Articles | Volume 15, issue 16
https://doi.org/10.5194/bg-15-4923-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-4923-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
21 Aug 2018
Research article |
| 21 Aug 2018
| 21 Aug 2018
Colony formation in Phaeocystis antarctica: connecting molecular mechanisms with iron biogeochemistry
Sara J. Bender
Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic
Institution, Woods Hole, Massachusetts 02543, USA
current address: Gordon and Betty Moore Foundation, Palo Alto,
California 94304, USA
Dawn M. Moran
Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic
Institution, Woods Hole, Massachusetts 02543, USA
Matthew R. McIlvin
Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic
Institution, Woods Hole, Massachusetts 02543, USA
Hong Zheng
Microbial and Environmental Genomics, J. Craig Venter Institute, La
Jolla, California 92037, USA
John P. McCrow
Microbial and Environmental Genomics, J. Craig Venter Institute, La
Jolla, California 92037, USA
Jonathan Badger
Microbial and Environmental Genomics, J. Craig Venter Institute, La
Jolla, California 92037, USA
current address: Center for Cancer Research, Bethesda, Maryland 20892,
USA
Giacomo R. DiTullio
College of Charleston, Charleston South Carolina 29412, USA
Andrew E. Allen
Microbial and Environmental Genomics, J. Craig Venter Institute, La
Jolla, California 92037, USA
Integrative Oceanography Division, Scripps Institution of
Oceanography, UC San Diego, La Jolla, California 92037, USA
Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic
Institution, Woods Hole, Massachusetts 02543, USA
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- Spatial-Related Community Structure and Dynamics in Phytoplankton of the Ross Sea, Antarctica F. Bolinesi et al. 10.3389/fmars.2020.574963
- Impact of ocean acidification and high solar radiation on productivity and species composition of a late summer phytoplankton community of the coastal Western Antarctic Peninsula J. Heiden et al. 10.1002/lno.11147
- On the Relationship between a Novel Prorocentrum sp. and Colonial Phaeocystis antarctica under Iron and Vitamin B12 Limitation: Ecological Implications for Antarctic Waters F. Bolinesi et al. 10.3390/app10196965
- Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators M. Wu et al. 10.1038/s41467-019-11426-z
- Molecular Mechanisms for Iron Uptake and Homeostasis in Marine Eukaryotic Phytoplankton R. Lampe et al. 10.1146/annurev-micro-041222-023252
- Phaeocystis antarctica unusual summer bloom in stratified antarctic coastal waters (Terra Nova Bay, Ross Sea) O. Mangoni et al. 10.1016/j.marenvres.2019.05.012
- Haploid Helps Phaeocystis Globosa Distribute to Deeper Dim Water, as Evidenced by Growth and Photosynthetic Physiology J. Zhuang et al. 10.3389/fmars.2022.902330
- Iron and light limitation of phytoplankton growth off East Antarctica C. Vives et al. 10.1016/j.jmarsys.2022.103774
- Chasing iron bioavailability in the Southern Ocean: Insights from Phaeocystis antarctica and iron speciation M. Fourquez et al. 10.1126/sciadv.adf9696
- Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 –independent methionine synthase with widespread homologues D. Rao et al. 10.1073/pnas.2204075121
- Comparative transcriptomics reveals colony formation mechanism of a harmful algal bloom species Phaeocystis globosa S. Zhang et al. 10.1016/j.scitotenv.2020.137454
- Cloning and heterologous expression of a UDP-sugar-producing pyrophosphorylase gene from the harmful alga Phaeocystis globosa (Prymnesiophyceae) and its possible function in colony formation D. Liang et al. 10.1016/j.algal.2021.102441
- Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection B. Kolody et al. 10.1038/s41396-019-0472-2
- Global analysis of ocean phytoplankton nutrient limitation reveals high prevalence of co-limitation T. Browning & C. Moore 10.1038/s41467-023-40774-0
