Articles | Volume 15, issue 17
Biogeosciences, 15, 5423–5436, 2018
Biogeosciences, 15, 5423–5436, 2018

Research article 13 Sep 2018

Research article | 13 Sep 2018

Greenhouse gas production in degrading ice-rich permafrost deposits in northeastern Siberia

Greenhouse gas production in degrading ice-rich permafrost deposits in northeastern Siberia
Josefine Walz1,2, Christian Knoblauch1,2, Ronja Tigges1, Thomas Opel3,4, Lutz Schirrmeister4, and Eva-Maria Pfeiffer1,2 Josefine Walz et al.
  • 1Institute of Soil Science, Universität Hamburg, 20146 Hamburg, Germany
  • 2Center for Earth System Research and Sustainability, Universität Hamburg, 20146 Hamburg, Germany
  • 3Permafrost Laboratory, Department of Geography, University of Sussex, Brighton, BN1 9RH, UK
  • 4Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, 14473 Potsdam, Germany

Correspondence: Josefine Walz (


Permafrost deposits have been a sink for atmospheric carbon for millennia. Thaw-erosional processes, however, can lead to rapid degradation of ice-rich permafrost and the release of substantial amounts of organic carbon (OC). The amount of the OC stored in these deposits and their potential to be microbially decomposed to the greenhouse gases carbon dioxide (CO2) and methane (CH4) depends on climatic and environmental conditions during deposition and the decomposition history before incorporation into the permafrost. Here, we examine potential greenhouse gas production as a result of degrading ice-rich permafrost deposits from three locations in the northeastern Siberian Laptev Sea region. The deposits span a period of about 55 kyr from the last glacial period and Holocene interglacial. Samples from all three locations were incubated under aerobic and anaerobic conditions for 134 days at 4 C. Greenhouse gas production was generally higher in deposits from glacial periods, where 0.2 %–6.1 % of the initially available OC was decomposed to CO2. In contrast, only 0.1 %–4.0 % of initial OC was decomposed in permafrost deposits from the Holocene and the late glacial transition. Within the deposits from the Kargin interstadial period (Marine Isotope Stage 3), local depositional environments, especially soil moisture, also affected the preservation of OC. Sediments deposited under wet conditions contained more labile OC and thus produced more greenhouse gases than sediments deposited under drier conditions. To assess the greenhouse gas production potentials over longer periods, deposits from two locations were incubated for a total of 785 days. However, more than 50 % of total CO2 production over 785 days occurred within the first 134 days under aerobic conditions, while 80 % were produced over the same period under anaerobic conditions, which emphasizes the nonlinearity of the OC decomposition processes. Methanogenesis was generally observed in active layer samples but only sporadically in permafrost samples and was several orders of magnitude smaller than CO2 production.

1 Introduction

Permafrost, i.e., ground that is at or below 0 C for at least two consecutive years (van Everdingen, 2005), may preserve organic matter (OM) for millennia (Ping et al., 2015). The current organic carbon (OC) pool of soils, refrozen thermokarst, and Holocene cover deposits in the top 3 m as well as sediments and deltaic deposits below 3 m in permafrost landscapes is estimated to be about 1300 Pg, of which about 800 Pg are perennially frozen (Hugelius et al., 2014). However, warming-induced environmental changes and permafrost degradation could lead to rapid thawing of substantial amounts of currently frozen OM, microbial decomposition of the thawed OM, and rising greenhouse gas fluxes to the atmosphere (Natali et al., 2015; Schuur et al., 2015). The effects of elevated atmospheric greenhouse gas concentrations and temperatures on processes in soils and sediments are expected to be most pronounced in near-surface layers (Schneider von Deimling et al., 2012). However, thermo-erosion of ice-rich permafrost, i.e., permafrost with more than 20 vol % ice (Brown et al., 1998), also enables deep thawing of several tens of meters (Schneider von Deimling et al., 2015).

Ice-rich permafrost deposits, also called ice complex deposits, accumulated in unglaciated Arctic lowlands. During cold stages, fine-grained organic-rich material of polygenetic origin was deposited on predominantly flat plains (Schirrmeister et al., 2013). The deposits are dissected by large ice wedges, which can amount for up to 60 vol % (Ulrich et al., 2014). The most prominent ice complex deposits, referred to as yedoma, accumulated during the late Pleistocene between approximately 55 and 13 ka before present (BP), i.e., during the Marine Isotope Stages (MIS) 3 and 2 (Schirrmeister et al., 2011). Age–depth correlations, however, indicate that at some locations the accumulation of yedoma material may have already started between 80 and 60 ka BP, i.e., during MIS 4 (Schirrmeister et al., 2002b). Locally, remnants of older ice complex deposits of both late MIS 7–early MIS 6 and MIS 5 age are also preserved (Schirrmeister et al., 2002a; Wetterich et al., 2016; Opel et al., 2017), but not studied yet in terms of greenhouse gas production.

