Articles | Volume 13, issue 23
https://doi.org/10.5194/bg-13-6441-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-13-6441-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Use of remote-sensing reflectance to constrain a data assimilating marine biogeochemical model of the Great Barrier Reef
Emlyn M. Jones
CORRESPONDING AUTHOR
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Mark E. Baird
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Mathieu Mongin
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
John Parslow
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Jenny Skerratt
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Jenny Lovell
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Nugzar Margvelashvili
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Richard J. Matear
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Karen Wild-Allen
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Barbara Robson
CSIRO Land and Water, Canberra, 2601, Australia
Farhan Rizwi
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Peter Oke
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Edward King
CSIRO Oceans and Atmosphere, Hobart, 7000, Australia
Thomas Schroeder
CSIRO Oceans and Atmosphere, Brisbane, 4102, Australia
Andy Steven
CSIRO Oceans and Atmosphere, Brisbane, 4102, Australia
John Taylor
CSIRO Data61, Canberra, 2601, Australia
Viewed
Total article views: 6,680 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 09 May 2016)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
5,128 | 1,310 | 242 | 6,680 | 150 | 222 |
- HTML: 5,128
- PDF: 1,310
- XML: 242
- Total: 6,680
- BibTeX: 150
- EndNote: 222
Total article views: 6,215 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 07 Dec 2016)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
4,849 | 1,127 | 239 | 6,215 | 146 | 219 |
- HTML: 4,849
- PDF: 1,127
- XML: 239
- Total: 6,215
- BibTeX: 146
- EndNote: 219
Total article views: 465 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 09 May 2016)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
279 | 183 | 3 | 465 | 4 | 3 |
- HTML: 279
- PDF: 183
- XML: 3
- Total: 465
- BibTeX: 4
- EndNote: 3
Cited
48 citations as recorded by crossref.
- CSIRO Environmental Modelling Suite (EMS): scientific description of the optical and biogeochemical models (vB3p0) M. Baird et al. 10.5194/gmd-13-4503-2020
- The Development of a Floating Mono-Particle “Sun Shield” to Protect Corals from High Irradiance during Bleaching Conditions J. Scofield et al. 10.3390/jmse12101809
- Global marine biogeochemical reanalyses assimilating two different sets of merged ocean colour products D. Ford & R. Barciela 10.1016/j.rse.2017.03.040
- Assimilation of Global Total Chlorophyll OC‐CCI Data and Its Impact on Individual Phytoplankton Fields H. Pradhan et al. 10.1029/2018JC014329
- Deep chlorophyll maximum and nutricline in the Mediterranean Sea: emerging properties from a multi-platform assimilated biogeochemical model experiment A. Teruzzi et al. 10.5194/bg-18-6147-2021
- Model-Observations Synergy in the Coastal Ocean P. De Mey-Frémaux et al. 10.3389/fmars.2019.00436
- Evaluating Alternate Methods of 4D-Var Data Assimilation in a Coupled Hydrodynamic—Four-Component Biogeochemical Model of the California Current System J. Izett et al. 10.1016/j.ocemod.2023.102253
- Meteorological Satellite Observations Reveal Diurnal Exceedance of Water Quality Guideline Thresholds in the Coastal Great Barrier Reef L. Patricio-Valerio et al. 10.3390/rs15092335
- Representing uncertainty in limited-area data assimilating ocean models P. Sandery et al. 10.1016/j.ocemod.2023.102301
- Towards a Multi‐Platform Assimilative System for North Sea Biogeochemistry J. Skákala et al. 10.1029/2020JC016649
- Improved Representation of Underwater Light Field and Its Impact on Ecosystem Dynamics: A Study in the North Sea J. Skákala et al. 10.1029/2020JC016122
- Modelling the impact of phytoplankton cell size and abundance on inherent optical properties (IOPs) and a remotely sensed chlorophyll-a product L. Laiolo et al. 10.1016/j.jmarsys.2020.103460
- Impact of catchment-derived nutrients and sediments on marine water quality on the Great Barrier Reef: An application of the eReefs marine modelling system M. Baird et al. 10.1016/j.marpolbul.2021.112297
- Information content of in situ and remotely sensed chlorophyll-a: Learning from size-structured phytoplankton model L. Laiolo et al. 10.1016/j.jmarsys.2018.03.005
- Reanalysis in Earth System Science: Toward Terrestrial Ecosystem Reanalysis R. Baatz et al. 10.1029/2020RG000715
- Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model P. Lazzari et al. 10.1038/s41598-024-71457-5
- Assimilation of Ocean‐Color Plankton Functional Types to Improve Marine Ecosystem Simulations S. Ciavatta et al. 10.1002/2017JC013490
