the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Evaluation of carbonyl sulfide biosphere exchange in the Simple Biosphere Model (SiB4)
Linda M. J. Kooijmans
Ara Cho
Aleya Kaushik
Katherine D. Haynes
Ian Baker
Ingrid T. Luijkx
Mathijs Groenink
Wouter Peters
John B. Miller
Joseph A. Berry
Jerome Ogée
Laura K. Meredith
Kukka-Maaria Kohonen
Timo Vesala
Ivan Mammarella
Huilin Chen
Felix M. Spielmann
Georg Wohlfahrt
Max Berkelhammer
Mary E. Whelan
Kadmiel Maseyk
Ulli Seibt
Roisin Commane
Richard Wehr
Maarten Krol
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- Final revised paper (published on 22 Dec 2021)
- Supplement to the final revised paper
- Preprint (discussion started on 26 Jul 2021)
- Supplement to the preprint
Interactive discussion
Status: closed
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RC1: 'Review of bg-2021-192', Anonymous Referee #1, 11 Aug 2021
Linda M.J. Kooijmans and coauthors present an evaluation of the implementation of carbonyl sulphide (COS) fluxes in the terrestrial biosphere model SiB4. One can say without exaggeration that the earlier SiB4 implementation of COS is the reference for all current biosphere models that include COS. Kooijmans et al. present a very thorough evaluation with excellent supplementary information that answered almost all questions that arose while reading the manuscript.
My comments are hence minor.
1. I would disagree with the recommendation 4.1. α is not the only reason that COS fluxes are underestimated at some sites. GPP is also underestimated at DK-Sor and AT-Neu. The seasonal shape of GPP is very different in the model at US-IB2 compared to the estimated GPP from observations. So fitting α seems like a fudge factor. I would not recommend this.
2. I also regret the wording in recommendation 4.2. The minimum stomatal conductance is called g0 in the manuscript. It is not explained how it is used in the model. Stomatal conductance most often depends on net assimilation in conductance formulations such as Ball-Berry and its variants. Net assimilation is negative during dawn and dusk. Is stomatal conductance then set to g0? This is questionable. If I remember well, Ball et al. (1987) said that g0 is simply the fitted intercept in the empirical formulation during daytime photosynthesis. It is not the nighttime value. If ever I would recommend to look into such formulations as in Barbour and Buckley (PCE 2007).
3. I was missing the explanation/discussion that the authors used reanalysis data to drive the model and not local observations. But especially the discussion of the underestimation of GPP and COS fluxes at DK-Sor literally screamed for it. Would it be possible to redo say SiB4_var_Ogee of Figure 2 using local meteo?
4. I would have loved to see the comparison of SiB4 output with the inverted fields of Ma et al. (2021).
5. I think that Figure 1 is redundant given Table 3 and I would remove it.
6. I found the notation Vmax pretty unusual. I had to go back several times to Equations 2 and 3 to check the definition. I would recommend to use something like Vc,max25, which is pretty standard and tells the important information, i.e. it is for carboxylation and at 25 °C.
Citation: https://doi.org/10.5194/bg-2021-192-RC1 -
AC1: 'Reply on RC1', Linda Kooijmans, 03 Nov 2021
The comment was uploaded in the form of a supplement: https://bg.copernicus.org/preprints/bg-2021-192/bg-2021-192-AC1-supplement.pdf
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AC1: 'Reply on RC1', Linda Kooijmans, 03 Nov 2021
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RC2: 'Comment on bg-2021-192', Anonymous Referee #2, 03 Oct 2021
The paper presents an update of the modelling of the carbonyl sulfide biosphere fluxes within the SiB4 model. The soil model of Ogée et al. (2016) is implemented and a spatially and temporally varying COS atmospheric concentration is considered. This latter modification is shown to have a large impact. The new models are evaluated against field observations and a revised budget for COS is given at global scale, reducing the missing source. The authors make valuable recommendations, with a fine study on the alpha parameter of the COS vegetation uptake model.
The paper is well built and well written, with clear figures, and represents an important new contribution to this research field linking COS uptake and GPP.
I have only minor comments and some requests for clarification.
Page 2, line 65: “the Lund-Potsdam-Jena model (LPJ) and the Community Land Model (CLM4) (Launois et al. 2015a)” -> Launois et al. cannot be a reference for a possible implementation of biosphere COS exchange for LPJ and CLM as, as you further state in Table 1, they only scaled the GPP using a leaf relative uptake approach to estimate vegetation COS fluxes.
Page 3, line 95: Vesala et al., in prep -> Vesala et al., 2021. They mention that “e is the original e multiplied by 2.1, the average ratio of Hyytiälä and SiB4 LAI data”. How do you reconcile having a factor 2 on LAI with however correct simulations of GPP (Figure S3a) and COS fluxes (Figure 2a)?
Page 7, lines 177-178: “These numbers were later updated to alpha = 1400 and 8862 for C3 and C4 species, respectively, after updates were made to the SiB model.” -> Could you explain a bit more what were these updates and whether these parameters were recalibrated against measurements?
Page 8, lines 198-199: “These effects of nutrient fertilization on soil COS exchange were initially not simulated in the SiB4 model.” -> Do you mean they are simulated now?
Page 9, lines 226-228: “We chose the tortuosity functions of Deepagoda et al. (2011) for air and Millington and Quirk (1961) for water, as these functions do not require a pore-size distribution parameter, which facilitates its implementation in SiB4.” -> Do you mean you have a constant porosity per soil type?
Page 9, line 233: “kuncat varies with soil pH” -> How is soil pH prescribed/computed in SiB4?
Page 9, equation (6): Is the production term valid for both oxic and anoxic soils?
Page 11, line 284: “CO2 mole fractions were held constant at 370 µmol mol-1during spinup and simulations” - > Why don’t you at least use varying annual means to get the CO2 fertilization effect in the simulations?
Page 11, lines 289-290: “To compare SiB4 with site observations (listed in Table 3), we run the SiB4 model with 3-hourly output for only the grid cells (at 0.5° x 0.5° resolution) in which the sites are located” -> Why didn’t you use the local meteorology available from the FLUXNET, ICOS or AmeriFlux sites? This comment is also valid for your remark Page 15, lines 384-388 that the model temperature (from MERRA?) in 2012 was higher than the observed one at the US-ARM site.
On the same order, this means you are using a soil type defined at a 0.5° spatial resolution, what if the local soil type is different?
Page 12, lines 316-317: “Ecosystem fluxes are corrected for storage of COS in the canopy airspace using collocated canopy COS profile measurements when available (FI-HYY and US-HA1).” -> Can you explain this a bit more?
Page 21, lines 544-545: “922 ± 11 Gg S yr-1 over the years 2000-2020” -> How do you compute this uncertainty? Is that the interannual variability?
Figure S7: The diurnal cycles of COS soil fluxes seem to be often in opposite phase between observed and simulated (for ES-LM1, AT-NEU notably). Do you have an idea why?
Citation: https://doi.org/10.5194/bg-2021-192-RC2 -
AC2: 'Reply on RC2', Linda Kooijmans, 03 Nov 2021
The comment was uploaded in the form of a supplement: https://bg.copernicus.org/preprints/bg-2021-192/bg-2021-192-AC2-supplement.pdf
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AC2: 'Reply on RC2', Linda Kooijmans, 03 Nov 2021