Articles | Volume 12, issue 5
https://doi.org/10.5194/bg-12-1483-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-1483-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
09 Mar 2015
Research article |
| 09 Mar 2015
Comparison of ten packages that compute ocean carbonate chemistry
LSCE/IPSL, Laboratoire des Sciences du Climat et de l'Environnement, CEA-CNRS-UVSQ, Gif-sur-Yvette, France
J.-M. Epitalon
Geoscientific Programming Services, Fanjeaux, France
J.-P. Gattuso
CNRS-INSU, Laboratoire d'Océanographie de Villefrance, Villefranche-sur-mer, France
Sorbonne Universités, UPMC Univ. Paris 06, Observatoire Océanologique, Villefranche-sur-mer, France
Related authors
Andrea J. Fassbender, James C. Orr, and Andrew G. Dickson
Biogeosciences, 18, 1407–1415, https://doi.org/10.5194/bg-18-1407-2021, https://doi.org/10.5194/bg-18-1407-2021, 2021
Short summary
Short summary
A decline in upper-ocean pH with time is typically ascribed to ocean acidification. A more quantitative interpretation is often confused by failing to recognize the implications of pH being a logarithmic transform of hydrogen ion concentration rather than an absolute measure. This can lead to an unwitting misinterpretation of pH data. We provide three real-world examples illustrating this and recommend the reporting of both hydrogen ion concentration and pH in studies of ocean chemical change.
Lester Kwiatkowski, Olivier Torres, Laurent Bopp, Olivier Aumont, Matthew Chamberlain, James R. Christian, John P. Dunne, Marion Gehlen, Tatiana Ilyina, Jasmin G. John, Andrew Lenton, Hongmei Li, Nicole S. Lovenduski, James C. Orr, Julien Palmieri, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Charles A. Stock, Alessandro Tagliabue, Yohei Takano, Jerry Tjiputra, Katsuya Toyama, Hiroyuki Tsujino, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, and Tilo Ziehn
Biogeosciences, 17, 3439–3470, https://doi.org/10.5194/bg-17-3439-2020, https://doi.org/10.5194/bg-17-3439-2020, 2020
Short summary
Short summary
We assess 21st century projections of marine biogeochemistry in the CMIP6 Earth system models. These models represent the most up-to-date understanding of climate change. The models generally project greater surface ocean warming, acidification, subsurface deoxygenation, and euphotic nitrate reductions but lesser primary production declines than the previous generation of models. This has major implications for the impact of anthropogenic climate change on marine ecosystems.
Jens Terhaar, James C. Orr, Marion Gehlen, Christian Ethé, and Laurent Bopp
Biogeosciences, 16, 2343–2367, https://doi.org/10.5194/bg-16-2343-2019, https://doi.org/10.5194/bg-16-2343-2019, 2019
Short summary
Short summary
A budget of anthropogenic carbon in the Arctic Ocean, the main driver of open-ocean acidification, was constructed for the first time using a high-resolution ocean model. The budget reveals that anthropogenic carbon enters the Arctic Ocean mainly by lateral transport; the air–sea flux plays a minor role. Coarser-resolution versions of the same model, typical of earth system models, store less anthropogenic carbon in the Arctic Ocean and thus underestimate ocean acidification in the Arctic Ocean.
Camille Richon, Jean-Claude Dutay, Laurent Bopp, Briac Le Vu, James C. Orr, Samuel Somot, and François Dulac
Biogeosciences, 16, 135–165, https://doi.org/10.5194/bg-16-135-2019, https://doi.org/10.5194/bg-16-135-2019, 2019
Short summary
Short summary
We evaluate the effects of climate change and biogeochemical forcing evolution on the nutrient and plankton cycles of the Mediterranean Sea for the first time. We use a high-resolution coupled physical and biogeochemical model and perform 120-year transient simulations. The results indicate that changes in external nutrient fluxes and climate change may have synergistic or antagonistic effects on nutrient concentrations, depending on the region and the scenario.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
Short summary
Short summary
The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Stephen M. Griffies, Gokhan Danabasoglu, Paul J. Durack, Alistair J. Adcroft, V. Balaji, Claus W. Böning, Eric P. Chassignet, Enrique Curchitser, Julie Deshayes, Helge Drange, Baylor Fox-Kemper, Peter J. Gleckler, Jonathan M. Gregory, Helmuth Haak, Robert W. Hallberg, Patrick Heimbach, Helene T. Hewitt, David M. Holland, Tatiana Ilyina, Johann H. Jungclaus, Yoshiki Komuro, John P. Krasting, William G. Large, Simon J. Marsland, Simona Masina, Trevor J. McDougall, A. J. George Nurser, James C. Orr, Anna Pirani, Fangli Qiao, Ronald J. Stouffer, Karl E. Taylor, Anne Marie Treguier, Hiroyuki Tsujino, Petteri Uotila, Maria Valdivieso, Qiang Wang, Michael Winton, and Stephen G. Yeager
Geosci. Model Dev., 9, 3231–3296, https://doi.org/10.5194/gmd-9-3231-2016, https://doi.org/10.5194/gmd-9-3231-2016, 2016
Short summary
Short summary
The Ocean Model Intercomparison Project (OMIP) aims to provide a framework for evaluating, understanding, and improving the ocean and sea-ice components of global climate and earth system models contributing to the Coupled Model Intercomparison Project Phase 6 (CMIP6). This document defines OMIP and details a protocol both for simulating global ocean/sea-ice models and for analysing their output.
Timothée Bourgeois, James C. Orr, Laure Resplandy, Jens Terhaar, Christian Ethé, Marion Gehlen, and Laurent Bopp
Biogeosciences, 13, 4167–4185, https://doi.org/10.5194/bg-13-4167-2016, https://doi.org/10.5194/bg-13-4167-2016, 2016
Short summary
Short summary
The global coastal ocean took up 0.1 Pg C yr−1 of anthropogenic carbon during 1993–2012 based on new biogeochemical simulations with an eddying 3-D global model. That is about half of the most recent estimate, an extrapolation based on surface areas. It should not be confused with the continental shelf pump, perhaps 10 times larger, which includes natural as well as anthropogenic carbon. Coastal uptake of anthropogenic carbon is limited by its offshore transport.
Roland Séférian, Marion Gehlen, Laurent Bopp, Laure Resplandy, James C. Orr, Olivier Marti, John P. Dunne, James R. Christian, Scott C. Doney, Tatiana Ilyina, Keith Lindsay, Paul R. Halloran, Christoph Heinze, Joachim Segschneider, Jerry Tjiputra, Olivier Aumont, and Anastasia Romanou
Geosci. Model Dev., 9, 1827–1851, https://doi.org/10.5194/gmd-9-1827-2016, https://doi.org/10.5194/gmd-9-1827-2016, 2016
Short summary
Short summary
This paper explores how the large diversity in spin-up protocols used for ocean biogeochemistry in CMIP5 models contributed to inter-model differences in modeled fields. We show that a link between spin-up duration and skill-score metrics emerges from both individual IPSL-CM5A-LR's results and an ensemble of CMIP5 models. Our study suggests that differences in spin-up protocols constitute a source of inter-model uncertainty which would require more attention in future intercomparison exercises.
J. C. Orr and J.-M. Epitalon
Geosci. Model Dev., 8, 485–499, https://doi.org/10.5194/gmd-8-485-2015, https://doi.org/10.5194/gmd-8-485-2015, 2015
Short summary
Short summary
We provide improved routines to model the ocean carbonate system, i.e., to compute ocean pH and related variables from dissolved inorganic carbon and total alkalinity. These routines (1) rely on the fastest available algorithm to solve the alkalinity-pH equation, which converges even under extreme conditions; (2) avoid common model approximations that lead to errors of 3% or more in computed variables; and (3) account for large pressure effects on subsurface pCO2, unlike other packages.
J. Palmiéri, J. C. Orr, J.-C. Dutay, K. Béranger, A. Schneider, J. Beuvier, and S. Somot
Biogeosciences, 12, 781–802, https://doi.org/10.5194/bg-12-781-2015, https://doi.org/10.5194/bg-12-781-2015, 2015
Short summary
Short summary
Different observational-based estimates of CO2 uptake and resulting
acidification of the Mediterranean Sea vary widely. A new study finds
that even the smallest of those are an upper limit because the approach
used assumes air-sea CO2 equilibrium. Then with a lower limit from new
fine-scale numerical model simulations, the authors bracket
Mediterranean Sea CO2 uptake and acidification rates. They conclude that
its rate of surface acidifcation is much like that for typical ocean
waters.
M. Gehlen, R. Séférian, D. O. B. Jones, T. Roy, R. Roth, J. Barry, L. Bopp, S. C. Doney, J. P. Dunne, C. Heinze, F. Joos, J. C. Orr, L. Resplandy, J. Segschneider, and J. Tjiputra
Biogeosciences, 11, 6955–6967, https://doi.org/10.5194/bg-11-6955-2014, https://doi.org/10.5194/bg-11-6955-2014, 2014
Short summary
Short summary
This study evaluates potential impacts of pH reductions on North Atlantic deep-sea ecosystems in response to latest IPCC scenarios.Multi-model projections of pH changes over the seafloor are analysed with reference to a critical threshold based on palaeo-oceanographic studies, contemporary observations and model results. By 2100 under the most severe IPCC CO2 scenario, pH reductions occur over ~23% of deep-sea canyons and ~8% of seamounts – including seamounts proposed as marine protected areas.
