Articles | Volume 18, issue 6
Biogeosciences, 18, 2047–2061, 2021
Biogeosciences, 18, 2047–2061, 2021

Research article 22 Mar 2021

Research article | 22 Mar 2021

Methane dynamics in three different Siberian water bodies under winter and summer conditions

Methane dynamics in three different Siberian water bodies under winter and summer conditions
Ingeborg Bussmann1, Irina Fedorova2, Bennet Juhls3, Pier Paul Overduin4, and Matthias Winkel5,a Ingeborg Bussmann et al.
  • 1Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Helgoland, Germany
  • 2Institute of Earth Sciences, St. Petersburg University, St. Petersburg, Russia
  • 3Institute for Space Sciences, Department of Earth Sciences, Freie Universität Berlin, Berlin, Germany
  • 4Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam, Germany
  • 5German Research Centre for Geoscience, 3.7 Geomicrobiology Group, Potsdam, Germany
  • acurrent address: German Research Centre for Geosciences, 3.5 Interface Geochemistry Group, Potsdam, Germany

Correspondence: Ingeborg Bussmann (


Arctic regions and their water bodies are affected by a rapidly warming climate. Arctic lakes and small ponds are known to act as an important source of atmospheric methane.

However, not much is known about other types of water bodies in permafrost regions, which include major rivers and coastal bays as a transition type between freshwater and marine environments. We monitored dissolved methane concentrations in three different water bodies (Lena River, Tiksi Bay, and Lake Golzovoye, Siberia, Russia) over a period of 2 years. Sampling was carried out under ice cover (April) and in open water (July–August). The methane oxidation (MOX) rate and the fractional turnover rate (k) in water and melted ice samples from the late winter of 2017 was determined with the radiotracer method.

In the Lena River winter methane concentrations were a quarter of the summer concentrations (8 nmol L−1 vs. 31 nmol L−1), and mean winter MOX rate was low (0.023 nmol L−1 d−1). In contrast, Tiksi Bay winter methane concentrations were 10 times higher than in summer (103 nmol L−1 vs. 13 nmol L−1). Winter MOX rates showed a median of 0.305 nmol L−1 d−1. In Lake Golzovoye, median methane concentrations in winter were 40 times higher than in summer (1957 nmol L−1 vs. 49 nmol L−1). However, MOX was much higher in the lake (2.95 nmol L−1 d−1) than in either the river or bay. The temperature had a strong influence on the MOX (Q10=2.72±0.69). In summer water temperatures ranged from 7–14 C and in winter from −0.7 to 1.3 C. In the ice cores a median methane concentration of 9 nM was observed, with no gradient between the ice surface and the bottom layer at the ice–water interface. MOX in the (melted) ice cores was mostly below the detection limit. Comparing methane concentrations in the ice with the underlaying water column revealed methane concentration in the water column 100–1000 times higher.

The winter situation seemed to favor a methane accumulation under ice, especially in the lake with a stagnant water body. While on the other hand, in the Lena River with its flowing water, no methane accumulation under ice was observed. In a changing, warming Arctic, a shorter ice cover period is predicted. With respect to our study this would imply a shortened time for methane to accumulate below the ice and a shorter time for the less efficient winter MOX. Especially for lakes, an extended time of ice-free conditions could reduce the methane flux from the Arctic water bodies.

1 Introduction

Worldwide, the mixing ratio of methane has been increasing rapidly since 2000, from 2.1 ppb yr−1 for the time span 2000–2009 to 6.6 ppb yr−1 for the time span 2008–2017 and to 6.1 ppb yr−1 in 2017 (Saunois et al., 2020). Understanding and quantifying the global methane budget is important for assessing realistic pathways to mitigate climate change. For the 2008–2017 decade, global methane emissions are estimated by a top-down approach to be 576 Tg CH4 yr−1 (range 550–594, corresponding to the minimum and maximum estimates of the model ensemble) (Saunois et al., 2020). The reasons for the observed increases in atmospheric methane are unclear. A probable explanation is increased methane emissions from wetlands, both in the tropics (Nisbet et al., 2016) and in the Arctic (Fisher et al., 2011), and from other Arctic water bodies (Walter Anthony et al., 2016; Kohnert et al., 2018) or geological methane emissions (Kohnert et al., 2017). Especially in northern latitudes, natural wetlands contribute 59 % to the northern methane emissions (Saunois et al., 2020). In the Arctic, the mean atmospheric methane mixing ratio increased by 6 ppb yr−1 from 2001 to 2017, resulting in an atmospheric mole fraction of 1939 ppb in 2017 at Svalbard (Platt et al., 2018) and with a median of 1932 ppb in 2017 for Tiksi (Hydrometeorological Observatory of Tiksi, Russia). In particular the Laptev Sea, in eastern Siberia, is generally a source of methane to the atmosphere, and the sea–air flux of methane is mainly affected by increasing water temperatures (Wåhlström et al., 2016). Also, Saunois and co-authors estimated increased methane emission for freshwater systems and wetlands, but a better quantification of the emissions of different contributors (streams, rivers, lakes, and ponds) is needed (Saunois et al., 2016).

Lakes are important sources of atmospheric methane on a regional to global scale (Bastviken et al., 2004; Cole et al., 2007), and their contribution is predicted to increase in response to climate change and rapidly warming waters (O'Reilly et al., 2015; Tan and Zhuang, 2015; Wik et al., 2018). Most of the methane produced in lake sediments enters the atmosphere via ebullition (Bastviken et al., 2004; Walter et al., 2007), a temperature-sensitive transport mode with high spatial and temporal heterogeneity (DelSontro et al., 2015). The role of Arctic rivers as a methane source to the shelf seas is poorly described. Some studies present rivers as strong methane sources (Morozumi et al., 2019), while other studies revealed a complex pattern of riverine methane input (Bussmann et al., 2017).

