Articles | Volume 14, issue 2
https://doi.org/10.5194/bg-14-271-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-271-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
18 Jan 2017
Research article |
| 18 Jan 2017
Turnover of microbial groups and cell components in soil: 13C analysis of cellular biomarkers
Anna Gunina
CORRESPONDING AUTHOR
Department of Agricultural Soil Science, Georg August University of
Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
Department of Soil Biology and Biochemistry, Dokuchaev Soil Science
Institute, 119017 Moscow, Russia
Michaela Dippold
Department of Agricultural Soil Science, Georg August University of
Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
Bruno Glaser
Department of Soil Biogeochemistry, Institute of Agricultural and
Nutritional Science, Martin Luther University Halle-Wittenberg,
von-Seckendorff-Platz 3, 06120 Halle (Saale), Germany
Yakov Kuzyakov
Department of Agricultural Soil Science, Georg August University of
Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
Department of Soil Science of Temperate Ecosystems,
Georg August University of Göttingen, Büsgenweg 2, 37077
Göttingen, Germany
Institute of Environmental Sciences, Kazan Federal University, 420049
Kazan, Russia
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Yakov Kuzyakov and Kazem Zamanian
Biogeosciences, 16, 4783–4803, https://doi.org/10.5194/bg-16-4783-2019, https://doi.org/10.5194/bg-16-4783-2019, 2019
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Agropedogenesis, i.e. soil development under agricultural use, is the anthropogenic modification of soil and environmental factors for optimization of crop production. Maximization of only this function, crop production, leads to declines in all other soil functions and consequently promotes uniformity in soil properties around the globe. Here we developed a new scientific background for the theory of agropedogenesis and the identification of soil degradation stages.
Peter Mueller, Lisa M. Schile-Beers, Thomas J. Mozdzer, Gail L. Chmura, Thomas Dinter, Yakov Kuzyakov, Alma V. de Groot, Peter Esselink, Christian Smit, Andrea D'Alpaos, Carles Ibáñez, Magdalena Lazarus, Urs Neumeier, Beverly J. Johnson, Andrew H. Baldwin, Stephanie A. Yarwood, Diana I. Montemayor, Zaichao Yang, Jihua Wu, Kai Jensen, and Stefanie Nolte
Biogeosciences, 15, 3189–3202, https://doi.org/10.5194/bg-15-3189-2018, https://doi.org/10.5194/bg-15-3189-2018, 2018
Jie Chen, Guoliang Xiao, Yakov Kuzyakov, G. Darrel Jenerette, Ying Ma, Wei Liu, Zhengfeng Wang, and Weijun Shen
Biogeosciences, 14, 2513–2525, https://doi.org/10.5194/bg-14-2513-2017, https://doi.org/10.5194/bg-14-2513-2017, 2017
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We conducted a field manipulation experiment by redistributing 67 % of dry-season rainfall into the wet season while keeping the annual rainfall unchanged in a subtropical forest. Soil net nitrification and N mineralization rates were decreased by 13–20 % in the dry season and increased by 50 % with an accelerated NO3 leaching in the wet season. Functional microbial gene abundance and microbial biomass were the main factors affecting the N-process responses to the rainfall seasonality changes.
Johannes Krohn, Ivana Lozanovska, Yakov Kuzyakov, and Maxim Dorodnikov
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-162, https://doi.org/10.5194/bg-2016-162, 2016
Revised manuscript not accepted
W. Babel, T. Biermann, H. Coners, E. Falge, E. Seeber, J. Ingrisch, P.-M. Schleuß, T. Gerken, J. Leonbacher, T. Leipold, S. Willinghöfer, K. Schützenmeister, O. Shibistova, L. Becker, S. Hafner, S. Spielvogel, X. Li, X. Xu, Y. Sun, L. Zhang, Y. Yang, Y. Ma, K. Wesche, H.-F. Graf, C. Leuschner, G. Guggenberger, Y. Kuzyakov, G. Miehe, and T. Foken
Biogeosciences, 11, 6633–6656, https://doi.org/10.5194/bg-11-6633-2014, https://doi.org/10.5194/bg-11-6633-2014, 2014
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Biogeochemistry: Soils
Diverse organic carbon dynamics captured by radiocarbon analysis of distinct compound classes in a grassland soil
The effects of land use on soil carbon stocks in the UK
Technical note: A validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis
Distinct changes in carbon, nitrogen, and phosphorus cycling in the litter layer across two contrasting forest-tundra ecotones
A microbially-driven and depth-explicit soil organic carbon model constrained by carbon isotopes to reduce equifinality
Vegetation patterns associated with nutrient availability and supply in high-elevation tropical Andean ecosystems
A new approach to continuous monitoring of carbon use efficiency and biosynthesis in soil microbes from measurement of CO2 and O2
Technical note: An open-source, low-cost system for continuous monitoring of low nitrate concentrations in soil and open water
Plutonium concentrations link soil organic matter decline to wind erosion in ploughed soils of South Africa
A Synthesis of Sphagnum Litterbag Experiments: Initial Leaching Losses Bias Decomposition Rate Estimates
Long-term fertilization increases soil but not plant or microbial N in a Chihuahuan Desert grassland
Factors controlling spatiotemporal variability of soil carbon accumulation and stock estimates in a tidal salt marsh
Effect of straw retention and mineral fertilization on P speciation and P-transformation microorganisms in water extractable colloids of a Vertisol
Moisture and temperature effects on the radiocarbon signature of respired carbon dioxide to assess stability of soil carbon in the Tibetan Plateau
Non-mycorrhizal root-associated fungi increase soil C stocks and stability via diverse mechanisms
Nine years of warming and nitrogen addition in the Tibetan grassland promoted loss of soil organic carbon but did not alter the bulk change in chemical structure
Soil priming effects and involved microbial community along salt gradients
Adjustments to the Rock-Eval® thermal analysis for soil organic and inorganic carbon quantification
Ecosystem-specific patterns and drivers of global reactive iron mineral-associated organic carbon
Dark septate endophytic fungi associated with pioneer grass inhabiting volcanic deposits and their functions in promoting plant growth
Global patterns and drivers of phosphorus fractions in natural soils
Reviews and syntheses: Iron – a driver of nitrogen bioavailability in soils?
