Articles | Volume 14, issue 2
https://doi.org/10.5194/bg-14-271-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-271-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Turnover of microbial groups and cell components in soil: 13C analysis of cellular biomarkers
Anna Gunina
CORRESPONDING AUTHOR
Department of Agricultural Soil Science, Georg August University of
Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
Department of Soil Biology and Biochemistry, Dokuchaev Soil Science
Institute, 119017 Moscow, Russia
Michaela Dippold
Department of Agricultural Soil Science, Georg August University of
Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
Bruno Glaser
Department of Soil Biogeochemistry, Institute of Agricultural and
Nutritional Science, Martin Luther University Halle-Wittenberg,
von-Seckendorff-Platz 3, 06120 Halle (Saale), Germany
Yakov Kuzyakov
Department of Agricultural Soil Science, Georg August University of
Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
Department of Soil Science of Temperate Ecosystems,
Georg August University of Göttingen, Büsgenweg 2, 37077
Göttingen, Germany
Institute of Environmental Sciences, Kazan Federal University, 420049
Kazan, Russia
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Cited
78 citations as recorded by crossref.
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- Fungal key players of cellulose utilization: Microbial networks in aggregates of long-term fertilized soils disentangled using 13C-DNA-stable isotope probing Y. Miao et al. 10.1016/j.scitotenv.2022.155051
- Soil Properties Control Microbial Carbon Assimilation and Its Mean Residence Time R. Ali et al. 10.3389/fenvs.2020.00033
- Turnover of gram-negative bacterial biomass-derived carbon through the microbial food web of an agricultural soil T. Zheng et al. 10.1016/j.soilbio.2020.108070
- In vitro Evaluation of Biofilm Biomass Dynamics M. Gryndler et al. 10.1134/S0026261721050064
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- Microbial metabolic potential to transform plant residual carbon Z. Bai et al. 10.1016/j.apsoil.2020.103726
- The extent and pathways of nitrogen loss in turfgrass systems: Age impacts H. Chen et al. 10.1016/j.scitotenv.2018.05.053
- Metagenomic insights into the characteristics of soil microbial communities in the decomposing biomass of Moso bamboo forests under different management practices X. Zhang et al. 10.3389/fmicb.2022.1051721
- Paddy soils have a much higher microbial biomass content than upland soils: A review of the origin, mechanisms, and drivers L. Wei et al. 10.1016/j.agee.2021.107798
- Metagenomics and stable isotope probing reveal the complementary contribution of fungal and bacterial communities in the recycling of dead biomass in forest soil R. López-Mondéjar et al. 10.1016/j.soilbio.2020.107875
- Turnover of bacterial biomass to soil organic matter via fungal biomass and its metabolic implications T. Zheng et al. 10.1016/j.soilbio.2023.108995
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- Methylation procedures affect PLFA results more than selected extraction parameters C. Zosso & G. Wiesenberg 10.1016/j.mimet.2021.106164
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- Earthworms negate the adverse effect of arbuscular mycorrhizae on living bacterial biomass and bacterial necromass accumulation in a subtropical soil X. He et al. 10.1016/j.soilbio.2020.108052
- Microbial carbon use efficiency, biomass turnover, and necromass accumulation in paddy soil depending on fertilization X. Chen et al. 10.1016/j.agee.2020.106816
- Variations in Soil Organic Carbon Fractions and Microbial Community in Rice Fields under an Integrated Cropping System C. Wang et al. 10.3390/agronomy14010081
- Proactive Monitoring of Changes in the Microbial Community Structure in Wastewater Treatment Bioreactors using Phospholipid Fatty Acid Analysis L. Mensah et al. 10.1016/j.engmic.2024.100177
- Revisiting soil microbial biomass: Considering changes in composition with growth rate P. Čapek et al. 10.1016/j.soilbio.2023.109103
- Altered microbial CAZyme families indicated dead biomass decomposition following afforestation C. Ren et al. 10.1016/j.soilbio.2021.108362
- In-situ 13CO2 labeling to trace carbon fluxes in plant-soil-microorganism systems: Review and methodological guideline R. Pang et al. 10.1016/j.rhisph.2021.100441
- Divergent mineralization of hydrophilic and hydrophobic organic substrates and their priming effect in soils depending on their preferential utilization by bacteria and fungi S. Deng et al. 10.1007/s00374-020-01503-7
- Dynamics of soil respiration and microbial communities: Interactive controls of temperature and substrate quality R. Ali et al. 10.1016/j.soilbio.2018.09.010
- Different Response of Plant- and Microbial-Derived Carbon Decomposition Potential between Alpine Steppes and Meadows on the Tibetan Plateau Y. Yuan et al. 10.3390/f14081580
