Articles | Volume 18, issue 3
https://doi.org/10.5194/bg-18-1185-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-18-1185-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Denitrification in soil as a function of oxygen availability at the microscale
Helmholtz Centre for Environmental Research – UFZ, Department of Soil
System Sciences, Theodor-Lieser Str. 4, 06120 Halle, Germany
Bernd Apelt
Helmholtz Centre for Environmental Research – UFZ, Department of Soil
System Sciences, Theodor-Lieser Str. 4, 06120 Halle, Germany
Hans-Jörg Vogel
Helmholtz Centre for Environmental Research – UFZ, Department of Soil
System Sciences, Theodor-Lieser Str. 4, 06120 Halle, Germany
Reinhard Well
Thünen Institute of Climate-Smart Agriculture, Bundesallee 65,
38116 Braunschweig, Germany
Gi-Mick Wu
Helmholtz Centre for Environmental Research – UFZ, PACE,
Permoserstraße 15, 04318 Leipzig, Germany
Steffen Schlüter
Helmholtz Centre for Environmental Research – UFZ, Department of Soil
System Sciences, Theodor-Lieser Str. 4, 06120 Halle, Germany
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Cited
87 citations as recorded by crossref.
- Evaluating nitrate removal and travel times in a bare deciduous forest soil through a column tracer experiment M. Cattry et al.
- A soil-specific model to predict N2O emissions from laboratory and field experiments B. Chang et al.
- Harvesting reshapes greenhouse gas exchange in reservoir drawdown soils via soil state control and context-dependent microbial functions X. Liu et al.
- Determining N2O and N2 fluxes in relation to winter wheat and sugar beet growth and development using the improved 15N gas flux method on the field scale J. Eckei et al.
- Pore distances of particulate organic matter predict N2O emissions from intact soil at moist conditions P. Ortega-Ramírez et al.
- Soil macropore structure plays divergent roles in fresh and decomposed particulate organic matter T. Ding et al.
- A meta-analysis to disentangle the effects of land management on soil denitrification A. Wiedenfeld et al.
- Strategies for mitigating N2O and N2 emissions from an intensive sugarcane cropping system J. Friedl et al.
- Removal of nitrate and phosphate from runoff by near-stream soils under future climate scenarios J. Clements & C. Hodges
- Spatial distribution, speciation, and release behavior of exogenous copper in soil aggregates: The role of aggregate structural reorganization Z. Xiao et al.
- Maize root growth, oxygen and N availability drive formation of N2O hotspots in soil P. Rummel et al.
- Methane and nitrous oxide emissions from puddled transplanted rice (Oryza sativa L.) fields as influenced by nitrogen management and IoT sensor based irrigation scheduling B. Debnath et al.
- Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification M. Lucas et al.
- Soil dependence of biochar composts in mitigating greenhouse gas emissions: An overlooked biophysical mechanism J. Hu et al.
- Measuring Nitrate Leaching in the Vadose Zone of Loess Soils—Comparison of Batch Extraction and Centrifugation D. Fraters et al.
- Reductions in nitrous oxide emissions in diverse crop rotations linked to changes in prokaryotic community structure M. Zong et al.
- A new modeling approach for denitrification taking internal chemical gradients into account J. Schulze et al.
- Computed tomography scanning revealed macropore-controlled N2O emissions under long-term tillage and cover cropping practices J. Dhaliwal et al.
- Consider the Anoxic Microsite: Acknowledging and Appreciating Spatiotemporal Redox Heterogeneity in Soils and Sediments E. Lacroix et al.
- Isotopomeric Peak Assignment for N2O in Cross-Labeling Experiments by Fiber-Enhanced Raman Multigas Spectroscopy A. Blohm et al.
- N2O flux dynamics and production pathways modulated by soil organic matter and litter turnover P. Rummel et al.
- Organic matter composition and stability in estuarine wetlands depending on soil salinity L. Wu et al.