How well does ramped thermal oxidation quantify the age distribution of soil carbon? Assessing thermal stability of physically and chemically fractionated soil organic matter
Differential temperature sensitivity of intracellular metabolic processes and extracellular soil enzyme activities
Mapping soil organic carbon fractions for Australia, their stocks, and uncertainty
Technical note: The recovery rate of free particulate organic matter from soil samples is strongly affected by the method of density fractionation
Deforestation for agriculture leads to soil warming and enhanced litter decomposition in subarctic soils
Temperature sensitivity of soil organic carbon respiration along a forested elevation gradient in the Rwenzori Mountains, Uganda
The influence of elevated CO2 and soil depth on rhizosphere activity and nutrient availability in a mature Eucalyptus woodland
The paradox of assessing greenhouse gases from soils for nature-based solutions
Management-induced changes in soil organic carbon on global croplands
Pore network modeling as a new tool for determining gas diffusivity in peat
Temperature sensitivity of dark CO2 fixation in temperate forest soils
Effects of precipitation seasonality, irrigation, vegetation cycle and soil type on enhanced weathering – modeling of cropland case studies across four sites
Stable isotope profiles of soil organic carbon in forested and grassland landscapes in the Lake Alaotra basin (Madagascar): insights in past vegetation changes
Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential
Dynamics of rare earth elements and associated major and trace elements during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation
To what extent can soil moisture and soil Cu contamination stresses affect nitrous species emissions? Estimation through calibration of a nitrification–denitrification model
Carbon, nitrogen, and phosphorus stoichiometry of organic matter in Swedish forest soils and its relationship with climate, tree species, and soil texture
Soil geochemistry as a driver of soil organic matter composition: insights from a soil chronosequence
Leaching of inorganic and organic phosphorus and nitrogen in contrasting beech forest soils – seasonal patterns and effects of fertilization
Age and chemistry of dissolved organic carbon reveal enhanced leaching of ancient labile carbon at the permafrost thaw zone
Soil organic carbon stabilization mechanisms and temperature sensitivity in old terraced soils
Effect of organic carbon addition on paddy soil organic carbon decomposition under different irrigation regimes
Soil profile connectivity can impact microbial substrate use, affecting how soil CO2 effluxes are controlled by temperature
Additional carbon inputs to reach a 4 per 1000 objective in Europe: feasibility and projected impacts of climate change based on Century simulations of long-term arable experiments
Cycling and retention of nitrogen in European beech (Fagus sylvatica L.) ecosystems under elevated fructification frequency
Mercury mobility, colloid formation and methylation in a polluted Fluvisol as affected by manure application and flooding–draining cycle
Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model
Similar importance of edaphic and climatic factors for controlling soil organic carbon stocks of the world
Katherine E. Grant, Marisa N. Repasch, Kari M. Finstad, Julia D. Kerr, Maxwell Marple, Christopher J. Larson, Taylor A. B. Broek, Jennifer Pett-Ridge, and Karis J. McFarlane
Biogeosciences, 21, 4395–4411, https://doi.org/10.5194/bg-21-4395-2024, https://doi.org/10.5194/bg-21-4395-2024, 2024
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Soils store organic carbon composed of multiple compounds from plants and microbes for different lengths of time. To understand how soils store these different carbon types, we measure the time each carbon fraction is in a grassland soil profile. Our results show that the length of time each individual soil fraction is in our soil changes. Our approach allows a detailed look at the different components in soils. This study can help improve our understanding of soil dynamics.
Peter Levy, Laura Bentley, Peter Danks, Bridget Emmett, Angus Garbutt, Stephen Heming, Peter Henrys, Aidan Keith, Inma Lebron, Niall McNamara, Richard Pywell, John Redhead, David Robinson, and Alexander Wickenden
Biogeosciences, 21, 4301–4315, https://doi.org/10.5194/bg-21-4301-2024, https://doi.org/10.5194/bg-21-4301-2024, 2024
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We collated a large data set (15 790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects was large. This has important implications for agri-environment schemes seeking to sequester carbon in the soil by altering land use because the effect of a given intervention is very hard to verify.