- Phytoplankton composition from sPACE: Requirements, opportunities, and challenges I. Cetinić et al. 10.1016/j.rse.2023.113964
- Evaluation of nonidentical versus identical twin approaches for observation impact assessments: an ensemble-Kalman-filter-based ocean assimilation application for the Gulf of Mexico L. Yu et al. 10.5194/os-15-1801-2019
- Ocean carbon from space: Current status and priorities for the next decade R. Brewin et al. 10.1016/j.earscirev.2023.104386
- Reversing ocean acidification along the Great Barrier Reef using alkalinity injection M. Mongin et al. 10.1088/1748-9326/ac002d
- Assimilating bio-optical glider data during a phytoplankton bloom in the southern Ross Sea D. Kaufman et al. 10.5194/bg-15-73-2018
- Particulate Backscattering Ratio as an Indicator of Changing Particle Composition in Coastal Waters: Observations From Great Barrier Reef Waters M. Soja‐Woźniak et al. 10.1029/2019JC014998
- Phytoplankton optical fingerprint libraries for development of phytoplankton ocean color satellite products M. Lomas et al. 10.1038/s41597-024-03001-z
- Phytoplankton Light Absorption Impacted by Photoprotective Carotenoids in a Global Ocean Spectrally‐Resolved Biogeochemistry Model E. Álvarez et al. 10.1029/2022MS003126
- How to make ecological models useful for environmental management N. Schuwirth et al. 10.1016/j.ecolmodel.2019.108784
- An ensemble neural network atmospheric correction for Sentinel-3 OLCI over coastal waters providing inherent model uncertainty estimation and sensor noise propagation T. Schroeder et al. 10.1016/j.rse.2021.112848
- Ocean Biology Studied from Space S. Sathyendranath et al. 10.1007/s10712-023-09805-9
- Advancing Marine Biogeochemical and Ecosystem Reanalyses and Forecasts as Tools for Monitoring and Managing Ecosystem Health K. Fennel et al. 10.3389/fmars.2019.00089
- Towards operational 3D-Var assimilation of chlorophyll Biogeochemical-Argo float data into a biogeochemical model of the Mediterranean Sea G. Cossarini et al. 10.1016/j.ocemod.2018.11.005
- eReefs: An operational information system for managing the Great Barrier Reef A. Steven et al. 10.1080/1755876X.2019.1650589
- The Assimilation of Phytoplankton Functional Types for Operational Forecasting in the Northwest European Shelf J. Skákala et al. 10.1029/2018JC014153
- The Influence of Temperature and Community Structure on Light Absorption by Phytoplankton in the North Atlantic R. Brewin et al. 10.3390/s19194182
- Satellite Ocean Colour: Current Status and Future Perspective S. Groom et al. 10.3389/fmars.2019.00485
- Assessment of the spectral downward irradiance at the surface of the Mediterranean Sea using the radiative Ocean-Atmosphere Spectral Irradiance Model (OASIM) P. Lazzari et al. 10.5194/os-17-675-2021
- Changes in Nutrient Concentration Resulting From Floods and Their Impact on the Estuary–Sea Continuum X. Zhou et al. 10.1029/2022JC019327
- A system of metrics for the assessment and improvement of aquatic ecosystem models M. Hipsey et al. 10.1016/j.envsoft.2020.104697
- A high-resolution biogeochemical model (ROMS 3.4 + bio_Fennel) of the East Australian Current system C. Rocha et al. 10.5194/gmd-12-441-2019
- Can assimilation of satellite observations improve subsurface biological properties in a numerical model? A case study for the Gulf of Mexico B. Wang et al. 10.5194/os-17-1141-2021
- Uncertainties in ocean biogeochemical simulations: Application of ensemble data assimilation to a one-dimensional model N. Mamnun et al. 10.3389/fmars.2022.984236
- Enhanced assessment of the eReefs biogeochemical model for the Great Barrier Reef using the Concept/State/Process/System model evaluation framework B. Robson et al. 10.1016/j.envsoft.2020.104707
- Clarifying water clarity: A call to use metrics best suited to corresponding research and management goals in aquatic ecosystems J. Turner et al. 10.1002/lol2.10301
- Advancing parameter estimation with Characteristic Finite Difference Method (CFDM) for a marine ecosystem model by assimilating satellite observations: Spatial distributions M. Xu et al. 10.3389/fmars.2022.997537
- Modeling What We Sample and Sampling What We Model: Challenges for Zooplankton Model Assessment J. Everett et al. 10.3389/fmars.2017.00077
- Simulated nutrient and plankton dynamics in the Great Barrier Reef (2011–2016) J. Skerratt et al. 10.1016/j.jmarsys.2018.12.006
- Sensing the ocean biological carbon pump from space: A review of capabilities, concepts, research gaps and future developments R. Brewin et al. 10.1016/j.earscirev.2021.103604
- Assimilation of coastal and open sea biogeochemical data to improve phytoplankton simulation in the Mediterranean Sea A. Teruzzi et al. 10.1016/j.ocemod.2018.09.007
- Integrating Inland and Coastal Water Quality Data for Actionable Knowledge G. El Serafy et al. 10.3390/rs13152899
48 citations as recorded by crossref.