L. Bopp, L. Resplandy, J. C. Orr, S. C. Doney, J. P. Dunne, M. Gehlen, P. Halloran, C. Heinze, T. Ilyina, R. Séférian, J. Tjiputra, and M. Vichi
Biogeosciences, 10, 6225–6245, https://doi.org/10.5194/bg-10-6225-2013, https://doi.org/10.5194/bg-10-6225-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
Nicolas Metzl, Jonathan Fin, Claire Lo Monaco, Claude Mignon, Samir Alliouane, Bruno Bombled, Jacqueline Boutin, Yann Bozec, Steeve Comeau, Pascal Conan, Laurent Coppola, Pascale Cuet, Eva Ferreira, Jean-Pierre Gattuso, Frédéric Gazeau, Catherine Goyet, Emilie Grossteffan, Bruno Lansard, Dominique Lefèvre, Nathalie Lefèvre, Coraline Leseurre, Sébastien Petton, Mireille Pujo-Pay, Christophe Rabouille, Gilles Reverdin, Céline Ridame, Peggy Rimmelin-Maury, Jean-François Ternon, Franck Touratier, Aline Tribollet, Thibaut Wagener, and Cathy Wimart-Rousseau
Earth Syst. Sci. Data, 17, 1075–1100, https://doi.org/10.5194/essd-17-1075-2025, https://doi.org/10.5194/essd-17-1075-2025, 2025
Short summary
Short summary
This work presents a new synthesis of 67 000 total alkalinity and total dissolved inorganic carbon observations obtained between 1993 and 2023 in the global ocean, coastal zones, and the Mediterranean Sea. We describe the data assemblage and associated quality control and discuss some potential uses of this dataset. The dataset is provided in a single format and includes the quality flag for each sample.
Anaïs Lebrun, Cale A. Miller, Marc Meynadier, Steeve Comeau, Pierre Urrutti, Samir Alliouane, Robert Schlegel, Jean-Pierre Gattuso, and Frédéric Gazeau
Biogeosciences, 21, 4605–4620, https://doi.org/10.5194/bg-21-4605-2024, https://doi.org/10.5194/bg-21-4605-2024, 2024
Short summary
Short summary
We tested the effects of warming, low salinity, and low irradiance on Arctic kelps. We show that growth rates were similar across species and treatments. Alaria esculenta is adapted to low-light conditions. Saccharina latissima exhibited nitrogen limitation, suggesting coastal erosion and permafrost thawing could be beneficial. Laminaria digitata did not respond to the treatments. Gene expression of Hedophyllum nigripes and S. latissima indicated acclimation to the experimental treatments.
Robert W. Schlegel, Rakesh Kumar Singh, Bernard Gentili, Simon Bélanger, Laura Castro de la Guardia, Dorte Krause-Jensen, Cale A. Miller, Mikael Sejr, and Jean-Pierre Gattuso
Earth Syst. Sci. Data, 16, 2773–2788, https://doi.org/10.5194/essd-16-2773-2024, https://doi.org/10.5194/essd-16-2773-2024, 2024
Short summary
Short summary
Fjords play a vital role in the Arctic ecosystems and human communities. It is therefore important to have as clear of an understanding of the processes within these systems as possible. While temperature and salinity tend to be well measured, light is usually not. The dataset described in this paper uses remotely sensed data from 2003 to 2022 to address this problem by providing high-spatial-resolution surface, water column, and seafloor light data for several well-studied Arctic fjords.
Sébastien Petton, Fabrice Pernet, Valérian Le Roy, Matthias Huber, Sophie Martin, Éric Macé, Yann Bozec, Stéphane Loisel, Peggy Rimmelin-Maury, Émilie Grossteffan, Michel Repecaud, Loïc Quemener, Michael Retho, Soazig Manac'h, Mathias Papin, Philippe Pineau, Thomas Lacoue-Labarthe, Jonathan Deborde, Louis Costes, Pierre Polsenaere, Loïc Rigouin, Jérémy Benhamou, Laure Gouriou, Joséphine Lequeux, Nathalie Labourdette, Nicolas Savoye, Grégory Messiaen, Elodie Foucault, Vincent Ouisse, Marion Richard, Franck Lagarde, Florian Voron, Valentin Kempf, Sébastien Mas, Léa Giannecchini, Francesca Vidussi, Behzad Mostajir, Yann Leredde, Samir Alliouane, Jean-Pierre Gattuso, and Frédéric Gazeau
Earth Syst. Sci. Data, 16, 1667–1688, https://doi.org/10.5194/essd-16-1667-2024, https://doi.org/10.5194/essd-16-1667-2024, 2024
Short summary
Short summary
Our research highlights the concerning impact of rising carbon dioxide levels on coastal areas. To better understand these changes, we've established an observation network in France. By deploying pH sensors and other monitoring equipment at key coastal sites, we're gaining valuable insights into how various factors, such as freshwater inputs, tides, temperature, and biological processes, influence ocean pH.
Cale A. Miller, Pierre Urrutti, Jean-Pierre Gattuso, Steeve Comeau, Anaïs Lebrun, Samir Alliouane, Robert W. Schlegel, and Frédéric Gazeau
Biogeosciences, 21, 315–333, https://doi.org/10.5194/bg-21-315-2024, https://doi.org/10.5194/bg-21-315-2024, 2024
Short summary
Short summary
This work describes an experimental system that can replicate and manipulate environmental conditions in marine or aquatic systems. Here, we show how the temperature and salinity of seawater delivered from a fjord is manipulated to experimental tanks on land. By constantly monitoring temperature and salinity in each tank via a computer program, the system continuously adjusts automated flow valves to ensure the seawater in each tank matches the targeted experimental conditions.
Nicolas Metzl, Jonathan Fin, Claire Lo Monaco, Claude Mignon, Samir Alliouane, David Antoine, Guillaume Bourdin, Jacqueline Boutin, Yann Bozec, Pascal Conan, Laurent Coppola, Frédéric Diaz, Eric Douville, Xavier Durrieu de Madron, Jean-Pierre Gattuso, Frédéric Gazeau, Melek Golbol, Bruno Lansard, Dominique Lefèvre, Nathalie Lefèvre, Fabien Lombard, Férial Louanchi, Liliane Merlivat, Léa Olivier, Anne Petrenko, Sébastien Petton, Mireille Pujo-Pay, Christophe Rabouille, Gilles Reverdin, Céline Ridame, Aline Tribollet, Vincenzo Vellucci, Thibaut Wagener, and Cathy Wimart-Rousseau
Earth Syst. Sci. Data, 16, 89–120, https://doi.org/10.5194/essd-16-89-2024, https://doi.org/10.5194/essd-16-89-2024, 2024
Short summary
Short summary
This work presents a synthesis of 44 000 total alkalinity and dissolved inorganic carbon observations obtained between 1993 and 2022 in the Global Ocean and the Mediterranean Sea at the surface and in the water column. Seawater samples were measured using the same method and calibrated with international Certified Reference Material. We describe the data assemblage, quality control and some potential uses of this dataset.
Li-Qing Jiang, Adam V. Subhas, Daniela Basso, Katja Fennel, and Jean-Pierre Gattuso
State Planet, 2-oae2023, 13, https://doi.org/10.5194/sp-2-oae2023-13-2023, https://doi.org/10.5194/sp-2-oae2023-13-2023, 2023
Short summary
Short summary
This paper provides comprehensive guidelines for ocean alkalinity enhancement (OAE) researchers on archiving their metadata and data. It includes data standards for various OAE studies and a universal metadata template. Controlled vocabularies for terms like alkalinization methods are included. These guidelines also apply to ocean acidification data.
Andreas Oschlies, Lennart T. Bach, Rosalind E. M. Rickaby, Terre Satterfield, Romany Webb, and Jean-Pierre Gattuso
State Planet, 2-oae2023, 1, https://doi.org/10.5194/sp-2-oae2023-1-2023, https://doi.org/10.5194/sp-2-oae2023-1-2023, 2023
Short summary
Short summary
Reaching promised climate targets will require the deployment of carbon dioxide removal (CDR). Marine CDR options receive more and more interest. Based on idealized theoretical studies, ocean alkalinity enhancement (OAE) appears as a promising marine CDR method. We provide an overview on the current situation of developing OAE as a marine CDR method and describe the history that has led to the creation of the OAE research best practice guide.
Robert W. Schlegel and Jean-Pierre Gattuso
Earth Syst. Sci. Data, 15, 3733–3746, https://doi.org/10.5194/essd-15-3733-2023, https://doi.org/10.5194/essd-15-3733-2023, 2023
Short summary
Short summary
A single dataset was created for investigations of changes in the socio-ecological systems within seven Arctic fjords by amalgamating roughly 1400 datasets from a number of sources. The many variables in these data were organised into five distinct categories and classified into 14 key drivers. Data for seawater temperature and salinity are available from the late 19th century, with some other drivers having data available from the 1950s and 1960s and the others starting from the 1990s onward.