Marija Stojanova, Pierre Arbelet, François Baudin, Nicolas Bouton, Giovanni Caria, Lorenza Pacini, Nicolas Proix, Edouard Quibel, Achille Thin, and Pierre Barré
Biogeosciences, 21, 4229–4237, https://doi.org/10.5194/bg-21-4229-2024, https://doi.org/10.5194/bg-21-4229-2024, 2024
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Because of its importance for climate regulation and soil health, many studies focus on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, the Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
Frank Hagedorn, Joesphine Imboden, Pavel Moiseev, Decai Gao, Emmanuel Frossard, Daniel Christen, Konstantin Gavazov, and Jasmin Fetzer
EGUsphere, https://doi.org/10.5194/egusphere-2024-2622, https://doi.org/10.5194/egusphere-2024-2622, 2024
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At treeline, plant species change abruptly from low stature plants in tundra to trees in forests. Our study documents that from tundra towards forest, the litter layer gets strongly enriched in nutrients. We show that these litter quality changes alter nutrient processing by soil microbes and increase the nutrient release during decomposition in forest than in tundra. The associated improvement of nutrient availability in the forest potentially stimulates tree growth and treeline shifts.
Marijn Van de Broek, Gerard Govers, Marion Schrumpf, and Johan Six
EGUsphere, https://doi.org/10.5194/egusphere-2024-2205, https://doi.org/10.5194/egusphere-2024-2205, 2024
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Soil organic carbon models are used to predict how soils affect the concentration of CO2 in the atmosphere. We show that equifinality – the phenomenon that different parameter values lead to correct overall model outputs, albeit with a different model behaviour – is an important source of model uncertainty. Our results imply that adding more complexity to soil organic carbon models is unlikely to lead to better predictions, as long as more data to constrain model parameters are not available.
Armando Molina, Veerle Vanacker, Oliver Chadwick, Santiago Zhiminaicela, Marife Corre, and Edzo Veldkamp
Biogeosciences, 21, 3075–3091, https://doi.org/10.5194/bg-21-3075-2024, https://doi.org/10.5194/bg-21-3075-2024, 2024
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The tropical Andes contains unique landscapes where forest patches are surrounded by tussock grasses and cushion-forming plants. The aboveground vegetation composition informs us about belowground nutrient availability: patterns in plant-available nutrients resulted from strong biocycling of cations and removal of soil nutrients by plant uptake or leaching. Future changes in vegetation distribution will affect soil water and solute fluxes and the aquatic ecology of Andean rivers and lakes.
Kyle E. Smart, Daniel O. Breecker, Christopher B. Blackwood, and Timothy M. Gallagher
EGUsphere, https://doi.org/10.5194/egusphere-2024-1757, https://doi.org/10.5194/egusphere-2024-1757, 2024
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When microbes consume carbon within soils, it is important to know how much carbon is respired and lost as carbon dioxide versus how much is used to make new biomass. We used a new approach of monitoring carbon dioxide and oxygen to track the fate of consumed carbon during a series of laboratory experiments where sugar was added to moistened soil. Our approach allowed us to estimate how much sugar was converted to dead microbial biomass, which is more likely to be preserved in soils.
Sahiti Bulusu, Cristina Prieto García, Helen E. Dahlke, and Elad Levintal
Biogeosciences, 21, 3007–3013, https://doi.org/10.5194/bg-21-3007-2024, https://doi.org/10.5194/bg-21-3007-2024, 2024
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Do-it-yourself hardware is a new way to improve measurement resolution. We present a low-cost, automated system for field measurements of low nitrate concentrations in soil porewater and open water bodies. All data hardware components cost USD 1100, which is much cheaper than other available commercial solutions. We provide the complete building guide to reduce technical barriers, which we hope will allow easier reproducibility and set up new soil and environmental monitoring applications.
Joel Mohren, Hendrik Wiesel, Wulf Amelung, L. Keith Fifield, Alexandra Sandhage-Hofmann, Erik Strub, Steven A. Binnie, Stefan Heinze, Elmarie Kotze, Chris Du Preez, Stephen G. Tims, and Tibor J. Dunai
EGUsphere, https://doi.org/10.5194/egusphere-2024-1312, https://doi.org/10.5194/egusphere-2024-1312, 2024
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We measured concentrations of fallout radionuclides (FRNs) in soil samples taken from arable land in South Africa. We find that during the second half of the 20th century CE, the FRN data strongly correlate with the soil organic matter (SOM) content of the soils. The finding implies that wind erosion strongly influenced SOM loss in the soils we investigated. Furthermore, the exponential decline of FRN concentrations and SOM content over time peaks shortly after native grassland is cultivated.
Henning Teickner, Edzer Pebesma, and Klaus-Holger Knorr
EGUsphere, https://doi.org/10.5194/egusphere-2024-1686, https://doi.org/10.5194/egusphere-2024-1686, 2024
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Decomposition rates for Sphagnum mosses, the main peat forming plants in northern peatlands, are often derived from litterbag experiments. Here, we estimate initial leaching losses from available Sphagnum litterbag experiments and analyze how decomposition rates are biased when initial leaching losses are ignored. Our analyses indicate that initial leaching losses range between 3 to 18 mass-% and that this may result in overestimated mass losses when extrapolated to several decades.
Violeta Mendoza-Martinez, Scott L. Collins, and Jennie R. McLaren
Biogeosciences, 21, 2655–2667, https://doi.org/10.5194/bg-21-2655-2024, https://doi.org/10.5194/bg-21-2655-2024, 2024
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We examine the impacts of multi-decadal nitrogen additions on a dryland ecosystem N budget, including the soil, microbial, and plant N pools. After 26 years, there appears to be little impact on the soil microbial or plant community and only minimal increases in N pools within the soil. While perhaps encouraging from a conservation standpoint, we calculate that greater than 95 % of the nitrogen added to the system is not retained and is instead either lost deeper in the soil or emitted as gas.