One major drawback from most of these studies is that sampling was conducted in the ice-free season, although most of the year Arctic water bodies are ice covered. Thus, the seasonal variation could not be captured within those studies. The ice cover on lakes decouples the water body from the atmosphere and the circulation changes from wind-driven to thermohaline. After ice formation a stable winter stratification is set up. As there is no more external oxygen supply, enhanced anaerobic degradation leads to accumulation of methane, H2S and NH3 (Leppäranta, 2015). In several lakes in Alaska and Canada, dissolved methane was highest under the ice cover, indicating that the spring ice-off period is a large source of atmospheric methane (Townsend-Small et al., 2017; Cunada et al., 2018; Serikova et al., 2019). In lakes at >65 N the ice duration is 9 months, typically from around mid-September to mid-June (Cortés and MacIntyre, 2020). However, the hydrography of a lake is also an important factor to consider since stratification of the water column counteracts an intense gas exchange. Thus, examples are known for lakes with incomplete spring mixing and consequently a maximum gas exchange in autumn during complete mixing (Deshpande et al., 2015).

Rivers of permafrost regions are characterized by an ice season of >100 d duration between autumn freeze-up, and spring ice-off; for the Lena River it is >160 d (Shiklomanov and Lammers, 2014). Ice effects and the demobilization of liquid water result in very low discharge during winter freeze-up and runoff is lowest during late winter (Lininger and Wohl, 2019). A decrease in ice thickness of the largest Siberian rivers during the last 10 to 15 years (Shiklomanov and Lammers, 2014) could enhance the channel connectivity to subchannel and groundwater flow, causing an increase in winter base flow, as suggested by Gurevich (2009). An increased winter flow and increasing temperatures in the Lena River are also supported by Tananaev et al. (2016), Yang et al. (2002), and Peterson et al. (2002).

An important filter, counteracting the methane flux into the atmosphere, is microbial methane oxidation. Methane can be oxidized under anoxic conditions close to sediment horizons where it is produced (Martinez-Cruz et al., 2017; Winkel et al., 2018) or during migration through the oxic water column to the atmosphere (Mau et al., 2017a; Bussmann et al., 2017). Under ice cover, it is important to consider methane oxidation below ice as it may reduce the total amount of methane emitted to the atmosphere during ice-off. Active methane oxidation and a methanotrophic community have been shown for permafrost thaw ponds and lakes (Kallistova et al., 2019). Yet, the methane oxidation capacity in such lakes during ice cover with low temperatures and low oxygen concentrations is unknown. In a study covering several boreal lakes, methane oxidation was restricted to three lakes, where the phosphate concentrations were highest (Denfeld et al., 2016). Rates of methane oxidation during the winter have been found to be much lower than summer rates, yet there is no clear consensus on the factors limiting methane oxidation in winter (Ricão Canelhas et al., 2016). In addition to oxygen concentration, the geological background (i.e., yedoma-type permafrost lakes versus non-yedoma-type lakes) also had a significant impact on the methane oxidation rate (Martinez-Cruz et al., 2015).

Our study tests the hypothesis that winter ice blocks methane emissions, leading to the accumulation of methane in the underlying water bodies. By studying hydrographically different water bodies (lake, river, and sea), we expect insights into the influence of water column dynamics on methane accumulation to result. In addition, we measure methane oxidation rates in the water column and in melted ice to assess oxidation as a potential sink.

Figure 1Map of the study area in the Lena River and Buor-Khaya Bay (Siberia, Russia). The inset shows details of the sampling at Lake Golzovoye. Sampling locations in winter are shown in red and summer sampling locations in green. Created by Bennet Juhls.

2 Study area

This study was conducted on the southern coast of Bykovsky Peninsula in northeast Siberia, Russia (Fig. 1). Thermokarst lakes in that area commonly originated in the early Holocene when surficial permafrost started to thaw, leading to accumulation of lake sediments with organic contents of about 5 %–30 % (Biskaborn et al., 2016; Schleusner et al., 2015). Thermokarst lakes in the Lena River delta seem to be ice free a little later after the coastal ice breakup, depending strongly on the air temperature in the individual year (Bennet Juhls, unpublished data).

Offshore of the Bykovsky Peninsula, part of the Yedoma Ice Complex is submerged, and subsea permafrost is currently degrading. The coastline erodes at mean rates of between 0.5 and 2 m yr−1 and can intersect inland water bodies, draining them or leading to the formation of thermokarst lagoons (Lantuit et al., 2011). The sea ice season in Tiksi Bay and the Buor-Khaya Bay typically starts in late September–early October and ends in beginning–mid-July (Angelopoulos et al., 2019; Janout et al., 2020). Due to its isolation behind Muostakh Island and Cape Muostakh, sea ice tends to be preserved longer than in the central Laptev Sea, resulting in approx. 96 d of open water (Günther et al., 2015).