Jean-Pierre Gattuso, Samir Alliouane, and Philipp Fischer
Earth Syst. Sci. Data, 15, 2809–2825, https://doi.org/10.5194/essd-15-2809-2023, https://doi.org/10.5194/essd-15-2809-2023, 2023
Short summary
Short summary
The Arctic Ocean is subject to high rates of ocean warming and acidification, with critical implications for marine organisms, ecosystems and the services they provide. We report here on the first high-frequency (1 h), multi-year (5 years) dataset of the carbonate system at a coastal site in a high-Arctic fjord (Kongsfjorden, Svalbard). This site is a significant sink for CO2 every month of the year (9 to 17 mol m-2 yr-1). The saturation state of aragonite can be as low as 1.3.
Chloe Carbonne, Steeve Comeau, Phoebe T. W. Chan, Keyla Plichon, Jean-Pierre Gattuso, and Núria Teixidó
Biogeosciences, 19, 4767–4777, https://doi.org/10.5194/bg-19-4767-2022, https://doi.org/10.5194/bg-19-4767-2022, 2022
Short summary
Short summary
For the first time, our study highlights the synergistic effects of a 9-month warming and acidification combined stress on the early life stages of a Mediterranean azooxanthellate coral, Astroides calycularis. Our results predict a decrease in dispersion, settlement, post-settlement linear extention, budding and survival under future global change and that larvae and recruits of A. calycularis are stages of interest for this Mediterranean coral resistance, resilience and conservation.
Phillip Williamson, Hans-Otto Pörtner, Steve Widdicombe, and Jean-Pierre Gattuso
Biogeosciences, 18, 1787–1792, https://doi.org/10.5194/bg-18-1787-2021, https://doi.org/10.5194/bg-18-1787-2021, 2021
Short summary
Short summary
The reliability of ocean acidification research was challenged in early 2020 when a high-profile paper failed to corroborate previously observed impacts of high CO2 on the behaviour of coral reef fish. We now know the reason why: the
replicatedstudies differed in many ways. Open-minded and collaborative assessment of all research results, both negative and positive, remains the best way to develop process-based understanding of the impacts of ocean acidification on marine organisms.
Andrea J. Fassbender, James C. Orr, and Andrew G. Dickson
Biogeosciences, 18, 1407–1415, https://doi.org/10.5194/bg-18-1407-2021, https://doi.org/10.5194/bg-18-1407-2021, 2021
Short summary
Short summary
A decline in upper-ocean pH with time is typically ascribed to ocean acidification. A more quantitative interpretation is often confused by failing to recognize the implications of pH being a logarithmic transform of hydrogen ion concentration rather than an absolute measure. This can lead to an unwitting misinterpretation of pH data. We provide three real-world examples illustrating this and recommend the reporting of both hydrogen ion concentration and pH in studies of ocean chemical change.
Jean-Pierre Gattuso, Bernard Gentili, David Antoine, and David Doxaran
Earth Syst. Sci. Data, 12, 1697–1709, https://doi.org/10.5194/essd-12-1697-2020, https://doi.org/10.5194/essd-12-1697-2020, 2020
Short summary
Short summary
Light is a key ocean variable shaping the composition of benthic and pelagic communities by controlling the three-dimensional distribution of primary producers. It also plays a major role in the global carbon cycle. We provide a continuous monthly data set of the global distribution of light reaching the seabed. It is 4 times longer (21 vs 5 years) than the previous data set, the spatial resolution is better (4.6 vs 9.3 km), and the bathymetric resolution is also better (0.46 vs 3.7 km).
Lester Kwiatkowski, Olivier Torres, Laurent Bopp, Olivier Aumont, Matthew Chamberlain, James R. Christian, John P. Dunne, Marion Gehlen, Tatiana Ilyina, Jasmin G. John, Andrew Lenton, Hongmei Li, Nicole S. Lovenduski, James C. Orr, Julien Palmieri, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Charles A. Stock, Alessandro Tagliabue, Yohei Takano, Jerry Tjiputra, Katsuya Toyama, Hiroyuki Tsujino, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, and Tilo Ziehn
Biogeosciences, 17, 3439–3470, https://doi.org/10.5194/bg-17-3439-2020, https://doi.org/10.5194/bg-17-3439-2020, 2020
Short summary
Short summary
We assess 21st century projections of marine biogeochemistry in the CMIP6 Earth system models. These models represent the most up-to-date understanding of climate change. The models generally project greater surface ocean warming, acidification, subsurface deoxygenation, and euphotic nitrate reductions but lesser primary production declines than the previous generation of models. This has major implications for the impact of anthropogenic climate change on marine ecosystems.
Miguel Gómez Batista, Marc Metian, François Oberhänsli, Simon Pouil, Peter W. Swarzenski, Eric Tambutté, Jean-Pierre Gattuso, Carlos M. Alonso Hernández, and Frédéric Gazeau
Biogeosciences, 17, 887–899, https://doi.org/10.5194/bg-17-887-2020, https://doi.org/10.5194/bg-17-887-2020, 2020
Short summary
Short summary
In this paper, we assessed four methods (total alkalinity anomaly, calcium anomaly, 45Ca incorporation, and 13C incorporation) to determine coral calcification of a reef-building coral. Under all conditions (light vs. dark incubations and ambient vs. lowered pH levels), calcification rates estimated using the alkalinity and calcium anomaly techniques as well as 45Ca incorporation were highly correlated, while significantly different results were obtained with the 13C incorporation technique.
Jens Terhaar, James C. Orr, Marion Gehlen, Christian Ethé, and Laurent Bopp
Biogeosciences, 16, 2343–2367, https://doi.org/10.5194/bg-16-2343-2019, https://doi.org/10.5194/bg-16-2343-2019, 2019
Short summary
Short summary
A budget of anthropogenic carbon in the Arctic Ocean, the main driver of open-ocean acidification, was constructed for the first time using a high-resolution ocean model. The budget reveals that anthropogenic carbon enters the Arctic Ocean mainly by lateral transport; the air–sea flux plays a minor role. Coarser-resolution versions of the same model, typical of earth system models, store less anthropogenic carbon in the Arctic Ocean and thus underestimate ocean acidification in the Arctic Ocean.
Camille Richon, Jean-Claude Dutay, Laurent Bopp, Briac Le Vu, James C. Orr, Samuel Somot, and François Dulac
Biogeosciences, 16, 135–165, https://doi.org/10.5194/bg-16-135-2019, https://doi.org/10.5194/bg-16-135-2019, 2019
Short summary
Short summary
We evaluate the effects of climate change and biogeochemical forcing evolution on the nutrient and plankton cycles of the Mediterranean Sea for the first time. We use a high-resolution coupled physical and biogeochemical model and perform 120-year transient simulations. The results indicate that changes in external nutrient fluxes and climate change may have synergistic or antagonistic effects on nutrient concentrations, depending on the region and the scenario.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
Short summary
Short summary
The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Lydia Kapsenberg, Samir Alliouane, Frédéric Gazeau, Laure Mousseau, and Jean-Pierre Gattuso
Ocean Sci., 13, 411–426, https://doi.org/10.5194/os-13-411-2017, https://doi.org/10.5194/os-13-411-2017, 2017
Short summary
Short summary
In the interest of global ocean change, weekly water samples were collected at a coastal site in the northwestern Mediterranean Sea (2007–2015). Seawater pH declined faster than expected from anthropogenic carbon dioxide increase. Total alkalinity increased, but the driver could not be identified, and it may be linked to changes in freshwater chemistry of watersheds. This is the first coastal acidification time-series providing multiyear data at high temporal resolution.
Ella L. Howes, Karina Kaczmarek, Markus Raitzsch, Antje Mewes, Nienke Bijma, Ingo Horn, Sambuddha Misra, Jean-Pierre Gattuso, and Jelle Bijma
Biogeosciences, 14, 415–430, https://doi.org/10.5194/bg-14-415-2017, https://doi.org/10.5194/bg-14-415-2017, 2017
Short summary
Short summary
To calculate the seawater carbonate system, proxies for 2 out of 7 parameters are required. The boron isotopic composition of foraminifera shells can be used as a proxy for pH and it has been suggested that B / Ca ratios may act as a proxy for carbonate ion concentration. However, differentiating between the effects of pH and [CO32−] is problematic, as they co-vary in natural systems. To deconvolve the effects, we conducted culture experiments with the planktonic foraminifer Orbulina universa.
Merinda C. Nash, Sophie Martin, and Jean-Pierre Gattuso
Biogeosciences, 13, 5937–5945, https://doi.org/10.5194/bg-13-5937-2016, https://doi.org/10.5194/bg-13-5937-2016, 2016
Short summary
Short summary
We carried out a 1-year experiment on coralline algae to test how higher CO2 and temperature might change the mineral composition of the algal skeleton. We expected there to be a decline in magnesium with CO2 and an increase with temperature. We found that CO2 did not change the mineral composition, but higher temperature increased the amount of magnesium.