- D2O labelling reveals synthesis of small, water-soluble metabolites in soil C. Warren 10.1016/j.soilbio.2021.108543
- A water stress-adapted inoculum affects rhizosphere fungi, but not bacteria nor wheat C. Giard-Laliberté et al. 10.1093/femsec/fiz080
- Manure application accumulates more nitrogen in paddy soils than rice straw but less from fungal necromass Y. Xia et al. 10.1016/j.agee.2021.107575
- Decreased rhizodeposition, but increased microbial carbon stabilization with soil depth down to 3.6 m L. Peixoto et al. 10.1016/j.soilbio.2020.108008
- Manufacturing triple-isotopically labeled microbial necromass to track C, N and P cycles in terrestrial ecosystems M. Schmitt et al. 10.1016/j.apsoil.2021.104322
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- Preferential uptake of hydrophilic and hydrophobic compounds by bacteria and fungi in upland and paddy soils Y. Xia et al. 10.1016/j.soilbio.2020.107879
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- Functional Genes Highlight Contrasting Elevational Pattern of Bacteria- and Fungi-Derived Compound Decompositions in Forest Soils L. Chen et al. 10.2139/ssrn.4066274
- Nutrient content affects the turnover of fungal biomass in forest topsoil and the composition of associated microbial communities V. Brabcová et al. 10.1016/j.soilbio.2017.12.012
- Glucose and ribose stabilization in soil: Convergence and divergence of carbon pathways assessed by position-specific labeling E. Bore et al. 10.1016/j.soilbio.2018.12.027
- Phosphorus drives adaptive shifts in membrane lipid pools and synthesis between soils C. Warren & O. Butler 10.1016/j.soilbio.2024.109387
- Microbial necromass as the source of soil organic carbon in global ecosystems B. Wang et al. 10.1016/j.soilbio.2021.108422
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- Litter quality controls the contribution of microbial carbon to main microbial groups and soil organic carbon during its decomposition X. Bai et al. 10.1007/s00374-023-01792-8
- Is plant biomass input driving soil organic matter formation processes in grassland soil under contrasting management? A. Gilmullina et al. 10.1016/j.scitotenv.2023.164550
- Forests have a higher soil C sequestration benefit due to lower C mineralization efficiency: Evidence from the central loess plateau case L. Dong et al. 10.1016/j.agee.2022.108144
- Karst biogeochemistry in China: past, present and future Y. Huang & Q. Li 10.1007/s12665-019-8400-3
- Divergent accumulation of microbial necromass and plant lignin components in grassland soils T. Ma et al. 10.1038/s41467-018-05891-1
- 13C methodologies for quantifying biochar stability in soil: A critique P. Chalk & C. Smith 10.1111/ejss.13245
- Mechanisms and implications of bacterial–fungal competition for soil resources C. Wang & Y. Kuzyakov 10.1093/ismejo/wrae073
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- Tibetan Plateau grasslands might increase sequestration of microbial necromass carbon under future warming Q. Zhang et al. 10.1038/s42003-024-06396-y
- Stabilization of microbial residues in soil organic matter after two years of decomposition C. Wang et al. 10.1016/j.soilbio.2019.107687
- Temporal dynamics of soil dissolved organic carbon in temperate forest managed by prescribed burning in Northeast China X. Dou et al. 10.1016/j.envres.2023.117065
- Biomolecular budget of persistent, microbial-derived soil organic carbon: The importance of underexplored pools K. Rempfert et al. 10.1016/j.scitotenv.2024.172916
- Pore‐scale view of microbial turnover: Combining 14C imaging, μCT and zymography after adding soluble carbon to soil pores of specific sizes A. Kravchenko et al. 10.1111/ejss.13001
- High turnover rate of free phospholipids in soil confirms the classic hypothesis of PLFA methodology Y. Zhang et al. 10.1016/j.soilbio.2019.05.023
- Calculation of fungal and bacterial inorganic nitrogen immobilization rates in soil X. Li et al. 10.1016/j.soilbio.2020.108114
- Direct measurement of the in situ decomposition of microbial-derived soil organic matter Y. Hu et al. 10.1016/j.soilbio.2019.107660
- Fate and stabilization of labile carbon in a sandy boreal forest soil – A question of nitrogen availability? N. Meyer et al. 10.1016/j.apsoil.2023.105052
- Distinct responses of soil fungal and bacterial nitrate immobilization to land conversion from forest to agriculture X. Li et al. 10.1016/j.soilbio.2019.03.023
- Distinct carbon incorporation from 13C-labelled rice straw into microbial amino sugars in soils applied with manure versus mineral fertilizer X. Ding et al. 10.1016/j.geoderma.2023.116537
- Contrasting responses of the priming effect to nitrogen deposition in temperate and subtropical forests Q. Wang et al. 10.1016/j.catena.2024.107839
78 citations as recorded by crossref.