The Lena River has a mean annual discharge of 581 km3 yr−1. It is the second largest Arctic river by annual discharge and the sixth largest globally. There are no dams on the mainstem of the Lena, but there is a dam on the Vilyuy River, one of the Lena's main tributaries (Holmes et al., 2013). The Lena's watershed is 2.6 million square kilometers, of which 70.5 % is underlain by continuous permafrost (Juhls et al., 2020). Most of the water is discharged at the end of May and beginning of June when the ice in the rivers breaks up, but the Laptev Sea is still covered by sea ice (Holmes et al., 2012). The main Lena River branches enter the Buor-Khaya Bay through the northern and eastern part of the delta and through the Bykovskaya Channel with 20 %–25 % of the Lena River water discharge (Charkin et al., 2011). The further distribution of the river water in Buor-Khaya Bay is mainly driven by the atmospheric systems of the cyclonic or anticyclonic Arctic circulation (Thibodeau et al., 2014; Wegner et al., 2013).

3 Material and methods

3.1 Study sites

In the course of several expeditions to the Lena Delta (Siberia, Russia), we were able to repeatedly sample the same locations in winter and summer over the years (Table 1).

Table 1Locations and sampling dates of water samples and ice cores for dissolved methane (M-conc) and methane oxidation rates (MOX).

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In September 2016, water samples were taken in the Bykovskaya Channel and mouth of the Lena River (Overduin et al., 2017). In April 2017 with ice cover on the water bodies, ice cores were taken at Lake Golzovoye, the Lena River, and Tiksi Bay, and the water below the ice was also sampled. Lake Golzovoye is an oval-shaped thermokarst lake about 0.5 km in diameter with a maximal depth of 10 m, surrounded by yedoma uplands at various stages of degradation and with no ice grounding in its center (Spangenberg, 2018; Strauss et al., 2018). Tiksi Bay is a shallow brackish bay at the southern end of Buor-Khaya Bay but still strongly influenced by the Lena River outflow. The water column is usually stratified, with a colder, more saline water underlying the brackish surface layer (Overduin et al., 2016). The water of the Lena River was sampled near Samoylov island (main channel). In July and August 2017, we sampled the same locations (Lena River near Samoylov, Tiksi Bay, and Lake Golzovoye) with open water (Strauss et al., 2018). The transect to the “outer” Tiksi Bay has been investigated repeatedly over the previous years (Bussmann, 2013; Bussmann et al., 2017). In April 2018, again under-ice samples were taken from the Lena River (Kruse et al., 2019).

3.2 Water sampling for methane analysis

In winter, water samples at the ice–water interface were taken with a 1 L water sampler (Uwitec Austria) and transferred to 0.5 L Nalgene bottles. In the field camp, the water was transferred with a 60 mL syringe into glass bottles, closed with butyl stoppers and crimps, poisoned with 0.2 mL 25 % H2SO4, and stored upside down at 4 C. In summer the water samples were directly transferred from the water sampler into the glass bottles and further processed as described above.

In winter 2017, due to problems of freezing, 40 mL of sample water was shaken for 2 min with 20 mL nitrogen in a 60 mL syringe. This headspace was then transferred into glass bottles filled with a saturated NaCl solution. Comparative measurements showed no significant difference between these two sampling strategies (Triputra, 2018). This data set has been published already: .

3.3 Ice cores

In winter 2017, in addition to water sampling, we also investigated ice cores for their methane content and methane oxidation rates. For each station three ice cores were drilled with a Kovacs Mark II ice coring system (9 cm diameter). One core was used to measure the in situ temperature and back-up, one core was used for methane analysis, and the third core was drilled for later molecular analyses. For determining the methane oxidation rates and later methane concentrations, the ice cores were processed at the Research Station Samoylov Island. The top 10 cm, a 10 cm mid-section, and three 10 cm sections at the bottom of the core were cut off and transferred to special PVDF gas sampling bags (Keika Ventures). The remaining parts of the cores were kept frozen. The bags were evacuated and the cores melted within approx. 5 h in a water bath at 8 C. The sample was distributed with a 60 mL syringe to three glass bottles for determination of MOX and one bottle (which was poisoned immediately with H2SO4) for analysis of methane concentration (Strauss et al., 2018).

3.4 Methane analysis

Methane concentrations were determined via the headspace method by adding 20 mL of N2 as headspace and vigorous shaking for 2 min. Headspace methane concentrations were analyzed in the home laboratory with a gas chromatograph (GC 2014, Shimadzu) equipped with a flame ionization detector and a ShinCarbon column (Restek, USA). The temperatures of the oven, the injector, and detector were 100, 120, and 160 C, respectively. The carrier gas (N2) flow was 20 mL min−1, with 40 and 400 mL min−1 synthetic air. Gas standards (Air Liquide) with methane concentrations of 10 and 100 ppm were used for calibration. The calculation of the methane concentration was performed according to Magen et al. (2014). The precision of the calibration line was r2=0.99 and the reproducibility of the samples was <5 %.

3.5 Methane oxidation rate (MOX)

The MOX rate was determined by adding radioactive tritiated methane to triplicate samples (Bussmann et al., 2015). The principle of the MOX rate determination is based on the ratio of produced tritiated hydrogen from the added tritiated methane. This ratio corrected for the incubation time gives the fractional turnover rate (k, d−1). To obtain the MOX rate, k is multiplied with the in situ methane concentration. Radioactive tritiated methane (0.1 mL of 3H-methane, 2 kBq mL−1, American Radiolabeled Chemicals) was added to triplicate samples. Samples were incubated for 60 h at 1 C, in the dark. Incubation was stopped by adding 0.2 mL of 25 % H2SO4. Abiotic controls were poisoned before adding the tracer. Radioactivity was determined with a liquid scintillation counter (Triathler, Finland) and Ultima Gold (PerkinElmer) as a scintillation cocktail. For MOX, the limit of detection was calculated as described in Bussmann et al. (2015) and was determined to be 0.009 nmol L−1 d−1 for this data set.

