Articles | Volume 12, issue 5
https://doi.org/10.5194/bg-12-1483-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-1483-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Comparison of ten packages that compute ocean carbonate chemistry
LSCE/IPSL, Laboratoire des Sciences du Climat et de l'Environnement, CEA-CNRS-UVSQ, Gif-sur-Yvette, France
J.-M. Epitalon
Geoscientific Programming Services, Fanjeaux, France
J.-P. Gattuso
CNRS-INSU, Laboratoire d'Océanographie de Villefrance, Villefranche-sur-mer, France
Sorbonne Universités, UPMC Univ. Paris 06, Observatoire Océanologique, Villefranche-sur-mer, France
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63 citations as recorded by crossref.
- Carbonate chemistry in sediment porewaters of the Rhône River delta driven by early diagenesis (northwestern Mediterranean) J. Rassmann et al. 10.5194/bg-13-5379-2016
- Effect of altered nitrogen partial pressure on Chlorellaceae for spaceflight applications T. Niederwieser et al. 10.1016/j.algal.2019.101543
- Data compilation on the biological response to ocean acidification: an update Y. Yang et al. 10.5194/essd-8-79-2016
- OceanSODA-ETHZ: a global gridded data set of the surface ocean carbonate system for seasonal to decadal studies of ocean acidification L. Gregor & N. Gruber 10.5194/essd-13-777-2021
- Using present-day observations to detect when anthropogenic change forces surface ocean carbonate chemistry outside preindustrial bounds A. Sutton et al. 10.5194/bg-13-5065-2016
- Carbonate chemistry variability in the southern Yellow Sea and East China Sea during spring of 2017 and summer of 2018 X. Deng et al. 10.1016/j.scitotenv.2021.146376
- Calcium distribution in the subtropical Atlantic Ocean: Implications for calcium excess and saturation horizons G. Rosón et al. 10.1016/j.jmarsys.2016.01.011
- Dynamics of benthic metabolism, O 2 , and pCO 2 in a temperate seagrass meadow P. Berg et al. 10.1002/lno.11236
- Temporal dynamics of surface ocean carbonate chemistry in response to natural and simulated upwelling events during the 2017 coastal El Niño near Callao, Peru S. Chen et al. 10.5194/bg-19-295-2022
- Nonuniform ocean acidification and attenuation of the ocean carbon sink A. Fassbender et al. 10.1002/2017GL074389
- The Bern Simple Climate Model (BernSCM) v1.0: an extensible and fully documented open-source re-implementation of the Bern reduced-form model for global carbon cycle–climate simulations K. Strassmann & F. Joos 10.5194/gmd-11-1887-2018
- Toward a Quality-Controlled and Accessible Pitzer Model for Seawater and Related Systems D. Turner et al. 10.3389/fmars.2016.00139
- Comparing Subsurface Seasonal Deoxygenation and Acidification in the Yellow Sea and Northern East China Sea Along the North-to-South Latitude Gradient T. Xiong et al. 10.3389/fmars.2020.00686
- Variability in the benefits of ocean acidification to photosynthetic rates of macroalgae without CO2-concentrating mechanisms C. Cornwall & C. Hurd 10.1071/MF19134
- Evaluation of the temperature dependence of dissociation constants for the marine carbon system using pH and certified reference materials R. Woosley 10.1016/j.marchem.2020.103914
- Seasonal and spatial variability in surface p CO 2 and air–water CO 2 flux in the Chesapeake Bay B. Chen et al. 10.1002/lno.11573
- SolveSAPHE-r2 (v2.0.1): revisiting and extending the Solver Suite for Alkalinity-PH Equations for usage with CO<sub>2</sub>, HCO<sub>3</sub><sup>−</sup> or CO<sub>3</sub><sup>2−</sup> input data G. Munhoven 10.5194/gmd-14-4225-2021
- CMIP6 Simulations With the CMCC Earth System Model (CMCC‐ESM2) T. Lovato et al. 10.1029/2021MS002814
- Technical note: Interpreting pH changes A. Fassbender et al. 10.5194/bg-18-1407-2021
- Deducing acidification rates based on short-term time series H. Lui & C. Arthur Chen 10.1038/srep11517