- Effect of preceding integrated and organic farming on 15N recovery and the N balance, including emissions of NH3, N2O, and N2 and leaching of NO3− F. Khan et al.
- Understanding the Impact of Liquid Organic Fertilisation and Associated Application Techniques on N2, N2O and CO2 Fluxes from Agricultural Soils B. Grosz et al.
- Lysimeter-based full fertilizer 15N balances corroborate direct dinitrogen emission measurements using the 15N gas flow method I. Yankelzon et al.
- Impact of Agricultural Activities on Climate Change: A Review of Greenhouse Gas Emission Patterns in Field Crop Systems Y. Xing & X. Wang
- Root-rhizosphere-soil interactions in biopores A. Wendel et al.
- Microscale heterogeneity controls macroscopic soil heterotrophic respiration by regulating resource availability and environmental stress Z. Yan et al.
- What is the most relevant soil structure parameter to describe field-measured N2O emissions? E. Maillet et al.
- Modeling Denitrification: Can We Report What We Don't Know? B. Grosz et al.
- KGML-ag: a modeling framework of knowledge-guided machine learning to simulate agroecosystems: a case study of estimating N2O emission using data from mesocosm experiments L. Liu et al.
- Opportunities and limits in imaging microorganisms and their activities in soil microhabitats C. Védère et al.
- Distribution of Mn Oxidation States in Grassland Soils and Their Relationships with Soil Pores A. Kravchenko et al.
- Very fine roots differ among switchgrass (Panicum virgatum L.) cultivars and differentially affect soil pores and carbon processes J. Lee et al.
- How to adequately represent biological processes in modeling multifunctionality of arable soils H. Vogel et al.
- Cover crop residue decomposition triggered soil oxygen depletion and promoted nitrous oxide emissions F. Lussich et al.
- Identifying soil N2O sources by combining laboratory experiments with process-based models Z. Yan et al.
- Detection of negative consequences of traffic on subsoil properties depends on measurement type and scale: The case of a Calcaric Chernozem M. Fouladidorhani et al.
- Soil redox maps: assessment of small field-scale redox zonation by Mn and Fe oxide-coated IRIS films K. Dorau et al.
- Vegetable Productivity, Soil Physicochemical and Biochemical Properties, and Microbiome in Response to Organic Substitution in an Intensive Greenhouse Production System X. Liu et al.
- The anaerobic soil volume as a controlling factor of denitrification: a review S. Schlüter et al.
- Microplastic polymer properties as deterministic factors driving terrestrial plastisphere microbiome assembly and succession in the field S. Rohrbach et al.
- Micro on a macroscale: relating microbial-scale soil processes to global ecosystem function D. Smercina et al.
- Evaluation of greenhouse gas emissions from a biogas plant in Korea G. Park et al.
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al.
- Controlling matric potential in microfluidics to examine microbial dynamics in unsaturated porous media S. Franklin et al.
- Land-use change simplifies microbiome association networks despite limited diversity changes in river sandbar soils Z. Xiang et al.
- Amplitude and frequency of wetting and drying cycles drive N2 and N2O emissions from a subtropical pasture J. Friedl et al.
- Nitrosospira cluster 3 lineage of AOB and nirK of Rhizobiales respectively dominated N2O emissions from nitrification and denitrification in organic and chemical N fertilizer treated soils M. Chen et al.
- Soil aeration and redox potential as function of pore connectivity unravelled by X‐ray microtomography imaging K. Dorau et al.
- Bacterial N2O mitigation potential in soil-based systems and liquid cultures: a comprehensive meta-analysis S. Zhou et al.
- The distribution of particulate organic matter in the heterogeneous soil matrix - Balancing between aerobic respiration and denitrification M. Lucas et al.
- Nitrous oxide production and isotopomer composition by fungi isolated from salt marsh sediments B. Lazo-Murphy et al.
- Moderate effects of distance to air-filled macropores on denitrification potentials in soils H. van Dijk et al.
- An open Soil Structure Library based on X-ray CT data U. Weller et al.