Stephen M. Griffies, Gokhan Danabasoglu, Paul J. Durack, Alistair J. Adcroft, V. Balaji, Claus W. Böning, Eric P. Chassignet, Enrique Curchitser, Julie Deshayes, Helge Drange, Baylor Fox-Kemper, Peter J. Gleckler, Jonathan M. Gregory, Helmuth Haak, Robert W. Hallberg, Patrick Heimbach, Helene T. Hewitt, David M. Holland, Tatiana Ilyina, Johann H. Jungclaus, Yoshiki Komuro, John P. Krasting, William G. Large, Simon J. Marsland, Simona Masina, Trevor J. McDougall, A. J. George Nurser, James C. Orr, Anna Pirani, Fangli Qiao, Ronald J. Stouffer, Karl E. Taylor, Anne Marie Treguier, Hiroyuki Tsujino, Petteri Uotila, Maria Valdivieso, Qiang Wang, Michael Winton, and Stephen G. Yeager
Geosci. Model Dev., 9, 3231–3296, https://doi.org/10.5194/gmd-9-3231-2016, https://doi.org/10.5194/gmd-9-3231-2016, 2016
Short summary
Short summary
The Ocean Model Intercomparison Project (OMIP) aims to provide a framework for evaluating, understanding, and improving the ocean and sea-ice components of global climate and earth system models contributing to the Coupled Model Intercomparison Project Phase 6 (CMIP6). This document defines OMIP and details a protocol both for simulating global ocean/sea-ice models and for analysing their output.
Timothée Bourgeois, James C. Orr, Laure Resplandy, Jens Terhaar, Christian Ethé, Marion Gehlen, and Laurent Bopp
Biogeosciences, 13, 4167–4185, https://doi.org/10.5194/bg-13-4167-2016, https://doi.org/10.5194/bg-13-4167-2016, 2016
Short summary
Short summary
The global coastal ocean took up 0.1 Pg C yr−1 of anthropogenic carbon during 1993–2012 based on new biogeochemical simulations with an eddying 3-D global model. That is about half of the most recent estimate, an extrapolation based on surface areas. It should not be confused with the continental shelf pump, perhaps 10 times larger, which includes natural as well as anthropogenic carbon. Coastal uptake of anthropogenic carbon is limited by its offshore transport.
Roland Séférian, Marion Gehlen, Laurent Bopp, Laure Resplandy, James C. Orr, Olivier Marti, John P. Dunne, James R. Christian, Scott C. Doney, Tatiana Ilyina, Keith Lindsay, Paul R. Halloran, Christoph Heinze, Joachim Segschneider, Jerry Tjiputra, Olivier Aumont, and Anastasia Romanou
Geosci. Model Dev., 9, 1827–1851, https://doi.org/10.5194/gmd-9-1827-2016, https://doi.org/10.5194/gmd-9-1827-2016, 2016
Short summary
Short summary
This paper explores how the large diversity in spin-up protocols used for ocean biogeochemistry in CMIP5 models contributed to inter-model differences in modeled fields. We show that a link between spin-up duration and skill-score metrics emerges from both individual IPSL-CM5A-LR's results and an ensemble of CMIP5 models. Our study suggests that differences in spin-up protocols constitute a source of inter-model uncertainty which would require more attention in future intercomparison exercises.
T. Erin Cox, Frédéric Gazeau, Samir Alliouane, Iris E. Hendriks, Paul Mahacek, Arnaud Le Fur, and Jean-Pierre Gattuso
Biogeosciences, 13, 2179–2194, https://doi.org/10.5194/bg-13-2179-2016, https://doi.org/10.5194/bg-13-2179-2016, 2016
Short summary
Short summary
The ocean absorbs atmospheric carbon dioxide (CO2) which increases the concentrations of CO2 and decreases pH in a process called ocean acidification. Because seagrass rely on carbon for photosynthesis they are expected to benefit under future ocean acidification. We manipulated pH in a Posidonia oceanica seagrass meadow. Seagrass traits, photosynthesis, and growth were not affected. Any benefit from ocean acidification over the next century on Posidonia physiology and growth may be minimal.
Y. Yang, L. Hansson, and J.-P. Gattuso
Earth Syst. Sci. Data, 8, 79–87, https://doi.org/10.5194/essd-8-79-2016, https://doi.org/10.5194/essd-8-79-2016, 2016
Short summary
Short summary
The exponential growth of studies on the biological response to ocean acidification over the last few decades has generated a large amount of data. To facilitate data comparison, a data compilation was initiated in 2008 and is updated on a regular basis. By January 2015, a total of 581 data sets (over 4,000,000 data points) from 539 papers had been archived.
J. C. Orr and J.-M. Epitalon
Geosci. Model Dev., 8, 485–499, https://doi.org/10.5194/gmd-8-485-2015, https://doi.org/10.5194/gmd-8-485-2015, 2015
Short summary
Short summary
We provide improved routines to model the ocean carbonate system, i.e., to compute ocean pH and related variables from dissolved inorganic carbon and total alkalinity. These routines (1) rely on the fastest available algorithm to solve the alkalinity-pH equation, which converges even under extreme conditions; (2) avoid common model approximations that lead to errors of 3% or more in computed variables; and (3) account for large pressure effects on subsurface pCO2, unlike other packages.
J. Palmiéri, J. C. Orr, J.-C. Dutay, K. Béranger, A. Schneider, J. Beuvier, and S. Somot
Biogeosciences, 12, 781–802, https://doi.org/10.5194/bg-12-781-2015, https://doi.org/10.5194/bg-12-781-2015, 2015
Short summary
Short summary
Different observational-based estimates of CO2 uptake and resulting
acidification of the Mediterranean Sea vary widely. A new study finds
that even the smallest of those are an upper limit because the approach
used assumes air-sea CO2 equilibrium. Then with a lower limit from new
fine-scale numerical model simulations, the authors bracket
Mediterranean Sea CO2 uptake and acidification rates. They conclude that
its rate of surface acidifcation is much like that for typical ocean
waters.
M. Gehlen, R. Séférian, D. O. B. Jones, T. Roy, R. Roth, J. Barry, L. Bopp, S. C. Doney, J. P. Dunne, C. Heinze, F. Joos, J. C. Orr, L. Resplandy, J. Segschneider, and J. Tjiputra
Biogeosciences, 11, 6955–6967, https://doi.org/10.5194/bg-11-6955-2014, https://doi.org/10.5194/bg-11-6955-2014, 2014
Short summary
Short summary
This study evaluates potential impacts of pH reductions on North Atlantic deep-sea ecosystems in response to latest IPCC scenarios.Multi-model projections of pH changes over the seafloor are analysed with reference to a critical threshold based on palaeo-oceanographic studies, contemporary observations and model results. By 2100 under the most severe IPCC CO2 scenario, pH reductions occur over ~23% of deep-sea canyons and ~8% of seamounts – including seamounts proposed as marine protected areas.