- Factors controlling the competition between <i>Phaeocystis</i> and diatoms in the Southern Ocean and implications for carbon export fluxes C. Nissen & M. Vogt 10.5194/bg-18-251-2021
- Deciphering Patterns of Adaptation and Acclimation in the Transcriptome of Phaeocystis antarctica to Changing Iron Conditions1 M. Rizkallah et al. 10.1111/jpy.12979
- Online Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase–Reversed Phase Liquid Chromatography High-Resolution Mass Spectrometry for Metaproteomics of Environmental and Microbiome Samples M. McIlvin & M. Saito 10.1021/acs.jproteome.1c00588
- Dissolved Domoic Acid Does Not Improve Growth Rates and Iron Content in Iron-Stressed Pseudo-Nitzschia subcurvata J. Geuer et al. 10.3389/fmars.2020.00478
- Chromosome-scale genome assembly reveals insights into the evolution and ecology of the harmful algal bloom species Phaeocystis globosa Scherffel N. Chen et al. 10.1016/j.isci.2024.110575
- Marked spatiotemporal variations in small phytoplankton structure in contrasted waters of the Southern Ocean (Kerguelen area) S. Irion et al. 10.1002/lno.11555
- Biogeochemistry of the Ross Sea and its ecosystem implication P. Rivaro & C. Ianni 10.1016/j.dsr2.2024.105449
- A Phaeocystis bloom in the northern Beibu Gulf reflects nutrient-driven shifts in dominant phytoplankton taxa Z. Zhou et al. 10.1016/j.envpol.2024.125422
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- The microalgaPhaeocystis antarcticais tolerant to salinity and metal mixture toxicity interactions D. Koppel et al. 10.1039/D1EM00233C
- Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing M. Saito et al. 10.1021/acs.jproteome.8b00761
- Humic acid inhibits colony formation of the cyanobacterium Microcystis at high level of iron X. Ma et al. 10.1016/j.chemosphere.2021.130742
- Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures M. Saito et al. 10.5194/bg-21-4889-2024
- Metabarcoding analysis of microbiome dynamics during a Phaeocystis globosa bloom in the Beibu Gulf, China K. Gibson et al. 10.1016/j.hal.2022.102217
- Development of an Ocean Protein Portal for Interactive Discovery and Education M. Saito et al. 10.1021/acs.jproteome.0c00382
- Phaeocystis: A Global Enigma W. Smith & S. Trimborn 10.1146/annurev-marine-022223-025031
- Why Environmental Biomarkers Work: Transcriptome–Proteome Correlations and Modeling of Multistressor Experiments in the Marine Bacterium Trichodesmium N. Walworth et al. 10.1021/acs.jproteome.1c00517
- Structural and functional diversity of the microbiome during the Phaeocystis globosa winter bloom in the southern Yellow Sea of China Y. Xue et al. 10.1016/j.ibiod.2023.105617
- Pigment Characterization of the Giant-Colony-Forming HaptophytePhaeocystis globosain the Beibu Gulf Reveals Blooms of Different Origins J. Wang et al. 10.1128/aem.01654-21
- Genus-Wide Transcriptional Landscapes Reveal Correlated Gene Networks Underlying Microevolutionary Divergence in Diatoms N. Walworth et al. 10.1093/molbev/msad218
- Differential Gene Expression Supports a Resource‐Intensive, Defensive Role for Colony Production in the Bloom‐Forming Haptophyte, Phaeocystis globosa M. Mars Brisbin & S. Mitarai 10.1111/jeu.12727
- Differences Between Solitary Cells and Colonial Cells in the Heteromorphic Life Cycle of Phaeocystis globosa: Morphology, Physiology, and Transcriptome D. Liang et al. 10.1007/s11802-021-4684-5
- Southern Ocean Iron Limitation of Primary Production between Past Knowledge and Future Projections E. Bazzani et al. 10.3390/jmse11020272
- Springtime phytoplankton responses to light and iron availability along the western Antarctic Peninsula H. Joy‐Warren et al. 10.1002/lno.12035
- Iron and manganese availability drives primary production and carbon export in the Weddell Sea J. Balaguer et al. 10.1016/j.cub.2023.08.086
- Sustained Upwelling of Subsurface Iron Supplies Seasonally Persistent Phytoplankton Blooms Around the Southern Kerguelen Plateau, Southern Ocean C. Schallenberg et al. 10.1029/2018JC013932
39 citations as recorded by crossref.
