Burns, D. A., McDonnell, J. J., Hooper, R. P., Peters, N. E., Freer, J. E., Kendall, C., and Beven, K.: Quantifying contributions to storm runoff through end-member analysis and hydrologic measurements at the Panola Mountain Research Watershed (Georgia, USA), Hydrol. Process., 15, 1903–1924, https://doi.org/10.1002/hyp.246, 2001.
Blume, T., Zehe, E., and Bronstert, A.: Investigation of runoff generation in a pristine, poorly gauged catchment in the Chilean Andes II: Qualitative and quantitative use of tracers at three spatial scales, Hydrol. Process., 22, 3676–3688, https://doi.org/10.1002/hyp.6970, 2008.
Claesson, M. J., Wang, Q., O'Sullivian, O., Greene-Diniz, R., Cole, J. M., Ross, R. P., and O'Toole, P. W.: Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions, Nucleic Acids Res., 38, e200, https://doi.org/10.1093/nar/gkq873, 2010.
Davidov, Y. and Jurkevitch, E.: Diversity and evolution of
Bdellovibrio-and-like organisms (BALOs), reclassification of
Bacteriovorax starrii as
Peredibacter starrii gen. nov., comb. nov., and description of the
Bacteriovorax-
Peredibacter clade as
Bacteriovoracaceae fam. nov., Int. J. Syst. Evol. Microbiol., 54, 1439–1452, https://doi.org/10.1099/ijs.0.02978-0, 2004.
Dunne, T. and Black, R. D.: Partial area contributions to storm runoff in a small New England watershed, Water Resour. Res., 6, 1296–1311, https://doi.org/10.1029/WR006i005p01296, 1970.
Flynn, T. M., Sanford, R. A., and Bethke, C. M.: Attached and suspended microbial communities in a pristine confined aquifer, Water Resour. Res., 44, W07425, https://doi.org/10.1029/2007WR006633, 2008.
Garrity, G. M., Bell, J. A., and Lilburn, T.: Order I. Burkholderiales ord. nov., in: Bergey's Mannual of Systematic Bacteriology, edited by: Brenner, D. J., Krieg, N. R., Staley, J. T., and Garrity, G. M., 2nd Edn., Vol. 2, Springer Verlag, New York, 575–763, 2005a.
Garrity, G. M., Bell, J. A., and Lilburn, T.: Order VII. Bdellovibrionales ord. nov., in: Bergey's Mannual of Systematic Bacteriology, edited by: Brenner, D. J., Krieg, N. R., Staley, J. T., and Garrity, G. M., 2nd Edn., Vol. 2, Springer Verlag, New York, 1040–1058, 2005b.
Gupta, P., Noone, D., Galewsky, J., Sweeney, C., and Vaughn, B. H.: Demonstration of high-precision continuous measurements of water vapor isotopologues in laboratory and remote field deployments using wavelength-scanned cavity ring-down spectroscopy (WS-CRDS) technology, Rapid Commun. Mass Sp., 23, 2534–2542, https://doi.org/10.1002/rcm.4100, 2009.
Hamers, T., Smit, M. G. D., Murk, A. J., and Koeman, J. H.: Biological and chemical analysis of the toxic potency of pesticides in rainwater, Chemosphere, 45, 609–624, https://doi.org/10.1016/S0045-6535(01)00017-0, 2001.
Hunt, R. J., Borchardt, M. A., and Bradbury, K. R.: Viruses as groundwater tracers: using ecohydrology to characterize short travel times in aquifers, Ground Water, 52, 187–193, https://doi.org/10.1111/gwat.12158, 2014.
Kato, K., Nagaosa, K., Kimura, H., Katsuyama, C., Hama, K., Kunimaru, T., Tsunogai, U., and Aoki, K.: Unique distribution of deep groundwater bacteria constrained by geological setting, Environ. Microbiol. Rep., 1, 569–574, https://doi.org/10.1111/j.1758-2229.2009.00087.x, 2009.
Kato, K., Okumura, T., Segawa, T., Unno, T., Greenidge, D., Nishioka, T., Mori, K., Tosaka, H., and Nagaosa, K.: Unveiled groundwater flushing from the deep seafloor in Suruga Bay, Limnology, 16, 79–83, https://doi.org/10.1007/s10201-014-0445-0, 2015.
Kimura, H., Ishibashi, J. I., Masuda, H., Kato, K., and Hanada, S.: Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere, Appl. Environ. Microbiol., 73, 2110–2117, https://doi.org/10.1128/AEM.02800-06, 2007.
Klindworth, A., Pruesse, E., Schweer, T., Peplies, J., Christian, Q., Horn, M., and Glöckner, F. O.: Evaluation of general 16S ribosomal RNA gene PCR primers for classical and net-generation sequencing-based diversity studies, Nucleic Acids Res., 41, e1, https://doi.org/10.1093/nar/gks808, 2013.
McDonnell, J. J.: A rationale for old water discharge through macropores in a steep, humid catchment, Water Resour. Res., 26, 2821–2832, https://doi.org/10.1029/WR026i011p02821, 1990.
McDonnell, J. J., Bonell M, Stewart, M. K., and Pearce, A. J.: Deuterium variations in storm rainfall: Implications for stream hydrograph separation, Water Resour. Res., 26, 455–458, https://doi.org/10.1029/WR026i003p00455, 1990.