Sean Fettrow, Andrew Wozniak, Holly A. Michael, and Angelia L. Seyfferth
Biogeosciences, 21, 2367–2384, https://doi.org/10.5194/bg-21-2367-2024, https://doi.org/10.5194/bg-21-2367-2024, 2024
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Salt marshes play a big role in global carbon (C) storage, and C stock estimates are used to predict future changes. However, spatial and temporal gradients in C burial rates over the landscape exist due to variations in water inundation, dominant plant species and stage of growth, and tidal action. We quantified soil C concentrations in soil cores across time and space beside several porewater biogeochemical variables and discussed the controls on variability in soil C in salt marsh ecosystems.
Shanshan Bai, Yifei Ge, Dongtan Yao, Yifan Wang, Jinfang Tan, Shuai Zhang, Yutao Peng, and Xiaoqian Jiang
EGUsphere, https://doi.org/10.5194/egusphere-2024-983, https://doi.org/10.5194/egusphere-2024-983, 2024
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Mineral fertilization led to increases in total P, available P, high-activity inorganic P fractions and organic P, but decreased the abundances of P cycling genes by decreasing soil pH and increasing P in bulk soil. Straw retention brought increases for organic C, total P, available P concentrations in water-extractable colloids (WECs). Abundances of phoD gene and phoD-harbouring Proteobacteria in WECs increased under straw retention, suggesting that the P mineralizing capacity increased.
Andrés Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos A. Sierra
Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands, while temperature did not have any influence. Our models show the correspondence between Δ14C and transit time and could allow understanding future interactions between terrestrial and atmospheric carbon
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms using multiple methods. Overall the fungi benefitted the storage of carbon in soil, mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
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A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
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In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
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We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
Laura Sereni, Bertrand Guenet, Charlotte Blasi, Olivier Crouzet, Jean-Christophe Lata, and Isabelle Lamy
Biogeosciences, 19, 2953–2968, https://doi.org/10.5194/bg-19-2953-2022, https://doi.org/10.5194/bg-19-2953-2022, 2022
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This study focused on the modellisation of two important drivers of soil greenhouse gas emissions: soil contamination and soil moisture change. The aim was to include a Cu function in the soil biogeochemical model DNDC for different soil moisture conditions and then to estimate variation in N2O, NO2 or NOx emissions. Our results show a larger effect of Cu on N2 and N2O emissions than on the other nitrogen species and a higher effect for the soils incubated under constant constant moisture.
Marie Spohn and Johan Stendahl
Biogeosciences, 19, 2171–2186, https://doi.org/10.5194/bg-19-2171-2022, https://doi.org/10.5194/bg-19-2171-2022, 2022
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We explored the ratios of carbon (C), nitrogen (N), and phosphorus (P) of organic matter in Swedish forest soils. The N : P ratio of the organic layer was most strongly related to the mean annual temperature, while the C : N ratios of the organic layer and mineral soil were strongly related to tree species even in the subsoil. The organic P concentration in the mineral soil was strongly affected by soil texture, which diminished the effect of tree species on the C to organic P (C : OP) ratio.
Moritz Mainka, Laura Summerauer, Daniel Wasner, Gina Garland, Marco Griepentrog, Asmeret Asefaw Berhe, and Sebastian Doetterl
Biogeosciences, 19, 1675–1689, https://doi.org/10.5194/bg-19-1675-2022, https://doi.org/10.5194/bg-19-1675-2022, 2022
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The largest share of terrestrial carbon is stored in soils, making them highly relevant as regards global change. Yet, the mechanisms governing soil carbon stabilization are not well understood. The present study contributes to a better understanding of these processes. We show that qualitative changes in soil organic matter (SOM) co-vary with alterations of the soil matrix following soil weathering. Hence, the type of SOM that is stabilized in soils might change as soils develop.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
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As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
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Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Pengzhi Zhao, Daniel Joseph Fallu, Sara Cucchiaro, Paolo Tarolli, Clive Waddington, David Cockcroft, Lisa Snape, Andreas Lang, Sebastian Doetterl, Antony G. Brown, and Kristof Van Oost
Biogeosciences, 18, 6301–6312, https://doi.org/10.5194/bg-18-6301-2021, https://doi.org/10.5194/bg-18-6301-2021, 2021
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We investigate the factors controlling the soil organic carbon (SOC) stability and temperature sensitivity of abandoned prehistoric agricultural terrace soils. Results suggest that the burial of former topsoil due to terracing provided an SOC stabilization mechanism. Both the soil C : N ratio and SOC mineral protection regulate soil SOC temperature sensitivity. However, which mechanism predominantly controls SOC temperature sensitivity depends on the age of the buried terrace soils.
Heleen Deroo, Masuda Akter, Samuel Bodé, Orly Mendoza, Haichao Li, Pascal Boeckx, and Steven Sleutel
Biogeosciences, 18, 5035–5051, https://doi.org/10.5194/bg-18-5035-2021, https://doi.org/10.5194/bg-18-5035-2021, 2021
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We assessed if and how incorporation of exogenous organic carbon (OC) such as straw could affect decomposition of native soil organic carbon (SOC) under different irrigation regimes. Addition of exogenous OC promoted dissolution of native SOC, partly because of increased Fe reduction, leading to more net release of Fe-bound SOC. Yet, there was no proportionate priming of SOC-derived DOC mineralisation. Water-saving irrigation can retard both priming of SOC dissolution and mineralisation.