- Impact of liming and maize residues on N2O and N2 fluxes in agricultural soils: an incubation study L. Pfülb et al.
- Hybrid pathways of denitrification drive N2O but not N2 emissions from an acid-sulphate sugarcane soil R. Kirkby et al.
- Soil compaction raises nitrous oxide emissions in managed agroecosystems. A review M. Pulido-Moncada et al.
- Decoupling microbial iron reduction from anoxic microsite formation in oxic sediments: a microscale investigation through microfluidic models G. Ceriotti et al.
- Soil Nitrogen Transformation Pathways Shift Following Deep Tillage in Coastal Wetlands Invaded by Spartina alterniflora J. Gao et al.
- Organic fertilization under conservation tillage enhances biopore formation and particulate organic matter accumulation via fraction-specific pore relationships in a Vertisol T. Ding et al.
- The reducing effect of aglime on N2O and CO2 emissions balance from an acidic soil: A study on intact soil cores C. Rousset et al.
- Exploring microscale heterogeneity as a driver of biogeochemical transformations and gas transport in peat L. Kohl et al.
- Soil pore architecture and rhizosphere legacy define N2O production in root detritusphere K. Kim et al.
- Denitrification in Agricultural Soils – Integrated control and Modelling at various scales (DASIM) K. Kleineidam et al.
- An Innovative Prototype to Measure Carbon Dioxide, Ethylene, and Nitric and Nitrous Oxides in the Soil Air R. Kormann et al.
- A holistic perspective on soil architecture is needed as a key to soil functions H. Vogel et al.
- Short-term effect of liquid organic fertilisation and application methods on N2, N2O and CO2 fluxes from a silt loam arable soil B. Grosz et al.
- Microplastics in agricultural soils: The role of soil texture in modulating oxygen diffusivity and soil respiration J. Nuñez et al.
- Evaluation of denitrification and decomposition from three biogeochemical models using laboratory measurements of N2, N2O and CO2 B. Grosz et al.
- Resilience of ecosystem service delivery in grasslands in response to single and compound extreme weather events R. Dodd et al.
- Impact of different soil erosion levels on gross N transformation processes and gaseous N losses: An incubation study J. Schoof et al.
- Soil organic carbon mineralization is controlled by the application dose of exogenous organic matter O. Mendoza et al.
- Subsoiling reduces N2O emissions by altering the relative gas diffusivity, O2 status and microbial communities in grazed pasture soil J. Liu et al.
- Responses of hydrology-driven soil carbon and nitrogen losses to rock fragment content under different rainfall scenarios Y. Wang et al.
- Increased N2O emissions by the soil nematode community cannot be fully explained by enhanced mineral N availability J. Hu et al.
- Microscale carbon distribution around pores and particulate organic matter varies with soil moisture regime S. Schlüter et al.
- Oxic microbial ferrihydrite reduction rates of Shewanella oneidensis and the potential for Fe mobilization in oxic sediments G. Ceriotti et al.
- Wetland soil history shapes microbial community composition, while hydrologic disturbance alters greenhouse gas fluxes R. Bledsoe et al.
- Assessment of exurban expansion on water quality in Rock Creek of the Yellowstone River in southcentral Montana, USA D. Arthun & G. Zaimes
- Wetting and drainage cycles in two New Zealand soil types: Effects on relative gas diffusivity and N2O emissions C. Rousset et al.
- Nitrate removal rates, isotopic fractionation, and denitrifying bacteria in a woodchip-based permeable reactive barrier system: a long-term column experiment A. Buyanjargal et al.
- Micron-scale spatial patterns of manganese oxidation states and acid phosphatase in soils under annual row crops and a native plant community J. O’Sullivan et al.
- Modeling of dual-permeability gas and solute reactive transport in macroporous agricultural soils with a focus on GHG cycling and emissions M. Jia et al.
- 42 Years of straw incorporation drive macroaggregation, enhancing macropores and POM in a Vertisol: Insights from X-ray μCT Z. Guo et al.