In a set of experiments, we also assessed the influence of temperature on the MOX rate. Water samples (main channel, April 2017) that were incubated at temperatures from 1, 4, 7, and 10 C show the temperature curve of the MOX reaction. At a previous cruise off Svalbard, identical experiments were performed (Mau et al., 2017a) with water from stations HE449-CTD-2, 10, 33, and 37 incubated at temperatures from 0, 4, 8, 13, and 20 C. We determined the Q10 factor, which indicates the temperature dependence of a biological process according to (Raven and Geider, 1988)

(1) Q 10 = exp - 10 m T is 2 ,

where Tis is the in situ temperature and “m” the slope of the regression line of the Arrhenius plot (the inverse of the absolute temperature vs. the natural logarithm of the MOX rate).

3.6 Hydrochemistry and hydrology

Profiles of water temperature and conductivity were measured with a CastAway CTD (SonTek) in summer 2016 and in winter and summer 2017. Water depth measurements were made with an echo-sounding device (Garmin), every 10 m along the profile. Water velocity was measured in three horizons at each vertical profile: 0.2, 0.6, and 0.8 H (with H being total water depth) using a hydrological speed recorder (GR-21). Water discharges were calculated according to the recommendations for Russian hydrometeorological stations (Fedorova et al., 2015).

4 Results

4.1 Methane concentrations and hydrochemistry

In the Lena River in summer 2016, median methane concentrations were 37 nM (n=21) in surface water and significantly higher than the winter concentrations of 2017 (8 nM, Wilcoxon test, p=0.0004, Fig. 2). Comparing the summer and winter concentrations for 2017/18 also showed significantly higher values in summer, with a median of 25 nM vs. 10 nM in winter (Wilcoxon test, p=0.0009, Fig. 2). Pooling the complete data set into winter and summer data for the Lena River showed that summer concentrations were significantly higher than winter concentrations (median of 31 nM vs. 8 nM, p<0.001). In summer 2016, water temperature ranged from 8.5–10.3 C and electric conductivity from 135–185 µS cm−1 with a pH value around 6 that showed almost no variation in the water columns of 8.3 to 10 m (Matthias Winkel, unpublished data).

Figure 2Median summer and winter methane concentrations at the Lena River, Lake Golzovoye, and Tiksi Bay in the years 2016–2018. Bright columns indicate summer values, and dark columns indicate winter values. The asterisks indicate significant differences between summer and winter data.


In winter 2017, the water column under the ice of the Lena River was about 1.3 C with a conductivity of 275 µS cm−1; no stratification was evident. The water was flowing at a speed of 0.043 m s−1 under the ice and with 0.1 m s−1 above the bottom (0.85 H) (Strauss et al., 2018) (Sect. 2.5). In the main channel of the Lena River the maximal water depth in winter 2017 was 25.3 m vs. 28 m in summer at the same point. In winter the water velocity in the channels is much lower than in summer: in April 2017 it was 0.18 m s−1 in the Bykovskaya Channel but reached 1.53 m s−1 in summer 2016.

In summer 2017, the water discharge in Bykovskaya Channel was 5313.4 m3 s−1. Water temperature ranged from 13–14 C with no changes with water depth, indicating a full mixing (Strauss et al., 2018). In winter 2018, the water column under the ice of the Lena River was about −0.7C with a median conductivity of 465 µS cm−1 and a median pH of 7.3. In Bykovskaya Channel oxygen saturation had a median value of 51 %. No stratification of the water column was evident, based on water temperature and conductivity (Kruse et al., 2019). These findings agree to the Lena River monitoring observations by Juhls et al. (2020).

In Lake Golzovoye, in summer 2017, the median methane concentration was 49 nM (n=5), while in winter concentrations were about 40 times higher with a median of 1957 nM (n=8, Wilcoxon test, p=0.002, Fig. 2). In winter, the water temperature of the lake was cold at the surface (median 0.3 C in the top 1 m) and warmer (2 C) at the bottom with a thermocline at 2 m. In summer, the surface water was heated to 7–10 C, while the bottom water only warmed to 4–5 C.

In Tiksi Bay and in summer 2017, the median methane concentration was 14 nM (n=6). In contrast, in winter concentrations were about 7 times higher with a median of 103 nM (n=2). Due to low sample numbers, no statistical test was possible. In summer 2017, water temperature ranged from 4.3–10.9 C and electric conductivity from 20–6200 µS cm−1. In winter, bottom water had a temperature of 3.3 and 0.3 C at the top 1 m, with a thermocline at 1–2 m.

4.2 Ice cores

Ice cores were taken at Lake Golzovoye and in Tiksi Bay, whereas no ice core data are available for the Lena River itself (Strauss et al., 2018). Methane concentrations in the ice cores of Lake Golzovoye and Tiksi Bay were rather low (both with a median of 9 nM). No depth gradients from the ice surface, middle section, and the three lowermost sections were evident. In a closeup for the bottom layers, there was a slight increase in methane towards the ice–water interface for the ice cores from Lake Golzovoye, but not from Tiksi Bay.