Frances A. Podrebarac, Sharon A. Billings, Kate A. Edwards, Jérôme Laganière, Matthew J. Norwood, and Susan E. Ziegler
Biogeosciences, 18, 4755–4772, https://doi.org/10.5194/bg-18-4755-2021, https://doi.org/10.5194/bg-18-4755-2021, 2021
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Soil respiration is a large and temperature-responsive flux in the global carbon cycle. We found increases in microbial use of easy to degrade substrates enhanced the temperature response of respiration in soils layered as they are in situ. This enhanced response is consistent with soil composition differences in warm relative to cold climate forests. These results highlight the importance of the intact nature of soils rarely studied in regulating responses of CO2 fluxes to changing temperature.
Elisa Bruni, Bertrand Guenet, Yuanyuan Huang, Hugues Clivot, Iñigo Virto, Roberta Farina, Thomas Kätterer, Philippe Ciais, Manuel Martin, and Claire Chenu
Biogeosciences, 18, 3981–4004, https://doi.org/10.5194/bg-18-3981-2021, https://doi.org/10.5194/bg-18-3981-2021, 2021
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Increasing soil organic carbon (SOC) stocks is beneficial for climate change mitigation and food security. One way to enhance SOC stocks is to increase carbon input to the soil. We estimate the amount of carbon input required to reach a 4 % annual increase in SOC stocks in 14 long-term agricultural experiments around Europe. We found that annual carbon input should increase by 43 % under current temperature conditions, by 54 % for a 1 °C warming scenario and by 120 % for a 5 °C warming scenario.
Rainer Brumme, Bernd Ahrends, Joachim Block, Christoph Schulz, Henning Meesenburg, Uwe Klinck, Markus Wagner, and Partap K. Khanna
Biogeosciences, 18, 3763–3779, https://doi.org/10.5194/bg-18-3763-2021, https://doi.org/10.5194/bg-18-3763-2021, 2021
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In order to study the fate of litter nitrogen in forest soils, we combined a leaf litterfall exchange experiment using 15N-labeled leaf litter with long-term element budgets at seven European beech sites in Germany. It appears that fructification intensity, which has increased in recent decades, has a distinct impact on N retention in forest soils. Despite reduced nitrogen deposition, about 6 and 10 kg ha−1 of nitrogen were retained annually in the soils and in the forest stands, respectively.
Lorenz Gfeller, Andrea Weber, Isabelle Worms, Vera I. Slaveykova, and Adrien Mestrot
Biogeosciences, 18, 3445–3465, https://doi.org/10.5194/bg-18-3445-2021, https://doi.org/10.5194/bg-18-3445-2021, 2021
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Our incubation experiment shows that flooding of polluted floodplain soils may induce pulses of both mercury (Hg) and methylmercury to the soil solution and threaten downstream ecosystems. We demonstrate that mobilization of Hg bound to manganese oxides is a relevant process in organic-matter-poor soils. Addition of organic amendments accelerates this mobilization but also facilitates the formation of nanoparticulate Hg and the subsequent fixation of Hg from soil solution to the soil.
Yao Zhang, Jocelyn M. Lavallee, Andy D. Robertson, Rebecca Even, Stephen M. Ogle, Keith Paustian, and M. Francesca Cotrufo
Biogeosciences, 18, 3147–3171, https://doi.org/10.5194/bg-18-3147-2021, https://doi.org/10.5194/bg-18-3147-2021, 2021
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Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM helps removal of CO2 from the atmosphere. Here we present the result of the continued development of a mathematical model that simulates SOM and its measurable fractions. In this study, we simulated several grassland sites in the US, and the model generally captured the carbon and nitrogen amounts in SOM and their distribution between the measurable fractions throughout the entire soil profile.
Zhongkui Luo, Raphael A. Viscarra-Rossel, and Tian Qian
Biogeosciences, 18, 2063–2073, https://doi.org/10.5194/bg-18-2063-2021, https://doi.org/10.5194/bg-18-2063-2021, 2021
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Using the data from 141 584 whole-soil profiles across the globe, we disentangled the relative importance of biotic, climatic and edaphic variables in controlling global SOC stocks. The results suggested that soil properties and climate contributed similarly to the explained global variance of SOC in four sequential soil layers down to 2 m. However, the most important individual controls are consistently soil-related, challenging current climate-driven framework of SOC dynamics.
Cited articles
Amelung, W., Brodowski, S., Sandhage-Hofmann, A., and Bol, R.: Combining biomarker with stable isotope analyses for assessing the transformation and turnover of soil organic matter, in: Advances in Agronomy, edited by: Sparks, D. L., Advances in Agronomy, 100, 155–250, 2008.
Amelung, W., Kimble, J. M., Samson-Liebig, S., and Follett, R. F.: Restoration of microbial residues in soils of the Conservation Reserve Program, Soil Sci. Soc. Am. J., 65, 1704–1709, 2001a.
Amelung, W., Miltner, A., Zhang, X., and Zech, W.: Fate of microbial residues during litter decomposition as affected by minerals, Soil Sci., 166, 598–606, https://doi.org/10.1097/00010694-200109000-00003, 2001b.
Apostel, C., Dippold, M. A., Glaser, B., and Kuzyakov, Y.: Biochemical pathways of amino acids in soil: Assessment by position-specific labeling and 13C-PLFA analysis, Soil Biol. Biochem., 67, 31–40, 2013.