The thickness of yedoma deposits in Siberia (Grosse et al., 2013) and Alaska (Kanevskiy et al., 2011) can reach more than 50 m. At the time of deposition, rapid sedimentation and freezing incorporated relatively undecomposed OM into the permafrost (Strauss et al., 2017). However, owing to the high ice content, yedoma deposits are highly susceptible to warming-induced environmental changes, erosion, and ground subsidence following permafrost thaw (e.g., Morgenstern et al., 2013). Only 30 % of the yedoma region (about 416 000 km2) is considered intact, while the other 70 % has already undergone some level of permafrost degradation (Strauss et al., 2013). Today, the whole yedoma domain stores 213–456 Pg of OC, of which 83–269 Pg is stored in intact yedoma and 169–240 Pg in thermokarst and refrozen taberal deposits (Zimov et al., 2006; Strauss et al., 2013, 2017; Hugelius et al., 2014; Walter Anthony et al., 2014). For an about 88 000 km2 area along the Bolshaya Chukochya and Alazeya River basins and the eastern parts of the Yana–Indigirka and Kolyma lowlands in northeastern Siberia, Shmelev et al. (2017) estimate the size of the total carbon pool in the upper 25 m to be 31.2 Pg, of which 3.7 Pg is stored in yedoma deposits. However, high spatial and temporal variability results in large uncertainties about how much OC will be exposed by degradation of ice-rich permafrost and how much of this OC can be microbially decomposed to the greenhouse gases carbon dioxide (CO2) or methane (CH4) after thaw.

In addition to the quantity of OC, its decomposability will influence how fast the OC in permafrost deposits can be transformed into CO2 or CH4 after thaw (MacDougall and Knutti, 2016; Knoblauch et al., 2018). Since plants are the main source of OM in soils, vegetation composition plays an important role for OM decomposability (Iversen et al., 2015). Furthermore, OM has undergone different degradation processes before being incorporated into permafrost depending on permafrost formation pathways (Waldrop et al., 2010; Harden et al., 2012). In epigenetic permafrost, that is permafrost aggradation through intermittent freezing after the material was deposited, OM has already undergone some level of transformation, and easily decomposable, labile OC compounds are decomposed and lost to the atmosphere prior to incorporation into the permafrost (Hugelius et al., 2012). In contrast, OM in syngenetically frozen yedoma, i.e., concurrent material deposition and permafrost aggradation, had little time to be transformed prior to freezing and may thus contain high amounts of labile OC, which may be quickly decomposed to greenhouse gases after thawing (Dutta et al., 2006). In this case, the amount and decomposability of the fossil OM is controlled by the OM source, i.e., predominantly vegetation, which in turn depends on paleoclimatic conditions (Andreev et al., 2011).

The decomposability of permafrost OM is often assessed based on OM degradation proxies, total OC (TOC) content, ratios of total organic carbon to total nitrogen (C  N), or stable carbon isotopes (δ13Corg) with contradictory results (Strauss et al., 2015; Weiss et al., 2016). Only few studies have measured CO2 and CH4 production potentials from Siberian yedoma deposits under laboratory conditions (Dutta et al., 2006; Zimov et al., 2006; Lee et al., 2012; Knoblauch et al., 2013, 2018). In this study, we present incubation data from late Pleistocene yedoma and Holocene interglacial deposits from three locations in northeastern Siberia. We hypothesize that OM deposited during glacial periods experienced little prefreezing transformation and thus provides a more suitable substrate for future microbial decomposition and post-thawing greenhouse gas production than Holocene deposits.

Figure 1Overview of the Laptev Sea region with the study locations at Muostakh Island (sample code MUO12), the Buor Khaya Peninsula (BK8) and Bol'shoy Lyakhovsky Island (L14).


2 Study region and sample material

Three locations in the Laptev Sea region in northeastern Siberia were studied (Fig. 1). The whole region is underlain by continuous permafrost reaching depths of 450–700 m onshore and 200–600 m offshore (Romanovskii et al., 2004), with ground temperatures of −11C for terrestrial permafrost (Drozdov et al., 2005) and −1C for submarine permafrost (Overduin et al., 2015). Long, cold winters and short, cool summers characterize the current climate. Mean annual (1971–2000) temperatures and precipitation sums are −13.3C and 266 mm at the central Laptev Sea coast (Tiksi, WMO station 21824) and −14.9C and 145 mm in the eastern Laptev Sea region (Mys Shalaurova, WMO station 21647, Bulygina and Razuvaev, 2012). Modern vegetation cover is dominated by erect dwarf shrub and in places by sedge, moss, low-shrub wetland vegetation or tussock sedge, dwarf shrub, or moss tundra vegetation (CAVM Team, 2003). A compilation of the regional stratigraphic scheme used in this work with paleoclimate and vegetation history is summarized in Table 1.