Figure 3 shows the median methane concentrations in the ice cores and in the water from the ice–water interface. Water column concentrations were 11 times and 109 times higher than in the ice cores, for Tiksi Bay and Lake Golzovoye, respectively, with a median of 102 and 985 nM (Bussmann and Fedorova, 2019). However, in one core of Lake Golzovoye (core no. 24), concentrations were orders of magnitude higher throughout the core (854–11091 nM) and 6954 nM in the water below Fig. 2 (Fig. 3).

Figure 3Median methane concentrations in the ice cores and in the water below the ice. Data from Tiksi Bay are shown in light grey and data for Lake Golzovoye in dark grey, with core no. 24 shown separately in white. Note the logarithmic scale.


4.3 Methane oxidation rates (MOX)

Methane oxidation rates were determined in the melted water from the ice cores from the different locations and in water from the Lena River. Due to logistic restraints at the field sites, no direct measurements of MOX in the waters of Lake Golzovoye and Tiksi Bay were possible. In the first step we determined the fractional turnover rate k. In the ice cores, k was very patchily distributed, and 73 % of all samples were below the detection limit. In all positive samples, the value for k was rather stable with a median of 0.003 per day (n=31). In the water samples below the ice, the fractional turnover rate k was never below the detection limit. The median k determined for all water samples (Lena River) was also 0.003 (n=14). To calculate the MOX for all water samples, we multiplied the median k of 0.003 obtained from Lena River and ice cores with the respective in situ methane concentration of the water columns of Lake Golzovoye, Tiksi Bay, and Lena River.

The highest MOX rates were found in the water below station 24 in Lake Golzovoye (20.36 nmol L−1 d−1), where very high methane concentrations were also observed (Fig. 4). The median MOX in the other water samples of Lake Golzovoye was about 1 order of magnitude lower (2.95 nmol L−1 d−1). In Tiksi Bay and in the Lena River MOX rates decreased by further orders of magnitude (median of 0.305 and 0.023 nmol L−1 d−1, Fig. 4).

Figure 4Box plot of the calculated methane oxidation rates (MOX) in water under ice cover at Lake Golzovoye, at the location of ice core no. 24, Tiksi Bay, and the Lena River. Note the logarithmic scale.


4.4 Temperature influence on MOX

To assess the influence of temperature on the MOX, we incubated water samples at different temperatures and determined their MOX rate. As expected, with increasing temperature the MOX rate also increased (Fig. 5). The Q10 calculated for these water samples from the Lena River was 2.72±0.69. For polar and marine waters off Svalbard a Q10 of 2.99±0.86 was calculated.

Figure 5Influence of incubation temperature on methane oxidation rate for Lena River water, winter 2017.


5 Discussion

5.1 Methane concentrations and hydrochemistry

In this study we compared the methane concentration under ice cover (winter) with open-water situations (summer) in three different water bodies.

In winter the methane concentrations in the Lena River were 4 times lower than in summer (Table 2). The Lena River displays a reduced but still substantial water flow/discharge under ice cover. In 2017, the discharge in winter (March and April with 2830 and 2185 m3 s−1) was about 10 times lower than in summer (July and August with 29 800 and 26 000 m3 s−1 (Shiklomanov et al., 2018).

Table 2Comparison of methane concentration in water and ice as well as methane oxidation rates (MOX) at different sites and in different seasons.

a Comparing dissolved methane concentrations in water in winter and summer. b Comparing methane concentration in the lowest ice core layer with underlying water. c MOX winter data from this study and summer data from Osudar et al. (2016) and Bussmann et al. (2017), d assuming 270 d of ice coverage for Lake Golzovoye and Tiksi Bay and 160 d of ice coverage for Lena River. e NA: not available.

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In winter there are only a few possible sources of methane left. The surrounding soils of the drainage basins are all frozen. The ground below the main channels of the Lena is still unfrozen (Fedorova et al., 2019); however the sediment consists of coarse grain sizes and is poor in organic material (Rivera et al., 2006), and we do not expect any in situ methane production. Especially in the Lena River, a substantial amount of particulate organic carbon (POC) originates from thermokarst-induced, abrupt collapse of Pleistocene Ice Complex deposits. These events mainly occur in late summer. The signal however is still visible in winter (Wild et al., 2019). With these collapses methane could also be imported to the river. So, we could only detect low methane concentrations in winter. In contrast, in summer, the active-layer soils from the drainage basin allow for several sources of methane and thus increased methane concentrations in summer. Also, methane could be transported from the southern Lena catchment towards our study area, as is suggested for particulate organic matter (Winterfeld et al., 2015). At least during the warm season, methane production from (temperate) river sediments is possible (Bednařík et al., 2019).

In Tiksi Bay, we observed an increase of a factor of 7 in dissolved methane under ice cover, compared to open-water conditions (Table 2). Tiksi Bay is part of Buor-Khaya Bay and via the central Laptev Sea perennially connected to the Arctic Ocean. Not much is known about tidal surge or water movement in Tiksi Bay under ice cover. It is anticipated that the ice cover on Tiksi Bay will lead to a decrease in tidal amplitudes and velocities (Fofonova et al., 2014). The structure of ice formation in Tiksi Bay also suggests that even in winter it is still an open system connected to the outer bay (Spangenberg et al., 2020). Sources of methane could be through diffusion of methane from the underlying sediment (Bussmann et al., 2017), where methane is produced by the degradation of organic material. However, as aerobic methane oxidation in the water column is impaired by low temperatures, methane concentrations in water increase.