Baath, E.: Growth rates of bacterial communities in soils at varying pH: A comparison of the thymidine and leucine incorporation techniques, Microb. Ecol., 36, 316–327, https://doi.org/10.1007/s002489900118, 1998.
Bai, Z., Bode, S., Huygens, D., Zhang, X., and Boeckx, P.: Kinetics of amino sugar formation from organic residues of different quality, Soil Biol. Biochem., 57, 814–821, https://doi.org/10.1016/j.soilbio.2012.08.006, 2013.
Blagodatskaya, E. and Kuzyakov, Y.: Active microorganisms in soil: critical review of estimation criteria and approaches, Soil Biol. Biochem., 67, 192–211, 2013.
Bossio, D. A., Scow, K. M., Gunapala, N., and Graham, K. J.: Determinants of soil microbial communities, Effects of agricultural management, season, and soil type on phospholipid fatty acid profiles, Microb. Ecol., 36, 1–12, https://doi.org/10.1007/s002489900087, 1998.
Brant, J. B., Sulzman, E. W., and Myrold, D. D.: Microbial community utilization of added carbon substrates in response to long-term carbon input manipulation, Soil Biol. Biochem., 38, 2219–2232, https://doi.org/10.1016/j.soilbio.2006.01.022, 2006.
Bremer, E. and Kuikman, P.: Microbial utilization of 14C-U-glucose in soil is affected by the amount and timing of glucose additions, Soil Biol. Biochem., 26, 511–517, https://doi.org/10.1016/0038-0717(94)90184-8, 1994.
Derrien, D., Marol, C., and Balesdent, J.: The dynamics of neutral sugars in the rhizosphere of wheat. An approach by C-13 pulse-labelling and GC/C/IRMS, Plant Soil, 267, 243–253, https://doi.org/10.1007/s11104-005-5348-8, 2004.
Dippold, M. A., Boesel, S., Gunina, A., Kuzyakov, Y., and Glaser, B.: Improved delta C-13 analysis of amino sugars in soil by ion chromatography-oxidation-isotope ratio mass spectrometry, Rapid Commun. Mass Sp., 28, 569–576, https://doi.org/10.1002/rcm.6814, 2014.
Dungait, J. A. J., Kemmitt, S. J., Michallon, L., Guo, S., Wen, Q., Brookes, P. C., and Evershed, R. P.: Variable responses of the soil microbial biomass to trace concentrations of 13C-labelled glucose, using 13C-PLFA analysis, Eur. J. Soil Sci., 62, 117–126, https://doi.org/10.1111/j.1365-2389.2010.01321.x, 2011.
Engelking, B., Flessa, H., and Joergensen, R. G.: Shifts in amino sugar and ergosterol contents after addition of sucrose and cellulose to soil, Soil Biol. Biochem., 39, 2111–2118, https://doi.org/10.1016/j.soilbio.2007.03.020, 2007.
Fischer, H., Meyer, A., Fischer, K., and Kuzyakov, Y.: Carbohydrate and amino acid composition of dissolved organic matter leached from soil, Soil Biol. Biochem., 39, 2926–2935, https://doi.org/10.1016/j.soilbio.2007.06.014, 2007.
Fischer H., Ingwersen J., and Kuzyakov Y.: Microbial uptake of low-molecular-weight organic substances out-competes sorption in soil, Eur. J. Soil Sci., 61, 504–513, 2010.
Frostegard, A., Tunlid, A., and Baath, E.: Microbial biomass measured as total lipid phosphate in soils of different organic content, J. Microbiol. Meth., 14, 151–163, https://doi.org/10.1016/0167-7012(91)90018-l, 1991.
Frostegard, A., Tunlid, A., and Baath, E.: Use and misuse of PLFA measurements in soils, Soil Biol. Biochem., 43, 1621–1625, https://doi.org/10.1016/j.soilbio.2010.11.021, 2011.
Gearing, P. J., Gearing, J. N., Maughan, J. T., and Oviatt, C. A.: Isotopic Distribution of Carbon from Sewage Sludge and Eutrophication in the Sediments and Food Web of Estuarine Ecosystems, Environ. Sci. Technol., 25, 295–301, 1991.
Glanville, H., Rousk, J., Golyshin, P., and Jones, D. L.: Mineralization of low molecular weight carbon substrates in soil solution under laboratory and field conditions, Soil Biol. Biochem., 48, 88–95, https://doi.org/10.1016/j.soilbio.2012.01.015, 2012.
Glaser: Compound-specific stable-isotope (d13C) analysis in soil science, 2005.
Glaser, B. and Amelung, W.: Determination of 13C natural abundance of amino acid enantiomers in soil: methodological considerations and first results, Rapid Commun. Mass Sp., 16, 891–898, https://doi.org/10.1002/rcm.650, 2002.
Glaser, B. and Gross, S.: Compound-specific δ13C analysis of individual amino sugars – a tool to quantify timing and amount of soil microbial residue stabilization, Rapid Commun. Mass Sp., 19, 1409–1416, https://doi.org/10.1002/rcm.1913, 2005.
Glaser, B., Turrion, M. B., and Alef, K.: Amino sugars and muramic acid – biomarkers for soil microbial community structure analysis, Soil Biol. Biochem., 36, 399–407, https://doi.org/10.1016/j.soilbio.2003.10.013, 2004.