The first study location is on Muostakh Island (71.61 N, 129.96 E), an island in the Buor Khaya Bay 40 km east of Tiksi. Between 1951 and 2013, the area and volume of Muostakh Island, which is subject to major coastal erosion (up to −17 m a−1) and thaw subsidence, decreased by 24 % and 40 %, respectively (Günther et al., 2015). The entire sedimentary sequence of Muostakh Island (sample code MUO12) was sampled in three vertical subprofiles on the northeastern shore (Meyer et al., 2015). In the current study, we used 14 sediment samples from the entire MUO12 sequence between 0.5 and 15.6 m b.s. (meters below surface), which corresponds to 19.5 and 4.4 m a.s.l. (meters above sea level).

Table 1Compilation of the regional chronostratigraphy of the Laptev Sea region used in this work with paleoclimate (summer) and vegetation history based on an overview by Andreev et al. (2011) and references therein.

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The second study location is on the Buor Khaya Peninsula (71.42 N, 132.11 E). Thermokarst processes affect 85 % of the region, which resulted in more than 20 m of permafrost subsidence in some areas (Günther et al., 2013). Long-term (1969–2010) coastal erosion rates along the western coast of the Buor Khaya Peninsula are about −1 m a−1 (Günther et al., 2013). On top of the yedoma hill, approximately 100 m from the cliff edge, a 19.8 m long permafrost core (sample code BK8) was drilled (Grigoriev et al., 2013). Detailed cryolithological, geochemical, and geochronological data (Schirrmeister et al., 2017); palynological analysis (Zimmermann et al., 2017b); and lipid biomarker studies (Stapel et al., 2016) were previously published for the BK8 site. In the current study, 20 sediment samples spread evenly between the surface and 19.8 m b.s. (or 34 and 14.2 m a.s.l.) were analyzed, excluding an ice wedge between 3.2 and 8.5 m b.s.

The third sampling location is on Bol'shoy Lyakhovsky Island (73.34 N; 141.33 E), the southernmost island of the New Siberian Archipelago. Four cores (sample code L14) were drilled on the southern coast (Schwamborn and Schirrmeister, 2015). Core descriptions, geochronological data, and pollen and plant DNA analyses can be found in Zimmermann et al. (2017a), while biomarkers and pore water analysis are reported in Stapel et al. (2018). Based on previous stratigraphic studies from this location (e.g., Andreev et al., 2009; Wetterich et al., 2009, 2014) we focused on two cores, which represent the MIS 1–MIS 3 period investigated here. The first core, L14-05, was recovered from inside a thermokarst basin, 4 km west of the Zimov'e River mouth, with Holocene thermokarst deposits overlying thawed and refrozen taberal yedoma deposits (Wetterich et al., 2009). Five sediment samples between 0 and 7.9 m b.s. (11.5 and 3.6 m a.s.l.) were analyzed for the current study. The second core, L14-02, was taken on a yedoma hill about 1 km west of the Zimov'e River mouth. The entire core was 20.0 m long, including wedge ice below 10.9 m b.s. Five sediment samples from the top to a depth of 10.9 m b.s. (32.2–21.3 m a.s.l.) were incubated for the current study.

3 Methods

3.1 Geochemical characteristics

Gravimetric water contents were calculated as the weight difference between wet and dried (105 C) samples. pH values were measured in a suspension of 5 g thawed sediment in 12.5 mL distilled water (CG820, Schott AG, Mainz, Germany). For sediment chemical analyses, bulk samples were dried at 70 C and milled. Total carbon (TC) and total nitrogen (TN) contents were measured with an element analyzer (VarioMAX cube, Elementar Analysensysteme GmbH, Hanau, Germany), while TOC contents were measured with a liquiTOC II coupled to a solids module (Elementar Analysensysteme GmbH, Hanau, Germany). The δ13Corg values were measured with an isotope-ratio mass spectrometer (Delta V, Thermo Scientific, Dreieich, Germany) coupled to an elemental analyzer (Flash 2000, Thermo Scientific, Dreieich, Germany) after samples were treated with phosphoric acid to release inorganic carbon.

3.2 Incubation

Frozen samples were slowly thawed from −18 to 4 C over 48 h in a refrigerator, homogenized and divided into triplicates. Anaerobic incubations were prepared under a nitrogen atmosphere in a glove box. Approximately 15–30 g thawed sediment was weighed into glass bottles and sealed with rubber stoppers. Anaerobic samples were saturated with 5–20 mL of nitrogen-flushed, CO2-free distilled water, and the headspace was exchanged with molecular nitrogen. The headspace of aerobic incubation bottles was exchanged with synthetic air (20 % oxygen, 80 % nitrogen). We added enough molecular nitrogen and synthetic air to establish a slight overpressure inside each bottle. In occasional cases of negative pressure differences between headspace pressure and ambient pressure, we added 5–10 mL of molecular nitrogen to reestablish overpressure.

Samples from all three study locations were incubated for 134 days at 4 C. During this time, the headspace CO2 and CH4 concentrations were measured weekly to biweekly. The incubation of samples from the Buor Khaya Peninsula and Bol'shoy Lyakhovsky Island continued for 785 days and the gas concentrations were measured every 8–12 weeks. To determine the gas concentrations inside each bottle, 1 mL of headspace gas was removed by a syringe and injected into a gas chromatograph (GC 7890 Agilent Technologies, Santa Clara, USA) equipped with a 500 µL sample loop, a nickel catalyst to reduce CO2 to CH4, and a flame ionizing detector (FID). Gases were separated on a PorapakQ column with helium as carrier gas. If the headspace concentration of CO2 in aerobic incubation bottles approached 3 %, the headspace was again exchanged with synthetic air.