J.-P. Gattuso, W. Kirkwood, J. P. Barry, E. Cox, F. Gazeau, L. Hansson, I. Hendriks, D.I. Kline, P. Mahacek, S. Martin, P. McElhany, E. T. Peltzer, J. Reeve, D. Roberts, V. Saderne, K. Tait, S. Widdicombe, and P. G. Brewer
Biogeosciences, 11, 4057–4075, https://doi.org/10.5194/bg-11-4057-2014, https://doi.org/10.5194/bg-11-4057-2014, 2014
L. Bopp, L. Resplandy, J. C. Orr, S. C. Doney, J. P. Dunne, M. Gehlen, P. Halloran, C. Heinze, T. Ilyina, R. Séférian, J. Tjiputra, and M. Vichi
Biogeosciences, 10, 6225–6245, https://doi.org/10.5194/bg-10-6225-2013, https://doi.org/10.5194/bg-10-6225-2013, 2013
C. Maier, F. Bils, M. G. Weinbauer, P. Watremez, M. A. Peck, and J.-P. Gattuso
Biogeosciences, 10, 5671–5680, https://doi.org/10.5194/bg-10-5671-2013, https://doi.org/10.5194/bg-10-5671-2013, 2013
C. Motegi, T. Tanaka, J. Piontek, C. P. D. Brussaard, J.-P. Gattuso, and M. G. Weinbauer
Biogeosciences, 10, 3285–3296, https://doi.org/10.5194/bg-10-3285-2013, https://doi.org/10.5194/bg-10-3285-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
T. Tanaka, S. Alliouane, R. G. B. Bellerby, J. Czerny, A. de Kluijver, U. Riebesell, K. G. Schulz, A. Silyakova, and J.-P. Gattuso
Biogeosciences, 10, 315–325, https://doi.org/10.5194/bg-10-315-2013, https://doi.org/10.5194/bg-10-315-2013, 2013
Related subject area
Biogeochemistry: Open Ocean
Intense and localized export of selected marine snow types at eddy edges in the South Atlantic Ocean
Spatial distributions of iron and manganese in surface waters of the Arctic's Laptev and East Siberian seas
Climate-driven shifts in Southern Ocean primary producers and biogeochemistry in CMIP6 models
Ocean acidification trends and carbonate system dynamics across the North Atlantic subpolar gyre water masses during 2009–2019
Sedimentary organic matter signature hints at the phytoplankton-driven biological carbon pump in the central Arabian Sea
Hydrological cycle amplification imposes spatial patterns on the climate change response of ocean pH and carbonate chemistry
Phytoplankton responses to iron and macronutrient fluxes from subsurface waters in the western North Pacific in summer
Assessing the tropical Atlantic biogeochemical processes in the Norwegian Earth System Model
Evolution of oxygen and stratification and their relationship in the North Pacific Ocean in CMIP6 Earth system models
Evaluation of CMIP6 model performance in simulating historical biogeochemistry across the southern South China Sea
Drivers of decadal trends in the ocean carbon sink in the past, present, and future in Earth system models
Anthropogenic carbon storage and its decadal changes in the Atlantic between 1990–2020
Ocean alkalinity enhancement impacts: regrowth of marine microalgae in alkaline mineral concentrations simulating the initial concentrations after ship-based dispersions
Inadequacies in the representation of sub-seasonal phytoplankton dynamics in Earth system models
Climatic controls on metabolic constraints in the ocean
Effects of grain size and seawater salinity on magnesium hydroxide dissolution and secondary calcium carbonate precipitation kinetics: implications for ocean alkalinity enhancement
Hybrid model estimate of the ocean carbon sink from 1959 to 2022
Relationships between the concentration of particulate organic nitrogen and the inherent optical properties of seawater in oceanic surface waters
Short-term response of Emiliania huxleyi growth and morphology to abrupt salinity stress
Assessing the impact of CO2-equilibrated ocean alkalinity enhancement on microbial metabolic rates in an oligotrophic system
Phosphomonoesterase and phosphodiesterase activities in the eastern Mediterranean in two contrasting seasonal situations
Net primary production annual maxima in the North Atlantic projected to shift in the 21st century
Testing the influence of light on nitrite cycling in the eastern tropical North Pacific
Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary
Technical note: Assessment of float pH data quality control methods – a case study in the subpolar northwest Atlantic Ocean
Linking northeastern North Pacific oxygen changes to upstream surface outcrop variations
Ocean alkalinity enhancement in an open ocean ecosystem: Biogeochemical responses and carbon storage durability
Underestimation of multi-decadal global O2 loss due to an optimal interpolation method
Reviews and syntheses: expanding the global coverage of gross primary production and net community production measurements using Biogeochemical-Argo floats
Characteristics of surface physical and biogeochemical parameters within mesoscale eddies in the Southern Ocean
Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region
The fingerprint of climate variability on the surface ocean cycling of iron and its isotopes
Reconstructing the ocean's mesopelagic zone carbon budget: sensitivity and estimation of parameters associated with prokaryotic remineralization
Seasonal cycles of biogeochemical fluxes in the Scotia Sea, Southern Ocean: a stable isotope approach
Absence of photophysiological response to iron addition in autumn phytoplankton in the Antarctic sea-ice zone
Optimal parameters for the ocean's nutrient, carbon, and oxygen cycles compensate for circulation biases but replumb the biological pump
Importance of multiple sources of iron for the upper-ocean biogeochemistry over the northern Indian Ocean
Exploring the role of different data types and timescales in the quality of marine biogeochemical model calibration
All about nitrite: exploring nitrite sources and sinks in the eastern tropical North Pacific oxygen minimum zone
Fossil coccolith morphological attributes as a new proxy for deep ocean carbonate chemistry
Reconstructing ocean carbon storage with CMIP6 Earth system models and synthetic Argo observations
Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models and optimize observing system design
The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 Earth system models and implications for the carbon cycle
Model estimates of metazoans' contributions to the biological carbon pump
Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean
Nitrite cycling in the primary nitrite maxima of the eastern tropical North Pacific
Hotspots and drivers of compound marine heatwaves and low net primary production extremes
Ecosystem impacts of marine heat waves in the northeast Pacific
Tracing the role of Arctic shelf processes in Si and N cycling and export through the Fram Strait: insights from combined silicon and nitrate isotopes
Controls on the relative abundances and rates of nitrifying microorganisms in the ocean
Alexandre Accardo, Rémi Laxenaire, Alberto Baudena, Sabrina Speich, Rainer Kiko, and Lars Stemmann
Biogeosciences, 22, 1183–1201, https://doi.org/10.5194/bg-22-1183-2025, https://doi.org/10.5194/bg-22-1183-2025, 2025
Short summary
Short summary
The open ocean helps mitigate climate change by storing CO2 via the biological carbon pump (BCP), which involves processes like organic carbon production at the surface and transferring it to the deep ocean via various pathways. By deploying an autonomous platform, we found significant marine snow accumulation from the surface to the mesopelagic zone in frontal regions between eddies. We suggest that the coupling of hydrodynamics at eddy edges and biological activity may enhance this process.
Naoya Kanna, Kazutaka Tateyama, Takuji Waseda, Anna Timofeeva, Maria Papadimitraki, Laura Whitmore, Hajime Obata, Daiki Nomura, Hiroshi Ogawa, Youhei Yamashita, and Igor Polyakov
Biogeosciences, 22, 1057–1076, https://doi.org/10.5194/bg-22-1057-2025, https://doi.org/10.5194/bg-22-1057-2025, 2025
Short summary
Short summary
This article presents data on iron and manganese, essential micronutrients for primary producers in the Arctic Laptev and East Siberian seas (LESS). There, observations were made through international cooperation with the Nansen and Amundsen Basin Observational System expedition during the late summer of 2021. The results from this study indicate that the major sources controlling the iron and manganese distributions on the LESS continental margins are river discharge and shelf sediment input.
Ben J. Fisher, Alex J. Poulton, Michael P. Meredith, Kimberlee Baldry, Oscar Schofield, and Sian F. Henley
Biogeosciences, 22, 975–994, https://doi.org/10.5194/bg-22-975-2025, https://doi.org/10.5194/bg-22-975-2025, 2025
Short summary
Short summary
The Southern Ocean is a rapidly warming environment, with subsequent impacts on ecosystems and biogeochemical cycling. This study examines changes in phytoplankton and biogeochemistry using a range of climate models. Under climate change, the Southern Ocean will be warmer, more acidic and more productive and will have reduced nutrient availability by 2100. However, there is substantial variability between models across key productivity parameters. We propose ways of reducing this uncertainty.
David Curbelo-Hernández, Fiz F. Pérez, Melchor González-Dávila, Sergey V. Gladyshev, Aridane G. González, David González-Santana, Antón Velo, Alexey Sokov, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 5561–5589, https://doi.org/10.5194/bg-21-5561-2024, https://doi.org/10.5194/bg-21-5561-2024, 2024
Short summary
Short summary
The study evaluated CO2–carbonate system dynamics in the North Atlantic subpolar gyre during 2009–2019. Significant ocean acidification, largely due to rising anthropogenic CO2 levels, was found. Cooling, freshening, and enhanced convective processes intensified this trend, affecting calcite and aragonite saturation. The findings contribute to a deeper understanding of ocean acidification and improve our knowledge about its impact on marine ecosystems.
Medhavi Pandey, Haimanti Biswas, Daniel Birgel, Nicole Burdanowitz, and Birgit Gaye
Biogeosciences, 21, 4681–4698, https://doi.org/10.5194/bg-21-4681-2024, https://doi.org/10.5194/bg-21-4681-2024, 2024
Short summary
Short summary
We analysed sea surface temperature (SST) proxy and plankton biomarkers in sediments that accumulate sinking material signatures from surface waters in the central Arabian Sea (21°–11° N, 64° E), a tropical basin impacted by monsoons. We saw a north–south SST gradient, and the biological proxies showed more organic matter from larger algae in the north. Smaller algae and zooplankton were more numerous in the south. These trends were related to ocean–atmospheric processes and oxygen availability.
Allison Hogikyan and Laure Resplandy
Biogeosciences, 21, 4621–4636, https://doi.org/10.5194/bg-21-4621-2024, https://doi.org/10.5194/bg-21-4621-2024, 2024
Short summary
Short summary
Rising atmospheric CO2 influences ocean carbon chemistry, leading to ocean acidification. Global warming introduces spatial patterns in the intensity of ocean acidification. We show that the most prominent spatial patterns are controlled by warming-driven changes in rainfall and evaporation, not by the direct effect of warming on carbon chemistry and pH. These evaporation and rainfall patterns oppose acidification in saltier parts of the ocean and enhance acidification in fresher regions.
Huailin Deng, Koji Suzuki, Ichiro Yasuda, Hiroshi Ogawa, and Jun Nishioka
EGUsphere, https://doi.org/10.5194/egusphere-2024-3064, https://doi.org/10.5194/egusphere-2024-3064, 2024
Short summary
Short summary
Iron (Fe) and nitrate are vital for primary production in the North Pacific. Sedimentary Fe is carried by North Pacific Intermediate Water to the north Pacific, but the nutrient return path and its effect on phytoplankton are unclear. By combining Fe and macronutrient fluxes with phytoplankton composition, this study firstly revealed that Fe supply from subsurface greatly controls diatom abundance and identified the nutrient return path in the subarctic gyre and Kuroshio-Oyashio Transition Area.