- Soil pore network effects on the fate of nitrous oxide as influenced by soil compaction, depth and water potential M. Pulido-Moncada et al.
- A direct method to determine gross N<sub>2</sub>O reduction potential: Downscaling soil mass to constrain the reduction hotspots R. Shingubara et al.
87 citations as recorded by crossref.
- Evaluating nitrate removal and travel times in a bare deciduous forest soil through a column tracer experiment M. Cattry et al.
- A soil-specific model to predict N2O emissions from laboratory and field experiments B. Chang et al.
- Harvesting reshapes greenhouse gas exchange in reservoir drawdown soils via soil state control and context-dependent microbial functions X. Liu et al.
- Determining N2O and N2 fluxes in relation to winter wheat and sugar beet growth and development using the improved 15N gas flux method on the field scale J. Eckei et al.
- Pore distances of particulate organic matter predict N2O emissions from intact soil at moist conditions P. Ortega-Ramírez et al.
- Soil macropore structure plays divergent roles in fresh and decomposed particulate organic matter T. Ding et al.
- A meta-analysis to disentangle the effects of land management on soil denitrification A. Wiedenfeld et al.
- Strategies for mitigating N2O and N2 emissions from an intensive sugarcane cropping system J. Friedl et al.
- Removal of nitrate and phosphate from runoff by near-stream soils under future climate scenarios J. Clements & C. Hodges
- Spatial distribution, speciation, and release behavior of exogenous copper in soil aggregates: The role of aggregate structural reorganization Z. Xiao et al.
- Maize root growth, oxygen and N availability drive formation of N2O hotspots in soil P. Rummel et al.
- Methane and nitrous oxide emissions from puddled transplanted rice (Oryza sativa L.) fields as influenced by nitrogen management and IoT sensor based irrigation scheduling B. Debnath et al.
- Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification M. Lucas et al.
- Soil dependence of biochar composts in mitigating greenhouse gas emissions: An overlooked biophysical mechanism J. Hu et al.
- Measuring Nitrate Leaching in the Vadose Zone of Loess Soils—Comparison of Batch Extraction and Centrifugation D. Fraters et al.
- Reductions in nitrous oxide emissions in diverse crop rotations linked to changes in prokaryotic community structure M. Zong et al.
- A new modeling approach for denitrification taking internal chemical gradients into account J. Schulze et al.
- Computed tomography scanning revealed macropore-controlled N2O emissions under long-term tillage and cover cropping practices J. Dhaliwal et al.
- Consider the Anoxic Microsite: Acknowledging and Appreciating Spatiotemporal Redox Heterogeneity in Soils and Sediments E. Lacroix et al.
- Isotopomeric Peak Assignment for N2O in Cross-Labeling Experiments by Fiber-Enhanced Raman Multigas Spectroscopy A. Blohm et al.
- N2O flux dynamics and production pathways modulated by soil organic matter and litter turnover P. Rummel et al.
- Organic matter composition and stability in estuarine wetlands depending on soil salinity L. Wu et al.
- Effect of preceding integrated and organic farming on 15N recovery and the N balance, including emissions of NH3, N2O, and N2 and leaching of NO3− F. Khan et al.
- Understanding the Impact of Liquid Organic Fertilisation and Associated Application Techniques on N2, N2O and CO2 Fluxes from Agricultural Soils B. Grosz et al.
- Lysimeter-based full fertilizer 15N balances corroborate direct dinitrogen emission measurements using the 15N gas flow method I. Yankelzon et al.
- Impact of Agricultural Activities on Climate Change: A Review of Greenhouse Gas Emission Patterns in Field Crop Systems Y. Xing & X. Wang
- Root-rhizosphere-soil interactions in biopores A. Wendel et al.
- Microscale heterogeneity controls macroscopic soil heterotrophic respiration by regulating resource availability and environmental stress Z. Yan et al.