Figure 2Box plot of total organic carbon (TOC), total organic carbon to total nitrogen ratio (C  N), and δ13Corg values of permafrost deposits from the MUO12 sequence, the BK8 core, and the two L14 cores from the Holocene interglacial (MIS 1), including the late glacial transition (LGT) (n=12), the Sartan stadial (MIS 2) (n=6), and the Kargin interstadial (MIS 3) (n=27). The whiskers show the data range and the box indicates the interquartile range. The vertical line and square inside the boxes show the median and mean, respectively. The letters above the whiskers indicate statistically significant differences in geochemical characteristics between the deposits of different ages (Mann–Whitney test, p<0.016 for TOC and C  N, p<0.001 for δ13Corg).


The amount of gas in the headspace was calculated from the concentration in the headspace, headspace volume, incubation temperature, and pressure inside the bottle using the ideal gas law. The amount of gas dissolved in water was calculated from the gas concentration in the headspace, pressure inside the bottle, water content, pH, and gas solubility. Solubility for CO2 and CH4 in water at 4 C was calculated after Carroll et al. (1991) and Yamamoto et al. (1976), respectively. To account for the dissociation of carbonic acid in water at different pH values, we used dissociation constants from Millero et al. (2007).

Figure 3Depth profiles of total aerobic (a) and anaerobic (b) CO2 production per gram of organic carbon (g−1 OC) in sediment samples from the MUO12 sequence after 134 incubation days at 4 C for deposits from the Holocene interglacial (MIS 1), including the late glacial transition (LGT), the Sartan stadial (MIS 2), and the Kargin interstadial (MIS 3). Data are mean values (n=3) and error bars represent 1 standard deviation. Note the different scales. No CH4 production was observed during the 134-day incubation period.


3.3 Statistics

Differences in mean values were analyzed with the Kruskal–Wallis test followed by multiple post hoc Mann–Whitney tests with the Bonferroni adjustment for multiple group comparisons. We tested for differences between deposits from different periods as well as for differences between deposits from the same period but from different locations. In both cases, the number of post hoc comparisons was three, giving an adjusted significance level of 0.017. All statistical analyses were performed using MATLAB® (MATLAB and Statistics Toolbox Release 2015b, The MathWorks Inc., Natick, MA, USA).

4 Results

4.1 Chronostratigraphy and geochemical characteristics

The sedimentary sequence on Muostakh Island was divided into three sections, which were separated by two erosional contacts and sharply intersecting ice wedges (Meyer et al., 2015). Based on radiocarbon ages (Meyer et al., unpublished data), these sections could be separated into three periods (Fig. 3). Deposits from the uppermost section between 0.5 and 2.4 m b.s. were classified as Holocene deposits from the MIS 1 and deposits from the late glacial to early Holocene transition, confirmed by radiocarbon ages of 7.5 and 13.2 ka BP for samples at 1.3 and 2.4 m b.s., respectively. The middle section between 4 and 10 m b.s. yielded radiocarbon ages of 16.1–18.9 ka BP and were therefore classified as Sartan stadial deposits from the MIS 2. The lowermost section, between 11.3 and 15.6 m b.s., yielded radiocarbon ages of 41.6–45.9 ka BP and represents the MIS 3 Kargin interstadial.

Figure 4Depth profiles of total aerobic CO2 (a), anaerobic CO2 (b), and anaerobic CH4 (c) production per gram of organic carbon (g−1 OC) in sediment samples from the BK8 core after 134 (closed symbols) and 785 (open symbols) incubation days at 4 C for the active layer (AL), which is considered to be 0.5 m thick, and permafrost deposits from the Holocene interglacial (MIS 1), including the late glacial transition (LGT) and the Kargin interstadial (MIS 3). Data are mean values (n=3) and error bars represent 1 standard deviation. Note the different scales.


The BK8 core from the Buor Khaya Peninsula was subdivided into four sections (Fig. 4). The first section, between 0 and 0.5 m b.s., represents the seasonally thawed active layer. The subdivision of the permafrost deposits below the active layer was based on previously published radiocarbon and infrared-stimulated luminescence (IRSL) ages (Schirrmeister et al., 2017). Deposits from the second section, between 0.5 and 3.2 m b.s., yielded radiocarbon ages between 9.7 and 11.4 ka BP, which corresponds to the late glacial transition to the early Holocene. The third section, between 3.2 and 8.5 m b.s., consisted of an ice wedge, which was not sampled for the current study. The fourth section, between 8.5 and 18.9 m b.s., yielded infinite radiocarbon ages older than 50 ka BP. The additional IRSL ages of feldspar grains yielded deposition ages of about 45 ka BP. Thus, sediments from this section were classified as deposits from the Kargin interstadial.