Shunya Koseki, Lander R. Crespo, Jerry Tjiputra, Filippa Fransner, Noel S. Keenlyside, and David Rivas
Biogeosciences, 21, 4149–4168, https://doi.org/10.5194/bg-21-4149-2024, https://doi.org/10.5194/bg-21-4149-2024, 2024
Short summary
Short summary
We investigated how the physical biases of an Earth system model influence the marine biogeochemical processes in the tropical Atlantic. With four different configurations of the model, we have shown that the versions with better SST reproduction tend to better represent the primary production and air–sea CO2 flux in terms of climatology, seasonal cycle, and response to climate variability.
Lyuba Novi, Annalisa Bracco, Takamitsu Ito, and Yohei Takano
Biogeosciences, 21, 3985–4005, https://doi.org/10.5194/bg-21-3985-2024, https://doi.org/10.5194/bg-21-3985-2024, 2024
Short summary
Short summary
We explored the relationship between oxygen and stratification in the North Pacific Ocean using a combination of data mining and machine learning. We used isopycnic potential vorticity (IPV) as an indicator to quantify ocean ventilation and analyzed its predictability, a strong O2–IPV connection, and predictability for IPV in the tropical Pacific. This opens new routes for monitoring ocean O2 through few observational sites co-located with more abundant IPV measurements in the tropical Pacific.
Winfred Marshal, Jing Xiang Chung, Nur Hidayah Roseli, Roswati Md Amin, and Mohd Fadzil Bin Mohd Akhir
Biogeosciences, 21, 4007–4035, https://doi.org/10.5194/bg-21-4007-2024, https://doi.org/10.5194/bg-21-4007-2024, 2024
Short summary
Short summary
This study stands out for thoroughly examining CMIP6 ESMs' ability to simulate biogeochemical variables in the southern South China Sea, an economically important region. It assesses variables like chlorophyll, phytoplankton, nitrate, and oxygen on annual and seasonal scales. While global assessments exist, this study addresses a gap by objectively ranking 13 CMIP6 ocean biogeochemistry models' performance at a regional level, focusing on replicating specific observed biogeochemical variables.
Jens Terhaar
Biogeosciences, 21, 3903–3926, https://doi.org/10.5194/bg-21-3903-2024, https://doi.org/10.5194/bg-21-3903-2024, 2024
Short summary
Short summary
Despite the ocean’s importance in the carbon cycle and hence the climate, observing the ocean carbon sink remains challenging. Here, I use an ensemble of 12 models to understand drivers of decadal trends of the past, present, and future ocean carbon sink. I show that 80 % of the decadal trends in the multi-model mean ocean carbon sink can be explained by changes in decadal trends in atmospheric CO2. The remaining 20 % are due to internal climate variability and ocean heat uptake.
Reiner Steinfeldt, Monika Rhein, and Dagmar Kieke
Biogeosciences, 21, 3839–3867, https://doi.org/10.5194/bg-21-3839-2024, https://doi.org/10.5194/bg-21-3839-2024, 2024
Short summary
Short summary
We calculate the amount of anthropogenic carbon (Cant) in the Atlantic for the years 1990, 2000, 2010 and 2020. Cant is the carbon that is taken up by the ocean as a result of humanmade CO2 emissions. To determine the amount of Cant, we apply a technique that is based on the observations of other humanmade gases (e.g., chlorofluorocarbons). Regionally, changes in ocean ventilation have an impact on the storage of Cant. Overall, the increase in Cant is driven by the rising CO2 in the atmosphere.
Stephanie Delacroix, Tor Jensen Nystuen, August E. Dessen Tobiesen, Andrew L. King, and Erik Höglund
Biogeosciences, 21, 3677–3690, https://doi.org/10.5194/bg-21-3677-2024, https://doi.org/10.5194/bg-21-3677-2024, 2024
Short summary
Short summary
The addition of alkaline minerals into the ocean might reduce excessive anthropogenic CO2 emissions. Magnesium hydroxide can be added in large amounts because of its low seawater solubility without reaching harmful pH levels. The toxicity effect results of magnesium hydroxide, by simulating the expected concentrations from a ship's dispersion scenario, demonstrated low impacts on both sensitive and local assemblages of marine microalgae when compared to calcium hydroxide.
Madhavan Girijakumari Keerthi, Olivier Aumont, Lester Kwiatkowski, and Marina Levy
EGUsphere, https://doi.org/10.5194/egusphere-2024-2294, https://doi.org/10.5194/egusphere-2024-2294, 2024
Short summary
Short summary
Our study assesses the capability of CMIP6 models to reproduce satellite observations of sub-seasonal chlorophyll variability. Models struggle to reproduce the sub-seasonal variance and its contribution across timescales. Some models overestimate sub-seasonal variance and exaggerate its role in annual fluctuations, while others underestimate it. Underestimation is likely due to the coarse resolution of models, while overestimation may result from intrinsic oscillations in biogeochemical models.
Precious Mongwe, Matthew Long, Takamitsu Ito, Curtis Deutsch, and Yeray Santana-Falcón
Biogeosciences, 21, 3477–3490, https://doi.org/10.5194/bg-21-3477-2024, https://doi.org/10.5194/bg-21-3477-2024, 2024
Short summary
Short summary
We use a collection of measurements that capture the physiological sensitivity of organisms to temperature and oxygen and a CESM1 large ensemble to investigate how natural climate variations and climate warming will impact the ability of marine heterotrophic marine organisms to support habitats in the future. We find that warming and dissolved oxygen loss over the next several decades will reduce the volume of ocean habitats and will increase organisms' vulnerability to extremes.
Charly A. Moras, Tyler Cyronak, Lennart T. Bach, Renaud Joannes-Boyau, and Kai G. Schulz
Biogeosciences, 21, 3463–3475, https://doi.org/10.5194/bg-21-3463-2024, https://doi.org/10.5194/bg-21-3463-2024, 2024
Short summary
Short summary
We investigate the effects of mineral grain size and seawater salinity on magnesium hydroxide dissolution and calcium carbonate precipitation kinetics for ocean alkalinity enhancement. Salinity did not affect the dissolution, but calcium carbonate formed earlier at lower salinities due to the lower magnesium and dissolved organic carbon concentrations. Smaller grain sizes dissolved faster but calcium carbonate precipitated earlier, suggesting that medium grain sizes are optimal for kinetics.
Jens Terhaar
EGUsphere, https://doi.org/10.5194/egusphere-2024-2171, https://doi.org/10.5194/egusphere-2024-2171, 2024
Short summary
Short summary
The ocean is a major natural carbon sink. Despite its importance, estimates of the ocean carbon sink remain uncertain. Here, I present a hybrid model estimate of the ocean carbon sink from 1959 to 2022. By combining ocean models in hindcast mode and Earth System Models, I keep the strength of each approach and remove the respective weaknesses. This hybrid model estimate is similar in magnitude than the best estimate of the Global Carbon Budget but 70 % less uncertain.
Alain Fumenia, Hubert Loisel, Rick Allen Reynolds, and Dariusz Stramski
EGUsphere, https://doi.org/10.5194/egusphere-2024-2218, https://doi.org/10.5194/egusphere-2024-2218, 2024
Short summary
Short summary
Particulate organic nitrogen (PON) in the ocean refers to nitrogen contained in particles suspended such as phytoplankton, zooplankton, bacteria, viruses, and organic detritus. We used field measurements to determine relationships between PON and inherent optical properties of seawater across a broad range of marine environments. The presented relationships are expected to have application in the assessment of PON distribution and variations from in situ and satellite optical observations
Rosie M. Sheward, Christina Gebühr, Jörg Bollmann, and Jens O. Herrle
Biogeosciences, 21, 3121–3141, https://doi.org/10.5194/bg-21-3121-2024, https://doi.org/10.5194/bg-21-3121-2024, 2024
Short summary
Short summary
How quickly do marine microorganisms respond to salinity stress? Our experiments with the calcifying marine plankton Emiliania huxleyi show that growth and cell morphology responded to salinity stress within as little as 24–48 hours, demonstrating that morphology and calcification are sensitive to salinity over a range of timescales. Our results have implications for understanding the short-term role of E. huxleyi in biogeochemical cycles and in size-based paleoproxies for salinity.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, Joaquín Ortiz, Stephen D. Archer, Andrea Ludwig, and Ulf Riebesell
Biogeosciences, 21, 2859–2876, https://doi.org/10.5194/bg-21-2859-2024, https://doi.org/10.5194/bg-21-2859-2024, 2024
Short summary
Short summary
Our planet is facing a climate crisis. Scientists are working on innovative solutions that will aid in capturing the hard to abate emissions before it is too late. Exciting research reveals that ocean alkalinity enhancement, a key climate change mitigation strategy, does not harm phytoplankton, the cornerstone of marine ecosystems. Through meticulous study, we may have uncovered a positive relationship: up to a specific limit, enhancing ocean alkalinity boosts photosynthesis by certain species.