In Lake Golzovoye, dissolved methane concentrations increased by a factor of 40 from summer to winter (Table 2). Lake Golzovoye is an isolated freshwater lake with presumably only a weak thermohaline circulation (Leppäranta, 2015; Spangenberg et al., 2020). A similar seasonal pattern of methane among lake waters of the Mackenzie Delta has been observed, ranging from very high concentrations at the end of winter beneath lake ice (>2 000 000 nM) to considerably lower concentrations during open water, particularly by late summer (approx. 10 000 nM) (Cunada et al., 2018). For yedoma lakes in Alaska, the same pattern was observed with high methane concentrations in winter and a decrease of more than 1 order of magnitude in summer (even though the actual concentrations > 7.53 mg L−1 or 120 mM were much higher than in this study) (Martinez-Cruz et al., 2015; Sepulveda-Jauregui et al., 2015). The same pattern is reported for boreal Swedish lakes (Denfeld et al., 2018). The source of methane in the water column of Lake Golzovoye is presumably the sediment, where high concentrations and active methane production, sulfate reduction, and anaerobic methane oxidation have been observed in winter 2017 (Liebner et al., 2021).

The role of water velocity and water column mixing is not clear, but our data suggest more methane accumulates under ice in a stagnant water body such as a lake than in a water body with running water such as a river. Water column turbulent diffusivity has a major influence on the methane cycle, where higher turbulence potentially leads to a greater proportion of methane being oxidized, and lower turbulence leads to a greater proportion being stored (Vachon et al., 2019).

5.2 Ice cores

The median methane concentration of all ice cores for Lake Golzovoye and Tiksi Bay was 9 nM, which was supersaturated compared to atmospheric concentrations, for which the equilibrium concentration would be 5 nM. More details on the ice formation in the different water bodies are given in Spangenberg et al. (2020). Compared to the methane concentrations in the water, the concentrations in the ice were 1–2 orders of magnitude lower (Table 2). This means that, in terms of methane, a complete separation of the water body from the atmosphere can be assumed. As mentioned earlier in this study and in Spangenberg et al. (2020), core no. 24 (LK-3) in Lake Golzovoye had much higher methane concentrations throughout the core and visible inclusions of (methane) bubbles. We assume that core no. 24 was located above an active ebullition site, which might have slowed ice formation and prolonged direct methane release to the atmosphere.

In the ice itself, 28 % of the samples showed methane oxidation capability. During ice formation most free-living bacteria are lost from the liquid phase through incorporation into the ice, while bacterial aggregates remain in the water (Santibáñez et al., 2019). In an experimental setup, Wilson et al. (2012) show that multiple freeze–thaw cycles in water from freshwater lakes reduce the total bacterial cell number at least 100 000-fold. In addition, methanotrophic bacteria are particular sensitive to freezing and thawing (Green and Woodford, 1992; Hoefman et al., 2012). These findings could explain the reduced activity of methanotrophic bacteria within the ice cores.

Also, we did not detect any discoloration or other indications of photosynthesis or other biological processes in the bottom layer of the ice cores. Thus, we conclude that the ecosystem of freshwater ice and its lower margin does not reach the richness observed in polar sea ice (Leppäranta, 2015).

5.3 Methane oxidation rates (MOX)

In this study we determined the methane oxidation rate with tritiated methane as a tracer. The advantage of the tracer injection method is that natural low concentrations are hardly altered, and thus we assume that our values are close to the actual rates. The fractional turnover rate k was determined in ice cores from the lake and Tiksi Bay and in river water, but not for water samples from the lake and Tiksi Bay. Within these locations k was evenly distributed. However, k may vary between different environments (river, lake, and brackish water) as well as between ice cores and underlying water. The fractional turnover rate is influenced by temperature, methane, and oxygen concentrations (Steinle et al., 2017). Temperature was low at all locations and should not have a big impact on k. For methane concentrations ranging from 6–800 nM, k was independent from the methane concentration. Studies from Mau et al. (2017b) and Steinle et al. (2017) support the fact that the k-to-methane relation does not necessarily apply. However, it cannot be excluded that at the very high methane concentration in Lake Golzovoye the real k may have been larger. Thus, at very high methane concentrations, our estimations of MOX would be an underestimation of the real rates and real k. For all other samples, we suppose that the application of one k to all samples is the best possible assumption.

Our data span 3 orders of magnitude, ranging from 0.02 nmol L−1 d−1 in the Lena River to 0.31 in Tiksi Bay and 2.95 nmol L−1 d−1 in Lake Golzovoye. Another polar study finds a MOX of 0.004–1.09 mg C m−3 d−1 (=0.33–91 nmol L−1 d−1) at the water–ice interface of a Swedish lake (Ricão Canelhas et al., 2016). Also, Bastviken et al. (2002) report a MOX of similar range (0.001–39 mg C m−3 d-1=0.08–3250 nmol L−1 d−1). However, the methods of determining MOX were quite different and more of a potential rate. Another study in yedoma lakes in Alaska also reports higher MOX (0.03–0.28 mg methane L−1 d-1=1875–17 500 nmol L−1 d−1) with a kinetic approach to determine MOX (Martinez-Cruz et al., 2015). In marine polar waters off Svalbard MOX was determined with the same tracer method and ranged from 1.6–2.2 nmol L−1 d−1 in summer (Mau et al., 2017a). Thus, our data are within the very low range of reported MOX rates in polar regions, probably due to methodological differences.