- Processes of multibathyal aragonite undersaturation in the Arctic Ocean J. Wynn et al. 10.1002/2016JC011696
- Pacific Anthropogenic Carbon Between 1991 and 2017 B. Carter et al. 10.1029/2018GB006154
- Planktic foraminifer and coccolith contribution to carbonate export fluxes over the central Kerguelen Plateau M. Rembauville et al. 10.1016/j.dsr.2016.02.017
- Ocean carbonate system computation for anoxic waters using an updated CO2SYS program Y. Xu et al. 10.1016/j.marchem.2017.07.002
- Spatial variability in surface-water <i>p</i>CO<sub>2</sub> and gas exchange in the world's largest semi-enclosed estuarine system: St. Lawrence Estuary (Canada) A. Dinauer & A. Mucci 10.5194/bg-14-3221-2017
- Biogeochemical protocols and diagnostics for the CMIP6 Ocean Model Intercomparison Project (OMIP) J. Orr et al. 10.5194/gmd-10-2169-2017
- Early Diagenesis in the Hypoxic and Acidified Zone of the Northern Gulf of Mexico: Is Organic Matter Recycling in Sediments Disconnected From the Water Column? C. Rabouille et al. 10.3389/fmars.2021.604330
- Equipping smart coasts with marine water quality IoT sensors P. Bresnahan et al. 10.1016/j.rineng.2019.100087
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- Structure and functioning of the acid–base system in the Baltic Sea K. Kuliński et al. 10.5194/esd-8-1107-2017
- Emergence of Summertime Hypoxia and Concurrent Carbonate Mineral Suppression in the Central Bohai Sea, China W. Zhai et al. 10.1029/2019JG005120
- Deep oceans may acidify faster than anticipated due to global warming C. Chen et al. 10.1038/s41558-017-0003-y
- Simulating and Quantifying Multiple Natural Subsea CO2 Seeps at Panarea Island (Aeolian Islands, Italy) as a Proxy for Potential Leakage from Subseabed Carbon Storage Sites J. Gros et al. 10.1021/acs.est.9b02131
- Seasonal Changes in Carbonate Saturation State and Air‐Sea CO 2 Fluxes During an Annual Cycle in a Stratified‐Temperate Fjord (Reloncaví Fjord, Chilean Patagonia) M. Vergara‐Jara et al. 10.1029/2019JG005028
- Long‐Term Changes of Carbonate Chemistry Variables Along the North American East Coast Y. Xu et al. 10.1029/2019JC015982
- Carbon exchange between a shelf sea and the ocean: The Hebrides Shelf, west of Scotland S. Painter et al. 10.1002/2015JC011599
- Seasonal variation in aragonite saturation in surface waters of Puget Sound – a pilot study G. Pelletier et al. 10.1525/elementa.270
- Calcite dissolution kinetics at the sediment-water interface in natural seawater O. Sulpis et al. 10.1016/j.marchem.2017.06.005
- Inclusion of uncertainty in the calcium-salinity relationship improves estimates of ocean acidification monitoring data quality W. Dillon et al. 10.1016/j.marchem.2020.103872
- Distribution and long-term change of the sea surface carbonate system in the Mozambique Channel (1963–2019) C. Lo Monaco et al. 10.1016/j.dsr2.2021.104936
- Technical note: CO<sub>2</sub> is not like CH<sub>4</sub> – limits of and corrections to the headspace method to analyse <i>p</i>CO<sub>2</sub> in fresh water M. Koschorreck et al. 10.5194/bg-18-1619-2021
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- Effect of temperature rise and ocean acidification on growth of calcifying tubeworm shells (<i>Spirorbis spirorbis</i>): an in situ benthocosm approach S. Ni et al. 10.5194/bg-15-1425-2018
- Seasonal carbonate chemistry variability in marine surface waters of the US Pacific Northwest A. Fassbender et al. 10.5194/essd-10-1367-2018
- The diurnal cycle of <i>p</i>CO<sub>2</sub> in the coastal region of the Baltic Sea M. Honkanen et al. 10.5194/os-17-1657-2021
- Improved routines to model the ocean carbonate system: mocsy 2.0 J. Orr & J. Epitalon 10.5194/gmd-8-485-2015