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, Alexandra Pavlidou, Sandra Nunige, Morgane Didry, Christophe Salmeron, and Elvira Pulido-Villena
Biogeosciences, 21, 2621–2640, https://doi.org/10.5194/bg-21-2621-2024, https://doi.org/10.5194/bg-21-2621-2024, 2024
Short summary
Short summary
Phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea in winter and autumn. The types of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnover times) compared to those of PME (saturation at 1 µM, low Km, low turnover times) are discussed in regard to the possible inequal distribution of PDE and PME in the size continuum of organic material and accessibility to phosphodiesters.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences, 21, 2189–2206, https://doi.org/10.5194/bg-21-2189-2024, https://doi.org/10.5194/bg-21-2189-2024, 2024
Short summary
Short summary
The timing of the net primary production annual maxima in the North Atlantic in the period 1750–2100 is investigated using two Earth system models and the high-emissions scenario SSP5-8.5. It is found that, for most of the region, the annual maxima occur progressively earlier, with the most change occurring after the year 2000. Shifts in the seasonality of the primary production may impact the entire ecosystem, which highlights the need for long-term monitoring campaigns in this area.
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences, 21, 1985–2004, https://doi.org/10.5194/bg-21-1985-2024, https://doi.org/10.5194/bg-21-1985-2024, 2024
Short summary
Short summary
We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high-light conditions alone do not exclude nitrification from occurring in the surface ocean.
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
Short summary
Short summary
The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
Short summary
Short summary
The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
Short summary
Short summary
This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Allanah Joy Paul, Mathias Haunost, Silvan Urs Goldenberg, Jens Hartmann, Nicolás Sánchez, Julieta Schneider, Niels Suitner, and Ulf Riebesell
EGUsphere, https://doi.org/10.5194/egusphere-2024-417, https://doi.org/10.5194/egusphere-2024-417, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is being assessed for its potential to absorb atmospheric CO2 and store it for a long time. OAE still needs comprehensive assessment of its safety and effectiveness. We studied an idealised OAE application in a natural low nutrient ecosystem over one month. Our results showed that biogeochemical functioning remained mostly stable, but that the long-term capability for storing carbon may be limited at high alkalinity concentration.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
Short summary
Short summary
This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
Short summary
Short summary
This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
Short summary
Short summary
In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
Short summary
Short summary
Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
Short summary
Short summary
Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
Short summary
Short summary
Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
Short summary
Short summary
The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
Short summary
Short summary
Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
Short summary
Short summary
Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
Short summary
Short summary
This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
Short summary
Short summary
Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
Short summary
Short summary
Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
Short summary
Short summary
Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
Short summary
Short summary
We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
Short summary
Short summary
Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
Short summary
Short summary
Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
Short summary
Short summary
Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
Short summary
Short summary
Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
Short summary
Short summary
The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
Short summary
Short summary
Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
Short summary
Short summary
Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
Short summary
Short summary
We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
Short summary
Short summary
We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Cited articles
Antonov, J. I., Seidov, D., Boyer, T. P., Locarnini, R. A., Mishonov, A. V., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World Ocean Atlas 2009, Volume 2: Salinity, edited by: Levitus, S., Atlas NESDIS 69, NOAA, US Government Printing Office, Washington DC, 184 pp., 2010.
Byrne, R. H. and Yao, W.: Procedures for measurement of carbonate ion concentrations in seawater by direct spectrophotometric observations of Pb (II) complexation, Mar. Chem., 112, 128–135, 2008.
Cai, W.-J. and Wang, Y.: The chemistry, fluxes, and sources of carbon dioxide in the estuarine waters of the Satilla and Altamaha Rivers, Georgia, Limnol. Oceanogr., 43, 657–668, 1998.
Culberson, C. and Pytkowicz, R. M.: Effect of pressure on carbonic acid, boric acid and the pH in seawater, Limnol. Oceanogr., 13, 403–417, 1968.
Dickson, A. G.: Standard potential of the reaction: AgCl(s)+1/2 H2(g)= Ag(s)+HCl(aq), and the standard acidity constant of the ion HSO4- in synthetic seawater from 273.15 to 318.15 K, Chemical Thermodynamics, 22, 113–127, 1990a.
Dickson, A. G.: Thermodynamics of the dissociation of boric acid in synthetic seawater from 273.15 to 318.15 K, Deep-Sea Res., 37, 755–766, 1990b.
Dickson, A. G.: The carbon dioxide system in seawater: equilibrium chemistry and measurements, in: Guide to Best Practices for Ocean Acidification Research and Data Reporting, edited by: Riebesell, U., Fabry, V. J., Hansson, L., and Gattuso, J.-P., Publications Office of the European Union, 17–40, 2010.
Dickson, A. G. and Goyet, C.: Handbook of methods for the analysis of the various parameters of the carbon dioxide system in seawater; version 2, ORNL/CDIAC-74, ORNL, 1994.
Dickson, A. G. and Millero, F.: A comparison of the equilibrium constants for the dissociation of carbonic acid in seawater media, Deep-Sea Res., 34, 1733–1743, 1987.
Dickson, A. G. and Riley, J. P.: The effect of analytical error on the evaluation of the components of the aquatic carbon-dioxide system, Mar. Chem., 6, 77–85, 1978.
Dickson, A. G. and Riley, J. P.: The estimation of acid dissociation constants in seawater media from potentiometric titrations with strong base, I. The ionic product of water – KW, Mar. Chem., 7, 89–99, 1979.
Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best practices for ocean CO2 measurements, PICES Special Publication 3, 191 pp., 2007.
Easley, R. A., Patsavas, M. C., Byrne, R. H., Liu, X., Feely, R. A., and Mathis, J. T.: Spectrophotometric Measurement of Calcium Carbonate Saturation States in Seawater, Environ. Sci. Technol., 47, 1468–1477, 2013.
Frankignoulle, M.: A complete set of buffer factors for acid/base CO2 system in seawater, J. Marine Syst., 5, 111–118, 1994.
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Zweng, M. M., Baranova, O. K., and Johnson, D. R.: World Ocean Atlas 2009, Volume 4: Nutrients (Phosphate, Nitrate, Silicate), edited by: Levitus, S., Atlas NESDIS 71, NOAA, US Government Printing Office, Washington DC, 398 pp., 2010.
Gattuso, J.-P. and Hansson, L. (Eds.): Ocean Acidification, Oxford Univ. Press, Oxford, UK, 408 pp., 2011.
Gattuso, J.-P. and Lavigne, H.: Technical Note: Approaches and software tools to investigate the impact of ocean acidification, Biogeosciences, 6, 2121–2133, https://doi.org/10.5194/bg-6-2121-2009, 2009.
Gattuso, J.-P., Epitalon, J.-M. and Lavigne, H. : seacarb: seawater carbonate chemistry with R. R package version 3.0.6, The Comprehensive R Archive Network, http://CRAN.R-project.org/package=seacarb (last access: 24 February 2015), 2015.
Goyet, C. and Poisson, A.: New determination of carbonic acid dissociation constants in seawater as a function of temperature and salinity, Deep-Sea Res., 36, 1635–1654, 1989.
Hansson, I.: A new set of acidity constants for carbonic acid and boric acid in sea water, Deep-Sea Res., 20, 461–478, 1973a.
Hansson, I.: The determination of dissociation constants of carbonic acid in synthetic sea water in the salinity range of 20–40 \permil and temperature range of 5–30 °C, Acta Chemica Scandanavia, 27, 931–944, 1973b.
Hofmann, A. F., Soetaert, K., Middelburg, J. J., and Meysman, F. J.: AquaEnv: An Aquatic Acid-Base Modelling Environment in: R. Aquatic Geochemistry, 16, 507–546, 2010.
Hoppe, C. J. M., Langer, G., Rokitta, S. D., Wolf-Gladrow, D. A., and Rost, B.: Implications of observed inconsistencies in carbonate chemistry measurements for ocean acidification studies, Biogeosciences, 9, 2401–2405, https://doi.org/10.5194/bg-9-2401-2012, 2012.
Hunter, K. A.: XLCO2 – Seawater CO2 Equilibrium Calculations Using Excel Version 2, University of Otago, New Zealand, available at: http://neon.otago.ac.nz/research/mfc/people/keith_hunter/software/swco2/ (last access: 24 February 2015), 2007.
Key, R. M., Sabine., C. L., Lee, K., Wanninkhof, R., Bullister, J., Feely, R. A., Millero, F. J., Mordy, C., and Peng, T.-H.: A Global Ocean carbon climatology: results from Global Data Analysis Project (GLODAP), Global Biogeochem. Cy., 18, GB4031, https://doi.org/10.1029/2004GB002247, 2004.
Khoo, K. H., Ramette, R. W., Culberson, C. H., and Bates, R. G.: Determination of hydrogen ion concentrations in seawater from 5 to 40 °C: standard potentials at salinities from 20 to 45 \permil, Anal. Chem., 49, 29–34, 1977.
Kroeker, K. J., Kordas, R. L., Crim, R., Hendriks, I. E., Ramajo, L., Singh, G. S., Duarte, C. M., and Gattuso, J.-P.: Impacts of ocean acidification on marine organisms: quantifying sensitivities and interaction with warming, Glob. Change Biol., 19, 156–159, 2013.