In previous years we determined MOX in the study area during summer, applying the same method as in this study. Therefore, we can approach a seasonal comparison (winter vs. summer), assuming interannual variability is negligible and neglecting spring and autumn mixing. To estimate the importance of ice cover on the overall MOX, we assume an ice coverage of 270 d for Lake Golzovoye and Tiksi Bay (Cortés and MacIntyre, 2020) and 160 d for the Lena River (Shiklomanov and Lammers, 2014). By multiplying the respective winter and summer MOX with the days of ice cover and days of open water, we can calculate the amount of methane oxidized during ice cover versus ice-off time.

For the Lena River and permafrost lakes, we compare our winter data with summer data obtained in July 2012 (Osudar et al., 2016). For the Lena River, with a median MOX of 22.8 nmol L−1 d−1 (n=8), the summer MOX was about 3 orders of magnitude higher than in winter (0.023 nmol L−1 d−1). The amount of methane oxidized during ice-off (4674 nmol L−1) was about 1270 times more than the amount oxidized during ice cover (4 nmol L−1).

For MOX in lakes, summer rates from small lakes near Research Station Samoylov Island were 36 times higher (median 107 nmol L−1 d−1, n=6) than winter rates (2.95 nmol L−1 d−1). Also, for yedoma lakes in Alaska, summer values of MOX were about 10 times higher than winter values (Martinez-Cruz et al., 2015). The amount of methane oxidized during open water (10 165 nmol L−1) was about 13 times more than the amount oxidized during ice cover (797 nmol L−1).

For Tiksi Bay there are also summer values of MOX available (Bussmann et al., 2017). However, with a median summer rate of 0.419 nmol L−1 d−1 for surface riverine water, there is little difference when compared to our winter data (0.31 nmol L−1 d−1, Table 2). The amount of methane oxidized during open water (40 nmol L−1) was about 2 times less than the amount oxidized during ice cover (84 nmol L−1).

There still seems to be no clear consensus on the factors limiting MOX in winter. In several boreal lakes MOX was restricted to lakes where the phosphate concentrations were highest (Denfeld et al., 2016). Another study reports that in winter MOX is mainly controlled by the dissolved oxygen concentration, while in the summer it was controlled primarily by the methane concentration (Martinez-Cruz et al., 2015). The stratification of lakes determines the availability of methane and oxygen for the methanotrophic bacteria and thus strongly influences MOX (Kankaala et al., 2006, 2007).

Temperature is also an important factor affecting winter MOX. MOX is observed at temperatures of 2 C, mostly by Methylococcaceae (Ricão Canelhas et al., 2016). A recent study with in situ concentrations in a northern temperate lake observes a Q10 of 2.4±1.4 (Thottathil et al., 2019), which is a bit lower than the Q10 of this study with 2.7 and 2.9 for polar, fresh, and marine water, respectively. In addition, there are co-correlations between temperature and methane concentration. At substrate (methane) saturation, temperature has a strong influence, while under substrate-limiting conditions, temperature has a minor influence (Lofton et al., 2014; King and Adamsen, 1992). In contrast, Thottathil et al. (2019) observed a strong temperature response for MOX across the entire range of ambient methane concentrations. Measuring MOX with tritiated methane and thus at concentrations close to in situ, we can compare the Q10 from this study with data from temperate environments. The Q10 for polar environments was higher than Q10 values obtained from temperate waters (the Elbe, Germany, and North Sea; Bussmann et al., 2015) with 1.52 and 1.75, respectively (Fig. 6). Although the substrate concentration in the temperate waters was higher, MOX from polar regions seems to react more sensitively to a temperature increase. One explanation could be that the temperature optimum of psychrotolerant methanotrophs is below 20 C (Bale et al., 2019). Thus, the polar methanotrophs are further away from their optimum temperature and react with increased activity to temperature increases while methanotrophic bacteria from temperate waters are nearer to their optimum temperature and do not react as sensitively.

Figure 6Temperature dependence (Q10) of the methane oxidation rate at different locations; shown are the mean and standard deviation. Data for the Elbe and North Sea are from Bussmann et al. (2015), and data for the temperate lake are from Thottathil et al. (2019).


Environmental conditions between winter and summer conditions certainly differ and may also affect the population structure of methanotrophs. Some psychrophilic strains adapt to colder temperatures (20 C vs. 4 C) by modifying their fatty acid composition (Bale et al., 2019), while others may have only limited abilities, resulting in different population structures. This is supported by a recent study revealing that wintertime Arctic bacterial communities' and food webs' structure change based on carbon availability (Kellogg et al., 2019).

In this study we compared the methane inventory (concentrations) and the biological sink (methane oxidation) of three polar aquatic environments under summer and winter conditions. For a complete budget, the methane sources should be known, as there is methane input from the sediment, by either diffusion or ebullition and lateral input by groundwater, river flow, or water circulation in the bay. Additional sinks for the systems are methane flux from the water into the atmosphere and lateral output by water circulation. In the following we apply our results on the methane cycle of the three different environments.

In the river we find higher methane concentrations and higher MOX in summer. The low concentrations in winter are probably due to low methane input from the frozen borders and a reduced but still effective dilution of methane by the water flow (Fedorova et al., 2019). MOX is low and thus will not contribute to the removal of methane from the river. The ice-off on the river will probably not increase methane emissions, as only minor amounts are accumulated under the ice.