The upper 0.5 m from both cores from Bol'shoy Lyakhovsky Island represent the active layer. Radiocarbon ages of the L14-05 core from the thermokarst basin ranged between 2.2 and 10.1 ka BP for the upper core section between 0–1.7 m b.s. and 51.2–54.6 ka BP for deposits below 5.8 m b.s. (Zimmermann et al., 2017a). Based on these ages, stratigraphic interpretations from a nearby outcrop (Wetterich et al., 2009), and the available palynological data (Zimmermann et al., 2017a), the L14-05 core was divided into two parts (Fig. 5). The upper part, between 0 and 5.5 m b.s., was deposited during the Holocene and late glacial transition, while deposits below 5.5 m b.s. originate from the Kargin interstadial. Deposits from the L14-02 core from the yedoma hill yielded radiocarbon ages between 33.1 and 62.8 ka BP, which corresponds to deposition during the MIS 3 Kargin interstadial.

Overall, the permafrost deposits showed a wide range in TOC contents, C  N, and δ13Corg (Fig. 2). Generally higher TOC contents and C  N were found in deposits from the Holocene and Kargin interstadial than in deposits from the Sartan stadial (Mann–Whitney test, p<0.017), while the δ13Corg values were significantly higher in Sartan stadial deposits (Mann–Whitney test, p<0.001).

Figure 5Depth profiles of total aerobic CO2 (a), anaerobic CO2 (b), and anaerobic CH4 (c) production per gram of organic carbon (g−1 OC) in sediment samples from the L14-05 (a–c), and L14-02 cores (d–f) after 134 (closed symbols) and 785 (open symbols) incubation days at 4 C for the active layer (AL), which is considered to be 0.5 m thick, and permafrost deposits from the Holocene interglacial (MIS 1) and the Kargin interstadial (MIS 3). Data are mean values (n=3) and error bars represent 1 standard deviation. Note the different scales.


4.2 Greenhouse gas production potentials

4.2.1 Muostakh Island

Based on the TOC content, CO2 production after 134 incubation days from sediment samples from the MUO12 sequence ranged between 4.8 and 60.7 mg CO2-C g−1 OC under aerobic conditions and between 0.5 and 20.9 mg CO2-C g−1 OC under anaerobic conditions (Fig. 3). Higher aerobic CO2 production was generally observed in the lowermost Kargin deposits between 11.3 and 15.6 m b.s. (Table 2), but elevated CO2 production was also observed at 1.6, 6, and 10 m b.s. Under anaerobic conditions, the highest production was observed at 6 m b.s., which was nearly twice as high as in most other samples. No methanogenesis was observed in any Muostakh Island samples over the 134-day incubation period.

Table 2Mean (±1 standard deviation) CO2 and CH4 production after 134 and 785 incubation days. Production after 785 days was not determined (n.d.) for the Muostakh Island sequence. MIS 2 deposits were not present in the sample material from the Buor Khaya Peninsula and Bol'shoy Lyakhovsky Island.

* Methanogenesis was only observed in two replicates.

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4.2.2 Buor Khaya Peninsula

After 134 incubation days, CO2 production in BK8 core samples ranged between 2.2 and 64.1 mg CO2-C g−1 OC aerobically and between 2.2 and 17.1 mg CO2-C g−1 OC anaerobically (Fig. 4), which is within the same range as production in samples from Muostakh Island over the same incubation period (Table 2). The highest production was observed in the active layer. Production then decreased sharply by between 0.5 and 3.2 m b.s. but increased again in Kargin interstadial deposits below the ice wedge. Methanogenesis was only observed in the active layer, but in much smaller quantities than anaerobic CO2 production.

Figure 6Total aerobic (a) and anaerobic (b) CO2-C production after 134 incubation days from permafrost deposits from the MUO12 sequence, the BK8 core, and the two L14 cores from the Holocene interglacial (MIS 1), including the late glacial transition (LGT) (n=22), the Sartan stadial (MIS 2) (n=15), and the Kargin interstadial (MIS 3) (n=50). The whiskers show the data range and the box indicates the interquartile range. The vertical line and square inside the boxes show the median and mean, respectively. The different letters indicate significant differences (Mann–Whitney test, p<0.016) between deposits from different periods.


To assess the decomposability of OC over longer periods, all BK8 core samples were incubated for a total of 785 days. After 785 incubation days, CO2 production ranged between 4.6 and 131.1 mg CO2-C g−1 OC under aerobic conditions and between 2.2 and 43.0 mg CO2-C g−1 OC under anaerobic conditions. CO2 production rates, however, decreased sharply within the first weeks of incubation. On average, 58 %±12 % of the aerobically and 86 %±24 % of the anaerobically produced CO2 after 785 incubation days was already produced within the first 134 days. In contrast, CH4 production in the active layer increased 30-fold between 134 and 785 incubation days. Additionally, two out of three replicates at 10 m b.s. also showed active methanogenesis between 134 and 785 days. The total CH4 production after 785 days accounted for 17 and 50 % of the total carbon production in those samples, respectively.