Nyyssönen, M., Hultman, J., Ahonen, L., Kukkonen, I., Paulin, L., Laine, P., Itävaara, M., and Auvinen, P.: Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield, ISME J., 8, 126–138, https://doi.org/10.1038/ismej.2013.125, 2014.
Pearce, A. J., Stewart, M. K., and Sklash, M. G.: Storm runoff generation in humid headwater catchments: 1. Where does water come from?, Water Resour. Res., 22, 1263–1272, https://doi.org/10.1029/WR022i008p01263, 1986.
Pernthaler, A., Pernthaler, J., and Amann, R.: Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria, Appl. Environ. Microbiol., 68, 3094-,3101, https://doi.org/10.1128/AEM.68.6.3094-3101.2002, 2002.
Porter, K. G. and Feig, Y. S.: The use of DAPI for identifying and counting aquatic microflora, Limnol. Oceanogr., 25, 943–948, https://doi.org/10.4319/lo.1980.25.5.0943, 1980.
Segawa, T., Sugiyama, A., Kinoshita, T., Sohrin, R., Nakano, T., Nagaosa, K., Greenidge, D., and Kato, K.: Microbes in groundwater of a volcanic mountain, Mt. Fuji; 16S rDNA phylogenetic analysis as a possible indicator for the transport routes of groundwater, Geomicrobiol. J., 32, 677–688, https://doi.org/10.1080/01490451.2014.991811, 2015.
Silliman, S. E. and Booth, D. F.: Analysis of time-series measurements of sediment temperature for identification of gaining vs losing portions of Juday-creek, Indiana, J. Hydrol., 146, 131–148, https://doi.org/10.1016/0022-1694(93)90273-C, 1993.
Somerville, C. C., Knight, I. T., Straube, W. L., and Colwell, R. R.: Simple, rapid method for direct isolation of nucleic-acids from aquatic environments, Appl. Environ. Microbiol., 55, 548–554, 1989.
Stahl, D. A. and Amann, R. I.: Development and application of nucleic acid probes, in: Nucleic acid techniques in bacterial systematics, edited by: Stackebrandt, E. and Goodfellow, M., Wiley, J., John Wiley & Sons Ltd., Chichester, 205–248, 1991.
Takahashi, S., Tomita, J., Nishioka, K., Hisada, T., and Nishijima, M.: Development of a prokaryotic universal primer for simultaneous analysis of
Bacteria and
Archaea using next-generation sequencing, PLoS One, 9, e105592, https://doi.org/10.1371/journal.pone.0105592, 2014.
Teira, E., Reinthaler, T., Pernthaler, A., Pernthaler, J., and Herndl, G. J.: Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean, Appl. Environ. Microbiol., 70, 4411–4414, https://doi.org/10.1128/AEM.70.7.4411-4414.2004, 2004.
Tekleab, S., Wenninger, J., and Uhlenbrook, S.: Characterisation of stable isotopes to identify residence times and runoff components in two meso-scale catchments in the Abay/Upper Blue Nile basin, Ethiopia, Hydrol. Earth Syst. Sci., 18, 2415–2431, https://doi.org/10.5194/hess-18-2415-2014, 2014.
Tosaki, Y., Tase, N., Sasa, K., Takahashi, T., and Nagashima, Y.: Estimation of groundwater residence time using the
36Cl bomb pulse, Ground Water, 49, 891–902, https://doi.org/10.1111/j.1745-6584.2010.00795.x, 2011.
Tsuchi, R.: Groundwater and springs of Fuji Volcano, Japan, in: Fuji Volcano, Yamanashi Institute of Environmental Sciences, Yamanashi, edited by: Aramaki, S., Fujii, T. Nakada, S., and Miyaji, N., Japan, 375–387, 2007.
Tsuya, H.: 1:50,000 Geologic map of Mt. Fuji, Geological Survey of Japan, 1968.
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R.: Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol. 73, 5261–5267, https://doi.org/10.1128/AEM.00062-07, 2007.
Watanabe, K., Takebe, Y., Sode, N., Igarashi, Y., Takahashi, H., and Dokiya, Y.: Fog and rain water chemistry at Mt. Fuji: A case study during the September 2002 campaign, Atmos. Res., 82, 652–662, https://doi.org/10.1016/j.atmosres.2006.02.021, 2006.
Wels, C., Cornett, R. J., and Lazerte, B. D.: Hydrograph separation – A comparison of geochemical and isotopic tracers, J. Hydrol., 122, 253–274, https://doi.org/10.1016/0022-1694(91)90181-G, 1991.
Yasuhara, M., Kazahaya, K., and Marui, A.: An Isotopic study on where, when, and how groundwater is recharged in Fuji volcano, central Japan, in: Fuji Volcano, Yamanashi Institute of Environmental Sciences, edited by: Yamanashi, Aramaki, S., Fujii, T., Nakata, F., and Miyaji, N., Japan, 389–405, 2007.
Zhou, Y., Kellermann, C., and Griebler, C.: Spatio-temporal patterns of microbial communities in a hydrologically dynamic pristine aquifer, FEMS Microbiol. Ecol., 81, 230–242, https://doi.org/10.1111/j.1574-6941.2012.01371.x, 2012.