- CSIRO Environmental Modelling Suite (EMS): scientific description of the optical and biogeochemical models (vB3p0) M. Baird et al. 10.5194/gmd-13-4503-2020
- The Development of a Floating Mono-Particle “Sun Shield” to Protect Corals from High Irradiance during Bleaching Conditions J. Scofield et al. 10.3390/jmse12101809
- Global marine biogeochemical reanalyses assimilating two different sets of merged ocean colour products D. Ford & R. Barciela 10.1016/j.rse.2017.03.040
- Assimilation of Global Total Chlorophyll OC‐CCI Data and Its Impact on Individual Phytoplankton Fields H. Pradhan et al. 10.1029/2018JC014329
- Deep chlorophyll maximum and nutricline in the Mediterranean Sea: emerging properties from a multi-platform assimilated biogeochemical model experiment A. Teruzzi et al. 10.5194/bg-18-6147-2021
- Model-Observations Synergy in the Coastal Ocean P. De Mey-Frémaux et al. 10.3389/fmars.2019.00436
- Evaluating Alternate Methods of 4D-Var Data Assimilation in a Coupled Hydrodynamic—Four-Component Biogeochemical Model of the California Current System J. Izett et al. 10.1016/j.ocemod.2023.102253
- Meteorological Satellite Observations Reveal Diurnal Exceedance of Water Quality Guideline Thresholds in the Coastal Great Barrier Reef L. Patricio-Valerio et al. 10.3390/rs15092335
- Representing uncertainty in limited-area data assimilating ocean models P. Sandery et al. 10.1016/j.ocemod.2023.102301
- Towards a Multi‐Platform Assimilative System for North Sea Biogeochemistry J. Skákala et al. 10.1029/2020JC016649
- Improved Representation of Underwater Light Field and Its Impact on Ecosystem Dynamics: A Study in the North Sea J. Skákala et al. 10.1029/2020JC016122
- Modelling the impact of phytoplankton cell size and abundance on inherent optical properties (IOPs) and a remotely sensed chlorophyll-a product L. Laiolo et al. 10.1016/j.jmarsys.2020.103460
- Impact of catchment-derived nutrients and sediments on marine water quality on the Great Barrier Reef: An application of the eReefs marine modelling system M. Baird et al. 10.1016/j.marpolbul.2021.112297
- Information content of in situ and remotely sensed chlorophyll-a: Learning from size-structured phytoplankton model L. Laiolo et al. 10.1016/j.jmarsys.2018.03.005
- Reanalysis in Earth System Science: Toward Terrestrial Ecosystem Reanalysis R. Baatz et al. 10.1029/2020RG000715
- Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model P. Lazzari et al. 10.1038/s41598-024-71457-5
- Assimilation of Ocean‐Color Plankton Functional Types to Improve Marine Ecosystem Simulations S. Ciavatta et al. 10.1002/2017JC013490
- Phytoplankton composition from sPACE: Requirements, opportunities, and challenges I. Cetinić et al. 10.1016/j.rse.2023.113964
- Evaluation of nonidentical versus identical twin approaches for observation impact assessments: an ensemble-Kalman-filter-based ocean assimilation application for the Gulf of Mexico L. Yu et al. 10.5194/os-15-1801-2019
- Ocean carbon from space: Current status and priorities for the next decade R. Brewin et al. 10.1016/j.earscirev.2023.104386
- Reversing ocean acidification along the Great Barrier Reef using alkalinity injection M. Mongin et al. 10.1088/1748-9326/ac002d
- Assimilating bio-optical glider data during a phytoplankton bloom in the southern Ross Sea D. Kaufman et al. 10.5194/bg-15-73-2018
- Particulate Backscattering Ratio as an Indicator of Changing Particle Composition in Coastal Waters: Observations From Great Barrier Reef Waters M. Soja‐Woźniak et al. 10.1029/2019JC014998
- Phytoplankton optical fingerprint libraries for development of phytoplankton ocean color satellite products M. Lomas et al. 10.1038/s41597-024-03001-z
- Phytoplankton Light Absorption Impacted by Photoprotective Carotenoids in a Global Ocean Spectrally‐Resolved Biogeochemistry Model E. Álvarez et al. 10.1029/2022MS003126
- How to make ecological models useful for environmental management N. Schuwirth et al. 10.1016/j.ecolmodel.2019.108784
- An ensemble neural network atmospheric correction for Sentinel-3 OLCI over coastal waters providing inherent model uncertainty estimation and sensor noise propagation T. Schroeder et al. 10.1016/j.rse.2021.112848