Glaser, B., Millar, N., and Blum, H.: Sequestration and turnover of bacterial- and fungal-derived carbon in a temperate grassland soil under long-term elevated atmospheric pCO2, Glob. Change Biol., 12, 1521–1531, https://doi.org/10.1111/j.1365-2486.2006.01186.x, 2006.
Gottschalk, G.: Bacterial Metabolism, Springer-Verlag New York, New York, 1979.
Gregorich, E. G., Voroney, R. P., and Kachanoski, R. G.: Turnover of carbon through the microbial biomass in soil with different textures, Soil Biol. Biochem., 23, 799–805, https://doi.org/10.1016/0038-0717(91)90152-a, 1991.
Gunina, A. and Kuzyakov, Y.: Sugars in soil and sweets for microorganisms: Review of origin, content, composition and fate, Soil Biol. Biochem., 90, 87–100, https://doi.org/10.1016/j.soilbio.2015.07.021, 2015.
Gunina, A., Dippold, M., Glaser, B., and Kuzyakov, Y.: Fate of low molecular weight organic substances in an arable soil: From microbial uptake to utilisation and stabilisation, Soil Biol. Biochem., 77, 304–313, 2014.
Indorf, C., Stamm, F., Dyckmans, J., and Joergensen, R. G.: Determination of saprotrophic fungi turnover in different substrates by glucosamine-specific delta C-13 liquid chromatography/isotope ratio mass spectrometry, Fungal Ecol., 5, 694–701, https://doi.org/10.1016/j.funeco.2012.07.001, 2012.
IUSS Working Group WRB: World Reference Base for Soil Resources 2014, update 2015 International soil classification system for naming soils and creating legends for soil maps, World Soil Resources Reports No. 106, FAO, Rome, 2015.
Jenkinson, D. S. and Ladd, J. N.: Microbial biomass in soil: measurement and turnover, Soil Biochemistry, Marcel Dekker, New York, 415–471, 1981.
Kieft, T. L., Wilch, E., O'Connor, K., Ringelberg, D. B, and White, D. C.: Survival and phospholipid fatty acid profiles of surface and subsurface bacteria in natural sediment microcosms, Appl. Environ. Microbiol., 63, 1531–1542, 1997.
Kindler, R., Miltner, A., Richnow, H.-H., and Kaestner, M.: Fate of gram-negative bacterial biomass in soil – mineralization and contribution to SOM, Soil Biol. Biochem., 38, 2860–2870, https://doi.org/10.1016/j.soilbio.2006.04.047, 2006.
Kindler, R., Miltner, A., Thullner, M., Richnow, H.-H., and Kaestner, M.: Fate of bacterial biomass derived fatty acids in soil and their contribution to soil organic matter, Org. Geochem., 40, 29–37, https://doi.org/10.1016/j.orggeochem.2008.09.005, 2009.
Knapp, D.: Handbook of Analytical Derivatization Reagents, Wiley, New York, 1979.
Kouno, K., Wu, J., and Brookes, P. C.: Turnover of biomass C and P in soil following incorporation of glucose or ryegrass, Soil Biol. Biochem., 34, 617–622, https://doi.org/10.1016/s0038-0717(01)00218-8, 2002.
Kuzyakov, Y.: How to link soil C pools with CO2 fluxes?, Biogeosciences, 8, 1523–1537, https://doi.org/10.5194/bg-8-1523-2011, 2011.
Lengeler, J. W., Drews, G., and Schlegel, H. G.: Biology of the prokaryotes, Georg Thieme Verlag, 955, 110–163, 1999.
Liang, C., Fujinuma, R., and Balser, T. C.: Comparing PLFA and amino sugars for microbial analysis in an Upper Michigan old growth forest, Soil Biol. Biochem., 40, 2063–2065, https://doi.org/10.1016/j.soilbio.2008.01.022, 2008.
Lutzow, M. v., Koegel-Knabner, I., Ekschmitt, K., Matzner, E., Guggenberger, G., Marschner, B., and Flessa, H.: Stabilization of organic matter in temperate soils: mechanisms and their relevance under different soil conditions – a review, Eur. J. Soil Sci., 57, 426–445, https://doi.org/10.1111/j.1365-2389.2006.00809.x, 2006.
Malik, A., Blagodatskaya, E., and Gleixner, G.: Soil microbial carbon turnover decreases with increasing molecular size, Soil Biol. Biochem., 62, 115–118, https://doi.org/10.1016/j.soilbio.2013.02.022, 2013.
Malik, A., Dannert, H., Griffiths, R. I., Thomson, B. C., and Gleixner, G.: Rhizosphere bacterial carbon turnover is higher in nucleic acids than membrane lipids: implications for understanding soil carbon cycling, Front. Microbiol., 6, 268, https://doi.org/10.3389/fmicb.2015.00268, 2015.
Moore, J. C., McCann, K., and Ruiter, P. C. de: Modeling trophic pathways, nutrient cycling, and dynamic stability in soils, Pedobiologia, 49, 499–510, https://doi.org/10.1016/j.pedobi.2005.05.008, 2005.
Park, J. T. and Uehara, T.: How bacteria consume their own exoskeletons (Turnover and recycling of cell wall peptidoglycan), Microbiol. Mol. Biol. R., 72, 211–227, https://doi.org/10.1128/mmbr.00027-07, 2008.