- Amino sugars as specific indices for fungal and bacterial residues in soil R. Joergensen 10.1007/s00374-018-1288-3
- Distinct regulation of microbial processes in the immobilization of labile carbon in different soils X. Wang et al. 10.1016/j.soilbio.2020.107723
- Metagenomic highlight contrasting elevational pattern of bacteria- and fungi-derived compound decompositions in forest soils L. Chen et al. 10.1007/s11104-023-06104-5
- Land use types affect soil microbial NO3− immobilization through changed fungal and bacterial contribution in alkaline soils of a subtropical montane agricultural landscape X. Wang et al. 10.1007/s00374-023-01787-5
- Mechanisms for retention of low molecular weight organic carbon varies with soil depth at a coastal prairie ecosystem J. McFarland et al. 10.1016/j.soilbio.2022.108601
- Fungal key players of cellulose utilization: Microbial networks in aggregates of long-term fertilized soils disentangled using 13C-DNA-stable isotope probing Y. Miao et al. 10.1016/j.scitotenv.2022.155051
- Soil Properties Control Microbial Carbon Assimilation and Its Mean Residence Time R. Ali et al. 10.3389/fenvs.2020.00033
- Turnover of gram-negative bacterial biomass-derived carbon through the microbial food web of an agricultural soil T. Zheng et al. 10.1016/j.soilbio.2020.108070
- In vitro Evaluation of Biofilm Biomass Dynamics M. Gryndler et al. 10.1134/S0026261721050064
- Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use M. Arcand et al. 10.3389/fmicb.2017.02293
- Microbial metabolic potential to transform plant residual carbon Z. Bai et al. 10.1016/j.apsoil.2020.103726
- The extent and pathways of nitrogen loss in turfgrass systems: Age impacts H. Chen et al. 10.1016/j.scitotenv.2018.05.053
- Metagenomic insights into the characteristics of soil microbial communities in the decomposing biomass of Moso bamboo forests under different management practices X. Zhang et al. 10.3389/fmicb.2022.1051721
- Paddy soils have a much higher microbial biomass content than upland soils: A review of the origin, mechanisms, and drivers L. Wei et al. 10.1016/j.agee.2021.107798
- Metagenomics and stable isotope probing reveal the complementary contribution of fungal and bacterial communities in the recycling of dead biomass in forest soil R. López-Mondéjar et al. 10.1016/j.soilbio.2020.107875
- Turnover of bacterial biomass to soil organic matter via fungal biomass and its metabolic implications T. Zheng et al. 10.1016/j.soilbio.2023.108995
- Microbial necromass carbon and nitrogen persistence are decoupled in agricultural grassland soils K. Buckeridge et al. 10.1038/s43247-022-00439-0
- Contribution of rhizodeposit associated microbial groups to SOC varies with maize growth stages S. Zhang et al. 10.1016/j.geoderma.2022.115947
- Disentangling immobilization of nitrate by fungi and bacteria in soil to plant residue amendment X. Li et al. 10.1016/j.geoderma.2020.114450
- Methylation procedures affect PLFA results more than selected extraction parameters C. Zosso & G. Wiesenberg 10.1016/j.mimet.2021.106164
- Bacterial necromass determines the response of mineral-associated organic matter to elevated CO2 Y. Li et al. 10.1007/s00374-024-01803-2
- Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling R. López-Mondéjar et al. 10.1038/s41396-018-0084-2
- Metabolic tracing unravels pathways of fungal and bacterial amino sugar formation in soil M. Dippold et al. 10.1111/ejss.12736
- Earthworms negate the adverse effect of arbuscular mycorrhizae on living bacterial biomass and bacterial necromass accumulation in a subtropical soil X. He et al. 10.1016/j.soilbio.2020.108052
- Microbial carbon use efficiency, biomass turnover, and necromass accumulation in paddy soil depending on fertilization X. Chen et al. 10.1016/j.agee.2020.106816
- Variations in Soil Organic Carbon Fractions and Microbial Community in Rice Fields under an Integrated Cropping System C. Wang et al. 10.3390/agronomy14010081
