitrification and Denitrification on the Basis of Isotopomer Abundances, Appl. Environ. Microbiol., 638–644, https://doi.org/10.1128/AEM.72.1.638-644.2006, 2006.
Sutka, R. L., Adams, G. C., Ostrom, N. E., and Ostrom, P. E.: Isotopologue fractionation during N2O production by fungal denitrification, Rapid Commun. Mass Sp., 22, 3986–3996, https://doi.org/10.1002/rcm.3820, 2008.
Takenaka, T., Tashiro, T., Ozaki, A., Takakubo, H., Yamamoto, Y., Maruyama, T., Nagaosa, K., Kimura, H., and Kato, K.: Planktonic bacterial population dynamics with environmental changes in coastal areas of Suruga Bay, Microbes Environ., 22, 257–267, https://doi.org/10.1264/jsme2.22.257, 2007.
Terry, K. R. and Hooper, A. B.: Hydroxylamine oxidoreductase: a 20-heme, 200,000 molecular weight cytochrome c with unusual denaturation properties which forms a 63,000 molecular weight monomer after heme removal, Biochem., 20, 7026–7032, https://doi.org/10.1021/bi00527a039, 1981.
Toyoda, S. and Yoshida, N.: Determination of nitrogen isotopomers of nitrous oxide on a modified isotope ratio mass spectrometer, Anal. Chem., 71, 4711–4718, https://doi.org/10.1021/ac9904563, 1999.
Toyoda, S., Yoshida, N., Miwa, T., Matsui, Y, Yamagishi, H., and Tsunogai, U.: Production mechanism and global budget of N2O inferred from its isotopomers in the western North Pacific, Geophys. Res. Lett., 29, https://doi.org/10.1029/2001GL014311, 2002.
Toyoda, S., Mutobe, H., Yamagishi, H., Yoshida, N., and Tanji, Y.: Fractionation of N2O isotopomers during production by denitrifier, Soil. Biol. Biochem., 37, 1535–1545, https://doi.org/10.1016/j.soilbio.2005.01.009, 2005.
Toyoda, S., Suzuki, Y., Hattori, S., Yamada, K., Fujii, A., Yoshida, N., Kouno, R., Murayama, K., and Shiomi, H.: Isotopomer analysis of production and consumption mechanisms of N2O and CH4 in an advanced wastewater treatment system, Environ. Sci. Technol., 45, 917–922, https://doi.org/10.1021/es102985u, 2011.
Watmough, N. J., Field, S. J., Hughes, R. J. L., and Richardson, D. J.: The bacterial respiratory nitric oxide reductase, Biochem. Soc. T., 37, 392–399, https://doi.org/10.1042/BST0370392, 2009.
Well, R., Flessa, H., Xing, L., Xiaotang, J., and Romheld, V.: Isotopologue ratios of N2O emitted from microcosms with NH4+ fertilized arable soils under conditions favoring nitrification, Soil Biol. Biochem., 40, 2416–2426, https://doi.org/10.1016/j.soilbio.2008.06.003, 2008.
Wrage, N., Velthof, G. L., van Beusichema, M. L., and Oenema, O.: Role of nitrifier denitrification in the production of nitrous oxide, Soil Biol. Biochem., 33, 1723–1732, 2001.
Yamanaka, T. and Sakano, Y.: Oxidation of hydroxylamine to nitrite catalyzed by hydroxylamine oxidoreductase purified from Nitrosomonas europaea, Curr. Microbiol., 4, 239–244, 1980.
Yamanaka, T. and Shinra, M.: Cytochrome c-552 and cytochrome c-554 derived from Nitrosomonas europaea. Purification, properties, and their function in hydroxylamine oxidation, J. Biochem., 75, 1265–1273, 1974.
Yamanaka, T., Shinra, M., Takahashi, K., and Shibasaka, M.: Highly purified hydroxylamine oxidoreductase from Nitrosomonas europaea: some physicochemical and enzymatic properties, J. Biochem., 86, 1101–1108, 1979.
Yoshida, N.: 15N depleted N2O as a product of nitrification, Nature, 335, 528–529, 1988.
Yoshida, N. and Toyoda, S.: Constraining the atmospheric N2O budget from intramolecular site preference in N2O isotopomers, Nature, 405, 330–334, https://doi.org/10.1038/35012558, 2000.
Zumft, W. G.: Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme–copper oxidase type, J. Inorg. Biochem., 99, 194–215, https://doi.org/10.1016/j.jinorgbio.2004.09.024, 2005.