Parton, W. J., Schimel, D. S., Cole, C. V., and Ojima, D. S.: Analysis of factors controlling soil organic matter levels in Great Plains grasslands, Soil Sci. Soc. Am. J., 51, 1173–1179, 1987.
Perelo, L. W. and Munch, J. C.: Microbial immobilisation and turnover of 13C labelled substrates in two arable soils under field and laboratory conditions, Soil Biol. Biochem., 37, 2263–2272, https://doi.org/10.1016/j.soilbio.2005.02.039, 2005.
Reischke, S., Rousk, J., and Bååth, E.: The effects of glucose loading rates on bacterial and fungal growth in soil, Soil Biol. Biochem., 70, 88–95, 2014.
Rethemeyer, J.: Age heterogeneity of soil organic matter, 2004.
Rethemeyer, J., Kramer, C., Gleixner, G., John, B., Yamashita, T., Flessa, H., Andersen, N., Nadeau, M. J., and Grootes, P. M.: Transformation of organic matter in agricultural soils: radiocarbon concentration versus soil depth, Geoderma, 128, 94–105, https://doi.org/10.1016/j.geoderma.2004.12.017, 2005.
Rousk, J. and Baath, E.: Fungal biomass production and turnover in soil estimated using the acetate-in-ergosterol technique, Soil Biol. Biochem., 39, 2173–2177, https://doi.org/10.1016/j.soilbio.2007.03.023, 2007.
Ruess, L., Schutz, K., Haubert, D., Haggblom, M. M., Kandeler, E., and Scheu, S.: Application of lipid analysis to understand trophic interactions in soil, Ecology, 86, 2075–2082, https://doi.org/10.1890/04-1399, 2005.
Schimel, J. P. and Weintraub, M. N.: The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model, Soil Biol. Biochem., 35, 549–563, 2003.
Schmidt, S. K., Costello, E. K., Nemergut, D. R., Cleveland, C. C., Reed, S. C., Weintraub, M. N., Meyer, A. F., and Martin, A. M.: Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil, Ecology, 88, 1379–1385, https://doi.org/10.1890/06-0164, 2007.
Schneckenberger, K., Demin, D., Stahr, K., and Kuzyakov, Y.: Microbial utilization and mineralization of 14C glucose added in six orders of concentration to soil, Soil Biol. Biochem., 40, 1981–1988, https://doi.org/10.1016/j.soilbio.2008.02.020, 2008.
Wagner, G. H.: Significance of microbial tissue to soil organic matter. In: Isotopes and radiation in soil organic matter studies, FAO/IAEA, Vienna, 197–205, 1968.
Wallander, H., Ekblad, A., Godbold, D. L., Johnson, D., Bahr, A., Baldrian, P., Bjork, R. G., Kieliszewska-Rokicka, B., Kjoller, R., Kraigher, H., Plassard, C., and Rudawska, M.: Evaluation of methods to estimate production, biomass and turnover of ectomycorrhizal mycelium in forests soils – A review, Soil Biol. Biochem., 57, 1034–1047, https://doi.org/10.1016/j.soilbio.2012.08.027, 2013.
Waring, B. G., Averill, C., Hawkes, C. V., and Holyoak, M.: Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: Insights from meta-analysis and theoretical models, Ecol. Lett., 16, 887–894, https://doi.org/10.1111/ele.12125, 2013.
Wu, J., Joergensen, R. G., Pommerening, B., Chaussod, R., and Brookes, P. C.: Measurement of soil microbial biomass C by fumigation extraction – an automated procedure, Soil Biol. Biochem., 22, 1167–1169, https://doi.org/10.1016/0038-0717(90)90046-3, 1990.
Wu, J., Brookes, P. C., and Jenkinson, D. S.: Formation and destruction of microbial biomass during the decomposition of glucose and ryegrass in soil, Soil Biol. Biochem., 25, 1435–1441, https://doi.org/10.1016/0038-0717(93)90058-j, 1993.
Zelles, L.: Phospholipid fatty acid profiles in selected members of soil microbial communities, Chemosphere, 35, 275–294, https://doi.org/10.1016/s0045-6535(97)00155-0, 1997.
Zelles, L., Palojarvi, A., Kandeler, E., VonLutzow, M., Winter, K., and Bai, Q. Y.: Changes in soil microbial properties and phospholipid fatty acid fractions after chloroform fumigation, Soil Biol. Biochem., 29, 1325–1336, https://doi.org/10.1016/s0038-0717(97)00062-x, 1997.
Zhang, H., Ding, W., Yu, H., and He, X.: Carbon uptake by a microbial community during 30-day treatment with C-13-glucose of a sandy loam soil fertilized for 20 years with NPK or compost as determined by a GC-C-IRMS analysis of phospholipid fatty acids, Soil Biol. Biochem., 57, 228–236, https://doi.org/10.1016/j.soilbio.2012.08.024, 2013.
Zhang, X. D. and Amelung, W.: Gas chromatographic determination of muramic acid, glucosamine, mannosamine, and galactosamine in soils, Soil Biol. Biochem., 28, 1201–1206, https://doi.org/10.1016/0038-0717(96)00117-4, 1996.
Ziegler, S. E., White, P. M., Wolf, D. C., and Thoma, G. J.: Tracking the fate and recycling of C-13-labeled glucose in soil, Soil Sci., 170, 767–778, https://doi.org/10.1097/01.ss.0000190511.64169.9c, 2005.
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