4.2.3 Bol'shoy Lyakhovsky Island

Aerobic CO2 production after 134 incubation days in samples from the L14 cores ranged between 3.7 and 18.9 mg CO2-C g−1 OC (Fig. 5). The mean aerobic CO2 production in all MIS 3 Kargin interstadial deposits from Bol'shoy Lyakhovsky Island was significantly lower (Mann–Whitney test, p<0.001) than CO2 production in MIS 3 deposits from Muostakh Island and the Buor Khaya Peninsula (Table 2). Anaerobic CO2 production in Kargin deposits from Bol'shoy Lyakhosvky Island ranged between 3.2 and 11.6 mg CO2-C g−1 OC, which was within the same range as production observed from the other two locations. No CH4 production was observed in any L14 samples after 134 days.

After 785 incubation days, aerobic and anaerobic CO2 production ranged between 11.0 and 55.2 mg CO2-C g−1 OC and between 3.0 and 27.0 mg CO2-C g−1 OC, respectively. Active methanogenesis was only observed in two out of three replicates from the active layer from the L14-05 core. However, CH4 production was an order of magnitude lower than anaerobic CO2 production in the same sample and also an order of magnitude smaller than CH4 production in the active layer from the Buor Khaya Peninsula.

4.3 Decomposability of permafrost OM deposited under different climatic regimes

Overall, permafrost OM deposited during the MIS 3 Kargin interstadial supported the highest greenhouse gas production (Fig. 6). After 134 days of aerobic incubation, 0.2 %–6.1 % of the initially available OC was decomposed to CO2. This was significantly more (Mann–Whitney test, p<0.001) than in deposits from the Holocene and late glacial transition, where production ranged between 0.4 % and 4.0 %. The aerobic CO2 production in MIS 2 Sartan stadial deposits ranged between 0.5 % and 4.2 %. Anaerobically, 3.3 times less CO2 was produced (Pearson correlation coefficient r=0.63, p<0.001). The lowest production was observed in Holocene and late glacial transition deposits, where 0.1 %–1.1 % of the OC was anaerobically decomposed to CO2. This was significantly less (Mann–Whitney test, p<0.01) than in yedoma deposits, where 0.4 %–2.1 % and 0.2 %–1.6 % of initial OC were decomposed in Sartan stadial and Kargin interstadial deposits, respectively.

5 Discussion

5.1 Organic matter decomposability

The ice-rich permafrost deposits of Muostakh Island, the Buor Khaya Peninsula, and Bol'shoy Lyakhovsky Island are typical for northeastern Siberia, and the geochemical OM characteristics (TOC, C  N, δ13Corg) were all within the range of other permafrost deposits in the region (Schirrmeister et al., 2011). However, a better understanding of the differences in OM decomposability is needed to estimate the contribution of thawing permafrost landscapes to future greenhouse gas fluxes.

The highest CO2 production potentials from permafrost samples in the BK8 core were observed below the ice wedge between 8.35 and 16 m b.s. (Fig. 3). For this core section, which was deposited during the MIS 3 Kargin interstadial (Schirrmeister et al., 2017), Zimmermann et al. (2017b) report a high taxonomic richness of vascular plants with high proportions of swamp and aquatic taxa, pointing towards a water-saturated environment at the time of deposition, likely a low-centered ice-wedge polygon. Furthermore, Stapel et al. (2016) report high concentrations of branched glycerol dialkyl glycerol tetraether (br-GDGT), a microbial membrane compound, at 10, 11.2, and 15 m b.s., indicative of a soil microbial community, which developed when the climate was relatively warm and wet. Together with higher TOC contents at these depths, this suggests accumulation of relatively undecomposed OM under anaerobic conditions, which can be quickly decomposed after thaw (de Klerk et al., 2011), resulting in higher CO2 production. In contrast, a lower abundance of swamp taxa and higher abundance of terrestrial taxa at 8.8 m b.s. and below 15 m b.s. (Zimmermann et al., 2017b), suggest that intermittently drier conditions existed. This resulted in accelerated OM decomposition under aerobic conditions prior to OM incorporation into the permafrost and therefore lower TOC contents as well as lower CO2 production potentials at these depths, as observed in this study.

Sediments above the ice wedge in the BK8 core showed similar TOC contents, C  N, and δ13Corg values compared to the rest of the core, but CO2 production was consistently low in this section. This ∼3 m long core section yielded radiocarbon ages of 11.4–10.1 ka BP (Schirrmeister et al., 2017), which corresponds to the late glacial–early Holocene transition. After the Last Glacial Maximum (LGM), temperatures were favorable for the increased microbial decomposition of active layer OM, which led to the preservation of comparatively stable OM fractions after the material was incorporated into the permafrost. If these sediments were to thaw again in the future, results from the current study suggest that the decomposability of the remaining OM will be comparatively low. However, deeper rooting, cryoturbation, and post-thaw leaching of labile OM from vegetation could stimulate the decomposition and greenhouse gas production from more stable OM through positive priming (Fontaine et al., 2007). Both the chemical structure (Di Lonardo et al., 2017) and the frequency of labile OM inputs (Fan et al., 2013) influence the size of the priming effect. For permafrost soils, it has also been shown that the priming effect is larger at lower temperatures (Walz et al., 2017). Thus, climatic conditions influence the vegetation composition and OM source on a regional level, but the local depositional environment as well as postdepositional processes likely also control the amount and decomposability of the OM that is presently incorporated in permafrost.