- Spatial-Related Community Structure and Dynamics in Phytoplankton of the Ross Sea, Antarctica F. Bolinesi et al. 10.3389/fmars.2020.574963
- Impact of ocean acidification and high solar radiation on productivity and species composition of a late summer phytoplankton community of the coastal Western Antarctic Peninsula J. Heiden et al. 10.1002/lno.11147
- On the Relationship between a Novel Prorocentrum sp. and Colonial Phaeocystis antarctica under Iron and Vitamin B12 Limitation: Ecological Implications for Antarctic Waters F. Bolinesi et al. 10.3390/app10196965
- Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators M. Wu et al. 10.1038/s41467-019-11426-z
- Molecular Mechanisms for Iron Uptake and Homeostasis in Marine Eukaryotic Phytoplankton R. Lampe et al. 10.1146/annurev-micro-041222-023252
- Phaeocystis antarctica unusual summer bloom in stratified antarctic coastal waters (Terra Nova Bay, Ross Sea) O. Mangoni et al. 10.1016/j.marenvres.2019.05.012
- Haploid Helps Phaeocystis Globosa Distribute to Deeper Dim Water, as Evidenced by Growth and Photosynthetic Physiology J. Zhuang et al. 10.3389/fmars.2022.902330
- Iron and light limitation of phytoplankton growth off East Antarctica C. Vives et al. 10.1016/j.jmarsys.2022.103774
- Chasing iron bioavailability in the Southern Ocean: Insights from Phaeocystis antarctica and iron speciation M. Fourquez et al. 10.1126/sciadv.adf9696
- Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 –independent methionine synthase with widespread homologues D. Rao et al. 10.1073/pnas.2204075121
- Comparative transcriptomics reveals colony formation mechanism of a harmful algal bloom species Phaeocystis globosa S. Zhang et al. 10.1016/j.scitotenv.2020.137454
- Cloning and heterologous expression of a UDP-sugar-producing pyrophosphorylase gene from the harmful alga Phaeocystis globosa (Prymnesiophyceae) and its possible function in colony formation D. Liang et al. 10.1016/j.algal.2021.102441
- Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection B. Kolody et al. 10.1038/s41396-019-0472-2
- Global analysis of ocean phytoplankton nutrient limitation reveals high prevalence of co-limitation T. Browning & C. Moore 10.1038/s41467-023-40774-0
- Factors controlling the competition between <i>Phaeocystis</i> and diatoms in the Southern Ocean and implications for carbon export fluxes C. Nissen & M. Vogt 10.5194/bg-18-251-2021
- Deciphering Patterns of Adaptation and Acclimation in the Transcriptome of Phaeocystis antarctica to Changing Iron Conditions1 M. Rizkallah et al. 10.1111/jpy.12979
- Online Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase–Reversed Phase Liquid Chromatography High-Resolution Mass Spectrometry for Metaproteomics of Environmental and Microbiome Samples M. McIlvin & M. Saito 10.1021/acs.jproteome.1c00588
- Dissolved Domoic Acid Does Not Improve Growth Rates and Iron Content in Iron-Stressed Pseudo-Nitzschia subcurvata J. Geuer et al. 10.3389/fmars.2020.00478
- Chromosome-scale genome assembly reveals insights into the evolution and ecology of the harmful algal bloom species Phaeocystis globosa Scherffel N. Chen et al. 10.1016/j.isci.2024.110575
- Marked spatiotemporal variations in small phytoplankton structure in contrasted waters of the Southern Ocean (Kerguelen area) S. Irion et al. 10.1002/lno.11555
- Biogeochemistry of the Ross Sea and its ecosystem implication P. Rivaro & C. Ianni 10.1016/j.dsr2.2024.105449