- What is the most relevant soil structure parameter to describe field-measured N2O emissions? E. Maillet et al.
- Modeling Denitrification: Can We Report What We Don't Know? B. Grosz et al.
- KGML-ag: a modeling framework of knowledge-guided machine learning to simulate agroecosystems: a case study of estimating N2O emission using data from mesocosm experiments L. Liu et al.
- Opportunities and limits in imaging microorganisms and their activities in soil microhabitats C. Védère et al.
- Distribution of Mn Oxidation States in Grassland Soils and Their Relationships with Soil Pores A. Kravchenko et al.
- Very fine roots differ among switchgrass (Panicum virgatum L.) cultivars and differentially affect soil pores and carbon processes J. Lee et al.
- How to adequately represent biological processes in modeling multifunctionality of arable soils H. Vogel et al.
- Cover crop residue decomposition triggered soil oxygen depletion and promoted nitrous oxide emissions F. Lussich et al.
- Identifying soil N2O sources by combining laboratory experiments with process-based models Z. Yan et al.
- Detection of negative consequences of traffic on subsoil properties depends on measurement type and scale: The case of a Calcaric Chernozem M. Fouladidorhani et al.
- Soil redox maps: assessment of small field-scale redox zonation by Mn and Fe oxide-coated IRIS films K. Dorau et al.
- Vegetable Productivity, Soil Physicochemical and Biochemical Properties, and Microbiome in Response to Organic Substitution in an Intensive Greenhouse Production System X. Liu et al.
- The anaerobic soil volume as a controlling factor of denitrification: a review S. Schlüter et al.
- Microplastic polymer properties as deterministic factors driving terrestrial plastisphere microbiome assembly and succession in the field S. Rohrbach et al.
- Micro on a macroscale: relating microbial-scale soil processes to global ecosystem function D. Smercina et al.
- Evaluation of greenhouse gas emissions from a biogas plant in Korea G. Park et al.
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al.
- Controlling matric potential in microfluidics to examine microbial dynamics in unsaturated porous media S. Franklin et al.
- Land-use change simplifies microbiome association networks despite limited diversity changes in river sandbar soils Z. Xiang et al.
- Amplitude and frequency of wetting and drying cycles drive N2 and N2O emissions from a subtropical pasture J. Friedl et al.
- Nitrosospira cluster 3 lineage of AOB and nirK of Rhizobiales respectively dominated N2O emissions from nitrification and denitrification in organic and chemical N fertilizer treated soils M. Chen et al.
- Soil aeration and redox potential as function of pore connectivity unravelled by X‐ray microtomography imaging K. Dorau et al.
- Bacterial N2O mitigation potential in soil-based systems and liquid cultures: a comprehensive meta-analysis S. Zhou et al.
- The distribution of particulate organic matter in the heterogeneous soil matrix - Balancing between aerobic respiration and denitrification M. Lucas et al.
- Nitrous oxide production and isotopomer composition by fungi isolated from salt marsh sediments B. Lazo-Murphy et al.
- Moderate effects of distance to air-filled macropores on denitrification potentials in soils H. van Dijk et al.
- An open Soil Structure Library based on X-ray CT data U. Weller et al.
- Impact of liming and maize residues on N2O and N2 fluxes in agricultural soils: an incubation study L. Pfülb et al.
- Hybrid pathways of denitrification drive N2O but not N2 emissions from an acid-sulphate sugarcane soil R. Kirkby et al.
- Soil compaction raises nitrous oxide emissions in managed agroecosystems. A review M. Pulido-Moncada et al.
- Decoupling microbial iron reduction from anoxic microsite formation in oxic sediments: a microscale investigation through microfluidic models G. Ceriotti et al.
- Soil Nitrogen Transformation Pathways Shift Following Deep Tillage in Coastal Wetlands Invaded by Spartina alterniflora J. Gao et al.
- Organic fertilization under conservation tillage enhances biopore formation and particulate organic matter accumulation via fraction-specific pore relationships in a Vertisol T. Ding et al.