In the lake, we observed a strong accumulation of methane in winter under ice cover. Thus, either the methane sources are strengthened and/or the sinks have weakened. In winter there is an active cycle of methanogenesis and (anaerobic) methane oxidation in the sediment (Liebner et al., 2021). However, we assume that this activity is the same or less than in summer. Ebullition does occur in winter (as shown for ice core no. 24) and thus will lead to locally increased methane concentrations. The methane sink and flux from the water into the atmosphere is cut off by the ice cover; thus the only remaining sink is MOX, which is reduced by low temperature and other environmental factors as discussed above. During and after ice-off, altered or weakened water column stratification will allow a mixing of the water column. This results in increased methane emission but also enhanced MOX as more oxygen and nutrients will become available (Utsumi et al., 1998). In summer increased MOX and methane flux from the water lead to reduced methane concentrations in the water.

In the bay, we observed an accumulation of methane under ice and higher concentrations in winter. Thus, we assume that the sinks have weakened, with a stable or reduced methane input. Our comparison shows that MOX does not change significantly between the seasons; thus the other main sink, transport via water exchange of the bay with the shelf water, is reduced during winter because of the ice cover (Fofonova et al., 2014), and direct flux from open water is reduced by the ice cover. There is probably still an input of methane from the sediments, which results in a slight accumulation of methane. The ice-off in the bay will result in increased methane emissions and also reduced methane concentrations when water circulation in the bay restarts.

In a changing, warming Arctic, a shortened time of ice coverage on lakes and rivers is predicted (Prowse et al., 2011; Newton and Mullan, 2020; Benson et al., 2012). This could be −6 d per 1 of temperature increase (Newton and Mullan, 2020). Another scenario is given by Benson et al. (2012) with −17 d every 100 years. For the lake we observed the greatest difference between the ice-covered winter situation and open water. Especially in the lake, the duration of ice cover is important and we assume that a shorter ice cover results in less high methane concentrations under ice and subsequently in a reduced pulse of methane emissions at ice-off. With respect to our study, this would imply a shortened time for methane accumulation under ice and a shortened time for the less efficient winter-MOX. For lakes this would result in increased MOX during ice-off with a ratio of MOXduring ice off/ MOXduring ice coverage of 14 and 16 for the two scenarios vs. 13 for today. For rivers the same trend can be assumed, with the ratio increasing from today's 1270 towards 1358 or 1539 for the two scenarios.

Thus, an extended time of ice-free conditions could reduce the methane emissions from Arctic water bodies. However, it has to be kept in mind that not much is known about the MOX during water column mixing in spring or autumn.

6 Conclusions

Our work on an eastern Siberian lake, river, and marine bay showed that methane accumulates under ice cover during the winter and is consumed differently in the three water bodies. Our study was restricted to late winter and midsummer, which represent two extremes of the annual cycle. Other processes during autumn mixing, ice-on, and ice-off are not considered.

Two main physical factors affecting the methane cycle in the water bodies under ice cover are the water velocity and the ice cover itself. In most of our ice cores no concentration gradient between the bottom of the ice cores and the top was obvious. As we could hardly detect any MOX within the ice cores, we assume that methane is not integrated into the ice during freeze-up. Therefore, the ice cover seems to effectively prevent any methane flux from the highly accumulated methane concentrations in the water towards the atmosphere. In the river with running water under the ice cover, only a minor accumulation of methane was observed. In the bay with a restricted but still present water movement, dilution or mixing with other water bodies, allowed for a moderate accumulation of methane. In the small lake, we assume a stagnant water body with a subsequent accumulation of high amounts of methane.

The biotic counterpart of the observed methane accumulation is microbial methane oxidation (MOX). In most cases, MOX in summer was much higher than in winter. We observed a strong dependence of MOX on the temperature, and with in situ temperatures of only 1 C in winter subsequently low rates were observed. Higher methane concentrations in winter indicate the methanotrophic bacteria were not limited by substrate (methane) concentrations. However, especially in Lake Golzovoye and its stagnant water body oxygen could become a limiting factor. Other factors could be nutrient limitation or shift in the population structure.

A shortened time of ice coverage on the water bodies is predicted with increasing temperatures in the Arctic. With respect to our study this would imply a shortened time for methane to accumulate below the ice and a shorter time for the less efficient winter MOX. Especially for lakes, an extended time of ice-free conditions could reduce the methane flux from the Arctic water bodies.

Data availability

Data on methane concentration and MOX are available at the PANGAEA database ( and (Bussmann et al., 2020a, b).

Author contributions

All authors carried out fieldwork and measurements and collected samples. IB performed the methane and MOX analyses. IB, BJ, PPO, and MW contributed to the initial and final versions of the paper.

Competing interests

The authors declare that they have no conflict of interest.


This study was part of the Helmholtz program PACES, Topic 1.3. We are thankful to the logistics department of the Alfred Wegener Institute, particularly Waldemar Schneider. Logistical support for the fieldwork was provided by the Russian Hydrographic Service (Hydrobase Tiksi).

Financial support

Matthias Winkel was supported by the Helmholtz Young Investigators Group of Susanne Liebner (VH-NG-919) and further supported by the German Ministry of Education and Research by a grant to Dirk Wagner (03G0836D). We acknowledge support by the Open Access Publication Funds of Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung.

The article processing charges for this open-access publication were covered by a Research Centre of the Helmholtz Association.

Review statement

This paper was edited by Zhongjun Jia and reviewed by two anonymous referees.


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Short summary
Arctic rivers, lakes, and bays are affected by a warming climate. We measured the amount and consumption of methane in waters from Siberia under ice cover and in open water. In the lake, methane concentrations under ice cover were much higher than in summer, and methane consumption was highest. The ice cover leads to higher methane concentration under ice. In a warmer Arctic, there will be more time with open water when methane is consumed by bacteria, and less methane will escape into the air.
Final-revised paper