- Proactive Monitoring of Changes in the Microbial Community Structure in Wastewater Treatment Bioreactors using Phospholipid Fatty Acid Analysis L. Mensah et al. 10.1016/j.engmic.2024.100177
- Revisiting soil microbial biomass: Considering changes in composition with growth rate P. Čapek et al. 10.1016/j.soilbio.2023.109103
- Altered microbial CAZyme families indicated dead biomass decomposition following afforestation C. Ren et al. 10.1016/j.soilbio.2021.108362
- In-situ 13CO2 labeling to trace carbon fluxes in plant-soil-microorganism systems: Review and methodological guideline R. Pang et al. 10.1016/j.rhisph.2021.100441
- Divergent mineralization of hydrophilic and hydrophobic organic substrates and their priming effect in soils depending on their preferential utilization by bacteria and fungi S. Deng et al. 10.1007/s00374-020-01503-7
- Dynamics of soil respiration and microbial communities: Interactive controls of temperature and substrate quality R. Ali et al. 10.1016/j.soilbio.2018.09.010
- Different Response of Plant- and Microbial-Derived Carbon Decomposition Potential between Alpine Steppes and Meadows on the Tibetan Plateau Y. Yuan et al. 10.3390/f14081580
- D2O labelling reveals synthesis of small, water-soluble metabolites in soil C. Warren 10.1016/j.soilbio.2021.108543
- A water stress-adapted inoculum affects rhizosphere fungi, but not bacteria nor wheat C. Giard-Laliberté et al. 10.1093/femsec/fiz080
- Manure application accumulates more nitrogen in paddy soils than rice straw but less from fungal necromass Y. Xia et al. 10.1016/j.agee.2021.107575
- Decreased rhizodeposition, but increased microbial carbon stabilization with soil depth down to 3.6 m L. Peixoto et al. 10.1016/j.soilbio.2020.108008
- Manufacturing triple-isotopically labeled microbial necromass to track C, N and P cycles in terrestrial ecosystems M. Schmitt et al. 10.1016/j.apsoil.2021.104322
- Differential effects of forest-floor litter and roots on soil organic carbon formation in a temperate oak forest Y. Zhang et al. 10.1016/j.soilbio.2023.109017
- Effect of nitrogen fertilization on the fate of rice residue-C in paddy soil depending on depth: 13C amino sugar analysis X. Chen et al. 10.1007/s00374-018-1278-5
- Mechanisms for Retention of Low Molecular Weight Organic Carbon Varies with Soil Depth at a Coastal Prairie Ecosystem J. McFarland et al. 10.2139/ssrn.3955839
- Warming yields distinct accumulation patterns of microbial residues in dry and wet alpine grasslands on the Qinghai-Tibetan Plateau X. Ding et al. 10.1007/s00374-020-01474-9
- Living and Dead Microorganisms in Mediating Soil Carbon Stocks Under Long-Term Fertilization in a Rice-Wheat Rotation J. Chen et al. 10.3389/fmicb.2022.854216
- Effects of microbial groups on soil organic carbon accrual and mineralization during high- and low-quality litter decomposition X. Bai et al. 10.1016/j.catena.2024.108051
- Management extensification in oil palm plantations reduces SOC decomposition N. Hennings et al. 10.1016/j.soilbio.2021.108535
- Soil enzyme activities in heavily manured and waterlogged soil cultivated with ryegrass (Lolium multiflorum) T. Rupngam et al. 10.1139/cjss-2023-0097
- Changes of microbial residues after wetland cultivation and restoration X. Ding et al. 10.1007/s00374-019-01341-2
- Nitrogen addition decreases the soil cumulative priming effect and favours soil net carbon gains in Robinia pseudoacacia plantation soil Z. Su & Z. Shangguan 10.1016/j.geoderma.2023.116444
- Impact of single and binary mixtures of phenanthrene and N-PAHs on microbial utilization of 14C-glucose in soil I. Anyanwu & K. Semple 10.1016/j.soilbio.2018.02.009
- Preferential uptake of hydrophilic and hydrophobic compounds by bacteria and fungi in upland and paddy soils Y. Xia et al. 10.1016/j.soilbio.2020.107879
- Variations and controls of soil microbial necromass carbon in grasslands along aridity gradients Y. Xue et al. 10.1016/j.ecolind.2023.111188
- Warming influences carbon and nitrogen assimilation between a widespread Ericaceous shrub and root‐associated fungi S. Hupperts et al. 10.1111/nph.19384