- Contrasting Controls of Acidification Metrics Across Environmental Gradients in the North Pacific and the Adjunct Arctic Ocean: Insight From a Transregional Study Y. Wu et al. 10.1029/2021GL094473
- Routine uncertainty propagation for the marine carbon dioxide system J. Orr et al. 10.1016/j.marchem.2018.10.006
- Characterizing Mean and Extreme Diurnal Variability of Ocean CO 2 System Variables Across Marine Environments O. Torres et al. 10.1029/2020GL090228
- Decalcification and survival of benthic foraminifera under the combined impacts of varying pH and salinity L. Charrieau et al. 10.1016/j.marenvres.2018.03.015
- The internal consistency of the marine carbon dioxide system for high latitude shipboard and in situ monitoring L. Raimondi et al. 10.1016/j.marchem.2019.03.001
- PyCO2SYS v1.8: marine carbonate system calculations in Python M. Humphreys et al. 10.5194/gmd-15-15-2022
- Measuring pH variability using an experimental sensor on an underwater glider M. Hemming et al. 10.5194/os-13-427-2017
- Ocean acidification studies and the uncertainties relevance on measurements of marine carbonate system properties A. Perretti et al. 10.1590/s1679-87592018000706602
- Best Practice Data Standards for Discrete Chemical Oceanographic Observations L. Jiang et al. 10.3389/fmars.2021.705638
- Reconciliation of pH25 and pHinsitu acidification rates of the surface oceans: A simple conversion using only in situ temperature H. Lui & C. Chen 10.1002/lom3.10170
- Seasonal Asymmetry in the Evolution of Surface Ocean p CO 2 and pH Thermodynamic Drivers and the Influence on Sea‐Air CO 2 Flux A. Fassbender et al. 10.1029/2017GB005855
- Cardinal Buoys: An Opportunity for the Study of Air-Sea CO2 Fluxes in Coastal Ecosystems J. Gac et al. 10.3389/fmars.2020.00712
- A Review of National Monitoring Requirements to Support Offshore Carbon Capture and Storage W. Turrell et al. 10.3389/fmars.2022.838309
- Apparent increase in coccolithophore abundance in the subtropical North Atlantic from 1990 to 2014 K. Krumhardt et al. 10.5194/bg-13-1163-2016
- Rapid Acidification of the Arctic Chukchi Sea Waters Driven by Anthropogenic Forcing and Biological Carbon Recycling D. Qi et al. 10.1029/2021GL097246
- Comment on “ Scrutinizing the carbon cycle and CO 2 residence time in the atmosphere ” by H. Harde P. Köhler et al. 10.1016/j.gloplacha.2017.09.015
- Short-term response of flat tree oyster, Isognomon alatus to CO2 acidified seawater in laboratory and field experiments G. Lailah et al. 10.5897/AJEST2020.2897
4 citations as recorded by crossref.
- Effect of Inorganic and Organic Carbon Enrichments (DIC and DOC) on the Photosynthesis and Calcification Rates of Two Calcifying Green Algae from a Caribbean Reef Lagoon F. Meyer et al. 10.1371/journal.pone.0160268
- Effects of ocean acidification on Antarctic marine organisms: A meta‐analysis A. Hancock et al. 10.1002/ece3.6205
- Improved routines to model the ocean carbonate system: mocsy 2.0 J. Orr & J. Epitalon 10.5194/gmd-8-485-2015
- Comparison of ten packages that compute ocean carbonate chemistry J. Orr et al. 10.5194/bg-12-1483-2015
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Discussed (final revised paper)
Latest update: 26 Mar 2023
Short summary
Basic marine carbonate system variables such as pH are often computed from others. Such calculations are made with many public software packages, but their results have never been compared. A new study compares 10 of these packages, quantifying differences, isolating causes, and making recommendations to reduce future discrepancies. This comparison effort has led to more than a 10-fold reduction in differences between packages for some computed variables.
Basic marine carbonate system variables such as pH are often computed from others. Such...
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