- A Phaeocystis bloom in the northern Beibu Gulf reflects nutrient-driven shifts in dominant phytoplankton taxa Z. Zhou et al. 10.1016/j.envpol.2024.125422
- Trace Metal Substitution in Marine Phytoplankton F. Morel et al. 10.1146/annurev-earth-053018-060108
- The microalgaPhaeocystis antarcticais tolerant to salinity and metal mixture toxicity interactions D. Koppel et al. 10.1039/D1EM00233C
- Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing M. Saito et al. 10.1021/acs.jproteome.8b00761
- Humic acid inhibits colony formation of the cyanobacterium Microcystis at high level of iron X. Ma et al. 10.1016/j.chemosphere.2021.130742
- Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures M. Saito et al. 10.5194/bg-21-4889-2024
- Metabarcoding analysis of microbiome dynamics during a Phaeocystis globosa bloom in the Beibu Gulf, China K. Gibson et al. 10.1016/j.hal.2022.102217
- Development of an Ocean Protein Portal for Interactive Discovery and Education M. Saito et al. 10.1021/acs.jproteome.0c00382
- Phaeocystis: A Global Enigma W. Smith & S. Trimborn 10.1146/annurev-marine-022223-025031
- Why Environmental Biomarkers Work: Transcriptome–Proteome Correlations and Modeling of Multistressor Experiments in the Marine Bacterium Trichodesmium N. Walworth et al. 10.1021/acs.jproteome.1c00517
- Structural and functional diversity of the microbiome during the Phaeocystis globosa winter bloom in the southern Yellow Sea of China Y. Xue et al. 10.1016/j.ibiod.2023.105617
- Pigment Characterization of the Giant-Colony-Forming HaptophytePhaeocystis globosain the Beibu Gulf Reveals Blooms of Different Origins J. Wang et al. 10.1128/aem.01654-21
- Genus-Wide Transcriptional Landscapes Reveal Correlated Gene Networks Underlying Microevolutionary Divergence in Diatoms N. Walworth et al. 10.1093/molbev/msad218
- Differential Gene Expression Supports a Resource‐Intensive, Defensive Role for Colony Production in the Bloom‐Forming Haptophyte, Phaeocystis globosa M. Mars Brisbin & S. Mitarai 10.1111/jeu.12727
- Differences Between Solitary Cells and Colonial Cells in the Heteromorphic Life Cycle of Phaeocystis globosa: Morphology, Physiology, and Transcriptome D. Liang et al. 10.1007/s11802-021-4684-5
- Southern Ocean Iron Limitation of Primary Production between Past Knowledge and Future Projections E. Bazzani et al. 10.3390/jmse11020272
- Springtime phytoplankton responses to light and iron availability along the western Antarctic Peninsula H. Joy‐Warren et al. 10.1002/lno.12035
- Iron and manganese availability drives primary production and carbon export in the Weddell Sea J. Balaguer et al. 10.1016/j.cub.2023.08.086
Discussed (final revised paper)
Discussed (final revised paper)
Latest update: 14 Dec 2024
Short summary
Phaeocystis antarctica is an important phytoplankter of the Antarctic coastal environment where it dominates the early season bloom after sea ice retreat. Iron nutrition was found to be an important factor that results in Phaeocystis colony formation and a large restructuring of the proteome, including changes associated with the flagellate to colonial transition and adaptive responses to iron scarcity. Analysis of Phaeocystis proteins from the Ross Sea revealed the presence of both cell types.
Phaeocystis antarctica is an important phytoplankter of the Antarctic coastal environment where...
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