The first results of in situ CO2 fluxes from Muostakh Island were published by Vonk et al. (2012). Based on the downslope decrease in OC contents, they estimate that 66 % of the thawed yedoma OC can be decomposed to CO2 and released back to the atmosphere before the material is reburied in the Laptev Sea. This is an order of magnitude more than what the results from current incubation study suggest, where after 134 days only 0.4 %–6.0 % of the yedoma OC from Muostakh Island were aerobically decomposed to CO2. No further detailed palynological or microbial biomarker studies are yet available for the MUO12 sequence. The closest reference location is the comprehensive permafrost record at the Mamontovy Khayata section on the Bykovsky Peninsula (Andreev et al., 2002; Sher et al., 2005). Between 58 and 12 ka BP (Schirrmeister et al., 2002b), fine-grained material accumulated on the large flat foreland plain of the present-day Bykovsky Peninsula area that was exposed at a time of lower sea level (Grosse et al., 2007). Sea level rise after the last glacial period, coastal erosion, and marine ingression of thermokarst basins formed the Buor Khaya Bay and eventually separated Muostakh Island from the Bykovsky Peninsula (Grosse et al., 2007; Romanovskii et al., 2004). It is likely that the deposition regimes on Muostakh Island and the Buor Khaya Peninsula were similar to the regime at the Bykovsky Peninsula. This conclusion is also supported by similar OM decomposability. After 134 incubation days, the amount of aerobic and anaerobic CO2 production did not differ significantly (Mann–Whitney test, p=0.339) between MIS 3 Kargin deposits from Muostakh Island and the Buor Khaya Peninsula (Table 2), which suggests that the deposits formed under similar conditions. In contrast, aerobic CO2 production in MIS 3 deposits from Bol'shoy Lyakhovsky Island in the eastern Laptev Sea was nearly 3 times lower than that observed for Muostakh Island and the Buor Khaya Peninsula in the central Laptev Sea. Considerably lower temperatures and precipitation characterize the current climate on Bol'shoy Lyakhovsky Island. It is also likely that regional differences between the eastern and central Laptev Sea region would have affected the paleoclimate (Anderson and Lozhkin, 2001; Lozhkin and Anderson, 2011; Wetterich et al., 2011, 2014). Different summer temperatures, precipitation, thaw depth, and vegetation composition could explain regional differences in OM quantity and decomposability.

A distinctive feature of the Muostakh Island sequence is the preservation of MIS 2 Sartan deposits, which are only sparsely preserved in northeastern Siberia (Wetterich et al., 2011). Interestingly, mean aerobic CO2 production in Sartan deposits from Muostakh Island was lower than in Kargin deposits, but slightly higher under anaerobic conditions, but the difference was not statistically significant (Mann–Whitney test, p=0.205). The rapid deposition of 8 m thick comparatively coarse-grained material in just a few thousand years between 20 and 16 ka BP were unfavorable for the development of a stable land surface and the establishment of a vegetation cover comparable to the Kargin interstadial or Holocene (Meyer et al., unpublished data). Pollen analyses from the corresponding sections on the Bykovsky Peninsula (Andreev et al., 2002) and Kurungnakh Island in the Lena River delta (Schirrmeister et al., 2008; Wetterich et al., 2008) suggest relatively cold and dry summer conditions during this stadial with sparse vegetation. Relatively undecomposed OM was quickly buried, before it could be transformed to greenhouse gases.

5.2 Multiannual incubation

The 785-day incubation of permafrost samples from the Buor Khaya Peninsula and Bol'shoy Lyakhovsky Island revealed that 51 % of the aerobically and 83 % of the anaerobically produced CO2 was already produced within the first 134 incubation days, highlighting the nonlinearity of OM decomposition dynamics (Knoblauch et al., 2013; Schädel et al., 2014) and the importance of the labile OC pool in short-term incubations. Maximum CO2 production rates were generally reached within the first 100 incubation days. After the initial peak, CO2 production rates remained consistently low (median 23.3 µg CO2-C g−1 OC d−1 aerobically and 3.2 µg CO2-C g−1 OC d−1 anaerobically). These rates are within the range of other multiannual production rates from yedoma deposits in northeastern Siberia (Dutta et al., 2006; Knoblauch et al., 2013) and Alaska (Lee et al., 2012).