- Ocean Biology Studied from Space S. Sathyendranath et al. 10.1007/s10712-023-09805-9
- Advancing Marine Biogeochemical and Ecosystem Reanalyses and Forecasts as Tools for Monitoring and Managing Ecosystem Health K. Fennel et al. 10.3389/fmars.2019.00089
- Towards operational 3D-Var assimilation of chlorophyll Biogeochemical-Argo float data into a biogeochemical model of the Mediterranean Sea G. Cossarini et al. 10.1016/j.ocemod.2018.11.005
- eReefs: An operational information system for managing the Great Barrier Reef A. Steven et al. 10.1080/1755876X.2019.1650589
- The Assimilation of Phytoplankton Functional Types for Operational Forecasting in the Northwest European Shelf J. Skákala et al. 10.1029/2018JC014153
- The Influence of Temperature and Community Structure on Light Absorption by Phytoplankton in the North Atlantic R. Brewin et al. 10.3390/s19194182
- Satellite Ocean Colour: Current Status and Future Perspective S. Groom et al. 10.3389/fmars.2019.00485
- Assessment of the spectral downward irradiance at the surface of the Mediterranean Sea using the radiative Ocean-Atmosphere Spectral Irradiance Model (OASIM) P. Lazzari et al. 10.5194/os-17-675-2021
- Changes in Nutrient Concentration Resulting From Floods and Their Impact on the Estuary–Sea Continuum X. Zhou et al. 10.1029/2022JC019327
- A system of metrics for the assessment and improvement of aquatic ecosystem models M. Hipsey et al. 10.1016/j.envsoft.2020.104697
- A high-resolution biogeochemical model (ROMS 3.4 + bio_Fennel) of the East Australian Current system C. Rocha et al. 10.5194/gmd-12-441-2019
- Can assimilation of satellite observations improve subsurface biological properties in a numerical model? A case study for the Gulf of Mexico B. Wang et al. 10.5194/os-17-1141-2021
- Uncertainties in ocean biogeochemical simulations: Application of ensemble data assimilation to a one-dimensional model N. Mamnun et al. 10.3389/fmars.2022.984236
- Enhanced assessment of the eReefs biogeochemical model for the Great Barrier Reef using the Concept/State/Process/System model evaluation framework B. Robson et al. 10.1016/j.envsoft.2020.104707
- Clarifying water clarity: A call to use metrics best suited to corresponding research and management goals in aquatic ecosystems J. Turner et al. 10.1002/lol2.10301
- Advancing parameter estimation with Characteristic Finite Difference Method (CFDM) for a marine ecosystem model by assimilating satellite observations: Spatial distributions M. Xu et al. 10.3389/fmars.2022.997537
- Modeling What We Sample and Sampling What We Model: Challenges for Zooplankton Model Assessment J. Everett et al. 10.3389/fmars.2017.00077
- Simulated nutrient and plankton dynamics in the Great Barrier Reef (2011–2016) J. Skerratt et al. 10.1016/j.jmarsys.2018.12.006
- Sensing the ocean biological carbon pump from space: A review of capabilities, concepts, research gaps and future developments R. Brewin et al. 10.1016/j.earscirev.2021.103604
- Assimilation of coastal and open sea biogeochemical data to improve phytoplankton simulation in the Mediterranean Sea A. Teruzzi et al. 10.1016/j.ocemod.2018.09.007
- Integrating Inland and Coastal Water Quality Data for Actionable Knowledge G. El Serafy et al. 10.3390/rs13152899
Saved (final revised paper)
Saved (preprint)
Discussed (final revised paper)
Latest update: 20 Nov 2024
Short summary
Marine biogeochemical models are often used to understand water quality, nutrient and blue-carbon dynamics at scales that range from estuaries and bays, through to the global ocean. We introduce a new methodology allowing for the assimilation of observed remote sensing reflectances, avoiding the need to use empirically derived chlorophyll-a concentrations. This method opens up the possibility to assimilate of reflectances from a variety of missions and potentially non-satellite platforms.
Marine biogeochemical models are often used to understand water quality, nutrient and...
Altmetrics
Final-revised paper
Preprint