- Functional Genes Highlight Contrasting Elevational Pattern of Bacteria- and Fungi-Derived Compound Decompositions in Forest Soils L. Chen et al. 10.2139/ssrn.4066274
- Nutrient content affects the turnover of fungal biomass in forest topsoil and the composition of associated microbial communities V. Brabcová et al. 10.1016/j.soilbio.2017.12.012
- Glucose and ribose stabilization in soil: Convergence and divergence of carbon pathways assessed by position-specific labeling E. Bore et al. 10.1016/j.soilbio.2018.12.027
- Phosphorus drives adaptive shifts in membrane lipid pools and synthesis between soils C. Warren & O. Butler 10.1016/j.soilbio.2024.109387
- Microbial necromass as the source of soil organic carbon in global ecosystems B. Wang et al. 10.1016/j.soilbio.2021.108422
- Conversion of Tibetan grasslands to croplands decreases accumulation of microbially synthesized compounds in soil Z. Guan et al. 10.1016/j.soilbio.2018.04.023
- Litter quality controls the contribution of microbial carbon to main microbial groups and soil organic carbon during its decomposition X. Bai et al. 10.1007/s00374-023-01792-8
- Is plant biomass input driving soil organic matter formation processes in grassland soil under contrasting management? A. Gilmullina et al. 10.1016/j.scitotenv.2023.164550
- Forests have a higher soil C sequestration benefit due to lower C mineralization efficiency: Evidence from the central loess plateau case L. Dong et al. 10.1016/j.agee.2022.108144
- Karst biogeochemistry in China: past, present and future Y. Huang & Q. Li 10.1007/s12665-019-8400-3
- Divergent accumulation of microbial necromass and plant lignin components in grassland soils T. Ma et al. 10.1038/s41467-018-05891-1
- 13C methodologies for quantifying biochar stability in soil: A critique P. Chalk & C. Smith 10.1111/ejss.13245
- Mechanisms and implications of bacterial–fungal competition for soil resources C. Wang & Y. Kuzyakov 10.1093/ismejo/wrae073
- LC-MS analysis of D2O-labelled soil suggests a large fraction of membrane lipid exists within slow growing microbes C. Warren 10.1016/j.soilbio.2022.108912
- Tibetan Plateau grasslands might increase sequestration of microbial necromass carbon under future warming Q. Zhang et al. 10.1038/s42003-024-06396-y
- Stabilization of microbial residues in soil organic matter after two years of decomposition C. Wang et al. 10.1016/j.soilbio.2019.107687
- Temporal dynamics of soil dissolved organic carbon in temperate forest managed by prescribed burning in Northeast China X. Dou et al. 10.1016/j.envres.2023.117065
- Biomolecular budget of persistent, microbial-derived soil organic carbon: The importance of underexplored pools K. Rempfert et al. 10.1016/j.scitotenv.2024.172916
- Pore‐scale view of microbial turnover: Combining 14C imaging, μCT and zymography after adding soluble carbon to soil pores of specific sizes A. Kravchenko et al. 10.1111/ejss.13001
- High turnover rate of free phospholipids in soil confirms the classic hypothesis of PLFA methodology Y. Zhang et al. 10.1016/j.soilbio.2019.05.023
- Calculation of fungal and bacterial inorganic nitrogen immobilization rates in soil X. Li et al. 10.1016/j.soilbio.2020.108114
- Direct measurement of the in situ decomposition of microbial-derived soil organic matter Y. Hu et al. 10.1016/j.soilbio.2019.107660
- Fate and stabilization of labile carbon in a sandy boreal forest soil – A question of nitrogen availability? N. Meyer et al. 10.1016/j.apsoil.2023.105052
- Distinct responses of soil fungal and bacterial nitrate immobilization to land conversion from forest to agriculture X. Li et al. 10.1016/j.soilbio.2019.03.023
- Distinct carbon incorporation from 13C-labelled rice straw into microbial amino sugars in soils applied with manure versus mineral fertilizer X. Ding et al. 10.1016/j.geoderma.2023.116537
- Contrasting responses of the priming effect to nitrogen deposition in temperate and subtropical forests Q. Wang et al. 10.1016/j.catena.2024.107839
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