Assuming no new input of labile OM (e.g., from the current vegetation), decomposition rates are likely to remain low after the labile pool is depleted. Short-term greenhouse gas production and release from thawing ice-rich permafrost will therefore mainly depend on the size of the labile pool. A synthesis study of several incubation studies from high-latitude soils, including yedoma deposits, estimated the size of the labile OC pool to be generally less than 5 % of the TOC (Schädel et al., 2014). For yedoma deposits on nearby Kurungnakh Island in the Lena River delta, Knoblauch et al. (2013) estimated the size of the labile pool to be even smaller (less than 2 %). Considering the large slowly decomposing permafrost OC pool (Schädel et al., 2014), long-term decomposition rates are therefore likely to provide more reliable projections of future greenhouse gas production in degrading permafrost landscapes.

5.3 Methanogenesis

CH4 production from yedoma deposits, or the lack thereof, is a highly controversial topic in permafrost research (Rivkina et al., 1998; Treat et al., 2015; Knoblauch et al., 2018). In the current work, active methanogenesis was only observed in 2 out of 38 yedoma samples from the BK8 core. In those samples showing active methanogenesis, CH4 production continued to rise over the 785 incubation days, which is in contrast to anaerobic CO2 production, which decreased with increasing incubation time. Rising CH4 production rates indicate that methanogenic communities still grow in these samples and were not limited by substrate supply. Chemical pore water and bulk sediment analyses from the BK8 core showed that there are high concentrations of both free and OM-bound acetate present in yedoma deposits, indicating a high substrate potential for methanogenesis (Stapel et al., 2016). Knoblauch et al. (2018) showed that the small contribution of methanogenesis to overall anaerobic permafrost OM decomposition found in short-term incubation studies (Treat et al., 2015) is due to the absence of an active methanogenic community. On a multiannual timescale, methanogenic communities become active and equal amounts of CO2 and CH4 are produced from permafrost OM under anaerobic conditions. Under future climate warming and renewed thermokarst activity, high levels of CH4 production can be expected locally, but depend on favorable conditions such as above-zero temperatures and anaerobic conditions. It can be expected that the development of an active methanogenic community, e.g., by growth or downward migration of modern methanogenic organisms, will lead to elevated long-term CH4 production in these deposits (Knoblauch et al., 2018).

6 Conclusion

In this study, we investigated greenhouse gas production potential in degrading ice-rich permafrost deposits from three locations in northeastern Siberia. We hypothesized that the climatic conditions during deposition affected the amount and decomposability of preserved OM and thus greenhouse gas production potential after thawing. OM decomposability therefore needs to be interpreted against the paleoenvironmental background. It could be shown that yedoma deposits generally contained more labile OM than Holocene deposits. However, in addition to the regional climate conditions at the time of OM deposition, local depositional environments also influenced the amount and decomposability of the preserved fossil OM. Within the deposits of the MIS 3 Kargin interstadial, sediments deposited under wet and possibly anaerobic conditions produced more CO2 than sediments deposited under drier aerobic conditions. Further, deposits from the central Laptev Sea region produced 2–3 times more CO2 than deposits from the eastern Laptev Sea region. It is therefore likely that OM decomposability of the vast yedoma landscape cannot be generalized solely based on the stratigraphic position. Furthermore, it is expected that CH4 production will play a more prominent role after active methanogenic communities have established, since abundant substrates for methanogenesis were present.

Data availability

All data sets shown as well as the temporal evolution of CO2 and CH4 production over the whole incubation period are available at (last access: 13 August 2018; Walz et al., 2018).

Author contributions

JW and CK designed the study. TO collected sediment samples on Muostakh Island and LS collected cores from the Buor Khaya Peninsula and Bol'shoy Lyakhovsky Island. JW and RT performed the laboratory analyses, with guidance from CK and EMP. JW performed data analyses and wrote the paper with contributions from all authors.

Competing interests

The authors declare that they have no conflict of interest.


This research was supported by the German Ministry of Education and Research as part of the projects CarboPerm (grant no. 03G0836A, 03G0836B) and KoPf (grant no. 03F0764A). We further acknowledge the financial support through the German Research Foundation (DFG) to EMP and CK through the Cluster of Excellence “CliSAP” (EXC177), University of Hamburg, and to Thomas Opel (grant OP 217/3-1). We also thank the Russian and German participants of the drilling and sampling expeditions, especially Mikhail N. Grigoriev (Melnikov Permafrost Institute, Yakutsk), Hanno Meyer, and Pier Paul Overduin (both Alfred-Wegener-Institute, Potsdam). Additional thanks go to Georg Schwamborn (Alfred-Wegener-Institute, Potsdam) for his assistance with core subsampling and Birgit Schwinge (Institute of Soil Science, Hamburg) for her help in the laboratory. We are also immensely grateful for the two anonymous reviews on a previous version of this paper.

Edited by: Alexey V. Eliseev
Reviewed by: two anonymous referees


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Short summary
We investigate potential CO2 and CH4 production in degrading ice-rich permafrost in northeastern Siberia, deposited under different climatic conditions. With laboratory incubations, it could be shown that Late Pleistocene yedoma deposits generally produced more CO2 than Holocene deposits. Thus, OM decomposability needs to be interpreted against the paleoenvironmental background. However, OM decomposability cannot be generalized solely based on the stratigraphic position.
Final-revised paper