Lee, K., Kim, T.-W., Byrne, R. H., Millero, F. J., Feely, R. A., and Liu, Y.-M.: The universal ratio of boron to chlorinity for the North Pacific and North Atlantic oceans, Geochim. Cosmochim. Ac., 74, 1801–1811, https://doi.org/10.1016/j.gca.2009.12.027, 2010.
Lewis, E. and Wallace, D. W. R.: Program Developed for CO2 System Calculations, ORNL/CDIAC-105, Carbon Dioxide Inf. Anal. Cent., Oak Ridge Natl. Lab., Oak Ridge, Tenn., 38 pp., 1998.
Locarnini, R., Mishonov, A., Antonov, J., Boyer, T., Garcia, H., Baranova, O., Zweng, M., and Johnson, D.: World Ocean Atlas 2009, Volume 1: Temperature, edited by: Levitus, S., Atlas NESDIS 68, NOAA, US Government Printing Office, Washington DC, 184 pp., 2010.
Lueker, T. J., Dickson, A. G., and Keeling, C. D.: Ocean pCO2calculated from dissolved inorganic carbon, alkalinity, and equations for K1 and K2: validation based on laboratory measurements of CO2 in gas and seawater at equilibrium, Mar. Chem., 70, 105–119, 2000.
Martz, T. R., Jannasch, H. W., and Johnson, K. S.: Determination of carbonate ion concentration and inner sphere carbonate ion pairs in seawater by ultraviolet spectrophotometric titration, Mar. Chem., 115, 145–154, 2009.
Mehrbach, C., Culberson, C. H., Hawley, J. E., and Pytkowicz, R. M.: Measurement of the apparent dissociation constants of carbonic acid in seawater at atmospheric pressure, Limnol. Oceanogr., 18, 897–907, 1973.
Millero, F. J.: The thermodynamics of the carbonate system in seawater, Geochim. Cosmochim. Ac., 43, 1651–1661, 1979.
Millero, F. J.: Influence of pressure on chemical processes in the sea, in: Chemical Oceanography, edited by: Riley, J. P. and Chester, R., 1–88, Academic Press, New York, 1983.
Millero, F. J.: Thermodynamics of the carbon dioxide system in the oceans, Geochim. Cosmochim. Ac., 59, 661–677, 1995.
Millero, F. J.: The marine inorganic carbon cycle, Chem. Rev., 107, 308–341, 2007.
Millero, F. J.: Carbonate constants for estuarine waters, Mar. Freshwater Res., 61, 139–142, https://doi.org/10.1071/MF09254, 2010.
Millero, F. J., Graham, T. B., Huang, F., Bustos-Serrano, H., and Pierrot, D.: Dissociation constants of carbonic acid in seawater, Mar. Chem., 100, 80–94, https://doi.org/10.1016/j.marchem.2005.12.001, 2006.
Mojica Prieto, F. J. and Millero, F. J.: The values of pK1 + pK2 for the dissociation of carbonic acid in seawater, Geochim. Cosmochim. Ac., 66, 2529–2540, 2002.
Morris, A. and Riley, J.: The bromide/chlorinity and sulphate/chlorinity ratio in sea water, Deep-Sea Res., 13, 699–705, 1966.
Mosley, L. M., Peake, B. M., and Hunter, K. A.: Modelling of pH and inorganic carbon speciation in estuaries using the composition of the river and seawater end members, Environ. Modell. Softw., 25, 1658–1663, 2010.
Mucci, A.: The solubility of calcite and aragonite in seawater at various salinities, temperatures, and one atmosphere total pressure, Am. J. Sc., 283, 780–799, 1983.
Munhoven, G.: Mathematics of the total alkalinity-pH equation – pathway to robust and universal solution algorithms: the SolveSAPHE package v1.0.1, Geosci. Model Dev., 6, 1367–1388, https://doi.org/10.5194/gmd-6-1367-2013, 2013.
Orr, J. C.: Recent and future changes in ocean carbonate chemistry, in: Ocean Acidification, edited by: Gattuso, J.-P., and Hansson, L., chap. 3, 41–66, Oxford Univ. Press, 2011.
Orr, J. C. and Epitalon, J.-M.: Improved routines to model the ocean carbonate system: mocsy 1.0, Geosci. Model Dev. Discuss., 7, 2877–2902, https://doi.org/10.5194/gmdd-7-2877-2014, 2014.
Orr, J. C. and Epitalon, J.-M.: Improved routines to model the ocean carbonate system: mocsy 2.0, Geosci. Model Dev., 8, 485–499, https://doi.org/10.5194/gmd-8-485-2015, 2015.
Orr, J. C., Najjar, R., Sabine, C. L., and Joos, F.: Abiotic-HOWTO. Internal OCMIP Report, LSCE/CEA Saclay, Gif-sur-Yvette, France, 25 pp., 1999.
Orr, J. C., Fabry, V. J., Aumont, O., Bopp, L., Doney, S. C., Feely, R. A., Gnanadesikan, A., Gruber, N., Ishida, A., Joos, F., Key, R. M., Lindsay, K., Maier-Reimer, E., Matear, R., Monfray, P., Mouchet, A., Najjar, R. G., Plattner, G.-K., Rodgers, K. B., Sabine, C. L., Sarmiento, J. L., Schlitzer, R., Slater, R. D., Totterdell, I. J., Weirig, M.-F., Yamanaka, Y., and Yool, A.: Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms, Nature, 437, 681–686, https://doi.org/10.1038/nature04095, 2005.
Orr, J. C., Epitalon, J.-M., and Gattuso, J.-P.: Comparison of seven packages that compute ocean carbonate chemistry, Biogeosciences Discuss., 11, 5327–5397, https://doi.org/10.5194/bgd-11-5327-2014, 2014. 2014.
Pelletier, G., Lewis, E., and Wallace, D.: CO2SY S.XLS: A calculator for the CO2 system in seawater for Microsoft Excel/VBA, Wash. State Dept. of Ecology/Brookhaven Nat. Lab., Olympia, WA/Upton, NY, USA, 2007.
Perez, F. F. and Fraga, F.: Association constant of fluoride and hydrogen ions in seawater, Mar. Chem., 21, 161–168, 1987.
Pierrot, D., Lewis, E., and Wallace, D. W. R.: MS Excel Program Developed for CO2 System Calculations, Tech. rep., Carbon Dioxide Inf. Anal. Cent., Oak Ridge Natl. Lab., US DOE, Oak Ridge, Tenn., 2006.
Proye, A. and Gattuso, J.-P.: Seacarb, an R package to calculate parameters of the seawater carbonate system, 2003.
R Development Core Team: R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0, 2012.
Riley, J. P.: The occurrence of anomalously high fluoride concentrations in the North Atlantic, Deep-Sea Res., 12, 219–220, 1965.
Riley, J. and Tongudai, M.: The major cation/chlorinity ratios in sea water, Chem. Geol., 2, 263–269, 1967.
Robbins, L. L., Hansen, M. E., Kleypas, J. A., and Meylan, S. C.: CO2calc: a user-friendly carbon calculator for Windows, Mac OS X, and iOS (iPhone), USGS Open-File Report, 2010–1280, 17, 2010.
Roy, R. N., Roy, L. N., Vogel, K. M., Porter-Moore, C., Pearson, T., Good, C. E., Millero, F. J., and Campbell, D. M.: The dissociation constants of carbonic acid in seawater at salinities 5 to 45 and temperatures 0 to 45 °C, Mar. Chem., 44, 249–267, 1993.
Sarmiento, J. L., Le Quéré, C., and Pacala, S.: Limiting future atmospheric carbon dioxide, Global Biogeochem. Cy., 9, 121–137, 1995.
Schlitzer, R.: Interactive analysis and visualization of geoscience data with Ocean Data View, Comput. Geosci., 28, 1211–1218, 2002.
Uppström, L. R.: The Boron/Chlorinity Ratio of Deep-Sea Water from the Pacific Ocean, in: Deep-Sea Research and Oceanographic Abstracts, 21, 161–162, Elsevier, 1974.
van Heuven, S., Pierrot, D., Rae, J. W. B., Lewis, E., and Wallace, D. W. R.: MATLAB program developed for CO2 system calculations, ORNL/CDIAC-105b, Carbon Dioxide Inf. Anal. Cent., Oak Ridge Natl. Lab., US DOE, Oak Ridge, Tenn., 2011.
Weiss, R. F.: Carbon dioxide in water and seawater: the solubility of a non-ideal gas, Mar. Chem., 2, 203–215, 1974.
Wittmann, A. C. and Pörtner, H.-O.: Sensitivities of extant animal taxa to ocean acidification, Nature Climate Change, 3, 995–1001, 2013.
Zeebe, R. E. and Wolf-Gladrow, D. A.: CO2 in Seawater: Equilibrium, Kinetics, Isotopes, Elsevier, Amsterdam, 346 pp., 2001.
Short summary
Basic marine carbonate system variables such as pH are often computed from others. Such calculations are made with many public software packages, but their results have never been compared. A new study compares 10 of these packages, quantifying differences, isolating causes, and making recommendations to reduce future discrepancies. This comparison effort has led to more than a 10-fold reduction in differences between packages for some computed variables.
Basic marine carbonate system variables such as pH are often computed from others. Such...
Altmetrics
Final-revised paper
Preprint