- The reducing effect of aglime on N2O and CO2 emissions balance from an acidic soil: A study on intact soil cores C. Rousset et al.
- Exploring microscale heterogeneity as a driver of biogeochemical transformations and gas transport in peat L. Kohl et al.
- Soil pore architecture and rhizosphere legacy define N2O production in root detritusphere K. Kim et al.
- Denitrification in Agricultural Soils – Integrated control and Modelling at various scales (DASIM) K. Kleineidam et al.
- An Innovative Prototype to Measure Carbon Dioxide, Ethylene, and Nitric and Nitrous Oxides in the Soil Air R. Kormann et al.
- A holistic perspective on soil architecture is needed as a key to soil functions H. Vogel et al.
- Short-term effect of liquid organic fertilisation and application methods on N2, N2O and CO2 fluxes from a silt loam arable soil B. Grosz et al.
- Microplastics in agricultural soils: The role of soil texture in modulating oxygen diffusivity and soil respiration J. Nuñez et al.
- Evaluation of denitrification and decomposition from three biogeochemical models using laboratory measurements of N2, N2O and CO2 B. Grosz et al.
- Resilience of ecosystem service delivery in grasslands in response to single and compound extreme weather events R. Dodd et al.
- Impact of different soil erosion levels on gross N transformation processes and gaseous N losses: An incubation study J. Schoof et al.
- Soil organic carbon mineralization is controlled by the application dose of exogenous organic matter O. Mendoza et al.
- Subsoiling reduces N2O emissions by altering the relative gas diffusivity, O2 status and microbial communities in grazed pasture soil J. Liu et al.
- Responses of hydrology-driven soil carbon and nitrogen losses to rock fragment content under different rainfall scenarios Y. Wang et al.
- Increased N2O emissions by the soil nematode community cannot be fully explained by enhanced mineral N availability J. Hu et al.
- Microscale carbon distribution around pores and particulate organic matter varies with soil moisture regime S. Schlüter et al.
- Oxic microbial ferrihydrite reduction rates of Shewanella oneidensis and the potential for Fe mobilization in oxic sediments G. Ceriotti et al.
- Wetland soil history shapes microbial community composition, while hydrologic disturbance alters greenhouse gas fluxes R. Bledsoe et al.
- Assessment of exurban expansion on water quality in Rock Creek of the Yellowstone River in southcentral Montana, USA D. Arthun & G. Zaimes
- Wetting and drainage cycles in two New Zealand soil types: Effects on relative gas diffusivity and N2O emissions C. Rousset et al.
- Nitrate removal rates, isotopic fractionation, and denitrifying bacteria in a woodchip-based permeable reactive barrier system: a long-term column experiment A. Buyanjargal et al.
- Micron-scale spatial patterns of manganese oxidation states and acid phosphatase in soils under annual row crops and a native plant community J. O’Sullivan et al.
- Modeling of dual-permeability gas and solute reactive transport in macroporous agricultural soils with a focus on GHG cycling and emissions M. Jia et al.
- 42 Years of straw incorporation drive macroaggregation, enhancing macropores and POM in a Vertisol: Insights from X-ray μCT Z. Guo et al.
- Soil pore network effects on the fate of nitrous oxide as influenced by soil compaction, depth and water potential M. Pulido-Moncada et al.
- A direct method to determine gross N<sub>2</sub>O reduction potential: Downscaling soil mass to constrain the reduction hotspots R. Shingubara et al.
Saved (final revised paper)
Latest update: 30 Apr 2026
Short summary
Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for different combinations of soils and water contents. Prediction accuracy of (N2O + N2) fluxes was highest with combined proxies for oxygen demand (CO2 flux) and oxygen supply (anaerobic soil volume fraction). Knowledge of denitrification completeness (product ratio) improved N2O predictions. Substitutions with cheaper proxies (soil organic matter, empirical diffusivity) reduced prediction accuracy.
Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for...
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